RPSBLAST alignment for GI: 254780502 and conserved domain: TIGR02504

>gnl|CDD|162892 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. Length = 586
 Score =  383 bits (985), Expect = e-106
 Identities = 200/628 (31%), Positives = 304/628 (48%), Gaps = 66/628 (10%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVEFYNLLSSFHFMC 353
           +L  RY L   +G  IE P+  F RVA  LA  E        ++    FY+L+ +  FM 
Sbjct: 1   VLAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMP 60

Query: 354 STPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++PTL N  GTR  QLS+CF+  V DD+  IF A +E A++ K  GG+G +++ +R  GA
Sbjct: 61  NSPTLMNAGGTRLGQLSACFVLPVEDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKGA 120

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            + GT G + G + F++V +  A  + QGG R+GA    L+ WH D+EEF++ +K  G  
Sbjct: 121 KVSGTGGVASGPVSFMRVFDAAAGVIKQGGTRRGAQMGILDVWHPDIEEFIEAKKKEGK- 179

Query: 473 RRRTHDMNTANW---IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
                 +   N    + D FM+ V  +  + L +P                  E  E   
Sbjct: 180 ------LTNFNISVGVTDAFMEAVEADEEYKLRNPRT--------------GEEIEELAE 219

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              + KV++++ A  LW K++   +++  P + F D  N   P  + G ++++N C E  
Sbjct: 220 LDPKNKVYKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQP 279

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           L         CNLGSINL A F  N    FD+++L   +R A R LDNVID+N   + + 
Sbjct: 280 L----LPYESCNLGSINL-AKFVKNGFGSFDFERLREVVRLATRFLDNVIDLNRFPLPEI 334

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R IGLG+MG    L  L IPY S EA   A+E M FI+  A  AS ELA+ERG
Sbjct: 335 AEATKKTRRIGLGIMGLADLLIKLGIPYDSEEARAFAEELMAFIADAAYRASAELAKERG 394

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  F+ S ++ G      I               S LP  EL++ +   G+RN+    I
Sbjct: 395 PFPLFEASRYEMGRAMGARIP--------------SALPA-ELREAIAKYGIRNAQLTTI 439

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+ I G S  I+P +  +Y ++   G     VN  +   L++   + + ++  + 
Sbjct: 440 APTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYVD 499

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS--LNLYLDEPSGK 883
                 G     P++L K+  TA ++ P   +   +  Q W+D + S  +N+  D     
Sbjct: 500 EKGTVEGAPG--PEELPKVFVTANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDAT--- 554

Query: 884 KLDF--IYRQAWLMGLK--TTYYLRSRS 907
             D    Y  AW +GLK  T Y   SRS
Sbjct: 555 VEDVKAAYLLAWKLGLKGITVYRDGSRS 582