HHsearch alignment for GI: 254780503 and conserved domain: pfam00120

>pfam00120 Gln-synt_C Glutamine synthetase, catalytic domain.
Probab=100.00  E-value=0  Score=608.65  Aligned_cols=254  Identities=40%  Similarity=0.611  Sum_probs=235.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             34257778999998610276402322441799821678888777877888877667877776654428999998997678
Q gi|254780503|r  124 TYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSE  203 (461)
Q Consensus       124 ~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~  203 (461)
T Consensus         1 P~~PR~~Lk~~~~~~~~~Gl~~~~g~E~EF~l~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~   78 (257)
T pfam00120         1 PRDPRSILKRALARLAELGYTPYFGPEQEFFLFDDVRPGGGPPGG--YPDPRGPYYGGYFPVAPLDEARDIRRDIVKALE   78 (257)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             989799999999999976995979956687998577777677668--879888767775777630318999999999999


Q ss_pred             HHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             63110221010127864201112665211378999999999999863066033112321135662689998763136874
Q gi|254780503|r  204 KQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQ  283 (461)
Q Consensus       204 ~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~  283 (461)
T Consensus        79 ~~Gi~ve~~~~E~gpgQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~HiH~SL~d-~~g~  157 (257)
T pfam00120        79 AAGIPVEGIHHEVAPGQHEIDFRFADALEAADNLQLFKYVVKRVAEKHGLTATFMPKPIFGDNGSGMHTHQSLWD-KDGK  157 (257)
T ss_pred             HCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEEC-CCCC
T ss_conf             779981886657579857996254649888699999999999999983967997035457999852179986675-8897


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCEEEE
Q ss_conf             23358865--521566654577764223212220766101344204655754334243345003650223-886520353
Q gi|254780503|r  284 NIFSNPDG--SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS-DAKTKRIEN  360 (461)
Q Consensus       284 n~f~~~~~--~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~-~~~~~riE~  360 (461)
T Consensus       158 n~f~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~Pt~NSYkRl~p~~~ap~~~~WG~~NR~a~iRip~~~~~~~~riE~  237 (257)
T pfam00120       158 NLFADGDGYAGLSETARHFIGGILKHAPAITAYTAPTVNSYKRLVPGTEAPVYIAWGVRNRSASIRIPRGGGPKAGRVED  237 (257)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCEEEE
T ss_conf             62468887422309999997638775687625368997656515799748666776156786117867789987746786


Q ss_pred             ECCCCCCCHHHHHHHHHHHH
Q ss_conf             03587799899999999999
Q gi|254780503|r  361 RLPSSDTNPYLVLAASLACG  380 (461)
Q Consensus       361 R~~d~~aNPYL~laail~ag  380 (461)
T Consensus       238 R~~da~aNPYL~lAailaAG  257 (257)
T pfam00120       238 RLPDPDANPYLALAALLAAG  257 (257)
T ss_pred             CCCCCCCCHHHHHHHHHHCC
T ss_conf             78878878999999998668