HHsearch alignment for GI: 254780503 and conserved domain: pfam00120
>pfam00120 Gln-synt_C Glutamine synthetase, catalytic domain.
Probab=100.00 E-value=0 Score=608.65 Aligned_cols=254 Identities=40% Similarity=0.611 Sum_probs=235.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 34257778999998610276402322441799821678888777877888877667877776654428999998997678
Q gi|254780503|r 124 TYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSE 203 (461)
Q Consensus 124 ~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~ 203 (461)
T Consensus 1 P~~PR~~Lk~~~~~~~~~Gl~~~~g~E~EF~l~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~ 78 (257)
T pfam00120 1 PRDPRSILKRALARLAELGYTPYFGPEQEFFLFDDVRPGGGPPGG--YPDPRGPYYGGYFPVAPLDEARDIRRDIVKALE 78 (257)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989799999999999976995979956687998577777677668--879888767775777630318999999999999
Q ss_pred HHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 63110221010127864201112665211378999999999999863066033112321135662689998763136874
Q gi|254780503|r 204 KQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQ 283 (461)
Q Consensus 204 ~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~ 283 (461)
T Consensus 79 ~~Gi~ve~~~~E~gpgQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~HiH~SL~d-~~g~ 157 (257)
T pfam00120 79 AAGIPVEGIHHEVAPGQHEIDFRFADALEAADNLQLFKYVVKRVAEKHGLTATFMPKPIFGDNGSGMHTHQSLWD-KDGK 157 (257)
T ss_pred HCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEEC-CCCC
T ss_conf 779981886657579857996254649888699999999999999983967997035457999852179986675-8897
Q ss_pred CCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCEEEE
Q ss_conf 23358865--521566654577764223212220766101344204655754334243345003650223-886520353
Q gi|254780503|r 284 NIFSNPDG--SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS-DAKTKRIEN 360 (461)
Q Consensus 284 n~f~~~~~--~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~-~~~~~riE~ 360 (461)
T Consensus 158 n~f~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~Pt~NSYkRl~p~~~ap~~~~WG~~NR~a~iRip~~~~~~~~riE~ 237 (257)
T pfam00120 158 NLFADGDGYAGLSETARHFIGGILKHAPAITAYTAPTVNSYKRLVPGTEAPVYIAWGVRNRSASIRIPRGGGPKAGRVED 237 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCEEEE
T ss_conf 62468887422309999997638775687625368997656515799748666776156786117867789987746786
Q ss_pred ECCCCCCCHHHHHHHHHHHH
Q ss_conf 03587799899999999999
Q gi|254780503|r 361 RLPSSDTNPYLVLAASLACG 380 (461)
Q Consensus 361 R~~d~~aNPYL~laail~ag 380 (461)
T Consensus 238 R~~da~aNPYL~lAailaAG 257 (257)
T pfam00120 238 RLPDPDANPYLALAALLAAG 257 (257)
T ss_pred CCCCCCCCHHHHHHHHHHCC
T ss_conf 78878878999999998668