Query         gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs    147 out of 2566
Neff          7.4 
Searched_HMMs 33803
Date          Wed Jun  1 17:09:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780503.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1f52_A Glutamine synthetase;  100.0       0       0  606.1  16.9  277  122-400     1-300 (301)
  2 >2bvc_A Glutamine synthetase 1 100.0       0       0  588.2  18.7  274  126-400     1-301 (302)
  3 >3fky_A Glutamine synthetase;  100.0       0       0  537.7  12.1  259  125-398     2-263 (264)
  4 >2ojw_A Glutamine synthetase;  100.0       0       0  513.9  11.2  249  124-385     1-255 (256)
  5 >2d3a_A Glutamine synthetase;  100.0       0       0  493.3  13.2  244  126-382     1-249 (252)
  6 >2j9i_A Glutamate-ammonia liga 100.0       0       0  336.7   7.3  147  249-398    20-168 (168)
  7 >2j9i_A Glutamate-ammonia liga  99.8 7.5E-23 2.2E-27  169.7  -0.8   86  177-262     9-95  (95)
  8 >2bvc_A Glutamine synthetase 1  99.8   2E-20   6E-25  153.7   9.5  102   14-129    11-113 (114)
  9 >1f52_A Glutamine synthetase;   99.8 8.6E-20 2.5E-24  149.6   9.8   96   16-121     1-97  (98)
 10 >2j9i_A Glutamate-ammonia liga  99.8 5.9E-19 1.8E-23  144.1   9.4   93   16-118     1-94  (95)
 11 >2j9i_A Glutamate-ammonia liga  99.2 1.5E-11 4.4E-16   95.4   4.1   59  399-460     2-61  (63)
 12 >1r8g_A Hypothetical protein Y  98.3 2.5E-06 7.3E-11   61.1   7.3  201  142-386     9-266 (372)
 13 >2gwd_A Glutamate cysteine lig  98.3 5.4E-06 1.6E-10   58.8   9.1  156  128-318    18-213 (422)
 14 >3fky_A Glutamine synthetase;   98.1 1.3E-05   4E-10   56.3   8.2   95   18-123    10-106 (106)
 15 >2d3a_A Glutamine synthetase;   97.9 5.1E-05 1.5E-09   52.4   7.5   88   26-124    15-103 (104)
 16 >2ojw_A Glutamine synthetase;   97.8 7.2E-05 2.1E-09   51.5   7.0   81   31-122     5-86  (87)
 17 >1va6_A Glutamate--cysteine li  95.9  0.0015 4.3E-08   42.9  -0.2  182  144-373     3-236 (254)
 18 >2d3a_A Glutamine synthetase;   95.0   0.012 3.6E-07   36.8   2.0   58  295-352   161-233 (252)
 19 >1vjz_A Endoglucanase; TM1752,  43.9      20 0.00059   15.7   4.5  107  126-256    33-141 (341)
 20 >1nxi_A Conserved hypothetical  41.3      22 0.00065   15.4   8.3   93  127-252    17-112 (132)
 21 >1x3l_A Hypothetical protein P  40.8      11 0.00033   17.3   1.1   46  222-267     8-54  (196)
 22 >1ni3_A YCHF GTPase, YCHF GTP-  32.7      23 0.00068   15.3   1.7   33   17-49     20-52  (149)
 23 >1v5s_A MAP/microtubule affini  32.4      30 0.00089   14.5   6.4   72  184-255    32-122 (126)
 24 >1eej_A Thiol:disulfide interc  30.7      27  0.0008   14.8   1.8   31  196-226     3-33  (49)
 25 >1zpv_A ACT domain protein; st  30.7      32 0.00095   14.3   3.7   70  193-264    17-86  (91)
 26 >3cny_A Inositol catabolism pr  28.8      23 0.00068   15.3   1.1   77  189-265    86-167 (301)
 27 >2j6v_A UV endonuclease, UVDE;  26.5      38  0.0011   13.8   5.1   23  244-266   108-130 (301)
 28 >1vkz_A Phosphoribosylamine--g  24.7      41  0.0012   13.6   2.4   87  148-234   103-206 (321)
 29 >3eua_A Putative fructose-amin  22.9      44  0.0013   13.4   2.4   47  413-461    32-78  (80)
 30 >2o36_A ThiMet oligopeptidase;  22.7      44  0.0013   13.4   2.5   34  426-459     3-40  (84)
 31 >2o3e_A Neurolysin; thermolysi  22.1      46  0.0014   13.3   2.8   34  426-459     3-40  (86)
 32 >1lml_A Leishmanolysin; metall  21.0      48  0.0014   13.2   3.3   37  236-272   156-194 (197)
 33 >1t3b_A Thiol:disulfide interc  20.5      32 0.00096   14.3   0.6   30  197-226     4-33  (49)
 34 >2r6u_A Uncharacterized protei  20.4      49  0.0015   13.1   4.2   95  131-227    36-133 (148)

No 1  
>>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:99-399)
Probab=100.00  E-value=0  Score=606.11  Aligned_cols=277  Identities=29%  Similarity=0.443  Sum_probs=248.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCC--EEECCCCCEEEEECCCCCCCCC-----------------CC-CCCCCCCCCCCCC
Q ss_conf             12342577789999986102764--0232244179982167888877-----------------78-7788887766787
Q gi|254780503|r  122 EVTYTPRNVLKRVLNFYAQNELK--PIIAPEIEFYLIAKNEDPDYPL-----------------QP-PKGRSGRSILGGQ  181 (461)
Q Consensus       122 p~~~~PR~iLkr~i~~l~~~G~~--~~~g~E~EF~L~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~  181 (461)
                      .|+.|||++|||++++++++|+.  +++|+|+|||||++..+.....                 .. .......+..+++
T Consensus         1 ~~~~~pR~vLkr~~~~l~~~G~~~~~~~g~E~EF~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (301)
T 1f52_A            1 GYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGG   80 (301)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             58889699999999999981996313434534799974443455666663344641113567876667887876576653


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH-HCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             7776654428999998997678631102210-101278642011126652113789999999999998630660331123
Q gi|254780503|r  182 SYSIMGINEFDEIIDDIWKFSEKQGLEIDTL-IHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAK  260 (461)
Q Consensus       182 ~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~-~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK  260 (461)
                      +|++.+.+..+++++++++.|+++||+|+++ |+|+||||+||++.|+++|++||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~h~E~~~gQ~Ei~~~~~~~l~aAD~~~~~r~~ik~vA~~~G~~atFmpK  160 (301)
T 1f52_A           81 YFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  160 (301)
T ss_dssp             SSBCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
T ss_conf             02677420078999999999997699717755022367877995067878888999999999999999984987897166


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             211356626899987631368742335-8865521566654577764223212220766101344204655754334243
Q gi|254780503|r  261 PMQNYPGSAMHIHQSVLDIKSNQNIFS-NPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGY  339 (461)
Q Consensus       261 P~~~~~GsG~H~h~SL~d~~~g~n~f~-~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~  339 (461)
                      |+.+.+|||||+|+|||+ + +.|+|. ++.+++|+.+++||||||+|++++++|++||+||||||+|++|||++++||.
T Consensus       161 P~~~~~Gsg~H~h~Sl~~-~-~~n~~~~~~~~~lS~~~~~fiaGil~h~~~l~a~~~pt~nSY~Rl~~~~~ap~~~~wG~  238 (301)
T 1f52_A          161 PMFGDNGSGMHCHMSLAK-N-GTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSA  238 (301)
T ss_dssp             SSTTSCCCCEEEEEEEEE-T-TEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEES
T ss_pred             CCCCCCCCEEEEEECCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEECC
T ss_conf             679999661479972456-9-98667777765522999999999999999977643799863321579865777531236


Q ss_pred             CCCCEEEEECCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             345003650223-8865203530358779989999999999999898468887433453000
Q gi|254780503|r  340 DNRTTAFRIPFS-DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ  400 (461)
Q Consensus       340 ~NR~~~iRip~~-~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~  400 (461)
                      +||+++||||.. +.+++|||+|++|++|||||++|+||+||++||+++++||+|+.+|+|+
T Consensus       239 ~NR~a~iRvp~~~~~~~~r~E~R~~da~aNPYl~lAail~agl~Gi~~~l~~~~~~~~~~~e  300 (301)
T 1f52_A          239 RNRSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYD  300 (301)
T ss_dssp             SCTTEEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSS
T ss_pred             CCCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             67753088303689877667863788887899999999999999998479999888786244


No 2  
>>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:115-416)
Probab=100.00  E-value=0  Score=588.19  Aligned_cols=274  Identities=30%  Similarity=0.473  Sum_probs=245.2

Q ss_pred             CHHHHHHHHHHHHHCCCCC--EEECCCCCEEEEECCC---------------------CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2577789999986102764--0232244179982167---------------------8888777877888877667877
Q gi|254780503|r  126 TPRNVLKRVLNFYAQNELK--PIIAPEIEFYLIAKNE---------------------DPDYPLQPPKGRSGRSILGGQS  182 (461)
Q Consensus       126 ~PR~iLkr~i~~l~~~G~~--~~~g~E~EF~L~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~  182 (461)
                      |||++||+++++++++|+.  +++|+|+|||||++..                     +.................+..+
T Consensus         1 DPR~~Lk~~~~~l~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (302)
T 2bvc_A            1 DPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGGY   80 (302)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTCCS
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             72016999999999749761453122012552133333555578766654223455678743467899878665557776


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf             77665442899999899767863110221010-12786420111266521137899999999999986306603311232
Q gi|254780503|r  183 YSIMGINEFDEIIDDIWKFSEKQGLEIDTLIH-EEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKP  261 (461)
Q Consensus       183 y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~-E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP  261 (461)
                      |++.+.+..++|+++|++.|+++||+||++|| |.+|||+|+++.|++++++||+++++|++||+||++||++|||||||
T Consensus        81 ~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~hee~~~gQ~Ei~~~~~~~l~aaD~~~~~r~~ik~vA~~~G~~atFmpKP  160 (302)
T 2bvc_A           81 FPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKP  160 (302)
T ss_dssp             CBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             54540356799999999778754971465203455563344256534005777488999999999999639647786420


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             1135662689998763136874233588-655215666545777642232122207661013442046557543342433
Q gi|254780503|r  262 MQNYPGSAMHIHQSVLDIKSNQNIFSNP-DGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYD  340 (461)
Q Consensus       262 ~~~~~GsG~H~h~SL~d~~~g~n~f~~~-~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~  340 (461)
                      +.+.+|||||+|+|||+ .++.|+|.++ .+++|+++++||||||+|+|++++|++||+||||||+|++|||++++||.+
T Consensus       161 ~~~~~Gsg~H~h~SL~~-~~~~~~~~~~~~~~ls~~~~~fiaGll~h~~~l~al~aptvnSY~Rl~~~~~ap~~~~WG~~  239 (302)
T 2bvc_A          161 LFGDNGSGMHCHQSLWK-DGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQR  239 (302)
T ss_dssp             STTSCCCCEEEEEEEEE-TTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEET
T ss_pred             CCCCCCCCEEEEEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHEEEECCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             68988766007888641-79886443344333379999999999861633311121465655668999757246630366


Q ss_pred             CCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             45003650223--8865203530358779989999999999999898468887433453000
Q gi|254780503|r  341 NRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ  400 (461)
Q Consensus       341 NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~  400 (461)
                      ||+++||||.+  +++.+|||+|+||++|||||++||||+||++||+++++|++|+.+++++
T Consensus       240 NR~~~iRv~~~~~~~~~~r~E~R~~da~aNPYlalAailaAgl~Gi~~~~~~~~p~~~~~~~  301 (302)
T 2bvc_A          240 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYE  301 (302)
T ss_dssp             CTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGG
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             54434422333678766168835899443588999999999999998089999967786012


No 3  
>>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} (A:107-370)
Probab=100.00  E-value=0  Score=537.71  Aligned_cols=259  Identities=18%  Similarity=0.149  Sum_probs=226.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             42577789999986102764023224417998216788887778778888776678777766544289999989976786
Q gi|254780503|r  125 YTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEK  204 (461)
Q Consensus       125 ~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~  204 (461)
                      .|||++|+|++++++  |+++++|+|+|||||+.+++.....   .........+..+|+....++.+++++++++.|+.
T Consensus         2 ~~pR~~L~~~~~~~~--g~~~~~g~E~EF~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~   76 (264)
T 3fky_A            2 FNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYDDVYGWP---KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLY   76 (264)
T ss_dssp             TCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTSSBTTCC---TTSBCSCSSSCTTCCSTTTCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH--HCCCEECCCEEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             015999999998787--4474671441389897788754577---76766765320123577751035799999999874


Q ss_pred             HHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC-HHHHHHHHHHHCCCCC
Q ss_conf             311022101012786420111266521137899999999999986306603311232113566-2689998763136874
Q gi|254780503|r  205 QGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPG-SAMHIHQSVLDIKSNQ  283 (461)
Q Consensus       205 ~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~G-sG~H~h~SL~d~~~g~  283 (461)
                      +||+||++|+|+|||||||++.|++++++||+++++|++||+||++||+.|||||||+.+..| ||+|.|+|+++ .++ 
T Consensus        77 ~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aaD~~~~~r~~ik~iA~~~g~~atFmpKP~~~~~~~~~~h~~~s~~~-~~~-  154 (264)
T 3fky_A           77 AGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKE-MRQ-  154 (264)
T ss_dssp             HTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSSSSCCCBEEEEEECHH-HHS-
T ss_pred             CCCCCEEECCCCCCCEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCCCC-CCC-
T ss_conf             245420110234554144400001001034088999999999999819807875413457667876132044000-458-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEEE
Q ss_conf             23358865521566654577764223212220766101344204655754334243345003650223--8865203530
Q gi|254780503|r  284 NIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIENR  361 (461)
Q Consensus       284 n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~R  361 (461)
                             ..+++.+++||||||+|++++++|++||+||||||.|++|||++++||.+||+++||||..  +++++|||+|
T Consensus       155 -------~~~~~~~~~~iaGll~h~~~~~~~~~pt~nsY~Rl~~~~~ap~~~~wg~~NR~~~iRi~~~~~~~~~~r~E~R  227 (264)
T 3fky_A          155 -------PGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDR  227 (264)
T ss_dssp             -------SSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHHHHHTCCCEEEC
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEECCCCCCEEEEECCCCCCCCCCEEEEC
T ss_conf             -------8857999999987556567664004656640532666576752355526788567996887788876089976


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             3587799899999999999998984688874334530
Q gi|254780503|r  362 LPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA  398 (461)
Q Consensus       362 ~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~  398 (461)
                      +||++|||||++|++|+|||+||+++++|+ |+++|+
T Consensus       228 ~~d~~aNPYl~~aa~l~agl~Gi~~~~~~~-p~~~~a  263 (264)
T 3fky_A          228 RPASNIDPYLVTGIMCETVCGAIDNADMTK-EFERES  263 (264)
T ss_dssp             CCBTTCCHHHHHHHHHHHHHCCBTTBCTTT-CCC---
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCC
T ss_conf             877777889999999999987875489998-567778


No 4  
>>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A (A:129-384)
Probab=100.00  E-value=0  Score=513.92  Aligned_cols=249  Identities=19%  Similarity=0.170  Sum_probs=219.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             34257778999998610276402322441799821678888777877888877667877776654428999998997678
Q gi|254780503|r  124 TYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSE  203 (461)
Q Consensus       124 ~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~  203 (461)
                      +.|||++|||++++++++|+.  +|+|+|||||+++++.....   .........+.++|+..+.++.++++++|++.|+
T Consensus         1 e~~pR~~Lkr~~~~~~~~g~~--~g~E~EF~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   75 (256)
T 2ojw_A            1 ETNLRHTCKRIMDMVSNQHPW--FGMEQEYTLMGTDGHPFGWP---SNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACL   75 (256)
T ss_dssp             TTCCHHHHHHHHHHTGGGCCE--EEEEEEEEEEC-CCSBTTCC---TTSCCSCSSSCTTCCSTTTCCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCE--EEEEEEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             546999999999875412743--30000479985356666776---6788887766444665202465899999999875


Q ss_pred             HHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC-CCCCCHHHHHHHHHHHCCCC
Q ss_conf             63110221010127864201112665211378999999999999863066033112321-13566268999876313687
Q gi|254780503|r  204 KQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPM-QNYPGSAMHIHQSVLDIKSN  282 (461)
Q Consensus       204 ~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~-~~~~GsG~H~h~SL~d~~~g  282 (461)
                      ++||++|++|+|+|||||||++.|+++++|||+++++|++||+||++||++|||||||+ .+.+|||+|+|+|||+.. +
T Consensus        76 ~~Gi~ie~~h~E~g~gQ~Ei~~~~~~~l~aaD~~~~~r~~ik~vA~~~gl~atFmpKP~~~~~~gsg~H~h~Sl~~~~-~  154 (256)
T 2ojw_A           76 YAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMR-E  154 (256)
T ss_dssp             HHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSCSSSCCCBEEEEEECHHHH-S
T ss_pred             HCCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECCCCCCC-C
T ss_conf             305311023114577506870023313345679999999999999984987886213567876667404431233446-7


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHCCCCCCCCCCC--CCCCCCEEEEECCC--CCCCCE
Q ss_conf             42335886552156665457776422321222-07661013442046557543342--43345003650223--886520
Q gi|254780503|r  283 QNIFSNPDGSETDNFRYFIGGLQKYIPNALVM-LAPYGNSYRRLVLDMGCPVNNAW--GYDNRTTAFRIPFS--DAKTKR  357 (461)
Q Consensus       283 ~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~-~~PtvNSYkRl~p~~~ap~~~~W--G~~NR~~~iRip~~--~~~~~r  357 (461)
                      +|+       +++...+|++|+++|+.+++++ ++||+||||||+|+.|||+.++|  |.+||+++||||..  +++++|
T Consensus       155 ~~~-------~~~~~~~~~~g~~~h~~~~~~~~~~ptvnsY~Rl~~~~~ap~~~~~s~G~~NR~~~iRi~~~~~~~~~~r  227 (256)
T 2ojw_A          155 ENG-------LKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGY  227 (256)
T ss_dssp             TTT-------HHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEEETCTTSSEEECHHHHHHTCSC
T ss_pred             CCC-------CCCCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCE
T ss_conf             788-------6555213444106599999976057760036542898658575632741688876689687678888618


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3530358779989999999999999898
Q gi|254780503|r  358 IENRLPSSDTNPYLVLAASLACGLLGIL  385 (461)
Q Consensus       358 iE~R~~d~~aNPYL~laail~agl~Gi~  385 (461)
                      ||+|++|++|||||++|+||+||||||+
T Consensus       228 ~E~R~~d~~aNPYl~laail~agl~Gi~  255 (256)
T 2ojw_A          228 FEDRRPSANCDPFSVTEALIRTCLLNET  255 (256)
T ss_dssp             EEECCCBTTCCHHHHHHHHHHHHTSCCC
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             9978977887899999999999756878


No 5  
>>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:105-356)
Probab=100.00  E-value=0  Score=493.29  Aligned_cols=244  Identities=18%  Similarity=0.161  Sum_probs=218.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             25777899999861027640232244179982167888877787788887766787777665442899999899767863
Q gi|254780503|r  126 TPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQ  205 (461)
Q Consensus       126 ~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~  205 (461)
                      |||++|||++++++++|+++++|+|+|||||+++++....  ........+...+.+|++.+.++.++++++|++.|+.+
T Consensus         1 DPR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~   78 (252)
T 2d3a_A            1 NKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLG--WPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYA   78 (252)
T ss_dssp             CCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTT--SCTTSBCSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             6278899999998746980676141389985135678887--65457875446754554310013367899999877631


Q ss_pred             HCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC-CCHHHHHHHHHHHCCCCCC
Q ss_conf             110221010127864201112665211378999999999999863066033112321135-6626899987631368742
Q gi|254780503|r  206 GLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNY-PGSAMHIHQSVLDIKSNQN  284 (461)
Q Consensus       206 Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~-~GsG~H~h~SL~d~~~g~n  284 (461)
                      ||+|+++|+|+|||||||++.|++++++||+++++|++||+||++||+.|||||||+.+. .|||+|+|+|+||.. +  
T Consensus        79 Gi~v~~~~~E~g~gQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hgl~atFmpKP~~~~~~~~~~h~h~s~~~~~-~--  155 (252)
T 2d3a_A           79 GINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMR-K--  155 (252)
T ss_dssp             TCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSCSSSCCCBEEEEEECTTTS-S--
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCCCCC-C--
T ss_conf             6453422236688637998621410012148999999999999982988996204555777777027640121356-5--


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEE
Q ss_conf             33588655215666545777642232122207661013442046--55754334243345003650223--886520353
Q gi|254780503|r  285 IFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLD--MGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIEN  360 (461)
Q Consensus       285 ~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~--~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~  360 (461)
                              .+....++++||+.|+++++++++|++|||+||+++  +|||++++||.+||+++||||.+  ++.++|||+
T Consensus       156 --------~~~~~~~~~~~i~~~~~~~~a~~a~~~~sy~r~~~~~~~~ap~~~~WG~~NR~~~vRv~~~~~~~~~~r~E~  227 (252)
T 2d3a_A          156 --------EGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFED  227 (252)
T ss_dssp             --------TTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHHHHHTTCCCEEE
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEE
T ss_conf             --------422355899999988867888722578606654698657887732772467877798577778787628997


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             0358779989999999999999
Q gi|254780503|r  361 RLPSSDTNPYLVLAASLACGLL  382 (461)
Q Consensus       361 R~~d~~aNPYL~laail~agl~  382 (461)
                      |++|++|||||++|++|+||||
T Consensus       228 R~~d~~aNPYl~laa~laagLd  249 (252)
T 2d3a_A          228 RRPASNMDPYVVTSMIAETTIV  249 (252)
T ss_dssp             CCCBTTCCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHCC
T ss_conf             9877877899999999997564


No 6  
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:96-127,A:223-358)
Probab=100.00  E-value=0  Score=336.75  Aligned_cols=147  Identities=25%  Similarity=0.318  Sum_probs=137.1

Q ss_pred             HHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf             6306603311232113566268999876313687423358865-521566654577764223212220766101344204
Q gi|254780503|r  249 FKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG-SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVL  327 (461)
Q Consensus       249 ~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~-~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p  327 (461)
                      ..-|+...|.+. |.+.+|||||+|+||||  +|+|+|+++++ ++|+.+++||||||+|++++++|++||+||||||+|
T Consensus        20 ~~~~~~~~~~~~-~~~~~GSG~H~H~SL~~--~g~N~f~~~~~~~lS~~~~~fiaGiL~h~~~l~a~~aPtvnSY~Rl~p   96 (168)
T 2j9i_A           20 AAAGLLSAFIAD-FAAAAGAGSHSIWDVGA--AGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAAAAAAA   96 (168)
T ss_dssp             SCSEECCEECCC-CTTSCCCBCCEEECEEE--TTEESSCSSSGGGCCHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTSS
T ss_pred             CCCEEEEEEEEE-ECCCCCCCEEEEEECCC--CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             983687631678-82123344279995348--998766899975431999998588662123211111111111111111


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             6557543342433450036502238-8652035303587799899999999999998984688874334530
Q gi|254780503|r  328 DMGCPVNNAWGYDNRTTAFRIPFSD-AKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA  398 (461)
Q Consensus       328 ~~~ap~~~~WG~~NR~~~iRip~~~-~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~  398 (461)
                      ++|||+++|||.+||+++||||... ++.+|||+|++|+++||||++|+||+||++||+++++|++|+.+|+
T Consensus        97 ~~~AP~~vsWG~~NRsaaiRIp~~~~~~~~riE~R~~da~aNPYL~lAail~Agl~GI~~~l~~~~p~~gda  168 (168)
T 2j9i_A           97 GAAAAAATAWGAAAAACALNIAAAAAAKGAQIENKAGAAAANPYLVLAATVAAGLDGIQSAGAAAGAAAADA  168 (168)
T ss_dssp             STTCCCEEEEESSCTTEEEEEECCSSGGGCEEEECSCBTTSCHHHHHHHHHHHHHHHHHHTCCCCSCBCSSS
T ss_pred             CCCCCCCEEECCCCCEEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             111101405437665279998502477764367437994522799999999999999870899989767775


No 7  
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:128-222)
Probab=99.84  E-value=7.5e-23  Score=169.70  Aligned_cols=86  Identities=13%  Similarity=-0.014  Sum_probs=77.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             6678777766544289999989976786311022101012786420111266-521137899999999999986306603
Q gi|254780503|r  177 ILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHG-DPLKLADQVFLFKRTIREAAFKHDIYA  255 (461)
Q Consensus       177 ~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~a  255 (461)
                      ...+.+|.........++++++.+.|.++||+|+++|+|+||||||+++.|+ +++++||+++++|.+||+||++||+.|
T Consensus         9 ~~~~~~y~~~~~~~~~~~l~~~~~~l~~~Gi~ve~~~~E~g~gQ~Ei~~~~~~~~l~aAD~~~~~r~~vk~vA~~~Gl~a   88 (95)
T 2j9i_A            9 INSKTISFPASTTAAAADQPQEAAAGGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIA   88 (95)
T ss_dssp             EECSSCEEEECCCTTCTTGGGSCCTTCCCSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             66778888877303445479999988855876312047663421111223301677888999999999999999869964


Q ss_pred             EECCCCC
Q ss_conf             3112321
Q gi|254780503|r  256 TFMAKPM  262 (461)
Q Consensus       256 tFmpKP~  262 (461)
                      ||||||.
T Consensus        89 TFmpKPs   95 (95)
T 2j9i_A           89 SAAAAAA   95 (95)
T ss_dssp             ECCTTSS
T ss_pred             CCCCCCC
T ss_conf             3332111


No 8  
>>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:1-114)
Probab=99.83  E-value=2e-20  Score=153.70  Aligned_cols=102  Identities=28%  Similarity=0.346  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHH-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             899899999997179839999997889833126761988730-1567736100000242774346655577888778999
Q gi|254780503|r   14 VKNWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFIS-NIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLS   92 (461)
Q Consensus        14 ~~~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~-~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~   92 (461)
                      ..+.+++.++|++++|++|+++|+|++|++|||.||+++|.+ ....|+.       ++++++.+   +...+++|++++
T Consensus        11 ~~~~~~i~~~l~~~~I~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~g~~-------f~~s~i~g---~~~~~~~D~~l~   80 (114)
T 2bvc_A           11 EKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLA-------FDGSSIRG---FQSIHESDMLLL   80 (114)
T ss_dssp             -CCHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCSHHHHHTCEE-------EETTSSTT---SCCGGGCEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCE-------EECCCCCC---CCCCCCCCEEEE
T ss_conf             68999999999878982999999999996789999899988999978990-------47757124---667887878999


Q ss_pred             EECCCCEECCCCCCCEEEEEEECCCCCCCCCCCCHHH
Q ss_conf             6001245387888770999974033575212342577
Q gi|254780503|r   93 PDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRN  129 (461)
Q Consensus        93 PD~~Tl~~lPw~~~~~a~vl~~~~~~dG~p~~~~PR~  129 (461)
                      ||++|++++||..+++|+|+|++++    |+..|||+
T Consensus        81 PD~~T~~~~Pw~~~~~a~v~~d~~~----p~~~~PR~  113 (114)
T 2bvc_A           81 PDPETARIDPFRAAKTLNINFFVHD----PFTLEPYS  113 (114)
T ss_dssp             ECGGGCEECSSCSSCEEEEEEEEEC----TTTCCBCT
T ss_pred             ECCCCCEECCCCCCCEEEEEEEEEC----CCCCCCCC
T ss_conf             8346328897479952899999742----88888066


No 9  
>>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:1-98)
Probab=99.82  E-value=8.6e-20  Score=149.59  Aligned_cols=96  Identities=22%  Similarity=0.319  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             98999999971798399999978898331267619887301-56773610000024277434665557788877899960
Q gi|254780503|r   16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISN-IPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPD   94 (461)
Q Consensus        16 ~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD   94 (461)
                      |++++.++|++++|++|+++|+|++|++|||.+|+++|.+. ...|+       .++++++.+   +...+++|++++||
T Consensus         1 t~~~i~~~l~~~~i~~V~~~~~Dl~G~~r~k~~p~~~~~~~~~~~g~-------~f~~ssi~g---~~~~~~~D~~~~PD   70 (98)
T 1f52_A            1 SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGK-------MFDGSSIGG---WKGINESDMVLMPD   70 (98)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEEEGGGCCHHHHHHCE-------EEEGGGSTT---SCCSSCCEEEEEEC
T ss_pred             CHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCC-------CCCCCCCCC---CCCCCCCCEEEEEC
T ss_conf             98999999998898499999998999878999849997799985897-------114654356---77798788899975


Q ss_pred             CCCCEECCCCCCCEEEEEEECCCCCCC
Q ss_conf             012453878887709999740335752
Q gi|254780503|r   95 LSTLSIVPWEMDPTAQIVCDVVDYNGK  121 (461)
Q Consensus        95 ~~Tl~~lPw~~~~~a~vl~~~~~~dG~  121 (461)
                      ++|++++||.++++|+|+|++++.||.
T Consensus        71 ~~T~~~~Pw~~~~~a~V~~d~~~~dG~   97 (98)
T 1f52_A           71 ASTAVIDPFFADSTLIIRCDILEPGTL   97 (98)
T ss_dssp             GGGCEECSSCSSCEEEEEEEEECTTTC
T ss_pred             CCEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             782289986889818999999868998


No 10 
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:1-95)
Probab=99.79  E-value=5.9e-19  Score=144.05  Aligned_cols=93  Identities=24%  Similarity=0.253  Sum_probs=81.1

Q ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             98999999971798399999978898331267619887301-56773610000024277434665557788877899960
Q gi|254780503|r   16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISN-IPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPD   94 (461)
Q Consensus        16 ~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD   94 (461)
                      |+++++++|++++|++|++.|+|++|++|||.+|+++|.+. ...|.       .++++++.+   +...+++|++++||
T Consensus         1 t~~~v~~~l~~~~i~~V~~~~~Di~G~~Rgk~i~~~~~~~~~~~~g~-------~~d~s~i~g---~~~~~~~D~~~~Pd   70 (95)
T 2j9i_A            1 SAEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGY-------LEDGEVNAG---AAGAAASDIVLMPE   70 (95)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCCTTHHHHCE-------EECGGGSTT---TCCTTCCCEEEEEC
T ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECHHHHHHHHHCCCE-------ECCCCCCCC---CCCCCCCCEEEEEC
T ss_conf             98999999997899699999798999846899869999988746977-------036664367---67788888899987


Q ss_pred             CCCCEECCCCCCCEEEEEEECCCC
Q ss_conf             012453878887709999740335
Q gi|254780503|r   95 LSTLSIVPWEMDPTAQIVCDVVDY  118 (461)
Q Consensus        95 ~~Tl~~lPw~~~~~a~vl~~~~~~  118 (461)
                      ++|++++||..+++|+|+|+++++
T Consensus        71 ~~T~~~~Pw~~~~~a~vl~d~~dp   94 (95)
T 2j9i_A           71 LSTAAVAAAAAAATAAVICDGGAA   94 (95)
T ss_dssp             SSCCEECTTSSSSEEEEEEEEESS
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCC
T ss_conf             898743333344322689679997


No 11 
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:359-421)
Probab=99.18  E-value=1.5e-11  Score=95.41  Aligned_cols=59  Identities=20%  Similarity=0.224  Sum_probs=53.0

Q ss_pred             CCCHHCCCCCHHHHHHHHHCC-HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             003110478989999998659-89887355899999999999999998638997899876317
Q gi|254780503|r  399 NQEAINLPRGLLEAVTLLENT-SHFKDIFGSQFIDMYANLKRNEFETFMQVISPWEREFLLLN  460 (461)
Q Consensus       399 ~~~~~~LP~sL~eAl~~l~~d-~~l~~~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~~  460 (461)
                      ..+.+.||.||.+||++|++| ++++++||++|++.|+++|++||++|   |||||+++||..
T Consensus         2 ~~~i~~LP~sL~eAl~al~~d~e~l~~~lg~~~i~~y~~~K~~E~~~~---vt~wE~~~yl~~   61 (63)
T 2j9i_A            2 AAAPSEIPGKMEDALAALEQDAECLKAGLGEAFIRAAVAAAKYELENE---ETDAEGNKFLEY   61 (63)
T ss_dssp             CSSCCCCCSSHHHHHHHHTTCCSSSSCSCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHH
T ss_conf             667000278999999999838499998669999999999999999986---484269999885


No 12 
>>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} (A:)
Probab=98.30  E-value=2.5e-06  Score=61.10  Aligned_cols=201  Identities=15%  Similarity=0.127  Sum_probs=114.7

Q ss_pred             CCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
Q ss_conf             76402322441799821678888777877888877667877776654428999998997678631102210101278642
Q gi|254780503|r  142 ELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQF  221 (461)
Q Consensus       142 G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~  221 (461)
                      +=...+|+|.|+++++.+.....                        .....++..+....     .-..+..|.+..|.
T Consensus         9 ~~~~~~GiE~E~~~Vd~~~~~~~------------------------~~~~~ll~~l~~~~-----~~~~i~~E~~~~~i   59 (372)
T 1r8g_A            9 SEPFTLGIELEXQVVNPPGYDLS------------------------QDSSXLIDAVKNKI-----TAGEVKHDITESXL   59 (372)
T ss_dssp             CCTTCEEEEEEEEEEETTTTEEC------------------------SCCHHHHTTTSSSC-----SSSEEEECSSSSEE
T ss_pred             CCCCCEEEEEEEEEECCCCCCCC------------------------CCHHHHHHHHHCCC-----CCCCCCCCCCCCEE
T ss_conf             99983488876632679987767------------------------75699999732324-----68861103777369


Q ss_pred             CEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEE---ECCCCCC-----------------------CCCCHHHHHHH
Q ss_conf             0111266-5211378999999999999863066033---1123211-----------------------35662689998
Q gi|254780503|r  222 EINIRHG-DPLKLADQVFLFKRTIREAAFKHDIYAT---FMAKPMQ-----------------------NYPGSAMHIHQ  274 (461)
Q Consensus       222 Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~at---FmpKP~~-----------------------~~~GsG~H~h~  274 (461)
                      |++..+. ++-.+.+.+...+..+.+++.++|+...   +.|+.-.                       ...-+|+|+|+
T Consensus        60 El~t~p~~~~~~~~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~rY~~~~~~~~~~~~~~~~~g~hvn~  139 (372)
T 1r8g_A           60 ELATDVCRDINQAAGQFSAXQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHV  139 (372)
T ss_dssp             EEECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEE
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCEEEC
T ss_conf             97487879999999999999999999876516612435789789832134676078999998605288774001524755


Q ss_pred             HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---------HHHHHHHCCCC-----CCCCCCCCC-
Q ss_conf             763136874233588655215666545777642232122207661---------01344204655-----754334243-
Q gi|254780503|r  275 SVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYG---------NSYRRLVLDMG-----CPVNNAWGY-  339 (461)
Q Consensus       275 SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Ptv---------NSYkRl~p~~~-----ap~~~~WG~-  339 (461)
                      |+-|.               +..-+-+-.+..++|.+.+|++.+.         -|||-..=+.+     -+.+-+|.. 
T Consensus       140 ~~~~~---------------~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~S~R~~~~~~~~~~~~~~~~~~~~~~  204 (372)
T 1r8g_A          140 GCASG---------------DDAIYLLHGLSRFVPHFIALSAASPYXQGTDTRFASSRPNIFSAFPDNGPXPWVSNWQQF  204 (372)
T ss_dssp             ECSSH---------------HHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTSTTCSSCCCCSSHHHH
T ss_pred             CCCCH---------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             88999---------------999999999999989999986389000599885431057887218676887545663778


Q ss_pred             ------CCCCEEEEEC-------CCCCCCCEEEEECCCCCCCH--HHHHHHHHHHHHHHHHH
Q ss_conf             ------3450036502-------23886520353035877998--99999999999998984
Q gi|254780503|r  340 ------DNRTTAFRIP-------FSDAKTKRIENRLPSSDTNP--YLVLAASLACGLLGILQ  386 (461)
Q Consensus       340 ------~NR~~~iRip-------~~~~~~~riE~R~~d~~aNP--YL~laail~agl~Gi~~  386 (461)
                            --++..+...       ...+...+||+|++|....+  +++.++.+.+-+.....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~vr~~~~~~~iE~R~~D~~p~~~~~~~~~af~~~l~~~~~~  266 (372)
T 1r8g_A          205 EALFRCLSYTTXIDSIKDLHWDIRPSPHFGTVEVRVXDTPLTLSHAVNXAGLIQATAHWLLT  266 (372)
T ss_dssp             HHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999875246011355412205777666645334678999889999999999999999987


No 13 
>>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422)
Probab=98.30  E-value=5.4e-06  Score=58.83  Aligned_cols=156  Identities=17%  Similarity=0.040  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--
Q ss_conf             777899999861027640232244179982167888877787788887766787777665442899999899767863--
Q gi|254780503|r  128 RNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQ--  205 (461)
Q Consensus       128 R~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~--  205 (461)
                      ...|.+.++.-...+-.+.+|+|+|+++++.+....                      ........++..+.......  
T Consensus        18 ~~~l~~~~~~~~~~~~~~~~GiE~E~~~Vd~~~~~~----------------------~~~~~~~~~l~~L~~~~~~~~~   75 (422)
T 2gwd_A           18 REDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRP----------------------MKYDQIAELLNSIAERFEWEKV   75 (422)
T ss_dssp             HHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTCCB----------------------CCHHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCC----------------------CCHHHHHHHHHHHHHHCCCCEE
T ss_conf             999999998378884567589866614666798977----------------------9837799999999987398531


Q ss_pred             -------HCCH-HHHHCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC-CCC-----------
Q ss_conf             -------1102-2101012786420111266-521137899999999999986306603311232-113-----------
Q gi|254780503|r  206 -------GLEI-DTLIHEEGPAQFEINIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMAKP-MQN-----------  264 (461)
Q Consensus       206 -------Gi~v-e~~~~E~gpGQ~Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP-~~~-----------  264 (461)
                             .+.. -+.++|...+|.|++..+. +.-++++.+...+..+..++..+|....-+.-+ +..           
T Consensus        76 ~~~~~~~~~~~~~~~~~e~~~~qiE~~t~p~~~~~~l~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~r  155 (422)
T 2gwd_A           76 MEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGR  155 (422)
T ss_dssp             EETTEEEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCSCHH
T ss_pred             CCCCCEEEECCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf             36885554337996451279966897156768899999999999999999998638101135534456744465556721


Q ss_pred             ---------CCC--------HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             ---------566--------268999876313687423358865521566654577764223212220766
Q gi|254780503|r  265 ---------YPG--------SAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPY  318 (461)
Q Consensus       265 ---------~~G--------sG~H~h~SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt  318 (461)
                               .-|        +|+|+|+|+-+          .   -.+.+..-+-.+..++|-+.++++.+
T Consensus       156 y~~l~~~~~~~~~~~~~~~~~~~~~qv~~~~----------~---~~~~~~~~~~~~~~~~p~l~aL~anS  213 (422)
T 2gwd_A          156 YDIMRNYMPKVGSLGLDMMLRTCTVQVNLDF----------S---SEADMIRKFRAGLALQPIATALFANS  213 (422)
T ss_dssp             HHHHHHHGGGTCSSHHHHHHHBCEEEEEECC----------S---SHHHHHHHHHHHHHHHHHHHHHHCCB
T ss_pred             HHHHHHHHHHHCCCCCHHHHCCCCEEECCCC----------C---CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             6789999985056440345300220542688----------8---67889999999999877999998558


No 14 
>>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} (A:1-106)
Probab=98.14  E-value=1.3e-05  Score=56.26  Aligned_cols=95  Identities=18%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             HHHHHHHH--HCCCCEEEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             99999997--1798399999978898331267619887301567736100000242774346655577888778999600
Q gi|254780503|r   18 EQAAKWLK--DNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDL   95 (461)
Q Consensus        18 ~~v~~~l~--~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~   95 (461)
                      +-+.+++.  +.+--.+.++|+|=.|-+|+|.-..+...+     -+.-+-.|.|+|++-.-.    ...++|++|+|..
T Consensus        10 ~~l~~y~~L~q~~kv~aeYIWIDGtg~lRsKtrtl~~~p~-----~~~dlP~WnfDGSST~QA----~G~nSd~~L~Pva   80 (106)
T 3fky_A           10 QILQKYLELDQRGRIIAEYVWIDGTGNLRSKGRTLKKRIT-----SIDQLPEWNFDGSSTNQA----PGHDSDIYLKPVA   80 (106)
T ss_dssp             -----------CCCEEEEEEEECSSSCEEEEEEEESSCCC-----SGGGSCCEEECGGGTTSS----CCCC--EEEEEEE
T ss_pred             HHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEECCCCCC-----CHHHCCCCCCCCCCCCCC----CCCCCEEEEEECE
T ss_conf             8999984767578079999997898887756466457889-----964598231578757874----0688508998271


Q ss_pred             CCCEECCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             1245387888770999974033575212
Q gi|254780503|r   96 STLSIVPWEMDPTAQIVCDVVDYNGKEV  123 (461)
Q Consensus        96 ~Tl~~lPw~~~~~a~vl~~~~~~dG~p~  123 (461)
                        ++..|+.....-.|+|++++.||+|.
T Consensus        81 --i~~DPfr~g~n~LVlce~~~~dg~P~  106 (106)
T 3fky_A           81 --YYPDPFRRGDNIVVLAACYNNDGTPN  106 (106)
T ss_dssp             --EEECTTTCTTCEEEEEEEECTTSSBC
T ss_pred             --EECCCCCCCCCEEEEEEEECCCCCCC
T ss_conf             --86799989997489964202577531


No 15 
>>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:1-104)
Probab=97.91  E-value=5.1e-05  Score=52.43  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             HCCCCEEEEEEECCCC-CEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCC
Q ss_conf             1798399999978898-331267619887301567736100000242774346655577888778999600124538788
Q gi|254780503|r   26 DNRIEDVECITPDLAG-IPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLSIVPWE  104 (461)
Q Consensus        26 ~~~I~~V~v~~~Dl~G-~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~~Tl~~lPw~  104 (461)
                      ..+.-.+.++|+|=.| .+|+|.-..+...+     -+..+-.|.|+|++-.-.    ...++|++|+|.  .++..|+.
T Consensus        15 ~~~kv~aeYIWiDG~g~~lRsKtrtl~~~p~-----~~~dlP~WnfDGSST~QA----~G~~Sd~~L~Pv--a~~~DPfr   83 (104)
T 2d3a_A           15 TTEKIIAEYIWIGGSGMDLRSKARTLPGPVT-----DPSKLPKWNYDGSSTGQA----PGEDSEVILYPQ--AIFKDPFR   83 (104)
T ss_dssp             TCSCEEEEEEEECTTSSCEEEEEEEESSCCC-----CGGGSCCEEEEGGGTTSS----CSSSCEEEEEEE--EEEECTTT
T ss_pred             CCCEEEEEEEEECCCCCCCCCEEEEECCCCC-----CHHHCCCCCCCCCCCCCC----CCCCCEEEEEEE--EEEECCCC
T ss_conf             6777999999946899875542388156889-----975698734266411586----078777999830--98334456


Q ss_pred             CCCEEEEEEECCCCCCCCCC
Q ss_conf             87709999740335752123
Q gi|254780503|r  105 MDPTAQIVCDVVDYNGKEVT  124 (461)
Q Consensus       105 ~~~~a~vl~~~~~~dG~p~~  124 (461)
                      ......|+|+++.+||+|.+
T Consensus        84 ~g~n~LVlce~~~~dg~P~~  103 (104)
T 2d3a_A           84 RGNNILVMCDCYTPAGEPIP  103 (104)
T ss_dssp             CTTCEEEEEEEECTTSCBCT
T ss_pred             CCCCEEEEEEEECCCCCCCC
T ss_conf             79966999885237886224


No 16 
>>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A (A:42-128)
Probab=97.81  E-value=7.2e-05  Score=51.47  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             EEEEEEECCCC-CEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCEE
Q ss_conf             99999978898-33126761988730156773610000024277434665557788877899960012453878887709
Q gi|254780503|r   31 DVECITPDLAG-IPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTA  109 (461)
Q Consensus        31 ~V~v~~~Dl~G-~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~~Tl~~lPw~~~~~a  109 (461)
                      .+.++|+|=.| .+|+|.-..+...+     -+..+-.|.|+|++-.-.    ...++|++|.|.  .++..|+......
T Consensus         5 ~aeYIWiDG~g~~lRsKtrtl~~~p~-----~~~dlP~WnfDGSST~QA----~G~~Sd~~L~Pv--ai~~DPfR~g~ni   73 (87)
T 2ojw_A            5 QAMYIWIDGTGEGLRCKTRTLDSEPK-----CVEELPEWNFDGSSTLQS----EGSNSDMYLVPA--AMFRDPFRKDPNK   73 (87)
T ss_dssp             EEEEEEECTTSSCEEEEEEEESSCCS-----SGGGSCCEEEEGGGTTSS----BTTBCEEEEEEE--EEEECTTTCTTCE
T ss_pred             EEEEEEECCCCCCCCCCCEEECCCCC-----CHHHCCCCCCCCCCCCCC----CCCCCEEEEECC--EECCCCCCCCCCE
T ss_conf             99999855899886666246147888-----876797715666645787----678825999678--0214899999978


Q ss_pred             EEEEECCCCCCCC
Q ss_conf             9997403357521
Q gi|254780503|r  110 QIVCDVVDYNGKE  122 (461)
Q Consensus       110 ~vl~~~~~~dG~p  122 (461)
                      .|||+++.+||+|
T Consensus        74 LVlCe~~~~dg~P   86 (87)
T 2ojw_A           74 LVLCEVFKYNRRP   86 (87)
T ss_dssp             EEEEEEECTTSCB
T ss_pred             EEEEEEECCCCCC
T ss_conf             9999500168862


No 17 
>>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} (A:19-156,A:243-337,A:461-481)
Probab=95.86  E-value=0.0015  Score=42.87  Aligned_cols=182  Identities=16%  Similarity=0.103  Sum_probs=99.4

Q ss_pred             CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE
Q ss_conf             40232244179982167888877787788887766787777665442899999899767863110221010127864201
Q gi|254780503|r  144 KPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEI  223 (461)
Q Consensus       144 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei  223 (461)
                      ...+|+|.||++++.+.....+..+.                        .+       . .-..-..+.+|..-.|.|+
T Consensus         3 ~~t~GIE~E~llVD~~g~~a~~~hp~------------------------~L-------g-sal~~p~IttElses~LEi   50 (254)
T 1va6_A            3 GIQRGLERETLRVNADGTLATTGHPE------------------------AL-------G-SALTHKWITTDFAEALLEF   50 (254)
T ss_dssp             TCEEEEEEEEEEECTTSCBCCSCSCG------------------------GG-------C-CTTTCSSEEECSBTTEEEE
T ss_pred             CCCCCEEEEHHEECCCCCCCCCCCCH------------------------HH-------C-CCCCCCCCCCCCCHHHHHH
T ss_conf             58746441010268897846999974------------------------33-------8-7531779887557887773


Q ss_pred             EECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC--------CCCCC---------------CC----------HH
Q ss_conf             11266-52113789999999999998630660331123--------21135---------------66----------26
Q gi|254780503|r  224 NIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMAK--------PMQNY---------------PG----------SA  269 (461)
Q Consensus       224 ~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK--------P~~~~---------------~G----------sG  269 (461)
                      +..+. ++-.+.+.+.-.+..+.+.|..+|+...=||-        |+...               .+          +|
T Consensus        51 ~Tpp~~~~~e~l~~L~~l~~~v~~~a~~e~lw~~Smg~~l~~~~~iP~A~~g~sn~~~~k~rYR~~l~~ryg~~~q~I~G  130 (254)
T 1va6_A           51 ITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISG  130 (254)
T ss_dssp             ECCCBSCHHHHHHHHHHHHHHHHTSSTTCEECCSSSCSSCCTTCCCCBCCCCSSHHHHHHHHHHHHHHHHHCHHHHTCCE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCC
T ss_conf             78999999999999999999999608875326778898888736666201687543158999999999971504421011


Q ss_pred             HHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH---CCCCC-CCCCCCCCCC-CC
Q ss_conf             89998763-1368742335886552156665457776422321222076610134420---46557-5433424334-50
Q gi|254780503|r  270 MHIHQSVL-DIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLV---LDMGC-PVNNAWGYDN-RT  343 (461)
Q Consensus       270 ~H~h~SL~-d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~---p~~~a-p~~~~WG~~N-R~  343 (461)
                      +|+|+|+= +.+.+-++-++.       ...++.+|-+.+       .-.-..|.++.   .|.|- =+..---.+| --
T Consensus       131 vHvhvsvp~~~q~~~~~~~n~-------l~~y~~~l~~a~-------~~~~~~y~~~g~~~~g~~~qln~~~lq~ene~y  196 (254)
T 1va6_A          131 VHYNFSLPNKSQSNLGITFND-------LYEYVAGLKQAI-------KTPSEEYAKIGIEKDGKRLQINSNVLQIENELY  196 (254)
T ss_dssp             EEEEEECCCGGGTTSCCCSSC-------HHHHHHHHHHHH-------TCBCHHHHTTCSEETTEECCSCSBSCSSGGGCC
T ss_pred             EEECCCCCCCCCCCCCCCCCC-------CHHHHHHHHHHH-------CCCCHHHHHHCCCCCCHHHHHHCCCCCCHHHHC
T ss_conf             233245776643334442222-------188899999997-------598426888575788667664216222324422


Q ss_pred             EEEEECC---CCC---------CCCEEEEECCCCCCCHHHHH
Q ss_conf             0365022---388---------65203530358779989999
Q gi|254780503|r  344 TAFRIPF---SDA---------KTKRIENRLPSSDTNPYLVL  373 (461)
Q Consensus       344 ~~iRip~---~~~---------~~~riE~R~~d~~aNPYL~l  373 (461)
                      ..||-+.   .+.         .-..||+|+.|  .||+.-+
T Consensus       197 ~~irpk~~~~~~e~~~~al~~~gv~yie~r~ld--~np~~~~  236 (254)
T 1va6_A          197 APIRPKRVTRSGESPSDALLRGGIEYIEVRSLD--INPFGGT  236 (254)
T ss_dssp             CSEEEECCCCTTCCHHHHHHHHCCCEEEEEEEE--CCTT--C
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEC--CCCCHHH
T ss_conf             542556678888668999985587579876303--7740999


No 18 
>>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:105-356)
Probab=94.96  E-value=0.012  Score=36.81  Aligned_cols=58  Identities=9%  Similarity=-0.145  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH----HC--------CCCCCCCCCCCCC---CCCEEEEECCCC
Q ss_conf             5666545777642232122207661013442----04--------6557543342433---450036502238
Q gi|254780503|r  295 DNFRYFIGGLQKYIPNALVMLAPYGNSYRRL----VL--------DMGCPVNNAWGYD---NRTTAFRIPFSD  352 (461)
Q Consensus       295 ~~~~~fiaGil~h~~al~a~~~PtvNSYkRl----~p--------~~~ap~~~~WG~~---NR~~~iRip~~~  352 (461)
                      ..++++|+|++.|+.++++++++++|+|+|.    .|        +..+++.++.+..   ++-.=+|+|.+.
T Consensus       161 ~~~~~~i~~~~~~~~a~~a~~~~sy~r~~~~~~~~ap~~~~WG~~NR~~~vRv~~~~~~~~~~r~E~R~~d~~  233 (252)
T 2d3a_A          161 VIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASN  233 (252)
T ss_dssp             HHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHHHHHTTCCCEEECCCBTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCCCC
T ss_conf             5899999988867888722578606654698657887732772467877798577778787628997987787


No 19 
>>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} (A:)
Probab=43.87  E-value=20  Score=15.66  Aligned_cols=107  Identities=17%  Similarity=0.039  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHHCCCCC-EEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             2577789999986102764-023224417998216788887778778888776678777766544289999989976786
Q gi|254780503|r  126 TPRNVLKRVLNFYAQNELK-PIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEK  204 (461)
Q Consensus       126 ~PR~iLkr~i~~l~~~G~~-~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~  204 (461)
                      .-...-++.++.+++.|+. +++.+...-..-...             .       +.    .-...-..++++++.+.+
T Consensus        33 ~~~~~~~~di~~~k~~G~n~vR~~i~w~~~~~~~~-------------~-------~~----~~~~~~~~~d~~v~~~~~   88 (341)
T 1vjz_A           33 STGNFKEEDFLWXAQWDFNFVRIPXCHLLWSDRGN-------------P-------FI----IREDFFEKIDRVIFWGEK   88 (341)
T ss_dssp             CCCCCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSC-------------T-------TC----CCGGGHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCC-------------C-------CC----CCHHHHHHHHHHHHHHHH
T ss_conf             46677599999999859988991166999057888-------------7-------66----598999999999999997


Q ss_pred             HHCCH-HHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             31102-21010127864201112665211378999999999999863066033
Q gi|254780503|r  205 QGLEI-DTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYAT  256 (461)
Q Consensus       205 ~Gi~v-e~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~at  256 (461)
                      .||.+ -..||..++-+.-........-...+..-.++..++.+|++++=..+
T Consensus        89 ~Gi~vii~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ry~~~~~  141 (341)
T 1vjz_A           89 YGIHICISLHRAPGYSVNKEVEEKTNLWKDETAQEAFIHHWSFIARRYKGISS  141 (341)
T ss_dssp             HTCEEEEEEEEETTEESCTTSCCSSCTTTCHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             59947997236887666777655542346524577799999999998721587


No 20 
>>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} (A:)
Probab=41.27  E-value=22  Score=15.41  Aligned_cols=93  Identities=16%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             57778999998610276402322441799821678888777877888877667877776654428999998997678631
Q gi|254780503|r  127 PRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQG  206 (461)
Q Consensus       127 PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~G  206 (461)
                      |+..-+++++.+++.|..+-.-.++||++.=.+                                ++-++.+...+.+.|
T Consensus        17 ~~~~n~~Vl~~L~e~G~dl~~~~~Ieh~~~F~~--------------------------------~~~~e~~a~~~~~~g   64 (132)
T 1nxi_A           17 QKEETRDIIQALLEDGSDPDALYEIEHHLFAED--------------------------------FDKLEKAAVEAFKMG   64 (132)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSCEEEEEEEEESC--------------------------------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC--------------------------------HHHHHHHHHHHHHCC
T ss_conf             798899999999966998576736669999699--------------------------------899999999999879


Q ss_pred             CCHHHH---HCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             102210---1012786420111266521137899999999999986306
Q gi|254780503|r  207 LEIDTL---IHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHD  252 (461)
Q Consensus       207 i~ve~~---~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G  252 (461)
                      ..|+..   ..|.|.+-|.+.+.....+...+=.-... -+-.+|.++|
T Consensus        65 ~~v~~~~e~e~edg~~~~~~~~~~~~~l~~~~I~~~~~-~L~~lA~~~~  112 (132)
T 1nxi_A           65 FEVLEAEETEDEDGNKLLCFDATMQSALDAKLIDEQVE-KLVNLAEKFD  112 (132)
T ss_dssp             CCCBCCCCBCCSSCSSBEEEEEEEEECSCHHHHHHHHH-HHHHHHHHHT
T ss_pred             CEEECCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHH-HHHHHHHHHC
T ss_conf             87733543455789858999999964699899999999-9999999959


No 21 
>>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:1-22,A:267-440)
Probab=40.82  E-value=11  Score=17.34  Aligned_cols=46  Identities=24%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf             011126-6521137899999999999986306603311232113566
Q gi|254780503|r  222 EINIRH-GDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPG  267 (461)
Q Consensus       222 Ei~~~~-~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~G  267 (461)
                      ||.++. .+++++||....+....++.|++.||.+.-.+-.+.+..-
T Consensus         8 ~~~~~~~~~~~~~~~sN~~al~AA~~~A~~~Gy~~~ils~~l~GeAr   54 (196)
T 1x3l_A            8 EIGLRLVGEAIKAADSNSISCEAIAREAQRLGFKAYIMTTTLEGEAK   54 (196)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCEEEEEEEEECSBHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHH
T ss_conf             99999999999852971899999999999869957603788888589


No 22 
>>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} (A:51-98,A:292-392)
Probab=32.70  E-value=23  Score=15.25  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf             899999997179839999997889833126761
Q gi|254780503|r   17 WEQAAKWLKDNRIEDVECITPDLAGIPRGKMMP   49 (461)
Q Consensus        17 ~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp   49 (461)
                      ++.+.++.+.+.+-.-.+.|+|+.|..||..+.
T Consensus        20 l~~l~~~~~~~k~v~~~~~~~DiaGlv~g~~l~   52 (149)
T 1ni3_A           20 FDWLCEAYKPKSRVPAFLTVFDIAGLTKGSXLP   52 (149)
T ss_dssp             HHHHHHHHCCSEEECEEEEEECTGGGCCCCSHH
T ss_pred             HHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHH
T ss_conf             244544137776321589999668866762256


No 23 
>>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=32.36  E-value=30  Score=14.50  Aligned_cols=72  Identities=13%  Similarity=0.144  Sum_probs=52.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHC-----------CCCCCCCCEEECCCCCH--------HHHHHHHHHHHHH
Q ss_conf             7665442899999899767863110221010-----------12786420111266521--------1378999999999
Q gi|254780503|r  184 SIMGINEFDEIIDDIWKFSEKQGLEIDTLIH-----------EEGPAQFEINIRHGDPL--------KLADQVFLFKRTI  244 (461)
Q Consensus       184 ~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~-----------E~gpGQ~Ei~~~~~~~l--------~aaD~~~~~k~~i  244 (461)
                      +........+++.+|.+.|...+|..++-..           +..+=||||.+--.+.+        +..-+.+.||.++
T Consensus        32 ~~tSs~~p~ei~~ei~~vl~~~~i~~~~~~~~~l~c~~~~~~~~~~v~FEieVckvp~~~L~GIrfKRisGdtw~YK~ia  111 (126)
T 1v5s_A           32 FQGSSGSSGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIA  111 (126)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHH
T ss_conf             33355999999999999876039860417865899871388888537999999972788641388886048837899999


Q ss_pred             HHHHHHHCCCE
Q ss_conf             99986306603
Q gi|254780503|r  245 REAAFKHDIYA  255 (461)
Q Consensus       245 k~vA~~~G~~a  255 (461)
                      .+|.....+.-
T Consensus       112 ~~Il~~l~L~~  122 (126)
T 1v5s_A          112 SKIANELKLSG  122 (126)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHCCCCC
T ss_conf             99998724779


No 24 
>>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} (A:1-49)
Probab=30.69  E-value=27  Score=14.81  Aligned_cols=31  Identities=10%  Similarity=0.020  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHCCHHHHHCCCCCCCCCEEEC
Q ss_conf             9899767863110221010127864201112
Q gi|254780503|r  196 DDIWKFSEKQGLEIDTLIHEEGPAQFEINIR  226 (461)
Q Consensus       196 ~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~  226 (461)
                      ..|...|++.|++++++..---||-||+.+.
T Consensus         3 a~i~~~L~~~~~~v~~I~~spi~GlyeV~~~   33 (49)
T 1eej_A            3 AAIQQTLAKMGIKSSDIQPAPVAGMKTVLTN   33 (49)
T ss_dssp             HHHHHHHHHTTCCEEEEEECSSTTEEEEEET
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCEEEEEEC
T ss_conf             8999987863994324613888862899989


No 25 
>>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} (A:)
Probab=30.66  E-value=32  Score=14.31  Aligned_cols=70  Identities=10%  Similarity=0.086  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf             999989976786311022101012786420111266521137899999999999986306603311232113
Q gi|254780503|r  193 EIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQN  264 (461)
Q Consensus       193 ~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~  264 (461)
                      .++.++...|...|++|+........|.+.+.+.-.-+...  ..-.++.-...+|.++|+..++.+.....
T Consensus        17 Giva~vt~~la~~g~NI~~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~~L~~~~~~~~~~i~i~~~~~~~   86 (91)
T 1zpv_A           17 GIVAGVSGKIAELGLNIDDISQTVLDEYFTXXAVVSSDEKQ--DFTYLRNEFEAFGQTLNVKINIQSAAIFE   86 (91)
T ss_dssp             THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC--CHHHHHHHHHHHHHHHTEEEEEEEGGGTC
T ss_pred             CHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEECCCCC--CHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf             79999999999879939980518937951899999669999--99999999999999829789998089898


No 26 
>>3cny_A Inositol catabolism protein IOLE; NP_786806.1, xylose isomerase-like TIM barrel, structural genomics; 1.85A {Lactobacillus plantarum WCFS1} (A:)
Probab=28.76  E-value=23  Score=15.28  Aligned_cols=77  Identities=10%  Similarity=-0.036  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEE-----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf             4289999989976786311022101012786420111-----26652113789999999999998630660331123211
Q gi|254780503|r  189 NEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINI-----RHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQ  263 (461)
Q Consensus       189 ~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~-----~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~  263 (461)
                      ....+.+.+.++.+..+|...-..+.-..++.....-     ...+--.+-|+++-.=.-+-+.|.++|....+.+-+..
T Consensus        86 ~~~~~~~~~~i~~a~~lg~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~l~~E~~~~~  165 (301)
T 3cny_A           86 EKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAYHHHXGT  165 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCE
T ss_conf             45778888899999984036355540244420255677667788888999999999999999999865971588525550


Q ss_pred             CC
Q ss_conf             35
Q gi|254780503|r  264 NY  265 (461)
Q Consensus       264 ~~  265 (461)
                      ..
T Consensus       166 ~~  167 (301)
T 3cny_A          166 GI  167 (301)
T ss_dssp             SS
T ss_pred             EC
T ss_conf             00


No 27 
>>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A (A:)
Probab=26.48  E-value=38  Score=13.84  Aligned_cols=23  Identities=9%  Similarity=-0.103  Sum_probs=12.9

Q ss_pred             HHHHHHHHCCCEEECCCCCCCCC
Q ss_conf             99998630660331123211356
Q gi|254780503|r  244 IREAAFKHDIYATFMAKPMQNYP  266 (461)
Q Consensus       244 ik~vA~~~G~~atFmpKP~~~~~  266 (461)
                      +.+.|+++|.+.||.|-+|...+
T Consensus       108 iG~~Ak~~~iRLS~HP~qf~vL~  130 (301)
T 2j6v_A          108 LGALARAFGQRLSMHPGQYVNPG  130 (301)
T ss_dssp             HHHHHHHTTCEEEECCCTTCCTT
T ss_pred             HHHHHHHHCCEEEECCCCCCCCC
T ss_conf             99999982963886698550268


No 28 
>>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} (A:1-101,A:193-412)
Probab=24.70  E-value=41  Score=13.63  Aligned_cols=87  Identities=22%  Similarity=0.321  Sum_probs=52.4

Q ss_pred             CCCCCEEEEECCCCCC--CCCCC----CCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHC------CHH
Q ss_conf             2244179982167888--87778----778888776678777766544-----289999989976786311------022
Q gi|254780503|r  148 APEIEFYLIAKNEDPD--YPLQP----PKGRSGRSILGGQSYSIMGIN-----EFDEIIDDIWKFSEKQGL------EID  210 (461)
Q Consensus       148 g~E~EF~L~~~~~~~~--~~~~~----~~~~~~~~~~~~~~y~~~~~~-----~~~~~l~~i~~~l~~~Gi------~ve  210 (461)
                      |.|++++.|..+.+-.  ...+.    ..+..+..+.+...|+=.++.     ..+.+++.+.+.|.+.|+      .++
T Consensus       103 G~E~Sv~a~~dG~~~~~l~~~qdhKr~~dgD~GPnTGgmGa~~P~p~~~~~~~~~~~Ii~~t~~al~~eG~~y~Gvl~~~  182 (321)
T 1vkz_A          103 GNELSAXAVVNGRNFVILPFVRDYKRLXDGDRGPNTGGXGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLG  182 (321)
T ss_dssp             SEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred             CCCCEEEEEECCCEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHHHHHHHHHCCCEEEEEEEEE
T ss_conf             65210599962998998965345412205887654344454445786520000001033686667774396079874027


Q ss_pred             HHHCCCCCCCCCEEECCCCCHHHH
Q ss_conf             101012786420111266521137
Q gi|254780503|r  211 TLIHEEGPAQFEINIRHGDPLKLA  234 (461)
Q Consensus       211 ~~~~E~gpGQ~Ei~~~~~~~l~aa  234 (461)
                      -+.++.||=-.|+|.++.|+....
T Consensus       183 lmlt~~GpkVIE~N~R~Gdpe~q~  206 (321)
T 1vkz_A          183 LXLHDGDPYILEYNVRLGDPETEV  206 (321)
T ss_dssp             EEEETTEEEEEEEESSCCTTHHHH
T ss_pred             EEEECCCEEEEEEEECCCCCCCCC
T ss_conf             797189706998640125784400


No 29 
>>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:156-192,A:287-329)
Probab=22.93  E-value=44  Score=13.41  Aligned_cols=47  Identities=11%  Similarity=0.097  Sum_probs=38.2

Q ss_pred             HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             9998659898873558999999999999999986389978998763179
Q gi|254780503|r  413 VTLLENTSHFKDIFGSQFIDMYANLKRNEFETFMQVISPWEREFLLLNV  461 (461)
Q Consensus       413 l~~l~~d~~l~~~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~~~  461 (461)
                      ..+-++|+.+++.|..-++...+..-...++....  +|.+.+||+.-|
T Consensus        32 ~~~~~~s~evR~yfsPlVm~aVl~Rya~hLe~~R~--HPLdiRRYyrKv   78 (80)
T 3eua_A           32 AKAHEKDDSVKGYLAPLVLNRVLRSYADELAEERN--HPLSHRRYXWKV   78 (80)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCTTCCSSTTTS
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC
T ss_conf             99765499951558899999999999999999968--499989997631


No 30 
>>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P (A:288-339,A:498-529)
Probab=22.74  E-value=44  Score=13.39  Aligned_cols=34  Identities=29%  Similarity=0.480  Sum_probs=22.5

Q ss_pred             CCHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHHH
Q ss_conf             5589999999999999999----863899789987631
Q gi|254780503|r  426 FGSQFIDMYANLKRNEFET----FMQVISPWEREFLLL  459 (461)
Q Consensus       426 lg~~~v~~~~~~k~~E~~~----~~~~vt~wE~~~yl~  459 (461)
                      +|+.=++...++|+.|++.    |...+.-|..++|..
T Consensus         3 lG~kE~~~Ll~lKk~e~e~rg~~fDg~~y~WD~ryY~~   40 (84)
T 2o36_A            3 LGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMN   40 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCSSCCTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             99999999999999887522798767767122889986


No 31 
>>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P (A:304-356,A:513-545)
Probab=22.07  E-value=46  Score=13.30  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=24.7

Q ss_pred             CCHHHHHHHHHHHHHHHH----HHHCCCCHHHHHHHHH
Q ss_conf             558999999999999999----9863899789987631
Q gi|254780503|r  426 FGSQFIDMYANLKRNEFE----TFMQVISPWEREFLLL  459 (461)
Q Consensus       426 lg~~~v~~~~~~k~~E~~----~~~~~vt~wE~~~yl~  459 (461)
                      +|+.=++...++|+.|.+    .|......|..++|..
T Consensus         3 lg~kE~~~Ll~lKk~d~e~rg~~~Dg~~y~WD~rYY~~   40 (86)
T 2o3e_A            3 LGEAEREFILSLKKKECEERGFEYDGKINAWDLHYYMT   40 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             36999999999987766522777656667222888887


No 32 
>>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} (A:1-172,A:268-292)
Probab=21.03  E-value=48  Score=13.16  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHCC-CEEE-CCCCCCCCCCHHHHH
Q ss_conf             999999999999863066-0331-123211356626899
Q gi|254780503|r  236 QVFLFKRTIREAAFKHDI-YATF-MAKPMQNYPGSAMHI  272 (461)
Q Consensus       236 ~~~~~k~~ik~vA~~~G~-~atF-mpKP~~~~~GsG~H~  272 (461)
                      .-..++.+++|++.-.|+ .+.| |++|+.=..++||.+
T Consensus       156 ~~~~~~~~~HEi~HaLG~~~~~~~~~~~~~~~~~~~~~~  194 (197)
T 1lml_A          156 DQLVTRVVTHEMAHALGFYQADFSKAEVMPWGQNAGCAF  194 (197)
T ss_dssp             CHHHHHHHHHHHHHHTTSCEECGGGCCCCCTTTTCCHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             068999999999876418075254345660204578762


No 33 
>>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} (A:1-49)
Probab=20.54  E-value=32  Score=14.29  Aligned_cols=30  Identities=3%  Similarity=-0.209  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHCCHHHHHCCCCCCCCCEEEC
Q ss_conf             899767863110221010127864201112
Q gi|254780503|r  197 DIWKFSEKQGLEIDTLIHEEGPAQFEINIR  226 (461)
Q Consensus       197 ~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~  226 (461)
                      .|...|+..|++++++..---||-||+.+.
T Consensus         4 ~i~~~L~~~~~~v~~I~~spi~GlyeV~~~   33 (49)
T 1t3b_A            4 AIKRKLQSFNISNIVIKSSPISGIKTAVTD   33 (49)
T ss_dssp             TTHHHHHTTTCCSCCCCBCSSTTEECCEET
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCEEEEEEC
T ss_conf             999999865997036705898983999989


No 34 
>>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structure initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP} (A:)
Probab=20.39  E-value=49  Score=13.08  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=43.1

Q ss_pred             HHHHHHHHHC-CCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             8999998610-276402322441799821678888777877888877--6678777766544289999989976786311
Q gi|254780503|r  131 LKRVLNFYAQ-NELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRS--ILGGQSYSIMGINEFDEIIDDIWKFSEKQGL  207 (461)
Q Consensus       131 Lkr~i~~l~~-~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi  207 (461)
                      +.+.++-+.+ .|+++....+-+..+.....................  ......+.....  ..+=++++++.|.+.|+
T Consensus        36 ~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~di~~~~~~l~~~G~  113 (148)
T 2r6u_A           36 GDRARAFYRDAFGWAIAEIPDMDYSMVTTGPVGESGMPDEPGYINGGMMQRGEVTTPVVTV--DVESIESALERIESLGG  113 (148)
T ss_dssp             HHHHHHHHHHHHCCEEEEETTTTEEEEECSCBCTTSSBCSSSCBCEEEEESSSSCSCEEEE--ECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEE--ECCCCHHEEEECCCCCC
T ss_conf             9999999998529788885589859999768772445520243322456678605889986--20421010000112550


Q ss_pred             CHHHHHCCCCCCCCCEEECC
Q ss_conf             02210101278642011126
Q gi|254780503|r  208 EIDTLIHEEGPAQFEINIRH  227 (461)
Q Consensus       208 ~ve~~~~E~gpGQ~Ei~~~~  227 (461)
                      .+..--.+...|+..+.+.=
T Consensus       114 ~~~~~~~~~~~g~~~~~~~D  133 (148)
T 2r6u_A          114 KTVTGRTPVGNMGFAAYFTD  133 (148)
T ss_dssp             EEEEEEEEETTTEEEEEEEC
T ss_pred             EEEECCEECCCCEEEEEEEC
T ss_conf             78666325599879999999


Done!