HHSEARCH alignment of GI: 254780503 and SCOP domain: d2bvca2

Alignment
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=0  Score=712.21  Aligned_cols=333  Identities=29%  Similarity=0.464  Sum_probs=296.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCC--EEECCCCCEEEEECCCCCCC-------------------CCC-CCCCCCC-CCCCCCC
Q ss_conf             42577789999986102764--02322441799821678888-------------------777-8778888-7766787
Q gi|254780503|r  125 YTPRNVLKRVLNFYAQNELK--PIIAPEIEFYLIAKNEDPDY-------------------PLQ-PPKGRSG-RSILGGQ  181 (461)
Q Consensus       125 ~~PR~iLkr~i~~l~~~G~~--~~~g~E~EF~L~~~~~~~~~-------------------~~~-~~~~~~~-~~~~~~~  181 (461)
                      .|||++|||++++++++||.  +.+|+|+|||||++......                   ... ...+..+ .+...++
T Consensus         2 ~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (374)
T d2bvca2           2 RDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGG   81 (374)
T ss_dssp             TCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88699999999999977998703577265899971454455667762013630002467876567888877866565665


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             777665442899999899767863110221010127-8642011126652113789999999999998630660331123
Q gi|254780503|r  182 SYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEG-PAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAK  260 (461)
Q Consensus       182 ~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK  260 (461)
                      +|+....+..++|+++|++.|+.+||+++++|+|+| ||||||++.|+++|+|||+++++|++||+||++||++||||||
T Consensus        82 ~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmpK  161 (374)
T d2bvca2          82 YFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPK  161 (374)
T ss_dssp             SCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             00020002268999999987874697637632156668258870676306689999999999999999863974777643


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf             211356626899987631368742335886--552156665457776422321222076610134420465575433424
Q gi|254780503|r  261 PMQNYPGSAMHIHQSVLDIKSNQNIFSNPD--GSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWG  338 (461)
Q Consensus       261 P~~~~~GsG~H~h~SL~d~~~g~n~f~~~~--~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG  338 (461)
                      |+.+.+|||||+|+|||+  +++|+|++++  +++|+++++||||||+|++++++|+|||+||||||+|++|||++++||
T Consensus       162 P~~~~~Gsg~H~h~Sl~~--~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg  239 (374)
T d2bvca2         162 PLFGDNGSGMHCHQSLWK--DGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYS  239 (374)
T ss_dssp             SSTTSCCCCEEEEEEEEE--TTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEE
T ss_pred             ECCCCCCCCEEEEEEECC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEC
T ss_conf             156788766007997415--898865556665556799999999998520988898737874265348987564477404


Q ss_pred             CCCCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CHHCCCCCH
Q ss_conf             3345003650223--8865203530358779989999999999999898468887433453000-------311047898
Q gi|254780503|r  339 YDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ-------EAINLPRGL  409 (461)
Q Consensus       339 ~~NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~-------~~~~LP~sL  409 (461)
                      .+||+++||||..  +++++|||+|++|++|||||++||||+|||+||+++++|++|+.+|+|.       +.++||+||
T Consensus       240 ~~nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl  319 (374)
T d2bvca2         240 QRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQL  319 (374)
T ss_dssp             ETCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSH
T ss_pred             CCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCH
T ss_conf             67665531102446897562688527883310789999999986665641234468777851329965765813250179


Q ss_pred             HHHHHHHHCCHHHH---HHCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999986598988---7355899999999999-99999863899789987631
Q gi|254780503|r  410 LEAVTLLENTSHFK---DIFGSQFIDMYANLKR-NEFETFMQVISPWEREFLLL  459 (461)
Q Consensus       410 ~eAl~~l~~d~~l~---~~lg~~~v~~~~~~k~-~E~~~~~~~vt~wE~~~yl~  459 (461)
                      .|||++|++|+.++   ++||++||++|+++|| +||++|+++|||||+++||+
T Consensus       320 ~eAl~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~  373 (374)
T d2bvca2         320 SDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYD  373 (374)
T ss_dssp             HHHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTT
T ss_pred             HHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
T ss_conf             999999975978787656378999999999999999999968999999960489


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]