RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780503|ref|YP_003064916.1| putative glutamine synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 350 bits (898), Expect = 5e-97
Identities = 121/471 (25%), Positives = 191/471 (40%), Gaps = 43/471 (9%)
Query: 18 EQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHS 77
E L ++ ++ V+ D G + +P+ + + +I G
Sbjct: 3 EHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEF-FEEGKMFDGSSIGG----- 56
Query: 78 PYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKE-VTYTPRNVLKRVLN 136
+ + D+ L PD ST I P+ D T I CD+++ + PR++ KR +
Sbjct: 57 ---WKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAED 113
Query: 137 FYAQNELKP--IIAPEIEFYLIAKNED-----------------PDYPLQPPKGRSG-RS 176
+ + + PE EF+L + + G G R
Sbjct: 114 YLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRP 173
Query: 177 ILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPA-QFEINIRHGDPLKLAD 235
+ G + + ++ +I ++ E+ GL ++ HE A Q E+ R K AD
Sbjct: 174 GVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKAD 233
Query: 236 QVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETD 295
++ ++K + A + ATFM KPM GS MH H S+ +N + ++
Sbjct: 234 EIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTN-LFSGDKYAGLSE 292
Query: 296 NFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIP-FSDAK 354
Y+IGG+ K+ + P NSY+RLV PV A+ NR+ + RIP + K
Sbjct: 293 QALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPK 352
Query: 355 TKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA-------NQEAINLPR 407
+RIE R P NPYL AA L GL GI KI P P K+ +E +
Sbjct: 353 ARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAG 412
Query: 408 GLLEAVTLLENTSHFK---DIFGSQFIDMYANLKRNEFETFMQVISPWERE 455
L EA+ L+ F +F + ID Y L+R E + P E E
Sbjct: 413 SLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFE 463
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 1hto_A* 1htq_A*
Length = 486
Score = 266 bits (681), Expect = 6e-72
Identities = 124/479 (25%), Positives = 189/479 (39%), Gaps = 47/479 (9%)
Query: 15 KNWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGES 74
K + K KD ++E V+ DL GI + +P+S F +++ +
Sbjct: 12 KTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDK--------SVFDDGL-AFD 62
Query: 75 LHSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVD-YNGKEVTYTPRNVLKR 133
S F + + D+ L PD T I P+ T I V D + + + PRN+ ++
Sbjct: 63 GSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARK 122
Query: 134 VLNFYAQN--ELKPIIAPEIEFYLI---------------------AKNEDPDYPLQPPK 170
N+ E EFY+ N
Sbjct: 123 AENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSP 182
Query: 171 GRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGP-AQFEINIRHGD 229
R + G + + +++ ++ D + G ++ HE G Q EIN +
Sbjct: 183 NRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNS 242
Query: 230 PLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNP 289
L AD + L+K I+ A+++ TFM KP+ GS MH HQS+ +
Sbjct: 243 LLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDETG 302
Query: 290 DGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIP 349
+D R++IGGL + P+ L P NSY+RLV P+N + NR+ RIP
Sbjct: 303 YAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNRSACVRIP 362
Query: 350 --FSDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA-------NQ 400
S+ K KR+E R P S NPYL +A L GL GI KIEP P K
Sbjct: 363 ITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAA 422
Query: 401 EAINLPRGLLEAVTLLENTSHF---KDIFGSQFIDMYANLKR-NEFETFMQVISPWERE 455
P L + + LE + +F + I+ + + KR NE E P+E
Sbjct: 423 SIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFA 481
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 250 bits (640), Expect = 4e-67
Identities = 75/448 (16%), Positives = 117/448 (26%), Gaps = 37/448 (8%)
Query: 18 EQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHS 77
E L ++ V D AG R K +P+ F I+ E
Sbjct: 3 EHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFF--------EKVIHARGY-LEDGEV 53
Query: 78 PYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNF 137
D+ L P+LST ++CD G +PR + + L
Sbjct: 54 NAGAAGAAASDIVLMPELSTXXXXXXXXXXXXXVICD----GGXXXXXSPRYIARAALAQ 109
Query: 138 YAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDD 197
+ + S+ + +
Sbjct: 110 LQAAGAAAGLLSAFIADFCIFGVPEVINSKTI------------SFPASTTAAAADQPQE 157
Query: 198 IWKFSEKQGLEIDTLIHEEGPAQFEINIRH-GDPLKLADQVFLFKRTIREAAFKHDIYAT 256
G EI AD F + ++E A +++
Sbjct: 158 AAAG-GAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAXXX 216
Query: 257 FMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSE-TDNFRYFIGGLQKYIPNALVML 315
H V + N F+ G+ T ++ G
Sbjct: 217 XXXXXXXXXXXXXSHSIWDVG--AAGTNAFAGASGARATLTGAKWLAGXXXXXXXXXXXX 274
Query: 316 APYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFSDA-KTKRIENRLPSSDTNPYLVLA 374
AWG A I K +IEN+ ++ NPYLVLA
Sbjct: 275 XXXXXXXXXXXXXXXXXXXTAWGXXXXXCALNIXXXXXXKGAQIENKAGAAAANPYLVLA 334
Query: 375 ASLACGLLGILQKIEPTPPTMK-SANQEAINLPRGLLEAVTLLENTSHF-KDIFGSQFID 432
A++A GL GI +P + +A+ LE + K G FI
Sbjct: 335 ATVAAGLDGIQSAGAAAGAAAADXXXXXPSEIPGKMEDALAALEQDAECLKAGLGEAFIR 394
Query: 433 MYANLKRNEFETFMQVISPWER-EFLLL 459
+ E E + E +FL
Sbjct: 395 AAVAAAKYELENE---ETDAEGNKFLEY 419
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
genomics, structural genomics consortium, SGC; HET: ADP;
2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Length = 384
Score = 176 bits (448), Expect = 7e-45
Identities = 61/303 (20%), Positives = 114/303 (37%), Gaps = 19/303 (6%)
Query: 86 DGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKP 145
+ D+ L P + P+ DP ++C+V YN + R+ KR+++ +
Sbjct: 93 NSDMYLVPA--AMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVSNQHPWF 150
Query: 146 IIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQ 205
+ E D P G G D I++ ++
Sbjct: 151 GMEQEYTLM----GTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRD-IVEAHYRACLYA 205
Query: 206 GLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQ-N 264
G++I E PAQ+E I + + + D +++ + + + ATF KP+ N
Sbjct: 206 GVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGN 265
Query: 265 YPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRR 324
+ G+ H + S ++ + + E + ++ Y P + ++ RR
Sbjct: 266 WNGAGCHTNFSTKAMREENGLKYIEEAIE-KLSKRHQYHIRAYDPKGGL------DNARR 318
Query: 325 LVLDMGCPVNNA--WGYDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLAASLACG 380
L N G NR+ + RIP + K E+R PS++ +P+ V A +
Sbjct: 319 LTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTC 378
Query: 381 LLG 383
LL
Sbjct: 379 LLN 381
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 174 bits (441), Expect = 4e-44
Identities = 55/308 (17%), Positives = 110/308 (35%), Gaps = 20/308 (6%)
Query: 81 FHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQ 140
D ++ L P + P+ ++CD G+ + R ++ +
Sbjct: 62 QAPGEDSEVILYPQ--AIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEV 119
Query: 141 NELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWK 200
+P E E+ L+ +D ++PL P G + +I+D +K
Sbjct: 120 AAEEPWYGIEQEYTLL--QKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYK 177
Query: 201 FSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAK 260
G+ I + E P Q+E + + DQV++ + + + TF K
Sbjct: 178 ACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPK 237
Query: 261 PMQ-NYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYG 319
P+ ++ G+ H + S ++ + + I L+ + A
Sbjct: 238 PIPGDWNGAGAHTNYSTESMRKEGGY---------EVIKAAIEKLKLRHKEH--IAAYGE 286
Query: 320 NSYRRLVLDMGCPVNN--AWGYDNRTTAFRIPFSDAKTK--RIENRLPSSDTNPYLVLAA 375
+ RRL N +WG NR + R+ + E+R P+S+ +PY+V +
Sbjct: 287 GNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSM 346
Query: 376 SLACGLLG 383
++
Sbjct: 347 IAETTIVW 354
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 172 bits (436), Expect = 2e-43
Identities = 63/371 (16%), Positives = 124/371 (33%), Gaps = 29/371 (7%)
Query: 32 VECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRL 91
E + D G R K K I++ +P + S D D+ L
Sbjct: 26 AEYVWIDGTGNLRSKGRTLKKRITS-IDQLPEWNFDG--------SSTNQAPGHDSDIYL 76
Query: 92 SPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEI 151
P P+ ++ + +G + R+ ++ + E+ + E
Sbjct: 77 KPV--AYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKDEEIWFGLEQEY 134
Query: 152 EFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDT 211
+ + D P G + D +I+ ++ GLEI
Sbjct: 135 TLF----DMYDDVYGWPKGGYPAPQGPYYCGVGAGKVYARD-MIEAHYRACLYAGLEISG 189
Query: 212 LIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQN-YPGSAM 270
+ E P+Q+E + + + DQ+++ + + A + I +F KP++ + G+
Sbjct: 190 INAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGC 249
Query: 271 HIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMG 330
H + S +++ I L K + + + +
Sbjct: 250 HANVSTKEMRQPGGTK---------YIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETA 300
Query: 331 CPVNNAWGYDNRTTAFRIPFSDAKTK--RIENRLPSSDTNPYLVLAASLACGLLGILQKI 388
+ G NR ++ RIP S AK E+R P+S+ +PYLV I
Sbjct: 301 SMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAI-DNA 359
Query: 389 EPTPPTMKSAN 399
+ T + ++
Sbjct: 360 DMTKEFERESS 370
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 60.3 bits (146), Expect = 8e-10
Identities = 88/551 (15%), Positives = 149/551 (27%), Gaps = 226/551 (41%)
Query: 54 ISNIPLTVPSAIYRHTIS-GESLHSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIV 112
S PLT+ H + + ++ + L + D
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQL--QEQFNK---ILPEPTEGFAADDEPTTPA 58
Query: 113 CDVVDYNG---KEVTYTPRN----VLKRVLN-----FYAQNELKPIIA---PEIEFYLIA 157
V + G V + VL L + N++ + A E + L+
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 158 KNE------------DPDYPLQPPKG-----RSGRS----ILGGQSYSIMGINE--FDE- 193
E + + G + I GGQ G + F+E
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-----GNTDDYFEEL 173
Query: 194 ---------IIDDIWKFS--------------EK---QGLEIDTLIH--EEGP------- 218
++ D+ KFS EK QGL I + P
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 219 -------------AQFEINIR--HGDPLKLADQVFLFKRTIREAAFKHD---IYATFMA- 259
A + + + P +L K A H + A +A
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRS---YLK-----GATGHSQGLVTAVAIAE 285
Query: 260 ------------KPM-----------QNYPGSAMHIHQSVL-DIKSNQNIFSNP-----D 290
K + + YP ++ + S+L D N +P +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISN 343
Query: 291 GSETDNFRYFIGGLQKYI-------PN------ALVMLAPYGNSYRRLVLDMGCPVN--- 334
++ +Q Y+ P +LV N + LV+ G P +
Sbjct: 344 LTQEQ--------VQDYVNKTNSHLPAGKQVEISLV------NGAKNLVV-SGPPQSLYG 388
Query: 335 -NAW--------GYDNRTTAFRIPFSDAKTKRIENR-LPSSDT--NPYLVLAASLACGLL 382
N G D RIPFS+ K + NR LP + + LV A+ L
Sbjct: 389 LNLTLRKAKAPSGLDQS----RIPFSERKL-KFSNRFLPVASPFHSHLLVPASDL----- 438
Query: 383 GILQKIEPTPPTMKSANQEAI----------------NL-PRGLLEAVT---------LL 416
I + + + A I ++ R +++ +
Sbjct: 439 -INKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSISER-IVDCIIRLPVKWETTTQ 495
Query: 417 ENTSHFKDIFG 427
+H D FG
Sbjct: 496 FKATHILD-FG 505
Score = 56.1 bits (135), Expect = 2e-08
Identities = 41/253 (16%), Positives = 66/253 (26%), Gaps = 112/253 (44%)
Query: 7 SPM-NVRGV------KNWEQAAKWL-KDNRIEDVECI----TPD---LAGIP-------- 43
SPM ++ + + L ++ I ++G P
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQV----EISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 44 --RGKMMPSSKFISNIPLTVPSAIYRHT---ISGESLHSPYL------------------ 80
R PS S IP + + + ++ HS L
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVSF 450
Query: 81 ---------FHNERDG-DLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNV 130
+ DG DLR LS SI I+ V +
Sbjct: 451 NAKDIQIPVYDT-FDGSDLR---VLSG-SISE---RIVDCIIRLPVKW------------ 490
Query: 131 LKRVLNFYAQNELKPIIAPEIEF---------YLIAKNEDPDYPLQPPKGRSGRSILGGQ 181
+ F A + I ++F L +N+D G R I+ G
Sbjct: 491 -ETTTQFKATH----I----LDFGPGGASGLGVLTHRNKD---------GTGVRVIVAGT 532
Query: 182 SYSIMGINEFDEI 194
+ IN D+
Sbjct: 533 ----LDINPDDDY 541
Score = 46.1 bits (109), Expect = 2e-05
Identities = 63/386 (16%), Positives = 116/386 (30%), Gaps = 167/386 (43%)
Query: 22 KWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVP----SAIYRHTISGESLH- 76
+WL++ P P ++ +IP++ P + + ++ + L
Sbjct: 217 EWLEN----------PS----NT----PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 77 SPYLFHNERDGDLRLSPDLSTLS--------IVPWEMDPTAQIVCDVVDYNGKEVTYTPR 128
+P G+LR S L +V TA + D ++
Sbjct: 259 TP--------GELR-----SYLKGATGHSQGLV------TAVAIA-ETD------SWE-- 290
Query: 129 NVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQ--PPKGRSGRSILGGQ---SY 183
+F+ + K A + F++ + + YP PP S+ + S
Sbjct: 291 -------SFF-VSVRK---AITVLFFIGVRCYE-AYPNTSLPPSILE-DSLENNEGVPSP 337
Query: 184 --SIMGI--NEFDEIIDDIWKF--SEKQGLEIDTLIHEEGPAQFEINIRHGDPLKL---- 233
SI + + + ++ + KQ +EI +L++ G ++ G P L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQ-VEI-SLVN--GAKNLVVS---GPPQSLYGLN 390
Query: 234 -----------ADQVFLFKR---TIREAAFKHDIYATFMAKPMQNYPGSAMHIH------ 273
DQ R + R+ F + F+ P+ S H H
Sbjct: 391 LTLRKAKAPSGLDQ----SRIPFSERKLKFSN----RFL--PV----ASPFHSHLLVPAS 436
Query: 274 QSVLD--------IKSNQ---NIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSY 322
+ + ++ DGS D L+ +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGS--D--------LRVLSGSIS---------- 476
Query: 323 RRLVLDMGC--PVNNAWGYDNRTTAF 346
R+V D PV W TT F
Sbjct: 477 ERIV-DCIIRLPVK--WE---TTTQF 496
Score = 27.2 bits (60), Expect = 7.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 420 SHFKDIFGSQFIDMYAN 436
+HFKD +G +D+ N
Sbjct: 1651 NHFKDTYGFSILDIVIN 1667
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.60
Identities = 6/24 (25%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 356 KRIEN--RLPSSDTNPYLVLAASL 377
K+++ +L + D+ P L + A++
Sbjct: 23 KKLQASLKLYADDSAPALAIKATM 46
Score = 29.6 bits (65), Expect = 1.6
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 128 RNVLKRV---LNFYAQNELKPIIA 148
+ LK++ L YA + P +A
Sbjct: 19 KQALKKLQASLKLYADDS-APALA 41
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains,
glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A
{Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Length = 417
Score = 28.7 bits (63), Expect = 2.7
Identities = 14/134 (10%), Positives = 29/134 (21%), Gaps = 13/134 (9%)
Query: 229 DPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSN 288
+ + D + + + K IY+T YP S + D +
Sbjct: 71 NATRFPDGIDGLAKKVHALGLKLGIYSTAGTATCAGYPASLGYEDVDAADFADWGVDYLK 130
Query: 289 PDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRI 348
D + + + + C +
Sbjct: 131 YDN-------------CNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWST 177
Query: 349 PFSDAKTKRIENRL 362
S + + N L
Sbjct: 178 SKSAERFGAMRNAL 191
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics,
PSI-2, protein structure initiative; 1.81A
{Chlorobaculum tepidum} PDB: 2kcu_A
Length = 158
Score = 28.5 bits (63), Expect = 3.3
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 24/135 (17%)
Query: 105 MDPTAQIVCDVVDYNGKEVTYTPRNV------------LKRVLNFYAQNELKPIIAPEIE 152
MD Q VC++ + +L A P P
Sbjct: 1 MDFECQFVCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKSPSGPP-FA 59
Query: 153 FYLIAKNEDPDY--------PLQPPKGRSGRSILGGQSYSIMGINEFDEI---IDDIWKF 201
Y + ++ G++ S + I + EI D + K+
Sbjct: 60 RYFGMSAGTFEVEFGFPVEGGVEGSGRVVTGLTPSGKAASSLYIGPYGEIEAVYDALMKW 119
Query: 202 SEKQGLEIDTLIHEE 216
+ G ++ +E
Sbjct: 120 VDDNGFDLSGEAYEI 134
>2ns2_A Spindlin-1; beta barrel, repeat domains, cell cycle; 2.20A {Homo
sapiens}
Length = 242
Score = 27.5 bits (61), Expect = 7.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 80 LFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDY-NGKEVTYTPRNVLKRVLNFY 138
L + ++GDLR+ PD + P + +VVD GK+V Y + KR
Sbjct: 161 LLDDYKEGDLRIMPD-------SNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVI 213
Query: 139 AQNELKP 145
Q E KP
Sbjct: 214 HQVEAKP 220
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,132,649
Number of extensions: 198390
Number of successful extensions: 559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 20
Length of query: 461
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 365
Effective length of database: 3,365,806
Effective search space: 1228519190
Effective search space used: 1228519190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)