RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780503|ref|YP_003064916.1| putative glutamine synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 368
Score = 231 bits (589), Expect = 1e-61
Identities = 99/361 (27%), Positives = 151/361 (41%), Gaps = 33/361 (9%)
Query: 127 PRNVLKRVLNFYAQNELKP--IIAPEIEFYLI------AKNEDPDYPLQPPKG------- 171
PR++ KR ++ + + PE EF+L A + +G
Sbjct: 4 PRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTK 63
Query: 172 -----RSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEE-GPAQFEINI 225
+ R + G + + ++ +I ++ E+ GL ++ HE Q E+
Sbjct: 64 YEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVAT 123
Query: 226 RHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNI 285
R K AD++ ++K + A + ATFM KPM GS MH H S+ +N
Sbjct: 124 RFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTN-LF 182
Query: 286 FSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTA 345
+ ++ Y+IGG+ K+ + P NSY+RLV PV A+ NR+ +
Sbjct: 183 SGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSAS 242
Query: 346 FRIP-FSDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA------ 398
RIP + K +RIE R P NPYL AA L GL GI KI P P K+
Sbjct: 243 IRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPE 302
Query: 399 -NQEAINLPRGLLEAVTLLENTSHFK---DIFGSQFIDMYANLKRNEFETFMQVISPWER 454
+E + L EA+ L+ F +F + ID Y L+R E + P E
Sbjct: 303 EAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEF 362
Query: 455 E 455
E
Sbjct: 363 E 363
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 374
Score = 221 bits (564), Expect = 8e-59
Identities = 98/366 (26%), Positives = 147/366 (40%), Gaps = 37/366 (10%)
Query: 127 PRNVLKRVLNFYAQNELKP--IIAPEIEFYLI---------------------AKNEDPD 163
PRN+ ++ N+ + E EFY+ N
Sbjct: 4 PRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAA 63
Query: 164 YPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEG-PAQFE 222
R + G + + +++ ++ D + G ++ HE G Q E
Sbjct: 64 TEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAE 123
Query: 223 INIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSN 282
IN + L AD + L+K I+ A+++ TFM KP+ GS MH HQS+ +
Sbjct: 124 INYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAP 183
Query: 283 QNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNR 342
+D R++IGGL + P+ L P NSY+RLV P+N + NR
Sbjct: 184 LMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNR 243
Query: 343 TTAFRIP--FSDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ 400
+ RIP S+ K KR+E R P S NPYL +A L GL GI KIEP P K +
Sbjct: 244 SACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYE 303
Query: 401 -------EAINLPRGLLEAVTLLENTSHF---KDIFGSQFIDMYANLKR-NEFETFMQVI 449
P L + + LE + +F + I+ + + KR NE E
Sbjct: 304 LPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRP 363
Query: 450 SPWERE 455
P+E
Sbjct: 364 HPYEFA 369
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 100
Score = 67.7 bits (165), Expect = 2e-12
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 18 EQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHS 77
+ K KD ++E V+ DL GI + +P+S F ++ S
Sbjct: 3 DDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSV---------FDDGLAFDGSS 53
Query: 78 PYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVD 117
F + + D+ L PD T I P+ T I V D
Sbjct: 54 IRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHD 93
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 100
Score = 66.1 bits (161), Expect = 6e-12
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 18 EQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHS 77
E L ++ ++ V+ D G + +P+ + + + S
Sbjct: 3 EHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAE---------FFEEGKMFDGSS 53
Query: 78 PYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVD 117
+ + D+ L PD ST I P+ D T I CD+++
Sbjct: 54 IGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILE 93
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 266
Score = 28.7 bits (64), Expect = 1.1
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 90 RLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEV---------TYTPRNVLKRVLNFYAQ 140
L+ D + + IVC V D NG+ ++R L F+ +
Sbjct: 205 NLTNDFAGCAPKTIASLKPISIVCKVSDANGRPAVKLSDNPQKATGDPAEVERYLKFFGE 264
Query: 141 NE 142
+
Sbjct: 265 ED 266
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.4 bits (58), Expect = 4.9
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 326 VLDMGCPVNNAWGYDNRTTAFRIPFSDAKTKRIENRLPSSDTNP--YLVLAASLACGL-- 381
V MG V+N+ R + ++ ++P + P AA++
Sbjct: 543 VFHMGSCVDNS-----RAVDLLMAMANDLGVDT-PKVPFVASAPEAMSGKAAAIGTWWVS 596
Query: 382 LGILQKIEPTPPTMKSANQEAINLPRGLLEAVTLLENTSHFKDIFGSQFI 431
LG+ + PP S ++L T D++G FI
Sbjct: 597 LGVPTHVGTMPPVEGSDL------------IYSIL--TQIASDVYGGYFI 632
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 817
Score = 26.0 bits (56), Expect = 7.0
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 102 PWEMDPTAQIVCDV----VDYNGKEVTYTPRNVLKRVLNFYAQNELKP-IIAPEIEFYLI 156
P E +I+ + + E ++K N+ +E + +A E Y +
Sbjct: 610 PGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYAL 669
Query: 157 AKNEDPDYPLQPPKGR 172
D + L KG+
Sbjct: 670 EDLYDANGVLIAKKGQ 685
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,787,993
Number of extensions: 86438
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 10
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)