RPSBLAST alignment for GI: 254780502 and conserved domain: TIGR02504
>gnl|CDD|162892 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. Length = 586
Score = 383 bits (985), Expect = e-106
Identities = 200/628 (31%), Positives = 304/628 (48%), Gaps = 66/628 (10%)
Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVEFYNLLSSFHFMC 353
+L RY L +G IE P+ F RVA LA E ++ FY+L+ + FM
Sbjct: 1 VLAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMP 60
Query: 354 STPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
++PTL N GTR QLS+CF+ V DD+ IF A +E A++ K GG+G +++ +R GA
Sbjct: 61 NSPTLMNAGGTRLGQLSACFVLPVEDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKGA 120
Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
+ GT G + G + F++V + A + QGG R+GA L+ WH D+EEF++ +K G
Sbjct: 121 KVSGTGGVASGPVSFMRVFDAAAGVIKQGGTRRGAQMGILDVWHPDIEEFIEAKKKEGK- 179
Query: 473 RRRTHDMNTANW---IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
+ N + D FM+ V + + L +P E E
Sbjct: 180 ------LTNFNISVGVTDAFMEAVEADEEYKLRNPRT--------------GEEIEELAE 219
Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
+ KV++++ A LW K++ +++ P + F D N P + G ++++N C E
Sbjct: 220 LDPKNKVYKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQP 279
Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
L CNLGSINL A F N FD+++L +R A R LDNVID+N + +
Sbjct: 280 L----LPYESCNLGSINL-AKFVKNGFGSFDFERLREVVRLATRFLDNVIDLNRFPLPEI 334
Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
++ R IGLG+MG L L IPY S EA A+E M FI+ A AS ELA+ERG
Sbjct: 335 AEATKKTRRIGLGIMGLADLLIKLGIPYDSEEARAFAEELMAFIADAAYRASAELAKERG 394
Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
+ F+ S ++ G I S LP EL++ + G+RN+ I
Sbjct: 395 PFPLFEASRYEMGRAMGARIP--------------SALPA-ELREAIAKYGIRNAQLTTI 439
Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLK 825
APT TI+ I G S I+P + +Y ++ G VN + L++ + + ++ +
Sbjct: 440 APTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYVD 499
Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS--LNLYLDEPSGK 883
G P++L K+ TA ++ P + + Q W+D + S +N+ D
Sbjct: 500 EKGTVEGAPG--PEELPKVFVTANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDAT--- 554
Query: 884 KLDF--IYRQAWLMGLK--TTYYLRSRS 907
D Y AW +GLK T Y SRS
Sbjct: 555 VEDVKAAYLLAWKLGLKGITVYRDGSRS 582