HHsearch alignment for GI: 254780503 and conserved domain: TIGR00653

>TIGR00653 GlnA glutamine synthetase, type I; InterPro: IPR004809 Glutamine synthetase type I (or glutamate-ammonia ligase) has a dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. Escherichia coli, Synechocystis sp. (strain PCC 6803) , Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon S. acidocaldarius differs from that in E. coli in that it is not regulated by adenylation. ; GO: 0004356 glutamate-ammonia ligase activity, 0009399 nitrogen fixation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1018.82  Aligned_cols=430  Identities=31%  Similarity=0.484  Sum_probs=398.9

Q ss_pred             HHHHHHHHH-CCCCEEEEEEECCCCCEEEEEEEHHHHH------HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             999999971-7983999999788983312676198873------015677361000002427743466555778887789
Q gi|254780503|r   18 EQAAKWLKD-NRIEDVECITPDLAGIPRGKMMPSSKFI------SNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLR   90 (461)
Q Consensus        18 ~~v~~~l~~-~~I~~V~v~~~Dl~G~~RgK~vp~~~f~------~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~   90 (461)
T Consensus         1 ~~~~~~~keG~~VkfV~l~F~Di~G~~~~~~iP~~~~~~i~~~~~~fe~-------G~~FDGSSi~G---f~~IeeSDM~   70 (486)
T TIGR00653         1 EEVLKLIKEGENVKFVDLRFTDIKGKLQHVEIPASALDDIDELEEAFEE-------GIMFDGSSIRG---FQGIEESDML   70 (486)
T ss_pred             CCHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHC-------CCCCCCCCCCC---CCCHHHHCCC
T ss_conf             9202365078805799999863788410168883132117888888642-------63446612057---4661110220


Q ss_pred             EEEECCCCEECCCCCCC--EEEEEEECCCC-CCCCCCCCHHHHHHHHHHHHH--CCCCCEEECCCCCEEEEECCCCCCCC
Q ss_conf             99600124538788877--09999740335-752123425777899999861--02764023224417998216788887
Q gi|254780503|r   91 LSPDLSTLSIVPWEMDP--TAQIVCDVVDY-NGKEVTYTPRNVLKRVLNFYA--QNELKPIIAPEIEFYLIAKNEDPDYP  165 (461)
Q Consensus        91 l~PD~~Tl~~lPw~~~~--~a~vl~~~~~~-dG~p~~~~PR~iLkr~i~~l~--~~G~~~~~g~E~EF~L~~~~~~~~~~  165 (461)
T Consensus        71 l~PDp~T~~i~Pw~~~~~~~~~~ic~vY~p~~~~~y~rDPR~~A~rae~~L~~~~~g~~~~fGPEpEFFlFd~~~~~~~~  150 (486)
T TIGR00653        71 LKPDPSTAVIDPWRAEKKKTLRVICDVYEPVTGEPYERDPRSIAKRAEEYLKSTGIGDTAYFGPEPEFFLFDSIEFGSLS  150 (486)
T ss_pred             CCCCCCCEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCC
T ss_conf             10273631674531688857999988730777732788847899999998621467737786587312100546578655


Q ss_pred             -----------------CCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC-CCCE
Q ss_conf             -----------------778778----888776678777766544289999989976786311022101012786-4201
Q gi|254780503|r  166 -----------------LQPPKG----RSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPA-QFEI  223 (461)
Q Consensus       166 -----------------~~~~~~----~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpG-Q~Ei  223 (461)
T Consensus       151 n~~~~~~d~~eG~WN~~r~~e~g~~~n~g~~~~~kgGYF~v~P~D~~~D~R~e~v~~L~~~G~~~E~~HHEVA~aGQ~Ei  230 (486)
T TIGR00653       151 NSSYYEVDSEEGAWNTGREYEGGSELNSGYKPRDKGGYFPVPPTDTAVDIRREMVLTLEQLGLDVEVHHHEVATAGQHEI  230 (486)
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEE
T ss_conf             54421144443555868446888861246034777777587689888899999999998659828886010147874253


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCCCCC---CCHHH
Q ss_conf             112665211378999999999999863066033112321135662689998763136----87423358865---52156
Q gi|254780503|r  224 NIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIK----SNQNIFSNPDG---SETDN  296 (461)
Q Consensus       224 ~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~----~g~n~f~~~~~---~ls~~  296 (461)
T Consensus       231 d~kf~~l~~~AD~~~~yKyvvK~vA~~~Gk~ATFMPKPlfGdNGSGMH~H~SLW--K~ePf~GenlF~g~~~~y~GLSe~  308 (486)
T TIGR00653       231 DFKFDTLLKTADDIQTYKYVVKNVAKKHGKTATFMPKPLFGDNGSGMHCHQSLW--KGEPFDGENLFAGEEGEYAGLSET  308 (486)
T ss_pred             ECCHHHHHHHHCCEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEE--ECCCCCCCEECCCCCCCCCCHHHH
T ss_conf             046478987405045147899899998388797458788772668554835563--277888840006858876543588


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             6654577764223212220766101344204655754334243345003650223--88652035303587799899999
Q gi|254780503|r  297 FRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLA  374 (461)
Q Consensus       297 ~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~la  374 (461)
T Consensus       309 ALyyIGGiLkHA~AL~A~tNPTvNSYKRLVPGYEAPv~lays~~NRSA~iRIP~~~~n~kA~R~E~R~PDPs~NPYLAFA  388 (486)
T TIGR00653       309 ALYYIGGILKHAKALAAFTNPTVNSYKRLVPGYEAPVYLAYSARNRSALIRIPASRGNPKATRIEVRFPDPSANPYLAFA  388 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCEECCCCEEEEEEECCCCCCCHHHHHH
T ss_conf             88875208777788889765660552236886121023021677875258740164088336998707887656789999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCC---------CHHCCCCCHHHHHHHHHCC---HHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf             99999999898468887433453000---------3110478989999998659---89887355899999999999-99
Q gi|254780503|r  375 ASLACGLLGILQKIEPTPPTMKSANQ---------EAINLPRGLLEAVTLLENT---SHFKDIFGSQFIDMYANLKR-NE  441 (461)
Q Consensus       375 ail~agl~Gi~~~l~p~~~~~~~~~~---------~~~~LP~sL~eAl~~l~~d---~~l~~~lg~~~v~~~~~~k~-~E  441 (461)
T Consensus       389 A~LmAGLDGIKnKI~PgeP~d~n~Y~l~peE~~e~GI~~lP~~L~eAL~~Le~D~Ef~~~~~vfg~~~~e~fie~Kr~~E  468 (486)
T TIGR00653       389 ALLMAGLDGIKNKIDPGEPVDKNLYELSPEELRELGIPQLPGSLEEALDELESDHEFLVLKGVFGEEFIEAFIELKREKE  468 (486)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             99986201200145878731043335898999738901105679999999731462002203203789999987653025


Q ss_pred             HHHHHCCCCHHHHHHHHH
Q ss_conf             999863899789987631
Q gi|254780503|r  442 FETFMQVISPWEREFLLL  459 (461)
Q Consensus       442 ~~~~~~~vt~wE~~~yl~  459 (461)
T Consensus       469 ~~~~r~~phP~Ef~~Y~~  486 (486)
T TIGR00653       469 WDDYRLRPHPWEFEKYYD  486 (486)
T ss_pred             CCHHCCCCCCHHHHCCCC
T ss_conf             100036774012201159