Query         gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs    147 out of 2566
Neff          7.4 
Searched_HMMs 39220
Date          Sun May 29 23:23:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780503.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00653 GlnA glutamine synth 100.0       0       0 1018.8  22.9  430   18-459     1-486 (486)
  2 TIGR03105 gln_synth_III glutam 100.0       0       0  930.7  36.0  419   20-459     1-435 (435)
  3 COG0174 GlnA Glutamine synthet 100.0       0       0  910.5  37.4  426   16-460     2-443 (443)
  4 PRK09469 glnA glutamine synthe 100.0       0       0  892.3  38.2  433   15-459     1-468 (469)
  5 pfam00120 Gln-synt_C Glutamine 100.0       0       0  608.7  17.2  254  124-380     1-257 (257)
  6 KOG0683 consensus              100.0 5.8E-40 1.5E-44  282.6  11.6  365    1-417     4-374 (380)
  7 COG3968 Uncharacterized protei  99.9 2.5E-22 6.3E-27  166.7  18.3  272  143-422   214-575 (724)
  8 pfam03951 Gln-synt_N Glutamine  99.4 7.3E-13 1.9E-17  104.4   8.4   81   28-118     1-84  (84)
  9 PRK13517 carboxylate-amine lig  98.7 2.2E-07 5.6E-12   68.4   9.3  198  144-388     8-265 (371)
 10 PRK13516 carboxylate-amine lig  98.6 1.3E-06 3.3E-11   63.4  11.6  195  144-382    11-262 (372)
 11 TIGR02050 gshA_cyan_rel unchar  98.6 1.2E-06 3.2E-11   63.5  11.3  210  146-396     1-274 (297)
 12 PRK13515 carboxylate-amine lig  98.5 3.7E-06 9.3E-11   60.4  12.0  200  144-387     5-261 (381)
 13 PRK13518 carboxylate-amine lig  98.4 7.1E-06 1.8E-10   58.5  11.3  195  144-382    12-263 (357)
 14 pfam04107 GCS2 Glutamate-cyste  98.1 3.6E-05 9.1E-10   53.9   9.4  196  146-383     2-257 (291)
 15 COG2170 Uncharacterized conser  98.0 6.7E-05 1.7E-09   52.1   9.5  214  144-391     2-262 (369)
 16 KOG0683 consensus               97.5 0.00046 1.2E-08   46.6   7.6  243   87-386    97-372 (380)
 17 COG3572 GshA Gamma-glutamylcys  95.7   0.097 2.5E-06   31.3   8.3   76  195-278   156-232 (456)
 18 TIGR03444 gshA_related glutama  91.4    0.83 2.1E-05   25.2   6.3   58  319-383   253-319 (390)
 19 pfam08759 DUF1792 Domain of un  81.9     1.6   4E-05   23.3   3.2   83  239-327    69-157 (225)
 20 KOG0558 consensus               72.9     3.4 8.6E-05   21.2   2.8   57  188-260   245-302 (474)
 21 pfam06877 DUF1260 Protein of u  65.6      10 0.00026   18.0   7.7   93  128-253     2-96  (103)
 22 PRK09444 pntB pyridine nucleot  56.7      15 0.00038   17.0   4.2   52  222-277   305-357 (459)
 23 TIGR01515 branching_enzym 1,4-  53.6      16 0.00042   16.6   7.3  107   83-209    85-217 (608)
 24 PRK11410 hypothetical protein;  51.6      13 0.00032   17.4   2.5   30  108-138   128-160 (570)
 25 cd01141 TroA_d Periplasmic bin  49.1      19 0.00047   16.3   3.0   28  260-288   159-186 (186)
 26 TIGR01436 glu_cys_lig_pln glut  48.0      20 0.00051   16.1   6.9  180  128-332     5-223 (446)
 27 TIGR02048 gshA_cyano glutamate  47.2      21 0.00053   16.0   4.9  269   92-442    26-320 (377)
 28 KOG0257 consensus               46.8      17 0.00043   16.6   2.5   49  108-159   174-222 (420)
 29 cd06184 flavohem_like_fad_nad_  45.1      17 0.00045   16.5   2.4   28  222-252   143-170 (247)
 30 pfam04468 PSP1 PSP1 C-terminal  44.7      23 0.00057   15.7   3.2   59  192-255    25-83  (88)
 31 COG1702 PhoH Phosphate starvat  43.0      24 0.00061   15.6   3.0   72  363-435   151-224 (348)
 32 PRK13289 nitric oxide dioxygen  41.9      20  0.0005   16.1   2.2   29  221-252   290-318 (399)
 33 pfam11679 DUF3275 Protein of u  41.2      21 0.00055   15.9   2.3   36  109-145   163-201 (211)
 34 pfam09909 DUF2138 Uncharacteri  38.5      20  0.0005   16.1   1.8   30  108-138   117-149 (552)
 35 pfam03851 UvdE UV-endonuclease  37.6      29 0.00074   15.0   5.7   71  194-268    45-115 (275)
 36 TIGR01434 glu_cys_ligase gluta  37.3      27 0.00068   15.3   2.3   16  356-373   324-339 (518)
 37 pfam02233 PNTB NAD(P) transhyd  36.5      30 0.00077   14.9   4.0   53  222-278   310-363 (464)
 38 PHA01807 hypothetical protein   35.6      22 0.00055   15.9   1.6   42  189-230    94-135 (145)
 39 pfam03484 B5 tRNA synthetase B  34.0      33 0.00084   14.7   3.2   47  195-253    21-69  (69)
 40 pfam00763 THF_DHG_CYH Tetrahyd  31.6      36 0.00092   14.4   3.5   97  118-264     3-99  (117)
 41 PRK05996 motB flagellar motor   29.7      39 0.00098   14.2   2.6   46  268-316   311-359 (431)
 42 TIGR01663 PNK-3'Pase polynucle  29.0      40   0.001   14.1   3.5   48   22-72    207-259 (526)
 43 COG3364 Zn-ribbon containing p  28.4      16 0.00042   16.6   0.0   27  200-227    52-78  (112)
 44 TIGR02812 fadR_gamma fatty aci  27.8      29 0.00073   15.1   1.2   24  123-146    39-63  (275)
 45 COG1602 Uncharacterized conser  27.8      42  0.0011   14.0   2.5  135  196-335   183-345 (402)
 46 smart00874 B5 tRNA synthetase   27.8      42  0.0011   14.0   3.3   48  196-253    22-71  (71)
 47 TIGR01793 cit_synth_euk citrat  27.4      15 0.00039   16.8  -0.3   31   17-47     16-47  (430)
 48 TIGR01647 ATPase-IIIA_H plasma  27.0      43  0.0011   13.9   5.7  101  124-261   434-538 (835)
 49 COG4326 Spo0M Sporulation cont  26.1      45  0.0011   13.8   2.0   40  190-229   152-198 (270)
 50 PHA02105 hypothetical protein   25.9      41   0.001   14.0   1.7   39    2-43     17-55  (68)
 51 TIGR02793 nikR nickel-responsi  25.9      13 0.00033   17.3  -0.9   30  241-274    61-90  (130)
 52 COG0296 GlgB 1,4-alpha-glucan   25.0      47  0.0012   13.7   7.8  109   84-210    94-231 (628)
 53 PRK11920 rirA iron-responsive   24.9      36 0.00091   14.4   1.2  103  191-314    37-140 (153)
 54 TIGR02630 xylose_isom_A xylose  23.8      49  0.0013   13.5   2.8   41    6-49     71-111 (437)
 55 PRK10853 hypothetical protein;  23.7      49  0.0012   13.5   1.7   36   12-54      8-43  (118)
 56 pfam09845 DUF2072 Zn-ribbon co  23.7      25 0.00064   15.4   0.3   12  216-227    82-93  (121)
 57 cd00674 LysRS_core_class_I Thi  23.5      50  0.0013   13.5   5.8  147  109-267    20-176 (354)
 58 COG4716 Myosin-crossreactive a  22.5      52  0.0013   13.4   3.5   83  186-269   221-314 (587)
 59 PRK13895 conjugal transfer pro  22.4      52  0.0013   13.3   1.8   16  240-255     5-20  (144)
 60 PTZ00326 phenylalanyl-tRNA syn  22.2      53  0.0013   13.3   4.1   41  118-158   231-278 (505)
 61 COG1282 PntB NAD/NADP transhyd  22.1      53  0.0013   13.3   4.2   33  242-277   326-362 (463)
 62 PTZ00260 glycosyl transferase   22.1      33 0.00084   14.7   0.6   25  267-291   156-180 (336)
 63 COG3465 Uncharacterized conser  22.0      53  0.0014   13.3   4.1   86  123-247    26-116 (171)
 64 KOG1534 consensus               22.0      51  0.0013   13.4   1.5   28  298-325   147-174 (273)
 65 pfam08532 Glyco_hydro_42M Beta  21.6      54  0.0014   13.2   3.9   54  191-244    28-81  (207)
 66 TIGR00151 ispF 2C-methyl-D-ery  21.3      55  0.0014   13.2   2.2   58   84-146    37-95  (159)
 67 PRK02308 uvsE putative UV dama  21.1      55  0.0014   13.2   5.7   25  243-267    96-120 (316)
 68 TIGR00631 uvrb excinuclease AB  21.1      35 0.00088   14.5   0.5   59   44-103   275-347 (667)
 69 PRK05784 phosphoribosylamine--  21.1      55  0.0014   13.2   5.0   91  144-234   203-316 (485)
 70 TIGR00092 TIGR00092 GTP-bindin  21.0      56  0.0014   13.2   1.8   32   16-47     51-83  (390)
 71 KOG4116 consensus               21.0      26 0.00066   15.3  -0.1   48  292-348    25-81  (90)
 72 pfam08777 RRM_3 RNA binding mo  21.0      56  0.0014   13.2   2.4   35   13-47     11-46  (102)
 73 cd00948 FBP_aldolase_I_a Fruct  20.0      58  0.0015   13.0   2.9   70  118-213   142-215 (330)

No 1  
>TIGR00653 GlnA glutamine synthetase, type I; InterPro: IPR004809   Glutamine synthetase type I (or glutamate-ammonia ligase) has a dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. Escherichia coli, Synechocystis sp. (strain PCC 6803) , Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon S. acidocaldarius differs from that in E. coli in that it is not regulated by adenylation. ; GO: 0004356 glutamate-ammonia ligase activity, 0009399 nitrogen fixation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1018.82  Aligned_cols=430  Identities=31%  Similarity=0.484  Sum_probs=398.9

Q ss_pred             HHHHHHHHH-CCCCEEEEEEECCCCCEEEEEEEHHHHH------HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             999999971-7983999999788983312676198873------015677361000002427743466555778887789
Q gi|254780503|r   18 EQAAKWLKD-NRIEDVECITPDLAGIPRGKMMPSSKFI------SNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLR   90 (461)
Q Consensus        18 ~~v~~~l~~-~~I~~V~v~~~Dl~G~~RgK~vp~~~f~------~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~   90 (461)
                      +++.+++++ ++||||+++|+|+.|.++.-.||++.+.      +....       +..|||+++.|   +...++|||+
T Consensus         1 ~~~~~~~keG~~VkfV~l~F~Di~G~~~~~~iP~~~~~~i~~~~~~fe~-------G~~FDGSSi~G---f~~IeeSDM~   70 (486)
T TIGR00653         1 EEVLKLIKEGENVKFVDLRFTDIKGKLQHVEIPASALDDIDELEEAFEE-------GIMFDGSSIRG---FQGIEESDML   70 (486)
T ss_pred             CCHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHC-------CCCCCCCCCCC---CCCHHHHCCC
T ss_conf             9202365078805799999863788410168883132117888888642-------63446612057---4661110220


Q ss_pred             EEEECCCCEECCCCCCC--EEEEEEECCCC-CCCCCCCCHHHHHHHHHHHHH--CCCCCEEECCCCCEEEEECCCCCCCC
Q ss_conf             99600124538788877--09999740335-752123425777899999861--02764023224417998216788887
Q gi|254780503|r   91 LSPDLSTLSIVPWEMDP--TAQIVCDVVDY-NGKEVTYTPRNVLKRVLNFYA--QNELKPIIAPEIEFYLIAKNEDPDYP  165 (461)
Q Consensus        91 l~PD~~Tl~~lPw~~~~--~a~vl~~~~~~-dG~p~~~~PR~iLkr~i~~l~--~~G~~~~~g~E~EF~L~~~~~~~~~~  165 (461)
                      |+||++|++++||..++  +++|+|++|++ +++|++.|||++|||++++|+  ..|.+..+|.|.||||||+.+.....
T Consensus        71 l~PDp~T~~i~Pw~~~~~~~~~~ic~vY~p~~~~~y~rDPR~~A~rae~~L~~~~~g~~~~fGPEpEFFlFd~~~~~~~~  150 (486)
T TIGR00653        71 LKPDPSTAVIDPWRAEKKKTLRVICDVYEPVTGEPYERDPRSIAKRAEEYLKSTGIGDTAYFGPEPEFFLFDSIEFGSLS  150 (486)
T ss_pred             CCCCCCCEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCC
T ss_conf             10273631674531688857999988730777732788847899999998621467737786587312100546578655


Q ss_pred             -----------------CCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC-CCCE
Q ss_conf             -----------------778778----888776678777766544289999989976786311022101012786-4201
Q gi|254780503|r  166 -----------------LQPPKG----RSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPA-QFEI  223 (461)
Q Consensus       166 -----------------~~~~~~----~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpG-Q~Ei  223 (461)
                                       ...+.+    ....+..+++||.+.+.|...+++++|+..|+++|+.||..|||+|+| |.||
T Consensus       151 n~~~~~~d~~eG~WN~~r~~e~g~~~n~g~~~~~kgGYF~v~P~D~~~D~R~e~v~~L~~~G~~~E~~HHEVA~aGQ~Ei  230 (486)
T TIGR00653       151 NSSYYEVDSEEGAWNTGREYEGGSELNSGYKPRDKGGYFPVPPTDTAVDIRREMVLTLEQLGLDVEVHHHEVATAGQHEI  230 (486)
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEE
T ss_conf             54421144443555868446888861246034777777587689888899999999998659828886010147874253


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCCCCC---CCHHH
Q ss_conf             112665211378999999999999863066033112321135662689998763136----87423358865---52156
Q gi|254780503|r  224 NIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIK----SNQNIFSNPDG---SETDN  296 (461)
Q Consensus       224 ~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~----~g~n~f~~~~~---~ls~~  296 (461)
                      +++|..++++||++++||++||.||++||++|||||||+.|+||||||+|+|||  |    +|+|+|+|+++   +||++
T Consensus       231 d~kf~~l~~~AD~~~~yKyvvK~vA~~~Gk~ATFMPKPlfGdNGSGMH~H~SLW--K~ePf~GenlF~g~~~~y~GLSe~  308 (486)
T TIGR00653       231 DFKFDTLLKTADDIQTYKYVVKNVAKKHGKTATFMPKPLFGDNGSGMHCHQSLW--KGEPFDGENLFAGEEGEYAGLSET  308 (486)
T ss_pred             ECCHHHHHHHHCCEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEE--ECCCCCCCEECCCCCCCCCCHHHH
T ss_conf             046478987405045147899899998388797458788772668554835563--277888840006858876543588


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             6654577764223212220766101344204655754334243345003650223--88652035303587799899999
Q gi|254780503|r  297 FRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLA  374 (461)
Q Consensus       297 ~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~la  374 (461)
                      |+|||||||+|||||+||+||||||||||+||++||++++||..||||+||||.+  +++++|||+|+|||+||||||+|
T Consensus       309 ALyyIGGiLkHA~AL~A~tNPTvNSYKRLVPGYEAPv~lays~~NRSA~iRIP~~~~n~kA~R~E~R~PDPs~NPYLAFA  388 (486)
T TIGR00653       309 ALYYIGGILKHAKALAAFTNPTVNSYKRLVPGYEAPVYLAYSARNRSALIRIPASRGNPKATRIEVRFPDPSANPYLAFA  388 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCEECCCCEEEEEEECCCCCCCHHHHHH
T ss_conf             88875208777788889765660552236886121023021677875258740164088336998707887656789999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCC---------CHHCCCCCHHHHHHHHHCC---HHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf             99999999898468887433453000---------3110478989999998659---89887355899999999999-99
Q gi|254780503|r  375 ASLACGLLGILQKIEPTPPTMKSANQ---------EAINLPRGLLEAVTLLENT---SHFKDIFGSQFIDMYANLKR-NE  441 (461)
Q Consensus       375 ail~agl~Gi~~~l~p~~~~~~~~~~---------~~~~LP~sL~eAl~~l~~d---~~l~~~lg~~~v~~~~~~k~-~E  441 (461)
                      |+|+||||||+|||+||+|++.|.|+         +.+.||.||.|||++|++|   .+++++||++|++.|+++|| .|
T Consensus       389 A~LmAGLDGIKnKI~PgeP~d~n~Y~l~peE~~e~GI~~lP~~L~eAL~~Le~D~Ef~~~~~vfg~~~~e~fie~Kr~~E  468 (486)
T TIGR00653       389 ALLMAGLDGIKNKIDPGEPVDKNLYELSPEELRELGIPQLPGSLEEALDELESDHEFLVLKGVFGEEFIEAFIELKREKE  468 (486)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             99986201200145878731043335898999738901105679999999731462002203203789999987653025


Q ss_pred             HHHHHCCCCHHHHHHHHH
Q ss_conf             999863899789987631
Q gi|254780503|r  442 FETFMQVISPWEREFLLL  459 (461)
Q Consensus       442 ~~~~~~~vt~wE~~~yl~  459 (461)
                      |++|+..|||||+.+||.
T Consensus       469 ~~~~r~~phP~Ef~~Y~~  486 (486)
T TIGR00653       469 WDDYRLRPHPWEFEKYYD  486 (486)
T ss_pred             CCHHCCCCCCHHHHCCCC
T ss_conf             100036774012201159


No 2  
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00  E-value=0  Score=930.70  Aligned_cols=419  Identities=32%  Similarity=0.470  Sum_probs=378.7

Q ss_pred             HHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf             99999717983999999788983312676198873015677361000002427743466555778887789996001245
Q gi|254780503|r   20 AAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLS   99 (461)
Q Consensus        20 v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~~Tl~   99 (461)
                      +.+++++++|+||+++|+|++|++|||+||+++|.+....|+...       +.++.+  ....++++|++++||++|++
T Consensus         1 ~~~~i~~~~I~~v~~~~~D~~G~~RgK~vp~~~~~~~~~~G~~f~-------~~~~~~--~~~~~~~~D~~~~PD~~Tl~   71 (435)
T TIGR03105         1 LQALARDKGIKYFLASFVDLHGVQKAKLVPAEAIDHMATGGAGFA-------GFAAWG--LGQSPADPDLMAIPDLSSLT   71 (435)
T ss_pred             CHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCCE-------EECHHH--CCCCCCCCCEEEEECCCCEE
T ss_conf             966885589859999999999957899986999999985899710-------124321--37899988689997578307


Q ss_pred             ECCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             38788877099997403357521234257778999998610276402322441799821678888777877888877667
Q gi|254780503|r  100 IVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILG  179 (461)
Q Consensus       100 ~lPw~~~~~a~vl~~~~~~dG~p~~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~  179 (461)
                      ++||. +++++|+|+++ .||+|++.|||++|++++++++++|+++++|+|+|||||+++.+......   .  ......
T Consensus        72 ~lPw~-p~~a~v~~d~~-~dG~p~~~~PR~~L~~~~~~~~~~G~~~~~g~ElEF~l~~~~~~~~~~~~---~--~~~~~~  144 (435)
T TIGR03105        72 QLPWQ-PGVAWVAADLH-VNGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSLSIA---D--RADTLA  144 (435)
T ss_pred             ECCCC-CCEEEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCCCCCC---C--CCCCCC
T ss_conf             78888-98489999974-08988886979999999999996599289767627999821688985567---8--777677


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf             87777665442899999899767863110221010127864201112665211378999999999999863066033112
Q gi|254780503|r  180 GQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMA  259 (461)
Q Consensus       180 ~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp  259 (461)
                      .++|+...+++.++++++|++.|+++||+||++|||+|||||||++.|+++|+|||+++++|++||+||++||++|||||
T Consensus       145 ~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~iA~~~G~~ATFMp  224 (435)
T TIGR03105       145 KPCYDQRGLMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMP  224 (435)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             88667200101679999999999977997188664657981699726799899999999999999999998099899703


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC------C
Q ss_conf             32113566268999876313687423358865----5215666545777642232122207661013442046------5
Q gi|254780503|r  260 KPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG----SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLD------M  329 (461)
Q Consensus       260 KP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~----~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~------~  329 (461)
                      ||+.+.+|||||+|+|||| ++|+|+|+++++    +||+.+++||||||+|+|++++|+|||+||||||+|+      +
T Consensus       225 KP~~~~~GsG~HiH~SL~d-~~g~n~f~d~~~~~~~glS~~~~~fiaGlL~~~~~l~a~~~Pt~NSYkRl~~~~~~~~~~  303 (435)
T TIGR03105       225 KPFADLTGNGCHFHLSLWD-EDGRNLFADDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYKRLNAPRTTSGAT  303 (435)
T ss_pred             CCCCCCCCCEEEEEEEEEC-CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             1378999870038986775-999760368987665554599999999999861323150147765211156886565765


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC------HH
Q ss_conf             575433424334500365022388652035303587799899999999999998984688874334530003------11
Q gi|254780503|r  330 GCPVNNAWGYDNRTTAFRIPFSDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQE------AI  403 (461)
Q Consensus       330 ~ap~~~~WG~~NR~~~iRip~~~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~~------~~  403 (461)
                      |||++++||++||+++||||.+    +|||+|++|++|||||++||+|+|||+||+++++|++|+++|++.+      .+
T Consensus       304 waP~~~~WG~~NR~~~iRip~~----~riE~R~~da~aNPYL~lAailaAGl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~  379 (435)
T TIGR03105       304 WAPNFISYGGNNRTHMVRIPDP----GRFELRLADGAANPYLAQAAILAAGLDGIERKLDPGPPRDINLYAEELAARGVE  379 (435)
T ss_pred             CCCCEEEECCCCCCCEEEECCC----CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf             5762023135776550782378----713644899887989999999998887886589999977788655630126856


Q ss_pred             CCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             04789899999986598988735589999999999999999863899789987631
Q gi|254780503|r  404 NLPRGLLEAVTLLENTSHFKDIFGSQFIDMYANLKRNEFETFMQVISPWEREFLLL  459 (461)
Q Consensus       404 ~LP~sL~eAl~~l~~d~~l~~~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~  459 (461)
                      +||+||.|||++|++|++++++||++||+.|+++|++||++|++.|||||+++||+
T Consensus       380 ~LP~sL~eAl~~l~~~~~l~~~lg~~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yle  435 (435)
T TIGR03105       380 TLPQNLLEALRALEADPLLAEALGAEFVDEFLKLKRQEWEEYHRHVSDWEIDRYLD  435 (435)
T ss_pred             CCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             66889999999997590987854999999999999999999977999999985149


No 3  
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=910.45  Aligned_cols=426  Identities=39%  Similarity=0.636  Sum_probs=389.7

Q ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHH----HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             9899999997179839999997889833126761988----730156773610000024277434665557788877899
Q gi|254780503|r   16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSK----FISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRL   91 (461)
Q Consensus        16 ~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~----f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l   91 (461)
                      +.+++.+++++++|++|+++|+|++|++|||++|+++    +......       +..|+|+++.+   +...++||+++
T Consensus         2 ~~~~~~~~~~~~~v~~v~~~f~D~~G~~r~k~~p~~~~~~~~~~~~~~-------g~~fdgss~~g---~~~i~~sDm~l   71 (443)
T COG0174           2 TKEDVLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQLFEG-------GVVFDGSSIAG---FEGIGESDMVL   71 (443)
T ss_pred             CHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHCC-------CCCCCCCCCCC---CCCCCCCCEEE
T ss_conf             178899998728936999999779997622698665532677764305-------86768864124---67789888699


Q ss_pred             EEECCCCEECCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-EEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             96001245387888770999974033575212342577789999986102764-02322441799821678888777877
Q gi|254780503|r   92 SPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQNELK-PIIAPEIEFYLIAKNEDPDYPLQPPK  170 (461)
Q Consensus        92 ~PD~~Tl~~lPw~~~~~a~vl~~~~~~dG~p~~~~PR~iLkr~i~~l~~~G~~-~~~g~E~EF~L~~~~~~~~~~~~~~~  170 (461)
                      +||++|++++||..+++|+|+|++++++|+|++.|||++|+|++++++++|+. +++|+|+|||||+.+......     
T Consensus        72 ~Pd~~T~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~~-----  146 (443)
T COG0174          72 KPDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPDG-----  146 (443)
T ss_pred             EECCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEECCCCCCCC-----
T ss_conf             626675276777788727999998879999589883999999999998668854302024169996036677666-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88887766787777665442899999899767863110221010127864201112665211378999999999999863
Q gi|254780503|r  171 GRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFK  250 (461)
Q Consensus       171 ~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~  250 (461)
                         +++..++++|++.++++.++++++|+..|+++||++|++|||+||||+||++++++++++||++++||+++|+||++
T Consensus       147 ---~~~~~~g~yf~~~~~~~~~d~~~~i~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~  223 (443)
T COG0174         147 ---GRPADKGGYFDVAPLDEAEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEK  223 (443)
T ss_pred             ---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---76688776467654222789999999999987998263014505885578337878899989999999999999999


Q ss_pred             HCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HC
Q ss_conf             06603311232113566268999876313687423358865--5215666545777642232122207661013442-04
Q gi|254780503|r  251 HDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG--SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRL-VL  327 (461)
Q Consensus       251 ~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~--~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl-~p  327 (461)
                      ||++|||||||+.+.+|||||+|+||||.+|+ |+|+++++  ++|+.++|||||||+|+++++||+|||||||||| +|
T Consensus       224 hG~~aTFMpKP~~g~~GsGmH~H~Sl~~~dg~-n~F~d~~~~~~lS~~~~~~igGilkha~~~~ai~~PtvNSYkRl~vp  302 (443)
T COG0174         224 HGLTATFMPKPFFGDNGSGMHVHQSLWDKDGG-NLFADEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYKRLGVP  302 (443)
T ss_pred             HCCEEEEECCCCCCCCCCCEEEEEEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf             59859994787789997730489877648997-52048888525799999999999987898676757775104214898


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH---
Q ss_conf             655754334243345003650223--886520353035877998999999999999989846888743345300031---
Q gi|254780503|r  328 DMGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQEA---  402 (461)
Q Consensus       328 ~~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~~~---  402 (461)
                      ..|||++++||.+|||++||||.+  +++++|||+|+||++|||||++||+|+|||+||++|++|++|+++|.|+..   
T Consensus       303 ~e~AP~~~~wg~~NRsa~iRIP~~~~~~~~~RiE~R~pdp~aNPYLa~AaiL~agldGI~~ki~p~~p~~~n~y~~~~~e  382 (443)
T COG0174         303 YEWAPTYIAWGVRNRSASVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAAGLDGIENKLEPGEPVDGNLYELSPEE  382 (443)
T ss_pred             CCCCCCHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf             55586111003477515799578887777644576479998898999999999999777547999874456432289545


Q ss_pred             ---HCCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             ---1047898999999865989887355899999999999999998638997899876317
Q gi|254780503|r  403 ---INLPRGLLEAVTLLENTSHFKDIFGSQFIDMYANLKRNEFETFMQVISPWEREFLLLN  460 (461)
Q Consensus       403 ---~~LP~sL~eAl~~l~~d~~l~~~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~~  460 (461)
                         +.||.||.|||++|+.+++++++||++|++.|+++|+.||++|...||+||+++||..
T Consensus       383 ~~~~~LP~sL~eAl~~l~~~~~~~~~lge~~~~~yi~~K~~E~~~~~~~v~~wE~~~yl~~  443 (443)
T COG0174         383 RKEPTLPASLREALDALEDSEFLREALGEDFIDAYIALKRAEWEEFRSRVTPWEFERYLSV  443 (443)
T ss_pred             HCCCCCCCCHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             2335676269999998620568887628499999999999999999725999999988529


No 4  
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00  E-value=0  Score=892.29  Aligned_cols=433  Identities=28%  Similarity=0.427  Sum_probs=383.6

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             998999999971798399999978898331267619887301-5677361000002427743466555778887789996
Q gi|254780503|r   15 KNWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISN-IPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSP   93 (461)
Q Consensus        15 ~~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~P   93 (461)
                      .++|+|+++|++++|+||+++|+|++|++|+|.||+++|.+. ...|       ..|+|+++.+   +...+++|++++|
T Consensus         1 ms~eevl~~i~e~~I~~V~~~f~Dl~G~~r~k~Ip~~~~~~~~~~~G-------~~fdGSsv~g---~~~i~~sD~~l~P   70 (469)
T PRK09469          1 MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEG-------KMFDGSSIGG---WKGINESDMVLMP   70 (469)
T ss_pred             CCHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEECHHHHHHHHHHCC-------CCCCCCCCCC---CCCCCCCCEEEEE
T ss_conf             99899999999889859999998799885406984899509998589-------7535544035---5667777779998


Q ss_pred             ECCCCEECCCCCCCEEEEEEECCCCCC-CCCCCCHHHHHHHHHHHHHCCCC--CEEECCCCCEEEEECCCCCCC------
Q ss_conf             001245387888770999974033575-21234257778999998610276--402322441799821678888------
Q gi|254780503|r   94 DLSTLSIVPWEMDPTAQIVCDVVDYNG-KEVTYTPRNVLKRVLNFYAQNEL--KPIIAPEIEFYLIAKNEDPDY------  164 (461)
Q Consensus        94 D~~Tl~~lPw~~~~~a~vl~~~~~~dG-~p~~~~PR~iLkr~i~~l~~~G~--~~~~g~E~EF~L~~~~~~~~~------  164 (461)
                      |++|++++||..+.++.|+||++++++ .|++.|||++|||++++++++|+  ++++|.|+|||||+.......      
T Consensus        71 D~~T~~v~Pw~~~~~~~v~cdi~~~~~~~~~~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EFyLfd~~~~~~~~~~~~~  150 (469)
T PRK09469         71 DASTAVLDPFFADSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGTSISGSHV  150 (469)
T ss_pred             CCCCCEECCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCCCCE
T ss_conf             77767888665886199999998878876478897999999999999759963012314338998426444666666612


Q ss_pred             CC-----------CCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCCCEEECCCCCH
Q ss_conf             77-----------78778888-7766787777665442899999899767863110221010127-86420111266521
Q gi|254780503|r  165 PL-----------QPPKGRSG-RSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEG-PAQFEINIRHGDPL  231 (461)
Q Consensus       165 ~~-----------~~~~~~~~-~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~~~~~~~l  231 (461)
                      ..           ....++.+ ++...+++|.+.+.+..++++.+++..|+++||+||+.|||+| |||+||+++|+++|
T Consensus       151 ~id~~e~~~~~g~~~~~~~~~~~p~~~~gy~~~~~~d~~~d~~~~i~~~l~~~Gi~ve~~hhE~a~~GQ~Ei~~~~~~~l  230 (469)
T PRK09469        151 KIDDIEAAWNSGTQYEGGNKGHRPGVKGGYFPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMT  230 (469)
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEECCCCCHH
T ss_conf             02653234567764457766766665676676886432777999999999986997154455677897048971578699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             13789999999999998630660331123211356626899987631368742335886-55215666545777642232
Q gi|254780503|r  232 KLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPD-GSETDNFRYFIGGLQKYIPN  310 (461)
Q Consensus       232 ~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~-~~ls~~~~~fiaGil~h~~a  310 (461)
                      ++||++++||.+||+||++||+.|||||||+.+.+|||||+|+|||  ++|+|+|.+++ +++|+++++||||||+|+++
T Consensus       231 ~aAD~~~~~k~~vk~iA~~~g~~atFmpKP~~~~~Gsg~H~H~Sl~--~~g~n~f~~~~~~~lS~~~~~~iaGll~h~~~  308 (469)
T PRK09469        231 KKADEIQIYKYVVHNVAHAFGKTATFMPKPMVGDNGSGMHCHMSLS--KNGVNLFAGDKYAGLSEQALYYIGGIIKHAKA  308 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9998999999999999997498788821667999957415898842--79943668998777579999999999987686


Q ss_pred             HHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             1222076610134420465575433424334500365022-388652035303587799899999999999998984688
Q gi|254780503|r  311 ALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPF-SDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIE  389 (461)
Q Consensus       311 l~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~-~~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~  389 (461)
                      +++|+||||||||||+|++|||++++||.+||+++||||. ++++++|||+|+||++|||||++||+|+|||+||+++++
T Consensus       309 l~a~~~PtvNSYkRl~p~~~aP~~~~Wg~~NR~~~iRip~~~~~~~~riE~R~~d~~aNPYL~~Aa~l~Agl~Gi~~~l~  388 (469)
T PRK09469        309 INALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVPSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIH  388 (469)
T ss_pred             HHHHHCCCHHHHHHCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             56576588057641489876887432206888621435767898763367407998879899999999999878863899


Q ss_pred             CCCCCCCCCCC-------CHHCCCCCHHHHHHHHHCCHHHHH---HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             87433453000-------311047898999999865989887---35589999999999999999863899789987631
Q gi|254780503|r  390 PTPPTMKSANQ-------EAINLPRGLLEAVTLLENTSHFKD---IFGSQFIDMYANLKRNEFETFMQVISPWEREFLLL  459 (461)
Q Consensus       390 p~~~~~~~~~~-------~~~~LP~sL~eAl~~l~~d~~l~~---~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~  459 (461)
                      |++|+++|+|+       +.++||.||.|||++|++|+.+..   +||++||++|+++||+||++|++.|||||+++||.
T Consensus       389 p~~~~~~~~y~~~~~~~~~~p~lP~sl~eAl~~le~d~~~~~~~g~fg~~~v~~~~~~Kr~E~~~~~~~vt~wE~~~Y~~  468 (469)
T PRK09469        389 PGEAMDKNLYDLPPEEAAEIPQVAGSLEEALNALDADREFLTAGGVFTDDAIDAYIALRREEVDRVRMTPHPVEFELYYS  468 (469)
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             99877776021997786367778447999999987298989865527599999999999999999977899899976148


No 5  
>pfam00120 Gln-synt_C Glutamine synthetase, catalytic domain.
Probab=100.00  E-value=0  Score=608.65  Aligned_cols=254  Identities=40%  Similarity=0.611  Sum_probs=235.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             34257778999998610276402322441799821678888777877888877667877776654428999998997678
Q gi|254780503|r  124 TYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSE  203 (461)
Q Consensus       124 ~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~  203 (461)
                      +.|||++|||++++++++|+++++|+|+|||||+.+.+...+...  .........+++|++...+..++|+++|++.|+
T Consensus         1 P~~PR~~Lk~~~~~~~~~Gl~~~~g~E~EF~l~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~   78 (257)
T pfam00120         1 PRDPRSILKRALARLAELGYTPYFGPEQEFFLFDDVRPGGGPPGG--YPDPRGPYYGGYFPVAPLDEARDIRRDIVKALE   78 (257)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             989799999999999976995979956687998577777677668--879888767775777630318999999999999


Q ss_pred             HHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             63110221010127864201112665211378999999999999863066033112321135662689998763136874
Q gi|254780503|r  204 KQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQ  283 (461)
Q Consensus       204 ~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~  283 (461)
                      .+||+||++|+|+|||||||++.|+++|+|||+++++|++||+||++||+.|||||||+.+.+|||||+|+|||| ++|+
T Consensus        79 ~~Gi~ve~~~~E~gpgQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~HiH~SL~d-~~g~  157 (257)
T pfam00120        79 AAGIPVEGIHHEVAPGQHEIDFRFADALEAADNLQLFKYVVKRVAEKHGLTATFMPKPIFGDNGSGMHTHQSLWD-KDGK  157 (257)
T ss_pred             HCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEEC-CCCC
T ss_conf             779981886657579857996254649888699999999999999983967997035457999852179986675-8897


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCEEEE
Q ss_conf             23358865--521566654577764223212220766101344204655754334243345003650223-886520353
Q gi|254780503|r  284 NIFSNPDG--SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS-DAKTKRIEN  360 (461)
Q Consensus       284 n~f~~~~~--~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~-~~~~~riE~  360 (461)
                      |+|+++++  ++|+++++||||||+|++++++|++||+||||||+|++|||++++||++||+++||||.+ +++++|||+
T Consensus       158 n~f~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~Pt~NSYkRl~p~~~ap~~~~WG~~NR~a~iRip~~~~~~~~riE~  237 (257)
T pfam00120       158 NLFADGDGYAGLSETARHFIGGILKHAPAITAYTAPTVNSYKRLVPGTEAPVYIAWGVRNRSASIRIPRGGGPKAGRVED  237 (257)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCEEEE
T ss_conf             62468887422309999997638775687625368997656515799748666776156786117867789987746786


Q ss_pred             ECCCCCCCHHHHHHHHHHHH
Q ss_conf             03587799899999999999
Q gi|254780503|r  361 RLPSSDTNPYLVLAASLACG  380 (461)
Q Consensus       361 R~~d~~aNPYL~laail~ag  380 (461)
                      |++|++|||||++||||+||
T Consensus       238 R~~da~aNPYL~lAailaAG  257 (257)
T pfam00120       238 RLPDPDANPYLALAALLAAG  257 (257)
T ss_pred             CCCCCCCCHHHHHHHHHHCC
T ss_conf             78878878999999998668


No 6  
>KOG0683 consensus
Probab=100.00  E-value=5.8e-40  Score=282.64  Aligned_cols=365  Identities=19%  Similarity=0.234  Sum_probs=285.6

Q ss_pred             CCCCCCCCCCHHHCCCHHHHHHHHHH-CCCCEEEEEEECCCC-CEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             98777777895558998999999971-798399999978898-3312676198873015677361000002427743466
Q gi|254780503|r    1 MNKNDQSPMNVRGVKNWEQAAKWLKD-NRIEDVECITPDLAG-IPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSP   78 (461)
Q Consensus         1 ~~~~~~~~m~~~~~~~~~~v~~~l~~-~~I~~V~v~~~Dl~G-~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~   78 (461)
                      |+++++++++    +......-.|.. .+-..+.++|+|-.| .+|+|.-..+.-.+     .+.-+-.+.++|++..-.
T Consensus         4 l~~~~~~~~~----~~~~~~~~~L~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~-----~~~~lp~wnydgsst~QA   74 (380)
T KOG0683           4 LAQEKRTRLS----KTAILEYLYLRAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPS-----SISELPIWNYDGSSTGQA   74 (380)
T ss_pred             HHCCCCCCCC----HHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCC-----CCCCCCCCCCCCCCCCCC
T ss_conf             2217321220----3344554045566762799999965756530431322467756-----600076630468636656


Q ss_pred             CCCCCCCCCCEEEEEECCCCEECCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEC
Q ss_conf             55577888778999600124538788877099997403357521234257778999998610276402322441799821
Q gi|254780503|r   79 YLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAK  158 (461)
Q Consensus        79 ~~~~~~~~~D~~l~PD~~Tl~~lPw~~~~~a~vl~~~~~~dG~p~~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~  158 (461)
                          ...+||.+++|.  .+.+.|+..++.-+|+|++++.++.|.+..-|....+++...+-..-.+++|.|.|+.+++.
T Consensus        75 ----~g~nSd~~l~Pv--a~~~dPfr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~  148 (380)
T KOG0683          75 ----PGENSDVYLRPV--AIYPDPFRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDA  148 (380)
T ss_pred             ----CCCCCCEEEEEE--HCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             ----678875178630--00278555899779994336678996642210347887434552345875335678776504


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHH
Q ss_conf             678888777877888877667877776654428--999998997678631102210101278642011126652113789
Q gi|254780503|r  159 NEDPDYPLQPPKGRSGRSILGGQSYSIMGINEF--DEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQ  236 (461)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~--~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~  236 (461)
                      .  ..++..++  ..+++.+++.+|+..+.++.  .++.+.-+.+|...||.+-..+.|++|||||+.+.|+.++.|+||
T Consensus       149 ~--~~~p~gwp--~~GFp~Pqgpyyc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~  224 (380)
T KOG0683         149 L--DGHPFGWP--KGGFPGPQGPYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQ  224 (380)
T ss_pred             C--CCCCCCCC--CCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCHHCCCCCHH
T ss_conf             5--68846477--6688888777000026630124123430688877403023363231347504885445001122004


Q ss_pred             HHHHHHHHHHHHHHHCCCEEECCCCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999863066033112321135-66268999876313687423358865521566654577764223212220
Q gi|254780503|r  237 VFLFKRTIREAAFKHDIYATFMAKPMQNY-PGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVML  315 (461)
Q Consensus       237 ~~~~k~~ik~vA~~~G~~atFmpKP~~~~-~GsG~H~h~SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~  315 (461)
                      ++++|+++++||+++|+.|||-|||..+. +|+|||.++|--.+                    +.+    |..++....
T Consensus       225 lw~aR~il~rVae~~Gviasf~pKp~~g~WngaG~Htn~ST~~m--------------------r~~----~g~~~i~~a  280 (380)
T KOG0683         225 LWMARYILHRVAEKFGVIASFDPKPILGDWNGAGCHTNFSTKEM--------------------REA----GGLKIIEEA  280 (380)
T ss_pred             HHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCHHHH--------------------HHC----CCHHHHHHH
T ss_conf             78999999999998491687258887776667652232021666--------------------605----778999998


Q ss_pred             CCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             76610134420465575433424334500365022388652035303587799899999999999998984688874334
Q gi|254780503|r  316 APYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFSDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTM  395 (461)
Q Consensus       316 ~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~  395 (461)
                      +|.+++|+|..+..|.   .+||.+|+....+   .++.+.+.++-..-+++||||.++.+.+++.+|..+.-.|  ...
T Consensus       281 ~~~ls~rh~~hi~~yd---p~~G~dN~rrltg---~hEt~~i~~Fs~GvAnr~~siri~r~va~~~~Gy~edrrP--~sN  352 (380)
T KOG0683         281 IPKLSKRHREHIAAYD---PKGGKDNERRLTG---RHETGSIDNFSWGVANRNPSIRIPRTVAAEGKGYFEDRRP--SSN  352 (380)
T ss_pred             HHHHHHHHHHHHHHCC---CCCCCCCHHHHCC---CCCCCCCCCCCCCCCCCCCEEEECHHHHCCCCCCCCCCCC--CCC
T ss_conf             6420023044233128---5678633455318---8865552200010346786166213121366531245898--678


Q ss_pred             CCCCC-CHHCCCCCHHHHHHHHH
Q ss_conf             53000-31104789899999986
Q gi|254780503|r  396 KSANQ-EAINLPRGLLEAVTLLE  417 (461)
Q Consensus       396 ~~~~~-~~~~LP~sL~eAl~~l~  417 (461)
                      -+.|. ....+|.+|.+++. ++
T Consensus       353 ~Dpy~Vt~~~~~t~l~~~~~-~~  374 (380)
T KOG0683         353 CDPYAVTLMIIPTTLLEAVE-LE  374 (380)
T ss_pred             CCCCEEEHHHHHHHHHCCCC-HH
T ss_conf             87320107776677753420-33


No 7  
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.91  E-value=2.5e-22  Score=166.73  Aligned_cols=272  Identities=24%  Similarity=0.257  Sum_probs=193.4

Q ss_pred             CCEEECCCCCEEEEECCCCCCCCCCCCCCCC--CCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC
Q ss_conf             6402322441799821678888777877888--877667877----7766544289999989976786311022101012
Q gi|254780503|r  143 LKPIIAPEIEFYLIAKNEDPDYPLQPPKGRS--GRSILGGQS----YSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEE  216 (461)
Q Consensus       143 ~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~--~~~~~~~~~----y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~  216 (461)
                      .-..+|.|+|+||++++.....+...-.|++  +.++..|+-    |--.-.++...|++++-..|.++||++.+-|.|+
T Consensus       214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaipeRV~~FM~Dve~~LyaLGIpaKTrHNEV  293 (724)
T COG3968         214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIPERVSAFMKDVEKELYALGIPAKTRHNEV  293 (724)
T ss_pred             HCCCCCCCCEEEEECHHHCCCCCCEEEECHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             13677843136886110103485626624021289999876122000124479999999889999998088533345655


Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             78642011126652113789999999999998630660331123211356626899987631368742335886552156
Q gi|254780503|r  217 GPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDN  296 (461)
Q Consensus       217 gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~~ls~~  296 (461)
                      +||||||+.-+.++..|+|+..+..++.|.+|++||+..-.+-|||.|.+|||-|.|.|+-. .+|.|++... +..++.
T Consensus       294 APgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGt-d~g~NLLdPg-D~PhdN  371 (724)
T COG3968         294 APGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGT-DDGLNLLDPG-DMPHDN  371 (724)
T ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCC
T ss_conf             87752441001156533207999999999988762558886158756757887756454146-8775657999-998756


Q ss_pred             HH--HHHH----HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC-----------------------------------
Q ss_conf             66--5457----776422321222076610134420465575433-----------------------------------
Q gi|254780503|r  297 FR--YFIG----GLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNN-----------------------------------  335 (461)
Q Consensus       297 ~~--~fia----Gil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~-----------------------------------  335 (461)
                      .+  -|.+    ++-++.+-+-+-.+.--|. .||..+--.|.-+                                   
T Consensus       372 ~QFL~Fc~AvIkaVdkY~~LlRa~~a~AsND-hRLGANEAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg~~v  450 (724)
T COG3968         372 KQFLLFCTAVIKAVDKYADLLRASAANASND-HRLGANEAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLGISV  450 (724)
T ss_pred             CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf             0000215889987888799999987515775-345567799612676403069999999964877666667632443120


Q ss_pred             ------CCCCCCCCEEEEECCCCCCCCEEEEECCCCC---CCHHHHHHHHHHHHHHHHHHCCC--------CCCC-----
Q ss_conf             ------4243345003650223886520353035877---99899999999999998984688--------8743-----
Q gi|254780503|r  336 ------AWGYDNRTTAFRIPFSDAKTKRIENRLPSSD---TNPYLVLAASLACGLLGILQKIE--------PTPP-----  393 (461)
Q Consensus       336 ------~WG~~NR~~~iRip~~~~~~~riE~R~~d~~---aNPYL~laail~agl~Gi~~~l~--------p~~~-----  393 (461)
                            .-|..||+.++-.     ...+||+|.++++   +-|-.+|.++++-.|.-|..+++        +...     
T Consensus       451 lP~v~kdAgDRNRTSPFAF-----TGNkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe~kl~kg~dld~ai~~vl  525 (724)
T COG3968         451 LPAVEKDAGDRNRTSPFAF-----TGNKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLEGKLRKGSDLDAAIEAVL  525 (724)
T ss_pred             CCCCCCCCCCCCCCCCCEE-----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             5566445565567887303-----06613685278654456645788899999999998998877632465788999999


Q ss_pred             -----------CCCCCCCC--------HHCCC--CCHHHHHHHHHCCHHH
Q ss_conf             -----------34530003--------11047--8989999998659898
Q gi|254780503|r  394 -----------TMKSANQE--------AINLP--RGLLEAVTLLENTSHF  422 (461)
Q Consensus       394 -----------~~~~~~~~--------~~~LP--~sL~eAl~~l~~d~~l  422 (461)
                                 ..||.|.+        ..-||  ++--+|+.+|.+++-+
T Consensus       526 ~et~k~h~~vvFnGnGYSeeWhkeAekeRGL~NlrTT~dA~~~L~~~kn~  575 (724)
T COG3968         526 TETVKDHKKVVFNGNGYSEEWHKEAEKERGLPNLRTTVDATKALIADKNV  575 (724)
T ss_pred             HHHHHHHCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
T ss_conf             99998616687579875489999999853863035467788875032678


No 8  
>pfam03951 Gln-synt_N Glutamine synthetase, beta-Grasp domain.
Probab=99.43  E-value=7.3e-13  Score=104.44  Aligned_cols=81  Identities=28%  Similarity=0.465  Sum_probs=69.1

Q ss_pred             CCCEEEEEEECCCCCEEEEEEEHHHHH-HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCC
Q ss_conf             983999999788983312676198873-0156773610000024277434665557788877899960012453878887
Q gi|254780503|r   28 RIEDVECITPDLAGIPRGKMMPSSKFI-SNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLSIVPWEMD  106 (461)
Q Consensus        28 ~I~~V~v~~~Dl~G~~RgK~vp~~~f~-~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~~Tl~~lPw~~~  106 (461)
                      +|++|+++|+|+.|.++..++|++++. +....|+       .|||+++.+   +...++||++|+||++|+.++||..+
T Consensus         1 ~v~~v~~~F~D~~G~~~~~~~~~~~~~~~~~~~g~-------~FDGSSi~G---~~~i~~SDm~L~Pd~~t~~~dP~~~~   70 (84)
T pfam03951         1 GVKFVDLRFTDILGRLKHVRIPATELDEDAFEEGI-------GFDGSSIEG---FAPINESDMYLKPDPSTAYIDPFRPD   70 (84)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEHHHHCHHHHHCCC-------EEECHHEEC---CCCCCCCCEEEEECCCCEEECCCCCC
T ss_conf             97899999978999738999868992877875795-------073000320---00378776699657997188330589


Q ss_pred             C--EEEEEEECCCC
Q ss_conf             7--09999740335
Q gi|254780503|r  107 P--TAQIVCDVVDY  118 (461)
Q Consensus       107 ~--~a~vl~~~~~~  118 (461)
                      .  +++|+|+++++
T Consensus        71 ~~~~~~v~Cdv~~p   84 (84)
T pfam03951        71 PGKTARVICDVYDP   84 (84)
T ss_pred             CCCEEEEEEECCCC
T ss_conf             98789999973088


No 9  
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.66  E-value=2.2e-07  Score=68.44  Aligned_cols=198  Identities=16%  Similarity=0.177  Sum_probs=118.8

Q ss_pred             CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE
Q ss_conf             40232244179982167888877787788887766787777665442899999899767863110221010127864201
Q gi|254780503|r  144 KPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEI  223 (461)
Q Consensus       144 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei  223 (461)
                      .+.+|+|.||+|++.....                        ......+++..+.....     -..+++|....|.|+
T Consensus         8 ~~TlGvEeE~~LVD~~t~~------------------------l~~~a~~vl~~~~~~~~-----~~~v~~El~~~~iEi   58 (371)
T PRK13517          8 RPTLGVEEEFLLVDPVTGE------------------------LSPRATEVLAEAGENGP-----EPRLQKELLRNTVEV   58 (371)
T ss_pred             CCCCEEEEEEEEECCCCCC------------------------CCCCHHHHHHHHHHCCC-----CCCCCHHHHHHEEEE
T ss_conf             9961603214334478678------------------------56644999997343047-----767575655016886


Q ss_pred             EECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC-CCCCC-------------------------CCHHHHHHHHH
Q ss_conf             11266-52113789999999999998630660331123-21135-------------------------66268999876
Q gi|254780503|r  224 NIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMAK-PMQNY-------------------------PGSAMHIHQSV  276 (461)
Q Consensus       224 ~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK-P~~~~-------------------------~GsG~H~h~SL  276 (461)
                      +..++ +.-++.+++...|..+.+.|.++|+...-..- |+...                         .=+|||||+.+
T Consensus        59 ~t~~~~~~~el~~~L~~~r~~l~~aA~~~G~~l~a~GthP~~~~~~~~~t~~~RY~~l~~~~~~~~~~~~i~G~HVHVgv  138 (371)
T PRK13517         59 VTGVCDTVGEAREDLRRTRAVARRAADRRGARLAAAGTHPFSPWSDQPLTDNPRYRELIERTQWWAREQLICGVHVHVGV  138 (371)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECC
T ss_conf             68777999999999999999999999985997872267788886557789647899999999999987614025798347


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHH----CCCC-CCCCCCCCCCCC
Q ss_conf             313687423358865521566654577764223212220766---------10134420----4655-754334243345
Q gi|254780503|r  277 LDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPY---------GNSYRRLV----LDMG-CPVNNAWGYDNR  342 (461)
Q Consensus       277 ~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt---------vNSYkRl~----p~~~-ap~~~~WG~~NR  342 (461)
                      -|          +     +.+-..+-.+.-++|.+.|+.+.+         .-|||..+    |..- .|.+-+|..-.+
T Consensus       139 ~d----------~-----e~av~v~n~lr~~lP~lLALSAnSPf~~G~DTG~aS~R~~~f~~~P~~G~p~~f~s~~~y~~  203 (371)
T PRK13517        139 PS----------R-----EKAVPVLNRLRPWLPHLLALSANSPFWRGADTGYASNRAMLFQQWPTAGPPPQFGSWAEYEA  203 (371)
T ss_pred             CC----------H-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             98----------8-----99999999999998999998438953068667634579999974888899965489899999


Q ss_pred             CE-----------------EEEECCCCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHCC
Q ss_conf             00-----------------36502238865203530358779989--999999999999898468
Q gi|254780503|r  343 TT-----------------AFRIPFSDAKTKRIENRLPSSDTNPY--LVLAASLACGLLGILQKI  388 (461)
Q Consensus       343 ~~-----------------~iRip~~~~~~~riE~R~~d~~aNPY--L~laail~agl~Gi~~~l  388 (461)
                      -.                 -||   .+++-.++|+|++|+...+=  +++||++.|-..-+.+.+
T Consensus       204 ~v~~l~~~G~i~d~~~iwWdvR---Ps~~~~TvE~Rv~D~~~~~~d~~aiaal~~aLv~~~~~~~  265 (371)
T PRK13517        204 FVADLLKTGVILDEGMVYWDIR---PSPNFGTVEVRVADVPLTLRETVALAALVRCLVVTADRRL  265 (371)
T ss_pred             HHHHHHHCCCCCCCCCEEEEEC---CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999986397287882798616---6788885235405888999999999999999999999888


No 10 
>PRK13516 carboxylate-amine ligase; Provisional
Probab=98.60  E-value=1.3e-06  Score=63.38  Aligned_cols=195  Identities=14%  Similarity=0.124  Sum_probs=123.5

Q ss_pred             CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE
Q ss_conf             40232244179982167888877787788887766787777665442899999899767863110221010127864201
Q gi|254780503|r  144 KPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEI  223 (461)
Q Consensus       144 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei  223 (461)
                      .+.+|+|-||.|++.....                        ......+++..+...     ..-..+++|.-..|.|+
T Consensus        11 ~~T~GVEeE~~LvD~~t~~------------------------l~~~a~~vl~~~~~~-----~~~~~v~~El~~~qvEi   61 (372)
T PRK13516         11 PFTLGVELELQVVNPHDYD------------------------LTQASSDLLRAVKNQ-----ITAGEIKPEITESMIEI   61 (372)
T ss_pred             CCCCEEEEEEEEECCCCCC------------------------CCCCHHHHHHHHCCC-----CCCCCCCHHHHHHEEEE
T ss_conf             9821656668776489756------------------------675429999971134-----35665674765134784


Q ss_pred             EECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECC-CCCCC-------------------------CCCHHHHHHHHH
Q ss_conf             11266-5211378999999999999863066033112-32113-------------------------566268999876
Q gi|254780503|r  224 NIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMA-KPMQN-------------------------YPGSAMHIHQSV  276 (461)
Q Consensus       224 ~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp-KP~~~-------------------------~~GsG~H~h~SL  276 (461)
                      +..++ +.-++.+++...|..+.++|.++|+...--. .||..                         ..=+|||||+.+
T Consensus        62 ~T~v~~~~~e~~~~L~~~R~~l~~~A~~~g~~l~a~GthP~~~~~~~~it~~~RY~~l~~~~~~~a~~~~i~G~HVHVgv  141 (372)
T PRK13516         62 ATGVCRDIDQALGQLSAMRDVLVQAADDLNLGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGC  141 (372)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECC
T ss_conf             68366999999999999999999999982987763378988875547789627899999999999998846102688457


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHH----CCCC-CCCCCCCCCCCC
Q ss_conf             313687423358865521566654577764223212220766---------10134420----4655-754334243345
Q gi|254780503|r  277 LDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPY---------GNSYRRLV----LDMG-CPVNNAWGYDNR  342 (461)
Q Consensus       277 ~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt---------vNSYkRl~----p~~~-ap~~~~WG~~NR  342 (461)
                      -|               .+.+-..+..|.-++|.|.||.+.+         .-|||...    |..- .|.+-+|..=.+
T Consensus       142 ~d---------------~e~av~v~n~lr~~LP~LLALSAnSPFw~G~DTG~aS~R~~~~~~~P~aG~pp~f~s~~~y~~  206 (372)
T PRK13516        142 PS---------------GDDAIYLLHGLSRYVPHFIALSASSPYVQGVDTGFASARLNSVSAFPLSGRAPFVLNWQEFEA  206 (372)
T ss_pred             CC---------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             97---------------888999999988887899998428932057758750024657862878898998699999999


Q ss_pred             CE-------EEEEC-------CCCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHH
Q ss_conf             00-------36502-------238865203530358779989--999999999999
Q gi|254780503|r  343 TT-------AFRIP-------FSDAKTKRIENRLPSSDTNPY--LVLAASLACGLL  382 (461)
Q Consensus       343 ~~-------~iRip-------~~~~~~~riE~R~~d~~aNPY--L~laail~agl~  382 (461)
                      ..       .|.=+       -.+++-..+|+|++|...++=  +++||++.|-..
T Consensus       207 ~v~~L~~tG~i~d~~~i~WdvRPs~~~pTvEvRv~D~~~~~~~~~~iAaL~raLv~  262 (372)
T PRK13516        207 YFRKMSYTGVIDSMKDFYWDIRPKPEFGTVEVRVMDTPLTVERAAAIAGYIQALAR  262 (372)
T ss_pred             HHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999871873767825898336899996035403477999999999999999999


No 11 
>TIGR02050 gshA_cyan_rel uncharacterized enzyme; InterPro: IPR011793    This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believed to make glutathione, and the function is unknown..
Probab=98.59  E-value=1.2e-06  Score=63.47  Aligned_cols=210  Identities=18%  Similarity=0.189  Sum_probs=137.2

Q ss_pred             EECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEE
Q ss_conf             23224417998216788887778778888776678777766544-28999998997678631102210101278642011
Q gi|254780503|r  146 IIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGIN-EFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEIN  224 (461)
Q Consensus       146 ~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~  224 (461)
                      .+|+|.||+|+|..+.                      ++.+.. +.-.++.+..+.+..- =.=..+.+|.--.|+|+.
T Consensus         1 TlGvEeE~~LVD~~~~----------------------d~~~~~~~~~~~~~~~~~~~~~~-PGGy~~~~E~~~~~vE~a   57 (297)
T TIGR02050         1 TLGVEEELLLVDPHTY----------------------DLAASSDEAAALVGECREKLGED-PGGYEFKKELFESQVELA   57 (297)
T ss_pred             CCHHEEEHHHCCCCCC----------------------CCCCCCHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHCEEEEE
T ss_conf             9402000212055678----------------------87666104899986077411368-886320422221444465


Q ss_pred             ECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECC-CCCCC-----------------CCC--------HHHHHHHHHH
Q ss_conf             1266-5211378999999999999863066033112-32113-----------------566--------2689998763
Q gi|254780503|r  225 IRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMA-KPMQN-----------------YPG--------SAMHIHQSVL  277 (461)
Q Consensus       225 ~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp-KP~~~-----------------~~G--------sG~H~h~SL~  277 (461)
                      ...+ +.-+|.-.+.-.|..+++.|..+|+...=.+ -||..                 .-|        .|+|||+++-
T Consensus        58 t~v~~~~~eA~~~~~~~r~~l~~~A~~~G~~~~~~gtHPf~~W~~~~~~~~~rY~~~~e~~gy~~~~~Lv~G~HVHVgv~  137 (297)
T TIGR02050        58 TPVCTTLAEALAELREVRARLVEAASDLGLRIAAAGTHPFARWREQELAENPRYQRLLERYGYVARQSLVFGLHVHVGVP  137 (297)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCEEEHHEEECCEEEEECCC
T ss_conf             68447878999999999999999986648636513467753331477786555899998618000001321134770327


Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---------HHHHHHH----CCCC-CCCCCCCCC----
Q ss_conf             136874233588655215666545777642232122207661---------0134420----4655-754334243----
Q gi|254780503|r  278 DIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYG---------NSYRRLV----LDMG-CPVNNAWGY----  339 (461)
Q Consensus       278 d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Ptv---------NSYkRl~----p~~~-ap~~~~WG~----  339 (461)
                      +               .+.+-+-|-+++.++|-|.||.|.+.         -|||+-.    |..- .+..-+|--    
T Consensus       138 s---------------~~~~~~vl~rl~~~lP~LlALSAsSPfw~G~DTgyAS~R~~~~~~~P~~G~p~~f~~w~ay~~~  202 (297)
T TIGR02050       138 S---------------PDDAVAVLNRLLPWLPHLLALSASSPFWQGRDTGYASYRANIFQEWPTAGLPPAFQSWDAYEAY  202 (297)
T ss_pred             C---------------HHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHH
T ss_conf             6---------------4358899865666789999998615111582523778899999846667874222058999999


Q ss_pred             ---CCCCEE----------EEECCCCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHHHHHH---CCCCCCCCCC
Q ss_conf             ---345003----------6502238865203530358779989--9999999999998984---6888743345
Q gi|254780503|r  340 ---DNRTTA----------FRIPFSDAKTKRIENRLPSSDTNPY--LVLAASLACGLLGILQ---KIEPTPPTMK  396 (461)
Q Consensus       340 ---~NR~~~----------iRip~~~~~~~riE~R~~d~~aNPY--L~laail~agl~Gi~~---~l~p~~~~~~  396 (461)
                         -.+|.+          ||.   +++-.=||+|++|+..|+=  +++||++-|=..-..+   ..+-|.+...
T Consensus       203 ~a~l~~tG~i~~~g~l~wDiRP---s~~~gTvEvRv~D~~~~l~~~~~~aaL~rALv~~~~~rYD~~~~p~~~~~  274 (297)
T TIGR02050       203 VADLRETGVIEDDGDLYWDIRP---SSHYGTVEVRVADACLNLEEALALAALIRALVEELLRRYDEWDAPFPVPE  274 (297)
T ss_pred             HHHHHHCCCCCCCCCEEEEEEE---CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             9999854892478866883450---69988268871489988999999999999999999975151227799876


No 12 
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.51  E-value=3.7e-06  Score=60.39  Aligned_cols=200  Identities=15%  Similarity=0.147  Sum_probs=122.4

Q ss_pred             CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE
Q ss_conf             40232244179982167888877787788887766787777665442899999899767863110221010127864201
Q gi|254780503|r  144 KPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEI  223 (461)
Q Consensus       144 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei  223 (461)
                      .+.+|+|.||+|+|.....-.                        ....+.+.+....   .  .-+.+++|.-..|.|+
T Consensus         5 ~~TlGVEeE~~LvD~~t~~l~------------------------~~a~~~l~~~~~~---~--~~~~v~~El~~~qiEi   55 (381)
T PRK13515          5 EFTFGIEEEYLLVDAETLDLA------------------------RSAPAALMEACRD---A--LGEQFAPEMLQSQIEV   55 (381)
T ss_pred             CCCCEEEEEEEEECCCCCCCC------------------------CCHHHHHHHHHHH---H--CCCCCCHHHHHCEEEE
T ss_conf             987452344666758865667------------------------5238999985333---1--2566675666237994


Q ss_pred             EECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECC-CCCCC-------------------------CCCHHHHHHHHH
Q ss_conf             11266-5211378999999999999863066033112-32113-------------------------566268999876
Q gi|254780503|r  224 NIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMA-KPMQN-------------------------YPGSAMHIHQSV  276 (461)
Q Consensus       224 ~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp-KP~~~-------------------------~~GsG~H~h~SL  276 (461)
                      +..++ +.-++.+++...|..+.++|.++|+...--. .||..                         ..=+|||||+.+
T Consensus        56 ~T~v~~~~~e~~~~L~~~r~~l~~aA~~~g~~l~a~GthP~~~w~~~~~t~~~RY~~l~~~~~~~a~~~~i~G~HVHVgv  135 (381)
T PRK13515         56 GTPVCATLAEAREELGRLRQRLAELAAQFGLRIIAAGTHPFADWRRQRPTPKERYAQLFEDLGGVARRSLICGMHVHVGV  135 (381)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECC
T ss_conf             68777999999999999999999999986988983078988887668789607899999999999986432423898368


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHH----CCCC-CCCCCCCCCCCC
Q ss_conf             313687423358865521566654577764223212220766---------10134420----4655-754334243345
Q gi|254780503|r  277 LDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPY---------GNSYRRLV----LDMG-CPVNNAWGYDNR  342 (461)
Q Consensus       277 ~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt---------vNSYkRl~----p~~~-ap~~~~WG~~NR  342 (461)
                      -|               .+.+-.-+..|.-++|.|.|+.+.+         ..|||..+    |..- .|.+-+|..=.+
T Consensus       136 ~d---------------~e~av~v~n~lr~~LP~LLALSAsSPFw~G~DTG~aS~R~~~~~~~P~aG~P~~f~s~~~y~~  200 (381)
T PRK13515        136 PD---------------SEDRMALMNQVLYFLPHLLALSTSSPFWGGRDTGLKSYRRAIFGELPRTGLPPLFPSWAEYQR  200 (381)
T ss_pred             CC---------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             98---------------899999999999888999999708931047877644168768864888899977689999999


Q ss_pred             -------------CEEEEE-CCCCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHC
Q ss_conf             -------------003650-2238865203530358779989--99999999999989846
Q gi|254780503|r  343 -------------TTAFRI-PFSDAKTKRIENRLPSSDTNPY--LVLAASLACGLLGILQK  387 (461)
Q Consensus       343 -------------~~~iRi-p~~~~~~~riE~R~~d~~aNPY--L~laail~agl~Gi~~~  387 (461)
                                   ..+|.- .-.+++-..+|+|++|...+.=  +++||++.|-..-+-..
T Consensus       201 ~v~~l~~tG~i~d~~~i~WdvRPs~~~pTlEvRv~D~~~~~~~~~~iAal~raLv~~~~~~  261 (381)
T PRK13515        201 YVALLVRTGCIDDDGKIWWDLRPSPRFPTLELRICDVCPRLDDALALAALFRALVRHLYRL  261 (381)
T ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999986599687880589825789999625750688799999999999999999999987


No 13 
>PRK13518 carboxylate-amine ligase; Provisional
Probab=98.40  E-value=7.1e-06  Score=58.51  Aligned_cols=195  Identities=18%  Similarity=0.165  Sum_probs=118.7

Q ss_pred             CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE
Q ss_conf             40232244179982167888877787788887766787777665442899999899767863110221010127864201
Q gi|254780503|r  144 KPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEI  223 (461)
Q Consensus       144 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei  223 (461)
                      -..+|+|-||.|.+......                      .+   ..+.+    ......+..-+.+++|.-.+|.|+
T Consensus        12 m~TlGVEEE~~LVD~~t~~~----------------------~~---~~~~v----~~~~~~~~~~~~v~~El~~~qvEi   62 (357)
T PRK13518         12 MGTLGVEEEFFVVDEHGRPT----------------------AG---TDELV----YEGEPPEPLAGRLDHELFKFVIET   62 (357)
T ss_pred             CCCCEEEEEEEEECCCCCCC----------------------CC---CHHHH----HHCCCCCCCCCCCCHHHHCCEEEE
T ss_conf             78641446788877997656----------------------67---46899----823555324565574665547994


Q ss_pred             EECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECC-CCCCC-------------------------CCCHHHHHHHHH
Q ss_conf             11266-5211378999999999999863066033112-32113-------------------------566268999876
Q gi|254780503|r  224 NIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMA-KPMQN-------------------------YPGSAMHIHQSV  276 (461)
Q Consensus       224 ~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp-KP~~~-------------------------~~GsG~H~h~SL  276 (461)
                      +..++ +.-++.+++...|..+.++|.++|+...=.. -||..                         ..=+|||||+.+
T Consensus        63 ~T~vc~~~~e~~~~L~~~R~~l~~aA~~~G~~l~a~GThP~~~w~~~~it~~~RY~~l~~~~~~~ar~~li~G~HVHVGv  142 (357)
T PRK13518         63 QTPTLNDVAAAPDALREVRDALVAHAEEHGFRIAAAGLHPGAKWRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHIHVGV  142 (357)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECC
T ss_conf             58676999999999999999999999986988996268988887768889977899999998899998746103799617


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---------HHHHHHH----CCCC-CCCCCCCCCCCC
Q ss_conf             3136874233588655215666545777642232122207661---------0134420----4655-754334243345
Q gi|254780503|r  277 LDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYG---------NSYRRLV----LDMG-CPVNNAWGYDNR  342 (461)
Q Consensus       277 ~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Ptv---------NSYkRl~----p~~~-ap~~~~WG~~NR  342 (461)
                      -|               -+.+-..+-.+..++|.|.||.+.+.         .|||-..    |..- .|.+-+|..=.+
T Consensus       143 ~d---------------~e~av~v~n~lr~~LP~LlALSAnSPFw~G~DTG~aS~R~~~~~~~P~aG~P~~f~s~~~y~~  207 (357)
T PRK13518        143 DD---------------PDKAVWVANELRWHMPVLLALSANSPYWNGFDTGLASARAKIFEALPNTGMPTAFEDYEAFQA  207 (357)
T ss_pred             CC---------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             97---------------899999999888778999999717942048888751089999972764799954489999999


Q ss_pred             C-------------EEEEE-CCCCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHH
Q ss_conf             0-------------03650-2238865203530358779989--999999999999
Q gi|254780503|r  343 T-------------TAFRI-PFSDAKTKRIENRLPSSDTNPY--LVLAASLACGLL  382 (461)
Q Consensus       343 ~-------------~~iRi-p~~~~~~~riE~R~~d~~aNPY--L~laail~agl~  382 (461)
                      .             .+|.= .-.+++-.-+|+|++|...+.=  +++||++.|-..
T Consensus       208 ~v~~L~~tG~I~d~~~i~WDiRPs~~~pTvEvRV~D~~~~~~~~~~lAaL~raLv~  263 (357)
T PRK13518        208 FERRMVETGSIEDRGELWYDVRPHSGHGTVEVRAPDAQADPDVVLAFVEYAHALVT  263 (357)
T ss_pred             HHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999973982778845899442699997257657888998999999999999999


No 14 
>pfam04107 GCS2 Glutamate-cysteine ligase family 2(GCS2). Also known as gamma-glutamylcysteine synthetase and gamma-ECS (EC:6.3.2.2). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.
Probab=98.10  E-value=3.6e-05  Score=53.87  Aligned_cols=196  Identities=15%  Similarity=0.054  Sum_probs=109.4

Q ss_pred             EECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEE
Q ss_conf             23224417998216788887778778888776678777766544289999989976786311022101012786420111
Q gi|254780503|r  146 IIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINI  225 (461)
Q Consensus       146 ~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~  225 (461)
                      .+|+|.||+|+|.......+                        ....+.......+    ..-..+.+|--.||.|++.
T Consensus         2 t~GvEeE~~lvD~~t~~l~~------------------------~~~~~~~~~~~~~----~~~~~~~~e~~~~qiEist   53 (291)
T pfam04107         2 TLGVEEEFGVVDLLGGDLRG------------------------WSPILEDEAKIGL----SLGGGFVKELPGGQVELST   53 (291)
T ss_pred             CEEEEEEEEEECCCCCCCCC------------------------CCHHHHHHHCCCC----CCCCCEEECCCCCEEEECC
T ss_conf             63778878777589878788------------------------6678874200255----6689653326898899714


Q ss_pred             CCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEE--------------ECCCCCC-------C---CCC-----HHHHHHHH
Q ss_conf             266-5211378999999999999863066033--------------1123211-------3---566-----26899987
Q gi|254780503|r  226 RHG-DPLKLADQVFLFKRTIREAAFKHDIYAT--------------FMAKPMQ-------N---YPG-----SAMHIHQS  275 (461)
Q Consensus       226 ~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~at--------------FmpKP~~-------~---~~G-----sG~H~h~S  275 (461)
                      .++ +.-++++.+..++..++++|.++|+...              ++|||--       .   ..|     +|||+|++
T Consensus        54 ~p~~~~~e~~~~l~~~~~~l~~~a~~~g~~l~~~Gt~P~~~~~~~~~~~~~RY~~m~~~~~~~g~~~~~mm~~g~hVhV~  133 (291)
T pfam04107        54 PPLESLAEAAEEISQHREELRHVADELGLGLLGLGTHPFALRSRDPVMPKGRYRRMYEYMPRVGVYGRQMMVAGCHVQVN  133 (291)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEC
T ss_conf             22189999999999999999999998298068227787788754776888425799999987533789897722258854


Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHH----CCC-CCCCCCCCCCCC
Q ss_conf             6313687423358865521566654577764223212220766---------10134420----465-575433424334
Q gi|254780503|r  276 VLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPY---------GNSYRRLV----LDM-GCPVNNAWGYDN  341 (461)
Q Consensus       276 L~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt---------vNSYkRl~----p~~-~ap~~~~WG~~N  341 (461)
                      +=+.         +     +..-.-+.-+..++|-+.|++|.+         ..|||-..    |.. -.|...+|+.=.
T Consensus       134 vd~~---------~-----e~~~~~~~~~~~~~P~llALsAnSPf~~G~dtG~~S~R~~iw~~~p~~G~~p~~~~~~~~~  199 (291)
T pfam04107       134 IDSS---------S-----EAIMAVLRLVRALLPVLLALSANSPFWGGRDTGYASTRALIFTQTPQAGPLPLAFEDGAFE  199 (291)
T ss_pred             CCCC---------C-----HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             7887---------5-----8899999999888899999972982335887641317789874089999999879838999


Q ss_pred             -------CCEEEEEC--------CCCCCCCEEEEECCCCCCCHHHHHHHHHHHH-HHH
Q ss_conf             -------50036502--------2388652035303587799899999999999-998
Q gi|254780503|r  342 -------RTTAFRIP--------FSDAKTKRIENRLPSSDTNPYLVLAASLACG-LLG  383 (461)
Q Consensus       342 -------R~~~iRip--------~~~~~~~riE~R~~d~~aNPYL~laail~ag-l~G  383 (461)
                             ++-+|.+.        .+....+.+|+|..|++.+|=..+++++-+. +|.
T Consensus       200 ~yv~~ll~~~~i~~~~~~~~d~r~~~~~~~t~E~r~~ds~~f~~vr~~~~~e~r~~d~  257 (291)
T pfam04107       200 RYARYALDTGIIFVRRRLWWDGRPPGLPGETLELRIHDTTAFPPVRLRALLEARLLDA  257 (291)
T ss_pred             HHHHHHHCCCCEEECCCCEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9999997189769669826831789899768899983046987999999999988741


No 15 
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=98.02  E-value=6.7e-05  Score=52.08  Aligned_cols=214  Identities=20%  Similarity=0.286  Sum_probs=121.6

Q ss_pred             CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE
Q ss_conf             40232244179982167888877787788887766787777665442899999899767863110221010127864201
Q gi|254780503|r  144 KPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEI  223 (461)
Q Consensus       144 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei  223 (461)
                      .+..|+|.||||.+..+                      |++.+.  ...+++.+...     +.-.-+.+|.--.+.|+
T Consensus         2 ~ltlGvE~E~~lvd~~g----------------------~dl~~~--s~~ii~~~~~~-----~~~~~~~~e~~e~~vE~   52 (369)
T COG2170           2 RLTLGVELEFQLVDPQG----------------------YDLVGS--SDAIIEALKGK-----VTAGHLKHEITESTVEL   52 (369)
T ss_pred             CCCCCEEEEEEECCCCC----------------------CCCCCC--CHHHHHHCCCC-----CCCCCHHHHHHHHHHCC
T ss_conf             96653379999607777----------------------666454--17899853788-----88751168888774303


Q ss_pred             EECCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCC-----CCHHHHHHHHHHHCC---CCCCCCCCC---C
Q ss_conf             112665-2113789999999999998630660331-12321135-----662689998763136---874233588---6
Q gi|254780503|r  224 NIRHGD-PLKLADQVFLFKRTIREAAFKHDIYATF-MAKPMQNY-----PGSAMHIHQSVLDIK---SNQNIFSNP---D  290 (461)
Q Consensus       224 ~~~~~~-~l~aaD~~~~~k~~ik~vA~~~G~~atF-mpKP~~~~-----~GsG~H~h~SL~d~~---~g~n~f~~~---~  290 (461)
                      .-.+++ .-+|+-..--.|..+++.|..||+..+- -.-||.+.     +-|. |.| ++.+..   +.+++-++-   -
T Consensus        53 ~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~p-rY~-~~ie~~~y~~~q~~v~G~HVHV  130 (369)
T COG2170          53 ATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNP-RYQ-RLIERTGYLGRQMTVAGQHVHV  130 (369)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHCCCCCCH-HHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_conf             40366659999999999999999974423803323678850255652478872-399-9999851677621564577883


Q ss_pred             C-CCHHHHHHHHHHHHHHHHHHHHHCCCCC---------HHHHHHH----CCC-CCCCCCCCCC--------------CC
Q ss_conf             5-5215666545777642232122207661---------0134420----465-5754334243--------------34
Q gi|254780503|r  291 G-SETDNFRYFIGGLQKYIPNALVMLAPYG---------NSYRRLV----LDM-GCPVNNAWGY--------------DN  341 (461)
Q Consensus       291 ~-~ls~~~~~fiaGil~h~~al~a~~~Ptv---------NSYkRl~----p~~-~ap~~~~WG~--------------~N  341 (461)
                      | ..++.+-..+-+++.++|-+.|+.|++.         -|+|+..    |.. -.|.+-+|+.              +|
T Consensus       131 Gi~~~d~~~~~l~~l~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~~g~pp~f~sw~~f~~~~~~~~~tG~I~~  210 (369)
T COG2170         131 GIPSPDDAMYLLHRLLRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPTNGLPPAFQSWAAFEAFFRDQLETGTIDS  210 (369)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             68988999999998876505887650378531673231356557663207767999651688999999999887364144


Q ss_pred             CC---EEEEECCCCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHCCCCC
Q ss_conf             50---036502238865203530358779989--999999999999898468887
Q gi|254780503|r  342 RT---TAFRIPFSDAKTKRIENRLPSSDTNPY--LVLAASLACGLLGILQKIEPT  391 (461)
Q Consensus       342 R~---~~iRip~~~~~~~riE~R~~d~~aNPY--L~laail~agl~Gi~~~l~p~  391 (461)
                      ..   -.|| |  ++.-.++|+|++|+-.||=  ++++|++-|-+.-+....+..
T Consensus       211 ~~~lwwdIR-P--sph~gTlEvRi~D~~~~l~~~~aivaL~~Alv~~ll~~~d~~  262 (369)
T COG2170         211 MGDLWWDIR-P--SPHLGTLEVRICDTVLNLAELLAIVALIHALVVWLLRRRDAD  262 (369)
T ss_pred             CCCEEEECC-C--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             663378613-6--887782588844787999999999999999999996388999


No 16 
>KOG0683 consensus
Probab=97.55  E-value=0.00046  Score=46.59  Aligned_cols=243  Identities=17%  Similarity=0.130  Sum_probs=118.0

Q ss_pred             CCEEEEEECCCCEECCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCC---CEEECCCCCEEEEECCCCC
Q ss_conf             778999600124538788877099997403357521234257778999998610-276---4023224417998216788
Q gi|254780503|r   87 GDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQ-NEL---KPIIAPEIEFYLIAKNEDP  162 (461)
Q Consensus        87 ~D~~l~PD~~Tl~~lPw~~~~~a~vl~~~~~~dG~p~~~~PR~iLkr~i~~l~~-~G~---~~~~g~E~EF~L~~~~~~~  162 (461)
                      +..+..=|-.++.-.|-  +.+-++.|.-...++++....|+...++..-.+.. -|-   -+..||+-+++++...-..
T Consensus        97 ~Nilv~c~~~~~~~~P~--~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~VGa  174 (380)
T KOG0683          97 NNILVMCDTYDFDGKPT--ETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGVGA  174 (380)
T ss_pred             CCEEEEEECCCCCCCCC--CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf             97799943366789966--4221034788743455234587533567877650456884647766888887770000266


Q ss_pred             CC--CCC--------------CCCCCC------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
Q ss_conf             88--777--------------877888------87766787777665442899999899767863110221010127864
Q gi|254780503|r  163 DY--PLQ--------------PPKGRS------GRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQ  220 (461)
Q Consensus       163 ~~--~~~--------------~~~~~~------~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ  220 (461)
                      ..  ..+              ...+..      ..-..-+++..+..-|...-.+.-|.+..+..|+ +-+++.+.-+|.
T Consensus       175 d~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gv-iasf~pKp~~g~  253 (380)
T KOG0683         175 DRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGV-IASFDPKPILGD  253 (380)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHCE-EEEECCCCCCCC
T ss_conf             3012412343068887740302336323134750488544500112200478999999999998491-687258887776


Q ss_pred             CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE--CCCCCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             2011126652113789999999999998630660331--12321135662689-99876313687423358865521566
Q gi|254780503|r  221 FEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATF--MAKPMQNYPGSAMH-IHQSVLDIKSNQNIFSNPDGSETDNF  297 (461)
Q Consensus       221 ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atF--mpKP~~~~~GsG~H-~h~SL~d~~~g~n~f~~~~~~ls~~~  297 (461)
                      +--+=-|+.            ...++.-..||+.+..  +||+      |--| .|++.||.++|+.     +      .
T Consensus       254 WngaG~Htn------------~ST~~mr~~~g~~~i~~a~~~l------s~rh~~hi~~ydp~~G~d-----N------~  304 (380)
T KOG0683         254 WNGAGCHTN------------FSTKEMREAGGLKIIEEAIPKL------SKRHREHIAAYDPKGGKD-----N------E  304 (380)
T ss_pred             CCCCCCCCC------------CCHHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHCCCCCCCC-----C------H
T ss_conf             667652232------------0216666057789999986420------023044233128567863-----3------4


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC--CCCCCCCCCCCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHH
Q ss_conf             6545777642232122207661013442046557--54334243345003650223--8865203530358779989999
Q gi|254780503|r  298 RYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGC--PVNNAWGYDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVL  373 (461)
Q Consensus       298 ~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~a--p~~~~WG~~NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~l  373 (461)
                      |...+                        ++ +.  -+..+||.-||.+.||||..  ......+|.|-|++.+.||++-
T Consensus       305 rrltg------------------------~h-Et~~i~~Fs~GvAnr~~siri~r~va~~~~Gy~edrrP~sN~Dpy~Vt  359 (380)
T KOG0683         305 RRLTG------------------------RH-ETGSIDNFSWGVANRNPSIRIPRTVAAEGKGYFEDRRPSSNCDPYAVT  359 (380)
T ss_pred             HHHCC------------------------CC-CCCCCCCCCCCCCCCCCEEEECHHHHCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             55318------------------------88-655522000103467861662131213665312458986788732010


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999998984
Q gi|254780503|r  374 AASLACGLLGILQ  386 (461)
Q Consensus       374 aail~agl~Gi~~  386 (461)
                      .+++-.-|.....
T Consensus       360 ~~~~~t~l~~~~~  372 (380)
T KOG0683         360 LMIIPTTLLEAVE  372 (380)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             7776677753420


No 17 
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=95.71  E-value=0.097  Score=31.29  Aligned_cols=76  Identities=9%  Similarity=0.134  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHH-H
Q ss_conf             998997678631102210101278642011126652113789999999999998630660331123211356626899-9
Q gi|254780503|r  195 IDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHI-H  273 (461)
Q Consensus       195 l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~-h  273 (461)
                      ++-+.++|...|+.=-.+|+-...-|.-+.+.+-....        |.+=-..+.+-=.+|-|---||.+.-=||.-. -
T Consensus       156 Y~iM~~Ympkvg~~glDMm~rtctiQVNLD~sse~dm~--------rk~rvs~~Lqp~ataLFANSpFtegkpng~lS~R  227 (456)
T COG3572         156 YAIMTRYMPKVGVKGLDMMTRTCTIQVNLDFSSETDMR--------RKMRVSLALQPLATALFANSPFTEGKPNGLLSWR  227 (456)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHEEEEEECCCCCHHHH--------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             99999987652883155553101158752367303499--------9999986541899999706976579876411066


Q ss_pred             HHHHH
Q ss_conf             87631
Q gi|254780503|r  274 QSVLD  278 (461)
Q Consensus       274 ~SL~d  278 (461)
                      -.+|.
T Consensus       228 ~~iW~  232 (456)
T COG3572         228 GDIWR  232 (456)
T ss_pred             HHHHH
T ss_conf             44542


No 18 
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=91.42  E-value=0.83  Score=25.19  Aligned_cols=58  Identities=22%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             CHHHHHHHCC-----CCCCCCCCCCCCCCCEE---EEECCCCCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHH
Q ss_conf             1013442046-----55754334243345003---6502238865203530358779989-9999999999998
Q gi|254780503|r  319 GNSYRRLVLD-----MGCPVNNAWGYDNRTTA---FRIPFSDAKTKRIENRLPSSDTNPY-LVLAASLACGLLG  383 (461)
Q Consensus       319 vNSYkRl~p~-----~~ap~~~~WG~~NR~~~---iRip~~~~~~~riE~R~~d~~aNPY-L~laail~agl~G  383 (461)
                      --||+-+..|     ..-|+...|.++ =|+.   ||+      .+.||.|..|+.--.+ .++.|++.+-|+.
T Consensus       253 g~tFrdf~~G~~~~~g~~PT~~Dw~~H-LsTlFPeVRl------K~yLE~R~aDa~p~~~~~a~~A~~~gLlyD  319 (390)
T TIGR03444       253 GVTFADWVAGRDPVIGRRPTRADLDYH-LTTLFPPVRP------RGWLELRYLDAQPGDGWPVPVATLTALLDD  319 (390)
T ss_pred             CCCHHHHHCCCCCCCCCCCCHHHHHHH-HHCCCCCCCC------CCEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             977999966887778999998999987-5237986555------563475016778813000999999998428


No 19 
>pfam08759 DUF1792 Domain of unknown function (DUF1792). This putative domain is probably missannotated as a glycosyl transferase 8 family member. This domain is found at the C-terminus of proteins that also contain the glycosyl transferase domain at the N-terminus.
Probab=81.92  E-value=1.6  Score=23.35  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=52.8

Q ss_pred             HHHHHHHHHH-HHHCCCEEECCCCCCCCC---CHHHHHHH--HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998-630660331123211356---62689998--76313687423358865521566654577764223212
Q gi|254780503|r  239 LFKRTIREAA-FKHDIYATFMAKPMQNYP---GSAMHIHQ--SVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNAL  312 (461)
Q Consensus       239 ~~k~~ik~vA-~~~G~~atFmpKP~~~~~---GsG~H~h~--SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~  312 (461)
                      .++..++... ...=|..||+.+|+.+..   -|+-++|.  +||.  |..-++-.+....+..+    --|...+..+-
T Consensus        69 ~~~~~~~k~l~~~~~Y~~tfiSRpY~d~~dKs~~~~~F~~lK~iW~--~rdIliVEG~~sR~GvG----NdLF~naksI~  142 (225)
T pfam08759        69 RNGDFIKKLLVPNRWYGSTFISRPYIDYKDKSKSARYFHKLKQIWQ--NRDILIVEGEKSRSGVG----NDLFDNAKSIK  142 (225)
T ss_pred             HHHHHHHHHHCCCCEECCEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCC----HHHHHCCCEEE
T ss_conf             8689999974567746110423322121222576999999999847--99089992365114677----15563664078


Q ss_pred             HHCCCCCHHHHHHHC
Q ss_conf             220766101344204
Q gi|254780503|r  313 VMLAPYGNSYRRLVL  327 (461)
Q Consensus       313 a~~~PtvNSYkRl~p  327 (461)
                      =+.||+-|+|.++..
T Consensus       143 rIicPsknAy~~yd~  157 (225)
T pfam08759       143 RIICPSKNAYSKYDE  157 (225)
T ss_pred             EEECCCHHHHHHHHH
T ss_conf             895787747999999


No 20 
>KOG0558 consensus
Probab=72.88  E-value=3.4  Score=21.16  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=41.8

Q ss_pred             CCHHHHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             442899999899767863-1102210101278642011126652113789999999999998630660331123
Q gi|254780503|r  188 INEFDEIIDDIWKFSEKQ-GLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAK  260 (461)
Q Consensus       188 ~~~~~~~l~~i~~~l~~~-Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK  260 (461)
                      ......|-+.+++.|..+ -||-               |.|.|-+ .+|.++.+|+-.|++|.+.|...||||-
T Consensus       245 t~plrGf~rAMvKtMt~alkiPH---------------F~y~dEI-n~~sLvklr~elk~~a~e~~IKltfmPf  302 (474)
T KOG0558         245 TVPLRGFSRAMVKTMTEALKIPH---------------FGYVDEI-NCDSLVKLRQELKENAKERGIKLTFMPF  302 (474)
T ss_pred             EEECHHHHHHHHHHHHHHHCCCC---------------CCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEHHH
T ss_conf             12123478999999888745885---------------4424424-7688999999986666645732652378


No 21 
>pfam06877 DUF1260 Protein of unknown function (DUF1260). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=65.58  E-value=10  Score=17.98  Aligned_cols=93  Identities=15%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             77789999986102764023224417998216788887778778888776678777766544289999989976786311
Q gi|254780503|r  128 RNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGL  207 (461)
Q Consensus       128 R~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi  207 (461)
                      ...-+++++.+.+.|..+-.-.++||++.-.+                                +.-++.+...+.+.|.
T Consensus         2 ~~~~~~vl~~L~e~G~dl~~~~~Ieh~~~f~~--------------------------------~~~~e~~a~~~~~~gy   49 (103)
T pfam06877         2 DDETGEVLAALLEDGDDLSAPYEIEHHFYFED--------------------------------EDDLEKAAEEAFKLGY   49 (103)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCEEEEEEEEECC--------------------------------HHHHHHHHHHHHHCCC
T ss_conf             54179999999975998678877779998099--------------------------------9999999999997698


Q ss_pred             CHHHHHC--CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             0221010--127864201112665211378999999999999863066
Q gi|254780503|r  208 EIDTLIH--EEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDI  253 (461)
Q Consensus       208 ~ve~~~~--E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~  253 (461)
                      .|+....  |.+.+-|.+.+.....+...+=.-.. .-+-.+|.++|-
T Consensus        50 ~v~~~~~~~ed~~~~~~~~~~~~~~~~~~~I~~~~-~~l~~lA~~~~g   96 (103)
T pfam06877        50 EVEDAEELEEDGDGVWCLDVSREMTLDYEDIDAQE-EELEALAEKFGG   96 (103)
T ss_pred             EEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHH-HHHHHHHHHHCC
T ss_conf             36664414668984189999995568989999999-999999999395


No 22 
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=56.68  E-value=15  Score=16.96  Aligned_cols=52  Identities=17%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC-CCHHHHHHHHHH
Q ss_conf             01112665211378999999999999863066033112321135-662689998763
Q gi|254780503|r  222 EINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNY-PGSAMHIHQSVL  277 (461)
Q Consensus       222 Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~-~GsG~H~h~SL~  277 (461)
                      .+-+-|.-++..|-.....|++.+.. +++|..+.|-=.|..|. ||   |+|+=|-
T Consensus       305 ~ViIVPGYGmAVAqAQh~v~el~~~L-~~~g~~V~faIHPVAGRMPG---HMNVLLA  357 (459)
T PRK09444        305 SVIITPGYGMAVAQAQYPVAEITEKL-RARGINVRFGIHPVAGRLPG---HMNVLLA  357 (459)
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCC---CCEEEEE
T ss_conf             49996680899998889999999999-97798589983646788886---4013665


No 23 
>TIGR01515 branching_enzym 1,4-alpha-glucan branching enzyme; InterPro: IPR006407   This entry represents the core region of the glycogen branching enzymes, which are responsible for the transfer of chains of approximately seven alpha(1,4)-linked glucosyl residues to other similar chains (in new alpha-(1,6) linkages) in the biosynthesis of glycogen . The branching enzyme is responsible for the degree of alpha(1,6) branch linkages found in polysaccharides .; GO: 0003844 14-alpha-glucan branching enzyme activity, 0005978 glycogen biosynthetic process.
Probab=53.61  E-value=16  Score=16.64  Aligned_cols=107  Identities=18%  Similarity=0.287  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEEECCCCEECCCCCCCEEEEEEECCCCCC-------------CCC-----------CCCHHHHHHHHHHHH
Q ss_conf             78887789996001245387888770999974033575-------------212-----------342577789999986
Q gi|254780503|r   83 NERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNG-------------KEV-----------TYTPRNVLKRVLNFY  138 (461)
Q Consensus        83 ~~~~~D~~l~PD~~Tl~~lPw~~~~~a~vl~~~~~~dG-------------~p~-----------~~~PR~iLkr~i~~l  138 (461)
                      ...+|.++|+-||=.+..-  -+|.||.++|++- .|-             +|+           ...=|.+..+.+-+.
T Consensus        85 ~~~~G~~~lkaDPyA~y~e--vRP~tASlv~~l~-~d~~W~~~r~~~~~~~~PvsvYElHLGSW~~lSY~eL~~~L~pYv  161 (608)
T TIGR01515        85 VDANGEIRLKADPYAFYAE--VRPETASLVADLE-QDEEWLEKRKAKDPYEKPVSVYELHLGSWRKLSYRELADQLIPYV  161 (608)
T ss_pred             ECCCCCEEECCCCCCCCCC--CCCCCEEEEECCH-HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             7689875643675301246--8987402552585-358999985210220088289984000054212788863101578


Q ss_pred             HCCCCCEEECCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf             1027640232244179982167888877787-78888776678777-76654428999998997678631102
Q gi|254780503|r  139 AQNELKPIIAPEIEFYLIAKNEDPDYPLQPP-KGRSGRSILGGQSY-SIMGINEFDEIIDDIWKFSEKQGLEI  209 (461)
Q Consensus       139 ~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~y-~~~~~~~~~~~l~~i~~~l~~~Gi~v  209 (461)
                      +++||+     =+|-  +       .....| .+.-|+..  +++| -++|+..-+||+. +++.|.++||.|
T Consensus       162 K~~GFT-----HiEL--L-------Pv~EHPFDGSWGYQ~--TGyYAPTsRfG~P~Df~y-fvD~~H~~giGV  217 (608)
T TIGR01515       162 KELGFT-----HIEL--L-------PVAEHPFDGSWGYQV--TGYYAPTSRFGTPDDFRY-FVDACHQAGIGV  217 (608)
T ss_pred             HHCCCE-----EEEE--C-------CCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHH-HHHHHHHCCCCE
T ss_conf             750871-----2541--4-------664278878655357--755278888877456899-999998658957


No 24 
>PRK11410 hypothetical protein; Provisional
Probab=51.59  E-value=13  Score=17.40  Aligned_cols=30  Identities=23%  Similarity=0.228  Sum_probs=18.2

Q ss_pred             EEEEEEECCCCCCCC---CCCCHHHHHHHHHHHH
Q ss_conf             099997403357521---2342577789999986
Q gi|254780503|r  108 TAQIVCDVVDYNGKE---VTYTPRNVLKRVLNFY  138 (461)
Q Consensus       108 ~a~vl~~~~~~dG~p---~~~~PR~iLkr~i~~l  138 (461)
                      .|.|..+ ...||..   +..--|+-|.|+++-+
T Consensus       128 PA~VaLW-Rg~dGrL~~fv~~m~R~GLAklLE~l  160 (570)
T PRK11410        128 PAQVALW-RGADGRLSHFVVLMQRSGLAKLLEPL  160 (570)
T ss_pred             CCCEEEE-ECCCCCHHHEEEEEECCHHHHHHHHH
T ss_conf             4003656-57999812448888412089998766


No 25 
>cd01141 TroA_d Periplasmic binding protein TroA_d.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=49.05  E-value=19  Score=16.30  Aligned_cols=28  Identities=14%  Similarity=0.223  Sum_probs=16.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             32113566268999876313687423358
Q gi|254780503|r  260 KPMQNYPGSAMHIHQSVLDIKSNQNIFSN  288 (461)
Q Consensus       260 KP~~~~~GsG~H~h~SL~d~~~g~n~f~~  288 (461)
                      ++..-..|++..++- |...-||+|+|.|
T Consensus       159 ~~~~~~~g~~s~~~~-li~~AGG~Ni~~D  186 (186)
T cd01141         159 KGLWYMPGGNSYVAK-MLRDAGGRYLSAE  186 (186)
T ss_pred             CCCEEECCCCCHHHH-HHHHCCCEEECCC
T ss_conf             895377189878999-9998499572589


No 26 
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase; InterPro: IPR011556   These sequences represent one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other group is represented by IPR006335 from INTERPRO. This form is found in plants (with a probable transit peptide), root nodule and other bacteria, but not Escherichia coli and closely related species. ; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process, 0009507 chloroplast.
Probab=47.98  E-value=20  Score=16.07  Aligned_cols=180  Identities=17%  Similarity=0.153  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             77789999986102764023224417998216788887778778888776678777766544289999989976786311
Q gi|254780503|r  128 RNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGL  207 (461)
Q Consensus       128 R~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi  207 (461)
                      |.-|-+.++.=.+..=+-++|+|.|=+.|++++-...                 .|.-.+  -.-++|+-|.+.-.-+-|
T Consensus         5 rddL~~yl~aGckpK~qwRiGTEHEKfgf~k~~l~p~-----------------~Ye~~~--GI~~LLng~a~RfgWq~v   65 (446)
T TIGR01436         5 RDDLVAYLEAGCKPKEQWRIGTEHEKFGFKKRDLRPI-----------------KYEEKA--GIAELLNGIAERFGWQKV   65 (446)
T ss_pred             HHHHHHHHHCCCCCHHCCCCCCCCCCCCEECCCCCCC-----------------CCCCCC--CHHHHHHHHHHHCCCCEE
T ss_conf             8899999973788203102464000022231466798-----------------855555--678998887644067245


Q ss_pred             ----CHHHHHCCCC------CCCCCEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCC---EEE-----------CCCC-
Q ss_conf             ----0221010127------86420111266-52113789999999999998630660---331-----------1232-
Q gi|254780503|r  208 ----EIDTLIHEEG------PAQFEINIRHG-DPLKLADQVFLFKRTIREAAFKHDIY---ATF-----------MAKP-  261 (461)
Q Consensus       208 ----~ve~~~~E~g------pGQ~Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~---atF-----------mpKP-  261 (461)
                          .|-......+      .||||++=.|. ..=+++|.+--==+=+++||.+.|+-   .=|           |||= 
T Consensus        66 ~E~dkiIgL~~d~~sisLEPgGQfELSGAPl~TiHet~dEin~Hl~Q~~ev~~emg~gFlGlG~qPkwrr~DiP~MPKGR  145 (446)
T TIGR01436        66 EEDDKIIGLKKDDASISLEPGGQFELSGAPLETIHETYDEINEHLYQVKEVAEEMGLGFLGLGLQPKWRREDIPLMPKGR  145 (446)
T ss_pred             EECCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             44887888626881476468642101556134666328999889999999987616201035546665447888898752


Q ss_pred             ---CCCC---CCH-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHCC
Q ss_conf             ---1135---662-689998763136874233588655215666545777642232122207------661013442046
Q gi|254780503|r  262 ---MQNY---PGS-AMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLA------PYGNSYRRLVLD  328 (461)
Q Consensus       262 ---~~~~---~Gs-G~H~h~SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~------PtvNSYkRl~p~  328 (461)
                         +.+.   .|. |+-+-+--+.-  .-|+=++.++.+=...|--+|    .=|=.|||||      -..|.|--+..+
T Consensus       146 Y~IMr~YmPkvG~LgLDMMlRTCTv--Q~N~DfsSEADMv~KFR~slA----LQPlatALFANSPFlEGkPNGFlSyRsh  219 (446)
T TIGR01436       146 YKIMRDYMPKVGKLGLDMMLRTCTV--QANLDFSSEADMVKKFRVSLA----LQPLATALFANSPFLEGKPNGFLSYRSH  219 (446)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             5888624787786224566545244--305663405778899877655----5689999853786668787875435535


Q ss_pred             CCCC
Q ss_conf             5575
Q gi|254780503|r  329 MGCP  332 (461)
Q Consensus       329 ~~ap  332 (461)
                      .|.-
T Consensus       220 IWtd  223 (446)
T TIGR01436       220 IWTD  223 (446)
T ss_pred             CCCC
T ss_conf             4668


No 27 
>TIGR02048 gshA_cyano glutamate--cysteine ligase, putative; InterPro: IPR011792    This family consists of proteins believed to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione ..
Probab=47.20  E-value=21  Score=16.00  Aligned_cols=269  Identities=17%  Similarity=0.188  Sum_probs=131.1

Q ss_pred             EEECCCCEECCCCCCCEEEEEEECC-CCCCCC-CCCCHHHHHHHHHHHHH-CC----CCCEEECCCCCEEEEECCCCCCC
Q ss_conf             9600124538788877099997403-357521-23425777899999861-02----76402322441799821678888
Q gi|254780503|r   92 SPDLSTLSIVPWEMDPTAQIVCDVV-DYNGKE-VTYTPRNVLKRVLNFYA-QN----ELKPIIAPEIEFYLIAKNEDPDY  164 (461)
Q Consensus        92 ~PD~~Tl~~lPw~~~~~a~vl~~~~-~~dG~p-~~~~PR~iLkr~i~~l~-~~----G~~~~~g~E~EF~L~~~~~~~~~  164 (461)
                      +-|++-|+.-|-.  .......+.. ..|..- --.-||..|+.-++.+. +.    |-.+-.|-.-.||          
T Consensus        26 v~~l~GfvrePds--rnveytt~P~~~y~~~lC~~l~Pr~~lr~yl~~lG~d~tl~PGs~l~lG~~~~fy----------   93 (377)
T TIGR02048        26 VKDLDGFVREPDS--RNVEYTTPPLYSYDRLLCDLLRPRRRLRDYLKQLGEDYTLIPGSTLSLGDTDRFY----------   93 (377)
T ss_pred             HHHCCCCEECCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC----------
T ss_conf             7433653107776--5322336347899999999863489999999972655031475300037765310----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             77787788887766787777665442899999899767863110221010127864201112665211378999999999
Q gi|254780503|r  165 PLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTI  244 (461)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~i  244 (461)
                                         -..+.+.++.++++-+..    .+-.-++|-.             -++.-...++.+..+|
T Consensus        94 -------------------rsdP~nPyh~yieqty~t----~vvtas~hin-------------~G~~~~e~l~raCrl~  137 (377)
T TIGR02048        94 -------------------RSDPQNPYHTYIEQTYGT----KVVTASVHIN-------------IGIDDPEALMRACRLV  137 (377)
T ss_pred             -------------------CCCCCCHHHHHHHHHCCC----EEEEEEEEEE-------------CCCCCHHHHHHHHHHH
T ss_conf             -------------------158886246887642054----4888888886-------------0664278898663333


Q ss_pred             HHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             99986306603311232113566268999876313687423358-865-5215666545777642232122207661013
Q gi|254780503|r  245 REAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSN-PDG-SETDNFRYFIGGLQKYIPNALVMLAPYGNSY  322 (461)
Q Consensus       245 k~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~-~~~-~ls~~~~~fiaGil~h~~al~a~~~PtvNSY  322 (461)
                      |--|--+  .|--..-||.+..-.|-|  -+-|      .+|-. |.. ++-..--|||-=.-+.+.      .-|...-
T Consensus       138 r~eaPl~--lalsa~sPf~~G~~tGyh--s~rW------~~fP~tP~~vPlftsh~h~~~W~e~ql~------~Gtmqnv  201 (377)
T TIGR02048       138 RLEAPLF--LALSASSPFLDGQVTGYH--STRW------AVFPKTPTEVPLFTSHAHFIEWTEEQLA------LGTMQNV  201 (377)
T ss_pred             HCCCHHH--HHHHHCCCCCCCCCCEEE--CCCC------CCCCCCCCCCCCCCCHHHHHHHHHHHHH------HHHHHHH
T ss_conf             0111367--776521632266100011--1001------1047888757411020578888898873------1137666


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCEEEEECCCCC---CCCEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             4420465575433424334500365022388---65203530358779989--999999999999898468887433453
Q gi|254780503|r  323 RRLVLDMGCPVNNAWGYDNRTTAFRIPFSDA---KTKRIENRLPSSDTNPY--LVLAASLACGLLGILQKIEPTPPTMKS  397 (461)
Q Consensus       323 kRl~p~~~ap~~~~WG~~NR~~~iRip~~~~---~~~riE~R~~d~~aNPY--L~laail~agl~Gi~~~l~p~~~~~~~  397 (461)
                      |    +-|+             ++| |.++.   .-.|+|.|+.|--.||-  |++.|+|-|-|.-+-..-++.|-..+.
T Consensus       202 r----hlW~-------------~vr-PnGd~rP~~lnrlelriCdlvt~P~~llai~allearl~ql~~~P~ldPl~~~~  263 (377)
T TIGR02048       202 R----HLWS-------------AVR-PNGDRRPYDLNRLELRICDLVTDPISLLAITALLEARLLQLLEDPDLDPLRQSK  263 (377)
T ss_pred             H----HHHH-------------HCC-CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
T ss_conf             7----6664-------------106-676778630114555565564044899999999999999997188867211104


Q ss_pred             CCC-CH---------HCCCCCHHHHHHHHHCCHHH--HHHCCHHHHHHHHHHHHHHH
Q ss_conf             000-31---------10478989999998659898--87355899999999999999
Q gi|254780503|r  398 ANQ-EA---------INLPRGLLEAVTLLENTSHF--KDIFGSQFIDMYANLKRNEF  442 (461)
Q Consensus       398 ~~~-~~---------~~LP~sL~eAl~~l~~d~~l--~~~lg~~~v~~~~~~k~~E~  442 (461)
                      ... +.         ..--.+|+..|...+....+  ++++.+-+-+.+...|.+-.
T Consensus       264 ~~~~~l~~l~~~ne~~aa~~sl~~~l~hW~d~r~~~a~~W~~e~y~~v~~~ak~~Gf  320 (377)
T TIGR02048       264 LSPEELVALADKNEAAAAKASLDAVLTHWRDGRAIIAREWIEELYQEVWAIAKKQGF  320 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             688999999886778999887877776544356789999999999999999875485


No 28 
>KOG0257 consensus
Probab=46.85  E-value=17  Score=16.60  Aligned_cols=49  Identities=22%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECC
Q ss_conf             0999974033575212342577789999986102764023224417998216
Q gi|254780503|r  108 TAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKN  159 (461)
Q Consensus       108 ~a~vl~~~~~~dG~p~~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~  159 (461)
                      -+.++|+-.++.|+-+   +|..|.++.+-+++.|+-+.+---+|+++++.+
T Consensus       174 k~Ii~ntPhNPtGkvf---sReeLe~ia~l~~k~~~lvisDevYe~~v~d~~  222 (420)
T KOG0257         174 KAIILNTPHNPTGKVF---SREELERIAELCKKHGLLVISDEVYEWLVYDGN  222 (420)
T ss_pred             CEEEEECCCCCCCCCC---CHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCC
T ss_conf             4799948999867305---799999999999878979998257478821787


No 29 
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+.  Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=45.13  E-value=17  Score=16.47  Aligned_cols=28  Identities=14%  Similarity=0.215  Sum_probs=11.8

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0111266521137899999999999986306
Q gi|254780503|r  222 EINIRHGDPLKLADQVFLFKRTIREAAFKHD  252 (461)
Q Consensus       222 Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G  252 (461)
                      ++.+-|.  .+..+.+ .|+.-+.+++.++.
T Consensus       143 ~i~l~yg--~r~~~d~-~~~~eL~~l~~~~~  170 (247)
T cd06184         143 PVTFIHA--ARNSAVH-AFRDELEELAARLP  170 (247)
T ss_pred             CEEEEEE--CCCHHHH-HHHHHHHHHHHHCC
T ss_conf             4899995--6997993-78999999997689


No 30 
>pfam04468 PSP1 PSP1 C-terminal conserved region. This region is present in both eukaryotes and eubacteria. The yeast PSP1 protein is involved in suppressing mutations in the DNA polymerase alpha subunit in yeast.
Probab=44.68  E-value=23  Score=15.75  Aligned_cols=59  Identities=12%  Similarity=0.104  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             9999989976786311022101012786420111266521137899999999999986306603
Q gi|254780503|r  192 DEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYA  255 (461)
Q Consensus       192 ~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~a  255 (461)
                      .+.+....+.....|++.+-+..|+-.+.--+++-|+     ||.-+=||.++|++++.++.+.
T Consensus        25 ~~a~~~c~~~v~~~~L~Mkivd~e~~~D~~kl~fyy~-----a~~RVDFR~Lvk~L~~~f~~RI   83 (88)
T pfam04468        25 EEALEICREKIREHGLPMKLVDVEYQFDRSKLTFYYT-----AEGRVDFRELVKDLAREFKTRI   83 (88)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEE-----CCCCCCHHHHHHHHHHHHCCEE
T ss_conf             9999999999998299938999999469968999997-----6984238999999999849738


No 31 
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=42.99  E-value=24  Score=15.58  Aligned_cols=72  Identities=25%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCHHHHHH-HHHC-CHHHHHHCCHHHHHHHH
Q ss_conf             5877998999999999999989846888743345300031104789899999-9865-98988735589999999
Q gi|254780503|r  363 PSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQEAINLPRGLLEAVT-LLEN-TSHFKDIFGSQFIDMYA  435 (461)
Q Consensus       363 ~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~~~~~LP~sL~eAl~-~l~~-d~~l~~~lg~~~v~~~~  435 (461)
                      |..+--|||+.|+-+-|-..|.-+++-+..| .-++.++.--||-+|.+-++ .|+- .+.+.+.+|.+.+....
T Consensus       151 pAGTGKTyLava~av~al~~~~v~rIiLtRP-aVEAGEklGfLPGdl~eKvdPylRPLyDAl~d~l~~~~~~~~~  224 (348)
T COG1702         151 PAGTGKTYLAVAKAVDALGAGQVRRIILTRP-AVEAGEKLGFLPGDLREKVDPYLRPLYDALYDILGAERVEALD  224 (348)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCHHEEECCCC-CHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6456971112776652654064120100683-1303642370788234324611041789999986489773055


No 32 
>PRK13289 nitric oxide dioxygenase; Provisional
Probab=41.89  E-value=20  Score=16.14  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=16.2

Q ss_pred             CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             20111266521137899999999999986306
Q gi|254780503|r  221 FEINIRHGDPLKLADQVFLFKRTIREAAFKHD  252 (461)
Q Consensus       221 ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G  252 (461)
                      -++.|-|+.  +..+. ..|+.-+++++.+|.
T Consensus       290 r~V~liyga--R~~~~-~~F~~eL~~La~~~p  318 (399)
T PRK13289        290 RPVHFIHAA--ENGDV-HAFRDEVRALAARHP  318 (399)
T ss_pred             CCEEEEEEC--CCHHH-HHHHHHHHHHHHHCC
T ss_conf             857999956--98798-888999999997589


No 33 
>pfam11679 DUF3275 Protein of unknown function (DUF3275). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=41.15  E-value=21  Score=15.90  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=26.7

Q ss_pred             EEEEEECCCCCCCCCCCCH---HHHHHHHHHHHHCCCCCE
Q ss_conf             9999740335752123425---777899999861027640
Q gi|254780503|r  109 AQIVCDVVDYNGKEVTYTP---RNVLKRVLNFYAQNELKP  145 (461)
Q Consensus       109 a~vl~~~~~~dG~p~~~~P---R~iLkr~i~~l~~~G~~~  145 (461)
                      +.+|+. +|+=|+++.+||   |..|+.|+.++.+.||.+
T Consensus       163 a~LFG~-lWplge~VKLD~TVDRr~LR~Q~~rLg~LGY~~  201 (211)
T pfam11679       163 AELFGE-LWPAGEPVKLDPTVDRSRLRQQCARLGQLGYEL  201 (211)
T ss_pred             HHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             888751-112788301555112899999999986437111


No 34 
>pfam09909 DUF2138 Uncharacterized protein conserved in bacteria (DUF2138). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.50  E-value=20  Score=16.13  Aligned_cols=30  Identities=27%  Similarity=0.240  Sum_probs=16.7

Q ss_pred             EEEEEEECCCCCCCC---CCCCHHHHHHHHHHHH
Q ss_conf             099997403357521---2342577789999986
Q gi|254780503|r  108 TAQIVCDVVDYNGKE---VTYTPRNVLKRVLNFY  138 (461)
Q Consensus       108 ~a~vl~~~~~~dG~p---~~~~PR~iLkr~i~~l  138 (461)
                      .|.|..+ ...||..   +..--|+-|.|+++-+
T Consensus       117 PA~VaLW-R~~dGrL~~fv~~m~R~GLAklLE~l  149 (552)
T pfam09909       117 PAQVALW-RGADGRLRHFVVSMQRNGLAKLLEPL  149 (552)
T ss_pred             CCCEEEE-ECCCCCHHHEEEEEECCCHHHHHHHH
T ss_conf             3012556-57999812358888423089998766


No 35 
>pfam03851 UvdE UV-endonuclease UvdE.
Probab=37.57  E-value=29  Score=15.04  Aligned_cols=71  Identities=14%  Similarity=0.041  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCH
Q ss_conf             999899767863110221010127864201112665211378999999999999863066033112321135662
Q gi|254780503|r  194 IIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGS  268 (461)
Q Consensus       194 ~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~Gs  268 (461)
                      -+..|.+.+.+-||.+--+.++.-|=    .-.|.-...-.+.+.-.=.-|.+.|+++|.+.||.|-+|.-.+..
T Consensus        45 ~l~~il~~n~~~~I~~yRiSS~lfP~----~shp~~~~~~~~~~~~~l~~iG~~a~~~~~Rls~HPgqf~vL~S~  115 (275)
T pfam03851        45 NLIRLLHYNIAHGIRLYRLSSSLFPL----ASHPDVGWKYETFAAPELREAGELAKEHGHRLTFHPGQFTVLNSP  115 (275)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCC
T ss_conf             99999998887597669814020466----778423620489999999999999998295587489972216999


No 36 
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase; InterPro: IPR006334   These sequences represent glutamate--cysteine ligase, also known as gamma-glutamylcysteine synthetase, an enzyme in the biosynthesis of glutathione (GSH). GSH is one of several low molecular weight cysteine derivatives that can serve to protect against oxidative damage and participate in biosynthetic or detoxification reactions.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=37.28  E-value=27  Score=15.27  Aligned_cols=16  Identities=25%  Similarity=0.407  Sum_probs=9.5

Q ss_pred             CEEEEECCCCCCCHHHHH
Q ss_conf             203530358779989999
Q gi|254780503|r  356 KRIENRLPSSDTNPYLVL  373 (461)
Q Consensus       356 ~riE~R~~d~~aNPYL~l  373 (461)
                      -.||+|+-|  .||.+=+
T Consensus       324 eYvEvRsLD--iNPFsPi  339 (518)
T TIGR01434       324 EYVEVRSLD--INPFSPI  339 (518)
T ss_pred             EEEEEEEEC--CCCCCCC
T ss_conf             089985313--6889876


No 37 
>pfam02233 PNTB NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyses the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.
Probab=36.50  E-value=30  Score=14.93  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=35.9

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC-CCHHHHHHHHHHH
Q ss_conf             01112665211378999999999999863066033112321135-6626899987631
Q gi|254780503|r  222 EINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNY-PGSAMHIHQSVLD  278 (461)
Q Consensus       222 Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~-~GsG~H~h~SL~d  278 (461)
                      .+-+-|.-++..|-.....|++.+.. +++|..+.|-=.|..|. ||   |+|+=|-.
T Consensus       310 ~ViIVPGYGmAvAqAQ~~v~el~~~L-~~~g~~V~faIHPVAGRMPG---HMNVLLAE  363 (464)
T pfam02233       310 SVIIVPGYGMAVAQAQHPVADLAKLL-EERGVNVRFAIHPVAGRMPG---HMNVLLAE  363 (464)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCC---CHHHHHHH
T ss_conf             39997780899998789999999999-97898699985766888873---05552231


No 38 
>PHA01807 hypothetical protein
Probab=35.61  E-value=22  Score=15.87  Aligned_cols=42  Identities=19%  Similarity=0.419  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCC
Q ss_conf             428999998997678631102210101278642011126652
Q gi|254780503|r  189 NEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDP  230 (461)
Q Consensus       189 ~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~  230 (461)
                      .....|++.+.+.....+|++-.+.|-.|+|-|+|++.-..|
T Consensus        94 Gv~~~f~R~l~~lA~~~n~p~va~tHR~g~grY~i~Yrr~kp  135 (145)
T PHA01807         94 GVAREFIRELHRLAGWGNIPLVAWTHREGDGRYTIHYRRAKP  135 (145)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCC
T ss_conf             424999999999750368725898740388457888765177


No 39 
>pfam03484 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=33.99  E-value=33  Score=14.67  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECC--CCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             998997678631102210101278642011126--65211378999999999999863066
Q gi|254780503|r  195 IDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRH--GDPLKLADQVFLFKRTIREAAFKHDI  253 (461)
Q Consensus       195 l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~--~~~l~aaD~~~~~k~~ik~vA~~~G~  253 (461)
                      .+++.+.|..+|+.++.     ..+.+.+....  .|....+|       ++-+||+-+|+
T Consensus        21 ~~~i~~~L~~lg~~~~~-----~~~~~~v~vPs~R~Di~~~~D-------liEEi~R~~Gy   69 (69)
T pfam03484        21 PEEIKKILKRLGFKVEE-----DEDTLKVTVPSYRPDILHEVD-------LIEEVARLYGY   69 (69)
T ss_pred             HHHHHHHHHHCCCEEEE-----CCCEEEEECCCCCCCCCCCCH-------HHHHHHHHHCC
T ss_conf             99999999986998994-----798699989998576686256-------99999998089


No 40 
>pfam00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain.
Probab=31.57  E-value=36  Score=14.41  Aligned_cols=97  Identities=18%  Similarity=0.248  Sum_probs=60.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             57521234257778999998610276402322441799821678888777877888877667877776654428999998
Q gi|254780503|r  118 YNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDD  197 (461)
Q Consensus       118 ~dG~p~~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~  197 (461)
                      .||+++...-+.-++..++.+++.|..|..+.    .+..  +++                           ...-|.+.
T Consensus         3 LdGk~vA~~i~~~l~~~i~~l~~~g~~P~Lai----i~vg--~~~---------------------------~s~~Yv~~   49 (117)
T pfam00763         3 LDGKALAKKIREELKEEVAKLKEKGVTPKLAV----ILVG--DDP---------------------------ASQVYVRS   49 (117)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE----EEEC--CCH---------------------------HHHHHHHH
T ss_conf             32699999999999999999985799971899----9848--975---------------------------67999999


Q ss_pred             HHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf             9976786311022101012786420111266521137899999999999986306603311232113
Q gi|254780503|r  198 IWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQN  264 (461)
Q Consensus       198 i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~  264 (461)
                      ..+.|+..||..+.++=.....|                 --+...++++......+.-+.-.|.+.
T Consensus        50 k~k~~~~~Gi~~~~~~l~~~~s~-----------------~~l~~~I~~lN~D~~V~GIlvqlPLP~   99 (117)
T pfam00763        50 KRKAAEELGIESELIRLPEDITE-----------------EELLALIEKLNADPSVHGILVQLPLPK   99 (117)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCH-----------------HHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             99999972871699877763349-----------------999999999967887887988388988


No 41 
>PRK05996 motB flagellar motor protein MotB; Validated
Probab=29.72  E-value=39  Score=14.21  Aligned_cols=46  Identities=17%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHCC
Q ss_conf             2689998763136874233588655215666---545777642232122207
Q gi|254780503|r  268 SAMHIHQSVLDIKSNQNIFSNPDGSETDNFR---YFIGGLQKYIPNALVMLA  316 (461)
Q Consensus       268 sG~H~h~SL~d~~~g~n~f~~~~~~ls~~~~---~fiaGil~h~~al~a~~~  316 (461)
                      -|  +-++|.| +.++..|..+...+....+   .-||.+|...|.-..|.-
T Consensus       311 eG--LrIqI~D-~~~~~MF~~GSA~p~p~~~~lL~~Ia~vL~~~pn~I~I~G  359 (431)
T PRK05996        311 GG--LLISLTD-QVDYGMFAIGSAVPRAELVLAMEKIGQLLAEQPGAVIIRG  359 (431)
T ss_pred             CE--EEEEEEE-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             92--7999985-8999884779775688999999999999963898179987


No 42 
>TIGR01663 PNK-3'Pase polynucleotide kinase 3'-phosphatase; InterPro: IPR006550   These sequences represent the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3'-phosphates is essential for the further processing of the break by DNA polymerases , . The central phosphatase domain is a member of the IIIA subfamily (IPR006549 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by IPR006551 from INTERPRO. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. .
Probab=29.03  E-value=40  Score=14.13  Aligned_cols=48  Identities=23%  Similarity=0.317  Sum_probs=25.8

Q ss_pred             HHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHCC-----CCCCCCCEEECCCCC
Q ss_conf             999717983999999788983312676198873015-----677361000002427
Q gi|254780503|r   22 KWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNI-----PLTVPSAIYRHTISG   72 (461)
Q Consensus        22 ~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~~-----~~g~~~~~~~~~~~g   72 (461)
                      +-|.+.|-|.  +.||..-|+.|||+ ++++|.-++     ..|+|..++...-+|
T Consensus       207 ~~L~~~GyK~--~~FTNQ~~I~RGK~-~~~~FK~K~~~~V~KLGVP~QVl~A~~~G  259 (526)
T TIGR01663       207 KELEKDGYKL--VLFTNQGSIARGKL-NLDDFKVKVKAVVEKLGVPIQVLVAIGDG  259 (526)
T ss_pred             HHHHHCCCEE--EEEECCCCEECCCC-CHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             8874188279--99845773001555-65676668888898618976887650687


No 43 
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=28.45  E-value=16  Score=16.65  Aligned_cols=27  Identities=30%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             HHHHHHHCCHHHHHCCCCCCCCCEEECC
Q ss_conf             7678631102210101278642011126
Q gi|254780503|r  200 KFSEKQGLEIDTLIHEEGPAQFEINIRH  227 (461)
Q Consensus       200 ~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~  227 (461)
                      +...++|-+||++.-+ +|||||||+.-
T Consensus        52 de~~a~ge~ietIrI~-~pG~YeiNl~~   78 (112)
T COG3364          52 DEDGAQGEPIETIRIL-RPGVYEINLES   78 (112)
T ss_pred             CHHHCCCCCCEEEEEE-CCCEEEEEHHH
T ss_conf             1122036750489994-49648974456


No 44 
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178   Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=27.84  E-value=29  Score=15.07  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=19.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCC-CEE
Q ss_conf             234257778999998610276-402
Q gi|254780503|r  123 VTYTPRNVLKRVLNFYAQNEL-KPI  146 (461)
Q Consensus       123 ~~~~PR~iLkr~i~~l~~~G~-~~~  146 (461)
                      .-+=+|+.||-|++||+..|+ +.+
T Consensus        39 lIGVTRTTLREVLQRLARDGWLTIQ   63 (275)
T TIGR02812        39 LIGVTRTTLREVLQRLARDGWLTIQ   63 (275)
T ss_pred             HCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             2376630378999887641134365


No 45 
>COG1602 Uncharacterized conserved protein [Function unknown]
Probab=27.77  E-value=42  Score=13.99  Aligned_cols=135  Identities=10%  Similarity=0.035  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHCCHHHHHCCCCCCCC----CEEECCC-CCHHHHHHHHHHHHHHHHHHH---------------HHCCCE
Q ss_conf             98997678631102210101278642----0111266-521137899999999999986---------------306603
Q gi|254780503|r  196 DDIWKFSEKQGLEIDTLIHEEGPAQF----EINIRHG-DPLKLADQVFLFKRTIREAAF---------------KHDIYA  255 (461)
Q Consensus       196 ~~i~~~l~~~Gi~ve~~~~E~gpGQ~----Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~---------------~~G~~a  255 (461)
                      .+.+-.|..-|++++++..-..-|-.    +=-+-|+ -.++|+|..+ -+++.++|-.               .+-+.+
T Consensus       183 ~eAv~~LY~~G~d~~~I~r~LS~G~lg~gk~RrlVPTRWSITAVD~~v-s~~L~~~i~~~p~Id~~~v~~~e~~gN~f~v  261 (402)
T COG1602         183 EEAVVELYRRGVDVYYIQRALSVGLLGLGKRRRLVPTRWSITAVDDTV-SDYLAREIRDYPEIDKYEVYSGEYLGNHFLV  261 (402)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEHHHHH-HHHHHHHHHCCCCCCCEEEEEEEECCCEEEE
T ss_conf             999999998499899999986231320675664066630110068789-9999999843887672899977761868999


Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-----CCHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf             311232113566268999876313687423358865-----52156665457---7764223212220766101344204
Q gi|254780503|r  256 TFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG-----SETDNFRYFIG---GLQKYIPNALVMLAPYGNSYRRLVL  327 (461)
Q Consensus       256 tFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~-----~ls~~~~~fia---Gil~h~~al~a~~~PtvNSYkRl~p  327 (461)
                      -.+|.|+.-..+-..|-| |+|+. +.--+..|.++     +-++++-.+-|   ++|+|+..+-==  .++-=.|...|
T Consensus       262 IL~P~~~~~E~~E~w~pg-s~W~~-~~~~i~~d~E~~~Gr~~Y~~~gG~YyAARLaVlE~L~~~~Rq--a~aiv~REi~p  337 (402)
T COG1602         262 ILLPRPWSFELVEAWEPG-SLWSP-GDLVISVDSEGYRGRKGYPDTGGAYYAARLAVLEHLSRIGRQ--ASAIVLREIYP  337 (402)
T ss_pred             EECCCCCCHHHHHHHCCC-CCCCC-CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCEEEEEEECC
T ss_conf             990687631073464468-75678-885589842455576577666651267889999999984165--65699998157


Q ss_pred             CCCCCCCC
Q ss_conf             65575433
Q gi|254780503|r  328 DMGCPVNN  335 (461)
Q Consensus       328 ~~~ap~~~  335 (461)
                      ++|||+-+
T Consensus       338 ~Y~aPvGv  345 (402)
T COG1602         338 GYYAPVGV  345 (402)
T ss_pred             CCCCCEEE
T ss_conf             75233033


No 46 
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=27.75  E-value=42  Score=13.99  Aligned_cols=48  Identities=23%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHCCHHHHHCCCCCCCCCEEECC--CCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98997678631102210101278642011126--65211378999999999999863066
Q gi|254780503|r  196 DDIWKFSEKQGLEIDTLIHEEGPAQFEINIRH--GDPLKLADQVFLFKRTIREAAFKHDI  253 (461)
Q Consensus       196 ~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~--~~~l~aaD~~~~~k~~ik~vA~~~G~  253 (461)
                      +++.+.|..+|+.++.   ....+++++...+  .|....+|       ++-+||+-+||
T Consensus        22 ~~i~~~L~~lg~~~~~---~~~~~~~~v~~Ps~R~Di~~~~D-------liEEi~R~~Gy   71 (71)
T smart00874       22 EEIEEILKRLGFEVEV---SGDDDTLEVTVPSYRFDILIEAD-------LIEEVARIYGY   71 (71)
T ss_pred             HHHHHHHHHCCCEEEE---CCCCCEEEEECCCCCCCCCCCCH-------HHHHHHHHHCC
T ss_conf             9999999986998996---57897599978997065597346-------99988898079


No 47 
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic; InterPro: IPR010109   Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA).    Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH .   This entry includes both mitochondrial and peroxisomal forms of citrate synthase. Peroxisomal forms of the enzyme, recognized by the C-terminal targeting motif SKL, act in the glyoxylate cycle. Eukaryotic homologs include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans (Emericella nidulans).; GO: 0004108 citrate (Si)-synthase activity, 0044262 cellular carbohydrate metabolic process.
Probab=27.43  E-value=15  Score=16.83  Aligned_cols=31  Identities=29%  Similarity=0.236  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEC-CCCCEEEEE
Q ss_conf             8999999971798399999978-898331267
Q gi|254780503|r   17 WEQAAKWLKDNRIEDVECITPD-LAGIPRGKM   47 (461)
Q Consensus        17 ~~~v~~~l~~~~I~~V~v~~~D-l~G~~RgK~   47 (461)
                      -+.|+++=+|||=+.|.=+-+| +-|-+||-.
T Consensus        16 ~ekvKklr~EHG~~v~gn~t~D~~yGGmRg~k   47 (430)
T TIGR01793        16 QEKVKKLRKEHGKKVVGNVTVDMVYGGMRGMK   47 (430)
T ss_pred             HHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCC
T ss_conf             66688787522560330121101104432241


No 48 
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534   These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Probab=26.97  E-value=43  Score=13.90  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEE-ECCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             34257778999998610276402-3224--41799821678888777877888877667877776654428999998997
Q gi|254780503|r  124 TYTPRNVLKRVLNFYAQNELKPI-IAPE--IEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWK  200 (461)
Q Consensus       124 ~~~PR~iLkr~i~~l~~~G~~~~-~g~E--~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~  200 (461)
                      .-.-|+.....++.|+++||+.+ |+.+  +|=+-    ++......--.-.        +.|+=.|-|     =.+-++
T Consensus       434 ~~~v~~~Ve~~v~~lA~RG~RaLGVA~~evP~g~~----~~~~g~W~~~Gll--------plfDPPR~D-----T~eTI~  496 (835)
T TIGR01647       434 EEEVREKVEEKVEELASRGYRALGVARTEVPSGEK----ADEKGRWHFLGLL--------PLFDPPRHD-----TKETIE  496 (835)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC----CCCCCCEEEEEEC--------CCCCCCCCC-----HHHHHH
T ss_conf             88999888999999970787142143201778655----5788735888720--------027836987-----389999


Q ss_pred             HHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCC
Q ss_conf             6786311022101012786420111266521137899999999999986306-603311232
Q gi|254780503|r  201 FSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHD-IYATFMAKP  261 (461)
Q Consensus       201 ~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G-~~atFmpKP  261 (461)
                      .+.++||.|..+                    ..|++..+|+++|++-.--+ +.++=.+|-
T Consensus       497 ~A~~~GV~VKMv--------------------TGDhlaIAKEtaR~LGlGtni~~~~~L~~~  538 (835)
T TIGR01647       497 RARELGVEVKMV--------------------TGDHLAIAKETARRLGLGTNIYNADVLLKK  538 (835)
T ss_pred             HHHHCCCEEEEE--------------------EHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             998769769897--------------------002678776653215798753474100467


No 49 
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=26.11  E-value=45  Score=13.80  Aligned_cols=40  Identities=13%  Similarity=0.124  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC-------CCEEECCCC
Q ss_conf             2899999899767863110221010127864-------201112665
Q gi|254780503|r  190 EFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQ-------FEINIRHGD  229 (461)
Q Consensus       190 ~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ-------~Ei~~~~~~  229 (461)
                      +.+++++.+..+++.+|+...+...|.+++-       .|+.|.|+.
T Consensus       152 r~hP~m~~vl~AiE~lGfrL~~vdCEqa~yF~~a~PFVQEfEFvPTt  198 (270)
T COG4326         152 RPHPMMDGVLSAIEALGFRLRQVDCEQAKYFGGALPFVQEFEFVPTT  198 (270)
T ss_pred             ECCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             36667988999998516373101313154335556423678872158


No 50 
>PHA02105 hypothetical protein
Probab=25.95  E-value=41  Score=14.04  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=27.2

Q ss_pred             CCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEECCCCCE
Q ss_conf             877777789555899899999997179839999997889833
Q gi|254780503|r    2 NKNDQSPMNVRGVKNWEQAAKWLKDNRIEDVECITPDLAGIP   43 (461)
Q Consensus         2 ~~~~~~~m~~~~~~~~~~v~~~l~~~~I~~V~v~~~Dl~G~~   43 (461)
                      |++.+.|.+.+   .+++++....-..|+||.+.|-..+.++
T Consensus        17 ndq~eyp~~~e---~~~ql~svfsipqi~yvyls~~e~~si~   55 (68)
T PHA02105         17 NDQNEYPVELE---LFDQLKTVFSIPQIKYVYLSYEEFNSIM   55 (68)
T ss_pred             CCCCCCCCCHH---HHHHHHHHCCCCCEEEEEEEHHHHCCCC
T ss_conf             76544652078---8998887613553478997688851513


No 51 
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR; InterPro: IPR014160   The members of this entry from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterised nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologues, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologues not in this entry have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel..
Probab=25.90  E-value=13  Score=17.30  Aligned_cols=30  Identities=13%  Similarity=0.325  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHH
Q ss_conf             9999999863066033112321135662689998
Q gi|254780503|r  241 KRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQ  274 (461)
Q Consensus       241 k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~  274 (461)
                      -.-.|++++|  ++-||..  --+.+-+.||||+
T Consensus        61 dHs~RdL~~r--L~~t~H~--HHdLs~atlHVHL   90 (130)
T TIGR02793        61 DHSKRDLPRR--LTQTLHH--HHDLSRATLHVHL   90 (130)
T ss_pred             CCCCCHHHHH--HHHCCCC--CCHHHHHHHHEEC
T ss_conf             1753113455--5101432--0011142120123


No 52 
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=24.99  E-value=47  Score=13.67  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEECCCCEECCCCCCCEEEEEEECC---CCCC--------CC-----------------CCCCHHHHHHHHH
Q ss_conf             888778999600124538788877099997403---3575--------21-----------------2342577789999
Q gi|254780503|r   84 ERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVV---DYNG--------KE-----------------VTYTPRNVLKRVL  135 (461)
Q Consensus        84 ~~~~D~~l~PD~~Tl~~lPw~~~~~a~vl~~~~---~~dG--------~p-----------------~~~~PR~iLkr~i  135 (461)
                      ...|..+.+|||-+.+.-+  .+.++.++++..   +.|.        .+                 ....-+....+.+
T Consensus        94 ~~~g~~~~~~DP~a~~~~~--~p~~aS~v~~~~~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~~~~~~~e~a~~ll  171 (628)
T COG0296          94 DPSGQLRLKADPYARRQEV--GPHTASQVVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPDRFLGYFELAIELL  171 (628)
T ss_pred             CCCCCEEECCCCHHHCCCC--CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             8988644226831420588--99985066477773146544442346877787269999765035887767899999875


Q ss_pred             HHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             98610276402322441799821678888777877888877667877776-6544289999989976786311022
Q gi|254780503|r  136 NFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSI-MGINEFDEIIDDIWKFSEKQGLEID  210 (461)
Q Consensus       136 ~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~~l~~i~~~l~~~Gi~ve  210 (461)
                      .+++++|++.     +|+.=+.+     .+..   ..-|+.  ...+|.. ++...-++ ++.++++|.++||.|-
T Consensus       172 pYl~elG~T~-----IELMPv~e-----~p~~---~sWGYq--~~g~yAp~sryGtPed-fk~fVD~aH~~GIgVi  231 (628)
T COG0296         172 PYLKELGITH-----IELMPVAE-----HPGD---RSWGYQ--GTGYYAPTSRYGTPED-FKALVDAAHQAGIGVI  231 (628)
T ss_pred             HHHHHHCCCE-----EEECCCCC-----CCCC---CCCCCC--CCEECCCCCCCCCHHH-HHHHHHHHHHCCCEEE
T ss_conf             8999709877-----99714435-----7988---887777--4300156556799899-9999999987699899


No 53 
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=24.87  E-value=36  Score=14.45  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC-CCCCCHH
Q ss_conf             899999899767863110221010127864201112665211378999999999999863066033112321-1356626
Q gi|254780503|r  191 FDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPM-QNYPGSA  269 (461)
Q Consensus       191 ~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~-~~~~GsG  269 (461)
                      -.+|+..|...|...|+ |++.-.-  -|=|.++-.|.+        +....+++.+=-...+..||...+. .. ..+.
T Consensus        37 s~~~l~kIl~~L~~~Gl-v~S~RG~--~GGy~Lar~p~~--------Isl~dIi~a~eg~~~~~~C~~~~~~~C~-~~~~  104 (153)
T PRK11920         37 SELFLFKILQPLVEAGL-VETVRGR--NGGVRLGKPAAD--------ISLFDVVRVTEDNFSMAECFENDASECP-LVDS  104 (153)
T ss_pred             CHHHHHHHHHHHHHCCC-EEECCCC--CCCEEECCCHHH--------CCHHHHHHHHCCCCCEEECCCCCCCCCC-CCCC
T ss_conf             99999999999998898-7845889--886354489898--------9999999997489881236889999999-9998


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899987631368742335886552156665457776422321222
Q gi|254780503|r  270 MHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVM  314 (461)
Q Consensus       270 ~H~h~SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~  314 (461)
                      |.+| ++|. + -+|.|.+      .....-|+-|++..|.+-.+
T Consensus       105 C~~~-~~w~-~-~~~~~~~------~L~~~TLaDLi~~~~~~r~l  140 (153)
T PRK11920        105 CGLN-AALR-K-ALNAFFA------VLSKYSIADLVKARPNVRFL  140 (153)
T ss_pred             CCCH-HHHH-H-HHHHHHH------HHHCCCHHHHHCCCHHHHHH
T ss_conf             7567-9999-9-9999999------99159199997488879987


No 54 
>TIGR02630 xylose_isom_A xylose isomerase; InterPro: IPR013452    Xylose isomerase (5.3.1.5 from EC) is an enzyme which interconverts D-xylose and D-xylulose.; GO: 0009045 xylose isomerase activity.
Probab=23.84  E-value=49  Score=13.52  Aligned_cols=41  Identities=15%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             CCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf             77789555899899999997179839999997889833126761
Q gi|254780503|r    6 QSPMNVRGVKNWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMP   49 (461)
Q Consensus         6 ~~~m~~~~~~~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp   49 (461)
                      +.||+.-. ..++.+.+|.++=+|+|  +||.|.+=.+=|+++.
T Consensus        71 ~~~~~~A~-~kvDA~FEf~~KLgv~Y--yCFHD~D~aPEG~~L~  111 (437)
T TIGR02630        71 TDPMDKAK-AKVDAAFEFFEKLGVPY--YCFHDVDIAPEGASLK  111 (437)
T ss_pred             CCHHHHHH-HHHHHHHHHHHHCCCCE--EEECCCCCCCCCCCHH
T ss_conf             44899998-87899999998718980--5544610257887789


No 55 
>PRK10853 hypothetical protein; Provisional
Probab=23.74  E-value=49  Score=13.54  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             HHCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHH
Q ss_conf             5589989999999717983999999788983312676198873
Q gi|254780503|r   12 RGVKNWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFI   54 (461)
Q Consensus        12 ~~~~~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~   54 (461)
                      .+..+...+.+||++++|+|   +|+|+    |-..++.+.+.
T Consensus         8 knCdTckKA~kwL~~~~i~y---~f~D~----k~~~~~~~~l~   43 (118)
T PRK10853          8 KNCDTIKKARRWLEENGIDY---RFHDY----RVDGLDSELLN   43 (118)
T ss_pred             CCCHHHHHHHHHHHHCCCCC---EEEEC----CCCCCCHHHHH
T ss_conf             99889999999999879981---89631----14698999999


No 56 
>pfam09845 DUF2072 Zn-ribbon containing protein (DUF2072). This archaeal protein has no known function.
Probab=23.72  E-value=25  Score=15.42  Aligned_cols=12  Identities=33%  Similarity=0.866  Sum_probs=9.6

Q ss_pred             CCCCCCCEEECC
Q ss_conf             278642011126
Q gi|254780503|r  216 EGPAQFEINIRH  227 (461)
Q Consensus       216 ~gpGQ~Ei~~~~  227 (461)
                      .+||+||+|+.-
T Consensus        82 ~~pG~YElnL~~   93 (121)
T pfam09845        82 LGPGSYELNLER   93 (121)
T ss_pred             CCCCEEEECHHH
T ss_conf             279726746899


No 57 
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=23.52  E-value=50  Score=13.49  Aligned_cols=147  Identities=12%  Similarity=0.044  Sum_probs=79.7

Q ss_pred             EEEEEECCCCCCCCCCCCHHHHHHH--HHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999740335752123425777899--99986102764023224417998216788887778778888776678777766
Q gi|254780503|r  109 AQIVCDVVDYNGKEVTYTPRNVLKR--VLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIM  186 (461)
Q Consensus       109 a~vl~~~~~~dG~p~~~~PR~iLkr--~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~  186 (461)
                      -.|+.+=+.+.|.|+-+.-|.+++-  +.+.|+++|      .+.+|..+-.+-|+-..+-.........-.+.+...+.
T Consensus        20 ~~v~~tG~~PSG~~HIGn~rEv~~~~~V~ral~~~g------~~~~~i~~~DD~D~lRKVp~~lpe~~~~ylg~PL~~IP   93 (354)
T cd00674          20 KYVVASGISPSGLIHIGNFREVVTADAVRRALRDLG------FEVRLIYSWDDYDPLRKVPDNVPESLEQYIGMPLSSVP   93 (354)
T ss_pred             CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------CCEEEEEEEECCCHHCCCCCCCCHHHHHHCCCCCEECC
T ss_conf             589947879998863205501788999999999759------96799998405551003755787999986299630068


Q ss_pred             -----CCCHHHHHHHHHHHHHHHHHCCHHHH--HCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf             -----54428999998997678631102210--10127864201112665211378999999999999863066033112
Q gi|254780503|r  187 -----GINEFDEIIDDIWKFSEKQGLEIDTL--IHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMA  259 (461)
Q Consensus       187 -----~~~~~~~~l~~i~~~l~~~Gi~ve~~--~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp  259 (461)
                           ..+-.+.+...+.+.|+..||++|.+  +.-|-.|.|.-.     ...+.++.-..+.++..+-.+ -+..++.|
T Consensus        94 dP~G~~~SyaeHf~~~f~~~L~~~gi~~e~~s~te~Y~sG~f~~~-----i~~~l~~~~~I~~Il~~~~g~-e~~~~y~P  167 (354)
T cd00674          94 DPFGCHESYAEHFNAPFEESLDRFGIEVEFISASEMYKSGLYDEQ-----IKRALEKRDEIMEILNEYRGR-ELQETWYP  167 (354)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHCCC-CCCCCEEE
T ss_conf             977775459999999999999984982899885660225762799-----999998289999999985475-55786477


Q ss_pred             -CCCCCCCC
Q ss_conf             -32113566
Q gi|254780503|r  260 -KPMQNYPG  267 (461)
Q Consensus       260 -KP~~~~~G  267 (461)
                       .|+....|
T Consensus       168 ~~piC~~cG  176 (354)
T cd00674         168 YMPYCEKCG  176 (354)
T ss_pred             EEEECCCCC
T ss_conf             764058888


No 58 
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=22.50  E-value=52  Score=13.36  Aligned_cols=83  Identities=12%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCC------HHHHHCCCCCCCCCEEEC--CCC---CHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             65442899999899767863110------221010127864201112--665---2113789999999999998630660
Q gi|254780503|r  186 MGINEFDEIIDDIWKFSEKQGLE------IDTLIHEEGPAQFEINIR--HGD---PLKLADQVFLFKRTIREAAFKHDIY  254 (461)
Q Consensus       186 ~~~~~~~~~l~~i~~~l~~~Gi~------ve~~~~E~gpGQ~Ei~~~--~~~---~l~aaD~~~~~k~~ik~vA~~~G~~  254 (461)
                      ...++.+.++..++..|..-|++      ||.+.-+..|||--..--  +.+   .-...|++++.-..+-.-..-+|-.
T Consensus       221 tkyNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsiTeSsT~Gd~  300 (587)
T COG4716         221 TKYNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSITESSTYGDM  300 (587)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEECCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCEEEEECCEECCCCCCCCC
T ss_conf             44304788899999999873975472567765431147636688999873575525437876599855600233336888


Q ss_pred             EEECCCCCCCCCCHH
Q ss_conf             331123211356626
Q gi|254780503|r  255 ATFMAKPMQNYPGSA  269 (461)
Q Consensus       255 atFmpKP~~~~~GsG  269 (461)
                      -|=-||| ....||+
T Consensus       301 ~tpAp~t-~elggSw  314 (587)
T COG4716         301 NTPAPKT-EELGGSW  314 (587)
T ss_pred             CCCCCCH-HHCCCCH
T ss_conf             9989982-4329717


No 59 
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=22.40  E-value=52  Score=13.34  Aligned_cols=16  Identities=44%  Similarity=0.503  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHCCCE
Q ss_conf             9999999986306603
Q gi|254780503|r  240 FKRTIREAAFKHDIYA  255 (461)
Q Consensus       240 ~k~~ik~vA~~~G~~a  255 (461)
                      +..+|++||.|||...
T Consensus         5 i~e~I~~IA~KHGIal   20 (144)
T PRK13895          5 IEELIREIAAKHGIAV   20 (144)
T ss_pred             HHHHHHHHHHHCCCCC
T ss_conf             9999999999809214


No 60 
>PTZ00326 phenylalanyl-tRNA synthetase; Provisional
Probab=22.24  E-value=53  Score=13.32  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=23.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH----CCCCC-EEEC--CCCCEEEEEC
Q ss_conf             5752123425777899999861----02764-0232--2441799821
Q gi|254780503|r  118 YNGKEVTYTPRNVLKRVLNFYA----QNELK-PIIA--PEIEFYLIAK  158 (461)
Q Consensus       118 ~dG~p~~~~PR~iLkr~i~~l~----~~G~~-~~~g--~E~EF~L~~~  158 (461)
                      ..|.+...--++-|.+++++.+    ++||+ +..+  +|.+|+-|+.
T Consensus       231 a~g~~~~~g~~hp~~~~~~~~r~if~~mGF~E~~~~~~ves~fwNfDa  278 (505)
T PTZ00326        231 ASGKKVSMGNLHPLLKVRQEFREIFMEMGFEEMPTNRWVESSFWNFDA  278 (505)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCHH
T ss_conf             988888877668899999999999997797676689713313213111


No 61 
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=22.15  E-value=53  Score=13.31  Aligned_cols=33  Identities=18%  Similarity=0.404  Sum_probs=18.4

Q ss_pred             HHHHHHH---HHHCCCEEECCCCCCCC-CCHHHHHHHHHH
Q ss_conf             9999998---63066033112321135-662689998763
Q gi|254780503|r  242 RTIREAA---FKHDIYATFMAKPMQNY-PGSAMHIHQSVL  277 (461)
Q Consensus       242 ~~ik~vA---~~~G~~atFmpKP~~~~-~GsG~H~h~SL~  277 (461)
                      +.+|+++   ++.|..+.|-=.|..+. ||   |+|+=|-
T Consensus       326 h~v~E~~~~L~~~Gv~VrfaIHPVAGRmPG---HMNVLLA  362 (463)
T COG1282         326 HPVAEITEKLRARGVNVRFAIHPVAGRMPG---HMNVLLA  362 (463)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CHHHHHH
T ss_conf             489999999986697157862213567885---1666212


No 62 
>PTZ00260 glycosyl transferase group 2; Provisional
Probab=22.11  E-value=33  Score=14.66  Aligned_cols=25  Identities=16%  Similarity=0.341  Sum_probs=11.1

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             6268999876313687423358865
Q gi|254780503|r  267 GSAMHIHQSVLDIKSNQNIFSNPDG  291 (461)
Q Consensus       267 GsG~H~h~SL~d~~~g~n~f~~~~~  291 (461)
                      |-|.-+-.-+..++|.--+|.|.++
T Consensus       156 GKG~AVr~Gml~ArG~~ILfaDADg  180 (336)
T PTZ00260        156 GKGGAVKLGMLASAGKYQLMMDADG  180 (336)
T ss_pred             CCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             8469999999981798899994788


No 63 
>COG3465 Uncharacterized conserved protein [Function unknown]
Probab=21.96  E-value=53  Score=13.29  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             23425777899999861027640232244179982167888877787788887766787777665442899999899767
Q gi|254780503|r  123 VTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFS  202 (461)
Q Consensus       123 ~~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l  202 (461)
                      .-.|-|-.|++++=-.++.|+.  +..-++|.+..                        .        .++-+.+.+..|
T Consensus        26 n~~d~R~KlQKlVYi~Kkl~~~--~~~~Y~FnlYG------------------------P--------YS~eLt~~v~~L   71 (171)
T COG3465          26 NYGDGRKKLQKLVYIAKKLGFP--FSLDYDFNLYG------------------------P--------YSEELTDDVEEL   71 (171)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCC--CHHHCCCCCCC------------------------C--------CCHHHHHHHHHH
T ss_conf             1310588889898788764577--34314753358------------------------8--------658888999998


Q ss_pred             HHHHCCHHHHHCCCCCC-CCCEEEC---CCC-CHHHHHHHHHHHHHHHHH
Q ss_conf             86311022101012786-4201112---665-211378999999999999
Q gi|254780503|r  203 EKQGLEIDTLIHEEGPA-QFEINIR---HGD-PLKLADQVFLFKRTIREA  247 (461)
Q Consensus       203 ~~~Gi~ve~~~~E~gpG-Q~Ei~~~---~~~-~l~aaD~~~~~k~~ik~v  247 (461)
                      ...|.     .+|.+.| |+|+.+.   ..+ .....|.--+..++...+
T Consensus        72 ~N~G~-----i~E~~~G~q~e~~lte~~~~~L~~~~~dkd~~~l~I~a~l  116 (171)
T COG3465          72 SNLGF-----IIEVKEGQQYEISLTEKGVSFLAITESDKDALKLEIAATL  116 (171)
T ss_pred             HCCCE-----EEEECCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             05642-----3554265046875107778899998728606889999999


No 64 
>KOG1534 consensus
Probab=21.96  E-value=51  Score=13.43  Aligned_cols=28  Identities=18%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             6545777642232122207661013442
Q gi|254780503|r  298 RYFIGGLQKYIPNALVMLAPYGNSYRRL  325 (461)
Q Consensus       298 ~~fiaGil~h~~al~a~~~PtvNSYkRl  325 (461)
                      ..||+|+|..+.|+..+--|.||--..+
T Consensus       147 ~KfiSG~lsAlsAMi~lE~P~INvlsKM  174 (273)
T KOG1534         147 TKFISGCLSALSAMISLEVPHINVLSKM  174 (273)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             8899999999999997367602244687


No 65 
>pfam08532 Glyco_hydro_42M Beta-galactosidase trimerisation domain. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation.
Probab=21.59  E-value=54  Score=13.24  Aligned_cols=54  Identities=6%  Similarity=0.174  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             899999899767863110221010127864201112665211378999999999
Q gi|254780503|r  191 FDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTI  244 (461)
Q Consensus       191 ~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~i  244 (461)
                      ..+.+.+.+++|..+||+|.-++.+.--.+|.+-+.|.-.+-.-+-.-..+..+
T Consensus        28 Y~~~v~~~Y~aL~~~gv~vDiv~~~~dls~YklvvvP~l~~~~~~~~~~L~~yv   81 (207)
T pfam08532        28 YLDLVRDWYRALRRLGIPVDVVPPDADLSGYKLVVAPMLYMVSEELAKKLEAYV   81 (207)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEEECHHHHHHHHHHH
T ss_conf             899999999999986996777047688121959998557880999999999999


No 66 
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; InterPro: IPR003526   This entry represents MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis.   A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The ygbB protein is a putative enzyme of this type .; GO: 0008685 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=21.33  E-value=55  Score=13.20  Aligned_cols=58  Identities=12%  Similarity=0.056  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEECCCCEECCCCCCCEEEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf             8887789996001245387888770999974033575212-34257778999998610276402
Q gi|254780503|r   84 ERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEV-TYTPRNVLKRVLNFYAQNELKPI  146 (461)
Q Consensus        84 ~~~~D~~l~PD~~Tl~~lPw~~~~~a~vl~~~~~~dG~p~-~~~PR~iLkr~i~~l~~~G~~~~  146 (461)
                      --|+|..|.---+.+  +--..   .-=++..+..+-..| ..|.|.+||++++..+++||++-
T Consensus        37 HSDGDvllHAl~DAl--LGA~g---lGDIG~~FPdtd~~wKgaDS~~lL~~~~~~~~~~gy~~~   95 (159)
T TIGR00151        37 HSDGDVLLHALTDAL--LGALG---LGDIGKHFPDTDPRWKGADSRVLLRKAVELVKEKGYRIG   95 (159)
T ss_pred             ECHHHHHHHHHHHHH--HHHHH---HCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             162788999999888--87752---000224378623345688778999999999985588045


No 67 
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=21.13  E-value=55  Score=13.18  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=13.9

Q ss_pred             HHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf             9999986306603311232113566
Q gi|254780503|r  243 TIREAAFKHDIYATFMAKPMQNYPG  267 (461)
Q Consensus       243 ~ik~vA~~~G~~atFmpKP~~~~~G  267 (461)
                      -|.+.|+++|.+.||+|-+|.-.+.
T Consensus        96 ~iG~~ak~~~iRls~HPgqf~vL~S  120 (316)
T PRK02308         96 KIGALIKEHNMRLSFHPDQFVVLNS  120 (316)
T ss_pred             HHHHHHHHHCCEEEECCCCCEECCC
T ss_conf             9999999829458627976232689


No 68 
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=21.11  E-value=35  Score=14.52  Aligned_cols=59  Identities=19%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             EEEEEEHHHHHH--------CCCCCCCCCEEECC--CCCCCCCCCCCCCCCCC---C-CEEEEEECCCCEECCC
Q ss_conf             126761988730--------15677361000002--42774346655577888---7-7899960012453878
Q gi|254780503|r   44 RGKMMPSSKFIS--------NIPLTVPSAIYRHT--ISGESLHSPYLFHNERD---G-DLRLSPDLSTLSIVPW  103 (461)
Q Consensus        44 RgK~vp~~~f~~--------~~~~g~~~~~~~~~--~~g~~~~~~~~~~~~~~---~-D~~l~PD~~Tl~~lPw  103 (461)
                      .+|.+-+.++..        -...|+|..+-|.+  ++|..-..|+...-+-.   | |++|+-| +|=+-+|-
T Consensus       275 ~~kllEaQRL~qRT~yDLEMl~e~G~C~GIENYSRhl~GR~~GEpP~tLlDYF~gfP~DfLlviD-ESHVT~PQ  347 (667)
T TIGR00631       275 QGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLSGRKPGEPPYTLLDYFIGFPEDFLLVID-ESHVTLPQ  347 (667)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEE-ECCCCHHH
T ss_conf             79517888898868877888750673377000000216777631596477650468865089884-02575022


No 69 
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=21.10  E-value=55  Score=13.17  Aligned_cols=91  Identities=24%  Similarity=0.189  Sum_probs=55.5

Q ss_pred             CEEECCCCCEEEEECCCCCC--CCCC----CCCCCCCCCCCCCCCCCCC----C-CCH-----HHHHHHHHHHHHHH-HH
Q ss_conf             40232244179982167888--8777----8778888776678777766----5-442-----89999989976786-31
Q gi|254780503|r  144 KPIIAPEIEFYLIAKNEDPD--YPLQ----PPKGRSGRSILGGQSYSIM----G-INE-----FDEIIDDIWKFSEK-QG  206 (461)
Q Consensus       144 ~~~~g~E~EF~L~~~~~~~~--~~~~----~~~~~~~~~~~~~~~y~~~----~-~~~-----~~~~l~~i~~~l~~-~G  206 (461)
                      +++.|.|.-|+.|-...+-.  .+.+    --.+..+.-+.++++|+-.    + +.+     ...+++..+..|.. +|
T Consensus       203 EfL~G~E~S~~a~~DG~~~~~lp~aQDhKR~~dgD~GPNTGGMGAysP~~~~~P~l~~~~~~~~~~Ii~pti~~l~~e~g  282 (485)
T PRK05784        203 EKVDGVEYTVQVLTDGESVFPLPPVQDNPHAYEYGIGPETGGMGSVSGPGELLPFIEEEEYEEAVEIVKATVEAIRKETG  282 (485)
T ss_pred             ECCCCCEEEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             64468179999998299699892220576556899998999870067876677544799999998748999999986169


Q ss_pred             CCHHHH------HCCCCCCCCCEEECCCCCHHHH
Q ss_conf             102210------1012786420111266521137
Q gi|254780503|r  207 LEIDTL------IHEEGPAQFEINIRHGDPLKLA  234 (461)
Q Consensus       207 i~ve~~------~~E~gpGQ~Ei~~~~~~~l~aa  234 (461)
                      ++...+      .++.||--.|+|.++.||-..+
T Consensus       283 ~~y~GvLY~GlMit~~GPkVlEfN~RfGDPEtQ~  316 (485)
T PRK05784        283 ERYVGVLSGQMMLTALGPTVIEYYSRLGDPEALN  316 (485)
T ss_pred             CCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHH
T ss_conf             9727888767886189848999968878833888


No 70 
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=21.05  E-value=56  Score=13.17  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=26.5

Q ss_pred             CHHHHHHHHHHCCC-CEEEEEEECCCCCEEEEE
Q ss_conf             98999999971798-399999978898331267
Q gi|254780503|r   16 NWEQAAKWLKDNRI-EDVECITPDLAGIPRGKM   47 (461)
Q Consensus        16 ~~~~v~~~l~~~~I-~~V~v~~~Dl~G~~RgK~   47 (461)
                      .++.+.+.++...+ -+=++.|+|+.|..||=+
T Consensus        51 RLd~La~i~k~~k~evptt~~fvDIAGLvkGAS   83 (390)
T TIGR00092        51 RLDKLAEIYKPEKVEVPTTLEFVDIAGLVKGAS   83 (390)
T ss_pred             CHHHHHHHHCCCEEECCEEEEEEEECCCCCCCC
T ss_conf             333477640642041140489986223410001


No 71 
>KOG4116 consensus
Probab=20.99  E-value=26  Score=15.35  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC---CCCCC------CCCCCCCCEEEEE
Q ss_conf             521566654577764223212220766101344204655---75433------4243345003650
Q gi|254780503|r  292 SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMG---CPVNN------AWGYDNRTTAFRI  348 (461)
Q Consensus       292 ~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~---ap~~~------~WG~~NR~~~iRi  348 (461)
                      .||+..+...+|+.+         ...+|++||+....|   .|..|      +||.+-.+++-|-
T Consensus        25 aLSPfeQra~~g~F~---------~~~~n~fRr~~~~~~y~~iP~~Iv~yliy~wg~e~ne~l~rK   81 (90)
T KOG4116          25 ALSPFEQRAYAGFFD---------KAFPNMFRRFRSDQLYVVIPQFIVAYLIYDWGKETNEALNRK   81 (90)
T ss_pred             ECCCHHHCCCCCHHH---------HHHHHHHHHHHHCCEEEEECCCEEEEEEEECCHHHHHHHHCC
T ss_conf             518113021123565---------540799999554457998344018998886351676887611


No 72 
>pfam08777 RRM_3 RNA binding motif. This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif.
Probab=20.97  E-value=56  Score=13.15  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=26.3

Q ss_pred             HCCCHHHHHHHHHHC-CCCEEEEEEECCCCCEEEEE
Q ss_conf             589989999999717-98399999978898331267
Q gi|254780503|r   13 GVKNWEQAAKWLKDN-RIEDVECITPDLAGIPRGKM   47 (461)
Q Consensus        13 ~~~~~~~v~~~l~~~-~I~~V~v~~~Dl~G~~RgK~   47 (461)
                      ...+.+++...+++. .|+||.+.--|..|.+|-+.
T Consensus        11 ~~~sRediK~~f~~~g~V~yVD~~~Gd~eg~vRf~~   46 (102)
T pfam08777        11 KPTSREDIKEAFSQHGEVKYVDFLEGDKEGYVRFKT   46 (102)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECC
T ss_conf             888999999999835975689842788369999679


No 73 
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=20.02  E-value=58  Score=13.03  Aligned_cols=70  Identities=16%  Similarity=0.278  Sum_probs=46.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHH---HHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf             57521234257778999998---610276402322441799821678888777877888877667877776654-42899
Q gi|254780503|r  118 YNGKEVTYTPRNVLKRVLNF---YAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGI-NEFDE  193 (461)
Q Consensus       118 ~dG~p~~~~PR~iLkr~i~~---l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~  193 (461)
                      .+|.|...|-+......-++   .++.|+.|.|  |+|- |++.+                       +++.+. ..-+.
T Consensus       142 ~~~~PS~~~I~~Na~~LArYA~icQ~~glVPIV--EPEV-LmdG~-----------------------H~ie~c~~vt~~  195 (330)
T cd00948         142 GNGTPSELAIKENAHGLARYAAICQENGLVPIV--EPEV-LMDGD-----------------------HDIERCQEVTEK  195 (330)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCC-CCCCC-----------------------CCHHHHHHHHHH
T ss_conf             999986999999899999999999985981321--5010-01676-----------------------347999999999


Q ss_pred             HHHHHHHHHHHHHCCHHHHH
Q ss_conf             99989976786311022101
Q gi|254780503|r  194 IIDDIWKFSEKQGLEIDTLI  213 (461)
Q Consensus       194 ~l~~i~~~l~~~Gi~ve~~~  213 (461)
                      ++..+++.|...||.+|...
T Consensus       196 vL~~vf~~L~~~~V~leG~l  215 (330)
T cd00948         196 VLAAVYKALNDHHVLLEGTL  215 (330)
T ss_pred             HHHHHHHHHHHCCCCCCCCE
T ss_conf             99999999998297657744


Done!