Query         gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 492
No_of_seqs    158 out of 1448
Neff          6.0 
Searched_HMMs 39220
Date          Sun May 29 23:25:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780504.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00871 zwf glucose-6-phosph 100.0       0       0 1547.3  40.8  480    9-491     1-498 (498)
  2 COG0364 Zwf Glucose-6-phosphat 100.0       0       0 1365.9  49.2  478    7-491     4-483 (483)
  3 PRK05722 glucose-6-phosphate 1 100.0       0       0 1354.9  54.3  482    7-491     6-495 (495)
  4 PRK12853 glucose-6-phosphate 1 100.0       0       0 1352.6  54.3  481    5-492     3-485 (486)
  5 PTZ00309 glucose-6-phosphate d 100.0       0       0 1329.4  52.1  470    9-492    67-554 (556)
  6 PRK12854 glucose-6-phosphate 1 100.0       0       0 1312.4  50.6  463    5-492     6-475 (475)
  7 KOG0563 consensus              100.0       0       0 1176.8  43.1  472    9-490    16-498 (499)
  8 pfam02781 G6PD_C Glucose-6-pho 100.0       0       0  862.0  29.8  292  192-491     1-294 (294)
  9 pfam00479 G6PD_N Glucose-6-pho 100.0       0       0  456.2  20.0  175   14-190     1-183 (183)
 10 pfam01408 GFO_IDH_MocA Oxidore  96.9   0.035   9E-07   35.6  11.3   49  117-170    64-112 (120)
 11 COG0673 MviM Predicted dehydro  95.6    0.24   6E-06   29.7  12.2  186   10-251     3-194 (342)
 12 PRK10206 putative dehydrogenas  94.5    0.47 1.2E-05   27.5  21.5   69  116-189    66-139 (345)
 13 PRK11579 putative oxidoreducta  94.2    0.17 4.3E-06   30.7   6.1  109   12-170     6-114 (346)
 14 TIGR03649 ergot_EASG ergot alk  79.7     4.9 0.00012   20.2   7.7   78   12-126     1-78  (285)
 15 KOG0890 consensus               79.5     4.7 0.00012   20.3   5.0   84  183-277   821-906 (2382)
 16 KOG2741 consensus               79.3       5 0.00013   20.1  10.5  184   22-259    16-209 (351)
 17 KOG0946 consensus               74.3     3.7 9.5E-05   21.1   3.3  113  158-294   231-351 (970)
 18 PRK05989 cobN cobaltochelatase  65.6      10 0.00026   17.9   4.0   99  186-296   912-1031(1251)
 19 pfam02514 CobN-Mg_chel CobN/Ma  62.1       9 0.00023   18.3   3.2   97  186-296   739-857 (1064)
 20 pfam02446 Glyco_hydro_77 4-alp  55.4     3.2 8.2E-05   21.5  -0.1   23  164-186   270-292 (494)
 21 COG5649 Uncharacterized conser  54.3      16  0.0004   16.6   4.7   30  325-357    47-81  (132)
 22 PRK12321 cobN cobaltochelatase  53.2      10 0.00027   17.9   2.3  129  151-296   726-887 (1101)
 23 pfam05542 DUF760 Protein of un  52.9     7.7  0.0002   18.8   1.5   16  237-252   121-136 (328)
 24 pfam01474 DAHP_synth_2 Class-I  52.7      17 0.00042   16.4   4.4   16   55-70     18-33  (437)
 25 TIGR02025 BchH magnesium chela  52.0      15 0.00039   16.7   2.9   97  232-350  1087-1195(1384)
 26 pfam05368 NmrA NmrA-like famil  51.0      18 0.00045   16.2   9.6   98   13-149     1-100 (232)
 27 KOG3363 consensus               49.7      17 0.00044   16.3   2.9   31   40-71    109-139 (196)
 28 PRK09072 short chain dehydroge  49.6      18 0.00047   16.1   5.3   74    7-110     2-75  (262)
 29 pfam04989 CmcI Cephalosporin h  48.6      19 0.00049   16.0   9.2   91   87-184    81-186 (202)
 30 COG1640 MalQ 4-alpha-glucanotr  48.5     6.3 0.00016   19.4   0.5   23  163-185   286-308 (520)
 31 PRK10525 cytochrome o ubiquino  47.3      20 0.00051   15.8   4.6   11  199-209    76-86  (305)
 32 PRK13405 bchH magnesium chelat  46.7      20 0.00052   15.8   3.0   23  419-441   482-504 (1207)
 33 TIGR01214 rmlD dTDP-4-dehydror  46.3      21 0.00052   15.7   4.7   32   12-53      1-32  (317)
 34 PRK00092 hypothetical protein;  43.3      23 0.00058   15.4   3.2   34  145-178    35-68  (153)
 35 cd06842 PLPDE_III_Y4yA_like Ty  42.4      23  0.0006   15.3   4.2   34  151-184   144-177 (423)
 36 TIGR00565 trpE_proteo anthrani  42.2      13 0.00032   17.3   1.3  118   53-197   228-359 (505)
 37 COG0779 Uncharacterized protei  42.0      24  0.0006   15.3   3.0   31  145-175    39-69  (153)
 38 TIGR02778 ligD_pol DNA polymer  40.9      23 0.00058   15.4   2.4   49  337-390    86-136 (251)
 39 pfam09861 DUF2088 Uncharacteri  38.7      27 0.00068   14.9   5.9  115  123-245    68-194 (203)
 40 KOG4128 consensus               38.4      23 0.00058   15.4   2.1   73  147-261   160-234 (457)
 41 TIGR01915 npdG NADPH-dependent  38.4      27 0.00068   14.9   4.8   50   13-70      3-57  (233)
 42 cd02964 TryX_like_family Trypa  38.1      27 0.00069   14.9   5.6   55   11-66     19-73  (132)
 43 TIGR03346 chaperone_ClpB ATP-d  38.1      27 0.00069   14.9   3.0   31   23-66    290-320 (852)
 44 COG4785 NlpI Lipoprotein NlpI,  38.0      18 0.00046   16.2   1.5   10  179-188   206-215 (297)
 45 TIGR02788 VirB11 P-type DNA tr  37.7      15 0.00039   16.7   1.1   32   11-49    159-190 (328)
 46 TIGR00873 gnd 6-phosphoglucona  37.1      20 0.00051   15.8   1.6   15   44-58     22-36  (480)
 47 PRK05653 fabG 3-ketoacyl-(acyl  36.6      28 0.00073   14.7   5.2   74    8-109     3-76  (246)
 48 pfam07505 Gp37_Gp68 Phage prot  36.4      18 0.00045   16.2   1.3   40  449-490   205-251 (253)
 49 CHL00194 ycf39 Ycf39; Provisio  36.4      29 0.00073   14.7   9.6  105   12-156     2-114 (319)
 50 pfam08877 MepB MepB protein. M  36.2      29 0.00074   14.7   8.1   71  317-392     5-75  (123)
 51 KOG3437 consensus               36.0      27 0.00069   14.9   2.2   23  338-360    93-115 (184)
 52 cd01067 globin_like superfamil  35.8      29 0.00075   14.6   3.8   34   56-89     56-90  (117)
 53 COG1429 CobN Cobalamin biosynt  33.5      31 0.00078   14.5   2.1   48  201-249   919-968 (1388)
 54 pfam08659 KR KR domain. This e  33.3      32 0.00082   14.4   7.5   73   12-109     2-75  (181)
 55 pfam05320 Pox_RNA_Pol_19 Poxvi  32.7      33 0.00083   14.3   3.4   41   15-70     82-122 (167)
 56 TIGR03159 cas_Csc1 CRISPR-asso  32.6      33 0.00084   14.3   2.5   47  302-353   112-159 (223)
 57 pfam08644 SPT16 FACT complex s  32.3      33 0.00085   14.2   2.4   27  333-359    18-48  (152)
 58 TIGR00763 lon ATP-dependent pr  29.8      25 0.00065   15.1   1.2   57  155-216   533-597 (941)
 59 KOG4278 consensus               29.6      26 0.00065   15.1   1.2   57  199-258   282-339 (1157)
 60 KOG0722 consensus               29.5      37 0.00094   13.9   2.5  131   22-168    11-150 (329)
 61 PRK07452 DNA polymerase III su  29.5      37 0.00094   13.9   7.7   13    7-19     29-41  (326)
 62 TIGR02776 NHEJ_ligase_prk DNA   29.1      34 0.00086   14.2   1.7  159   83-245    96-310 (645)
 63 COG4884 Uncharacterized protei  29.0      19 0.00049   16.0   0.5   67  150-237    39-107 (176)
 64 COG3240 Phospholipase/lecithin  28.7      34 0.00086   14.2   1.7   40  161-200   240-282 (370)
 65 TIGR01085 murE UDP-N-acetylmur  27.4      27  0.0007   14.9   1.0   15   40-54     83-97  (494)
 66 pfam07993 NAD_binding_4 Male s  27.2      40   0.001   13.7   6.5   77   16-107     2-84  (245)
 67 TIGR02088 LEU3_arch isopropylm  27.2      31 0.00079   14.5   1.2   15   10-24     61-75  (350)
 68 pfam02670 DXP_reductoisom 1-de  27.1      40   0.001   13.6   6.6   66   13-89      1-66  (129)
 69 COG0542 clpA ATP-binding subun  26.9      41   0.001   13.6   3.4   31   23-66    287-317 (786)
 70 COG3935 DnaD Putative primosom  26.9      41   0.001   13.6   2.1   18  446-463   178-195 (246)
 71 KOG1151 consensus               26.6      29 0.00073   14.7   1.0  146  167-350   402-571 (775)
 72 COG3487 IrpA Uncharacterized i  26.1      35 0.00089   14.1   1.4   38  153-202    66-120 (446)
 73 PRK05854 short chain dehydroge  25.8      42  0.0011   13.5   5.8  129    3-172     7-139 (314)
 74 COG3875 Uncharacterized conser  25.7      43  0.0011   13.5   6.6   46   24-69     82-129 (423)
 75 TIGR01849 PHB_depoly_PhaZ poly  25.4      28 0.00072   14.7   0.8   52    1-56    197-258 (414)
 76 KOG1384 consensus               25.2      31 0.00078   14.5   0.9   59   10-73      7-94  (348)
 77 TIGR02746 TraC-F-type type-IV   25.1      41   0.001   13.6   1.5   39  435-474   336-374 (900)
 78 cd05567 PTS_IIB_mannitol PTS_I  24.7      44  0.0011   13.3   2.1   34  159-192    51-84  (87)
 79 KOG2733 consensus               24.6      45  0.0011   13.3   6.7   49   10-67      5-53  (423)
 80 pfam04271 consensus             24.5      45  0.0011   13.3   2.1   19  445-463    48-66  (73)
 81 KOG1774 consensus               24.4      27  0.0007   14.9   0.5   41  183-233     6-49  (88)
 82 pfam03699 UPF0182 Uncharacteri  24.1      14 0.00035   17.0  -1.0   44  424-477   597-640 (771)
 83 PRK13245 hetR heterocyst diffe  24.0      28 0.00071   14.8   0.5   24  437-460   256-279 (299)
 84 PRK07024 short chain dehydroge  23.6      46  0.0012   13.2   4.6   70   10-109     2-71  (256)
 85 COG2607 Predicted ATPase (AAA+  23.6      46  0.0012   13.2   4.0   91   11-121    86-179 (287)
 86 PTZ00213 asparagine synthetase  23.5     6.6 0.00017   19.3  -2.7   41  259-307   182-222 (350)
 87 cd03009 TryX_like_TryX_NRX Try  23.5      47  0.0012   13.2   8.6   43   11-53     20-62  (131)
 88 COG0300 DltE Short-chain dehyd  23.2      47  0.0012   13.1   7.2  196    8-254     4-225 (265)
 89 COG3268 Uncharacterized conser  23.2      39   0.001   13.7   1.2  123   10-150     6-131 (382)
 90 TIGR00570 cdk7 CDK-activating   23.2      44  0.0011   13.4   1.4   14  419-432   303-316 (322)
 91 PRK09537 pylS pyrolysyl-tRNA s  22.9      48  0.0012   13.1   1.6   40   47-89     47-86  (420)
 92 pfam09093 Lyase_catalyt Lyase,  22.5      49  0.0012   13.1   3.4   55  234-303   187-241 (356)
 93 COG2382 Fes Enterochelin ester  22.3      49  0.0013   13.0   3.8  107  120-248    58-166 (299)
 94 PRK11052 malQ 4-alpha-glucanot  22.3      30 0.00075   14.6   0.4   27  156-185   428-454 (694)
 95 TIGR02371 ala_DH_arch alanine   21.9      45  0.0011   13.3   1.3   66   15-92    112-179 (327)
 96 TIGR02769 nickel_nikE nickel i  21.8      50  0.0013   13.0   1.5   35  328-362    68-102 (267)
 97 TIGR00154 ispE 4-diphosphocyti  21.7      39 0.00098   13.8   0.9   29  332-360   147-177 (322)
 98 PRK12493 magnesium chelatase;   21.6      51  0.0013   12.9   3.6   40  202-244   993-1036(1318)
 99 PRK01060 endonuclease IV; Prov  21.3      35 0.00088   14.1   0.6   21  322-342   242-262 (281)
100 KOG3559 consensus               21.2      40   0.001   13.7   0.9   14  207-220   317-330 (598)
101 COG1947 IspE 4-diphosphocytidy  20.9      48  0.0012   13.1   1.2   26  332-357   136-161 (289)
102 COG3564 Uncharacterized protei  20.7      53  0.0013   12.8   2.8   67  287-364    27-94  (116)
103 PRK02509 hypothetical protein;  20.7      19 0.00049   16.0  -0.9   44  424-477   725-768 (980)
104 pfam04076 BOF Bacterial OB fol  20.7      41   0.001   13.6   0.8   15  322-336    84-98  (126)
105 pfam03767 Acid_phosphat_B HAD   20.6      53  0.0013   12.8   5.0  100   76-185   104-204 (230)
106 PRK08313 acetyl-CoA acetyltran  20.5      53  0.0014   12.8   1.9   45   42-86      3-51  (391)
107 PRK11034 clpA ATP-dependent Cl  20.5      53  0.0014   12.8   3.0   22  425-446   548-569 (758)
108 KOG0672 consensus               20.4      53  0.0014   12.8   3.9   41    8-48     17-57  (218)
109 pfam02576 DUF150 Uncharacteriz  20.3      54  0.0014   12.7   3.2   33  145-177    27-59  (141)
110 COG2502 AsnA Asparagine synthe  20.3      19 0.00048   16.0  -0.9  161  107-305    46-218 (330)
111 TIGR00587 nfo apurinic endonuc  20.3     9.4 0.00024   18.2  -2.5   23  319-341   271-293 (318)

No 1  
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase; InterPro: IPR001282   Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types . The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells . Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes .; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0006006 glucose metabolic process.
Probab=100.00  E-value=0  Score=1547.33  Aligned_cols=480  Identities=44%  Similarity=0.763  Sum_probs=463.0

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             89878998644356676577999999972898757817999988869988999999999987423467998999989851
Q gi|254780504|r    9 HNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSL   88 (492)
Q Consensus         9 ~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~   88 (492)
                      ++|.|||||||||||||||+||||+|++.|+||+ +|.|||+||++||+++||+.+++++.++.+. +.+...|++|+++
T Consensus         1 ~~~~lVIFGAsGDLA~rKl~PaLy~L~~~g~L~~-~~~ivG~AR~~~s~~~fr~~~~~a~~~~~~~-~~~~~~~d~F~~~   78 (498)
T TIGR00871         1 DPCILVIFGASGDLARRKLIPALYRLFREGLLPP-DFRIVGVARRDLSDEEFRKVVREALIKFETE-EIDEQLLDEFAQR   78 (498)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHCC
T ss_conf             9960798167502034334468899987065989-8479987457688789999997433105786-6442259998607


Q ss_pred             CCEEECCCCCHHHHHHHHHHHCC-----CCCCCEEEEECCCHHHHHHHHHHHHHHCCCC-----C--CCEEEEECCCCCC
Q ss_conf             65786467897789988887405-----7678469984069568666777777725876-----4--4357760566789
Q gi|254780504|r   89 IFYINLDVEKNYGWELLGKLLDI-----DKTRIRVFYLAMSSAFFGKISQRIHANNLVT-----E--HTRVVLEKPIGSN  156 (492)
Q Consensus        89 ~~Y~~~d~~~~~~y~~L~~~l~~-----~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~-----~--~~RiViEKPFG~D  156 (492)
                      ++|+++|++|+++|..|++.|+.     ....|||||||+||++|++||++|+++||+.     +  |+|||||||||||
T Consensus        79 ~~Y~~g~~dd~~~y~~L~~~L~~l~~~~~~~gNr~fYLa~PP~~F~~i~~~L~~~~l~~~nq~~~~~w~Rvv~EKPFG~D  158 (498)
T TIGR00871        79 LSYVSGDVDDDESYKKLAELLEKLDKTYQTEGNRLFYLATPPSLFGTIIKQLKKHGLNERNQEQGKTWSRVVIEKPFGHD  158 (498)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf             35774467876889999999989998518889745650478441026788776531000135578844799987889998


Q ss_pred             HHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             88999999999873896883512420125687777887747752002528033307999998467702455553220017
Q gi|254780504|r  157 LSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGAL  236 (492)
Q Consensus       157 l~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~Gai  236 (492)
                      |+||++||+.|.++|+|+||||||||||||||||||+|||||.+|||+|||+|||+||||++|++||||||||||++|||
T Consensus       159 L~SA~~Ln~~~~~~F~E~qiYRIDHYLGKEtVqNllvlRFAN~~Fep~WNr~~Id~VqIT~aE~~GvEgRggYyD~~Gal  238 (498)
T TIGR00871       159 LASAQELNKQLRAVFKEDQIYRIDHYLGKETVQNLLVLRFANQIFEPLWNRRYIDHVQITVAESFGVEGRGGYYDKSGAL  238 (498)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHCCHH
T ss_conf             78999999998865484644674101264578899999647887532115776444899766504658630154540426


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCCC-CC
Q ss_conf             88765589999999871854458858999999999973068881122361365213667768734334101479886-64
Q gi|254780504|r  237 RDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGI-SD  315 (492)
Q Consensus       237 RDmvQNHllQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~~-S~  315 (492)
                      ||||||||||||||||||||.+++||+|||||||||+||||++++||..++|||||.+|+++|++||||+||+||++ |+
T Consensus       239 RDmvQNHLLQlL~L~AME~P~~~~a~~iRdEKVKVL~a~r~~~~~dv~~~~VrGQY~ag~~~G~~v~GY~eE~gV~~dS~  318 (498)
T TIGR00871       239 RDMVQNHLLQLLALVAMEPPVSFDADSIRDEKVKVLKALRPIDPDDVENNVVRGQYGAGEIGGVSVPGYLEEEGVDKDSN  318 (498)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCCEECCCCCCCCCCCCCCC
T ss_conf             67889899999999825888756867752036668864151483213104020032255558872256337788874548


Q ss_pred             CCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC--CEEEEEECCCCCEEEEEEECC
Q ss_conf             874389999970858678577755133468851799999854886437666547898--569999717965044433126
Q gi|254780504|r  316 TETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIET--NKLILRLQNNGEIEQFITTKD  393 (492)
Q Consensus       316 TeTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~~~~~~--N~Lvi~iqP~~~i~l~~~~K~  393 (492)
                      ||||||+|++||||||+||||||||||||++|+|||+|+||++|+++|.....+..|  |.|||||||+|||.|+|++|.
T Consensus       319 TeTF~A~~~~IdN~RW~GVPFYlRtGKrL~~k~tEi~~~Fk~~p~~~F~~~~~~~~pE~N~LvIRiQPDEGv~lkf~~K~  398 (498)
T TIGR00871       319 TETFAALKLEIDNWRWAGVPFYLRTGKRLPEKVTEIRIQFKTVPLNLFKANERDANPERNALVIRIQPDEGVYLKFNAKK  398 (498)
T ss_pred             CCEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCC
T ss_conf             21136778676143268782341026311576304899830665111000123467667606898669646878541468


Q ss_pred             CCCCCCEEEEEEEEEEECCCCCCC-CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCC
Q ss_conf             888774454666655302234568-9862489999998798335869899998458846999988734898--7457988
Q gi|254780504|r  394 HSTSNMKLKTTALRICCCSKRIKR-TPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQK--VDYYAAG  470 (492)
Q Consensus       394 pg~~~~~~~~~~l~~~~~~~~~~~-~pdaYe~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~--~~~Y~~G  470 (492)
                      ||. ++.+++++|||+|...+... .|+||||||+|||.||+|||+|+|||++|||||||||++|+..+.+  |..|++|
T Consensus       399 PG~-~~~~~~~~lDf~Y~~~~~~~~~peAYERLllD~l~GD~tLF~r~DEv~~aW~~v~P~L~~w~~~~~~~~~~~Y~aG  477 (498)
T TIGR00871       399 PGL-AFETRPVKLDFSYASRFGETKLPEAYERLLLDALLGDQTLFARDDEVEEAWRIVTPILEAWAANKGPSSPPNYEAG  477 (498)
T ss_pred             CCC-CCEEEEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             875-4423786542020011022577344579999985357777405689987414522589998487788887778888


Q ss_pred             CCCHHHHHHHHHHCCCCCCCC
Q ss_conf             997188999999818844778
Q gi|254780504|r  471 TWGPDQSDVLLQKDGRRWHNN  491 (492)
Q Consensus       471 S~GP~~a~~l~~~~g~~W~~~  491 (492)
                      ||||++|++|++|+|++|++.
T Consensus       478 S~GP~~ad~l~~~~G~~W~~~  498 (498)
T TIGR00871       478 SWGPKEADELIEKDGRSWRKP  498 (498)
T ss_pred             CCCHHHHHHHHHCCCCCCCCC
T ss_conf             734589999974278645789


No 2  
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=1365.94  Aligned_cols=478  Identities=47%  Similarity=0.796  Sum_probs=459.9

Q ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             89898789986443566765779999999728987578179999888699889999999999874234679989999898
Q gi|254780504|r    7 NIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFL   86 (492)
Q Consensus         7 ~~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~   86 (492)
                      ...+|++||||||||||+||||||||+|+..|++++ +|+|||+||++|++++|++.+++++ .+.+..+.+++.|++|+
T Consensus         4 ~~~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~-~~~IiG~aR~~~s~e~f~~~~~~~i-~~~~~~~~~~~~~~~F~   81 (483)
T COG0364           4 TVEPFDLVIFGATGDLARRKLFPALYRLYKEGLLPE-DFRIIGVARSKWSNEEFRALVREAI-EFAKTEEIDEAVWEEFA   81 (483)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCHHHHHHHH
T ss_conf             667725999756316665068899999997588899-8659988567478699999999876-41355544689999998


Q ss_pred             HHCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             51657864678977899888874057678469984069568666777777725876443577605667898899999999
Q gi|254780504|r   87 SLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAI  166 (492)
Q Consensus        87 ~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~  166 (492)
                      ++++|+++|++++++|+.|++.++..+. +++||||+||++|++||++|+++|++.+..|||||||||+||+||++||+.
T Consensus        82 ~~~~Y~~~d~~~~~~~~~L~~~l~~~~~-~~vfYLa~pP~~f~~i~~~L~~~~l~~~~~RlviEKPfG~dL~SA~~Ln~~  160 (483)
T COG0364          82 SRLSYVSGDYDDPESFDELKDLLGELEG-NRVFYLAVPPSLFGTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQ  160 (483)
T ss_pred             HCEEEEECCCCCHHHHHHHHHHHHCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             5017971378987899999999850357-559999538388899999998756888881499968888877879999999


Q ss_pred             HHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98738968835124201256877778877477520025280333079999984677024555532200178876558999
Q gi|254780504|r  167 TRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQ  246 (492)
Q Consensus       167 l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHllQ  246 (492)
                      |+++|+|+|||||||||||||||||++|||||.+|||+|||+||+|||||++|++||||||+|||++|||||||||||||
T Consensus       161 i~~~F~E~qIyRIDHYLGKetVQNllalRFaN~~fE~lWNr~~Id~VqIt~aE~~GvEgRggYYD~~GalRDMvQNHlLQ  240 (483)
T COG0364         161 ISAVFKEEQIYRIDHYLGKETVQNLLALRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDKAGALRDMVQNHLLQ  240 (483)
T ss_pred             HHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHCCCHHHHHHHHHHHH
T ss_conf             98747841367631025789988899998715666545332551058999863035365422111146199999999999


Q ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCC-CCCCCCEEEEEEE
Q ss_conf             999987185445885899999999997306888112236136521366776873433410147988-6648743899999
Q gi|254780504|r  247 LLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLG-ISDTETFVAIKAN  325 (492)
Q Consensus       247 lL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~-~S~TeTfaa~~l~  325 (492)
                      ||||+|||||+++++++||+||+|||||+||++.++|.+++|||||++|.++|++||||++|+||+ +|+||||||+|++
T Consensus       241 lL~LvAME~P~~~~ad~irdEKvKvLkal~p~~~~~~~~~~VrGQY~ag~~~g~~v~gY~eE~gv~~dS~tETFvA~k~~  320 (483)
T COG0364         241 LLCLVAMEPPASFSADDIRDEKVKVLKALRPISEENVKEDTVRGQYTAGEIDGKKVPGYLEEEGVAKDSNTETFVAIKLE  320 (483)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf             99998317998899799999999999752889701112305631200243278556763057789999985435899998


Q ss_pred             ECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCC-CCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
Q ss_conf             7085867857775513346885179999985488643766654-789856999971796504443312688877445466
Q gi|254780504|r  326 IDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMS-KIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTT  404 (492)
Q Consensus       326 idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~~-~~~~N~Lvi~iqP~~~i~l~~~~K~pg~~~~~~~~~  404 (492)
                      ||||||+||||||||||||++|.|||+|+||++|+++|..... .+.+|.|||||||+|+|.+++++|.||. +++..++
T Consensus       321 IdnwRW~GVPFylRtGKrl~~k~teI~i~FK~~p~~lF~~~~~~~~~~N~LviriQPdegI~l~~~~K~PG~-~~~~~~l  399 (483)
T COG0364         321 IDNWRWAGVPFYLRTGKRLPKKVTEIVIHFKRVPHNLFSDPSRSSLEQNRLVIRIQPDEGISLKFNVKVPGL-GLQTRPL  399 (483)
T ss_pred             ECCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCC-CCCCCEE
T ss_conf             558751799889973788887736999997778844227755576667679999779886489995368987-6410014


Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             66553022345689862489999998798335869899998458846999988734898745798899718899999981
Q gi|254780504|r  405 ALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKD  484 (492)
Q Consensus       405 ~l~~~~~~~~~~~~pdaYe~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a~~l~~~~  484 (492)
                      +|++.+.... ...|+||||||+|||+||+|||+|+||||+||+||||||++|+  ..+|+.|++|||||++|++|++++
T Consensus       400 ~l~f~~~~~~-~~~~~AYErLllD~i~Gd~tlF~r~DEve~aWk~vdpIl~~w~--~~~~~~Y~aGswGP~~a~~li~~~  476 (483)
T COG0364         400 DLDFSYDSKF-MRIPEAYERLLLDAIRGDQTLFVRRDEVEAAWKIVDPILEAWK--NDPPPPYEAGSWGPKAADELLERD  476 (483)
T ss_pred             EEECCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             5202004455-6681379999999986986446767999988886058876226--678877678886869899886235


Q ss_pred             CCCCCCC
Q ss_conf             8844778
Q gi|254780504|r  485 GRRWHNN  491 (492)
Q Consensus       485 g~~W~~~  491 (492)
                      |+.||..
T Consensus       477 g~~W~~~  483 (483)
T COG0364         477 GREWRRP  483 (483)
T ss_pred             CCCCCCC
T ss_conf             8787899


No 3  
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=100.00  E-value=0  Score=1354.93  Aligned_cols=482  Identities=48%  Similarity=0.823  Sum_probs=465.7

Q ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             89898789986443566765779999999728987578179999888699889999999999874234679989999898
Q gi|254780504|r    7 NIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFL   86 (492)
Q Consensus         7 ~~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~   86 (492)
                      ..+||+|||||||||||+||||||||+|+++|+||+ +++|||+||+++++++|++.+++++.++.+. ..+++.|++|+
T Consensus         6 ~~~p~~~VifGatGDLa~rkL~PaL~~L~~~g~l~~-~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~-~~~~~~~~~F~   83 (495)
T PRK05722          6 TAEPCDLVIFGATGDLARRKLLPALYQLYKAGLLPE-DFRIIGVARREWSDEDFREVVREALKEFARE-PFDEEVWDRFL   83 (495)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf             999979999777138877479999999997599999-9789999899899899999999999975568-77999999999


Q ss_pred             HHCCEEECCCCCHHHHHHHHHHHCC-----CCCCCEEEEECCCHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCCHHH
Q ss_conf             5165786467897789988887405-----7678469984069568666777777725876--44357760566789889
Q gi|254780504|r   87 SLIFYINLDVEKNYGWELLGKLLDI-----DKTRIRVFYLAMSSAFFGKISQRIHANNLVT--EHTRVVLEKPIGSNLSS  159 (492)
Q Consensus        87 ~~~~Y~~~d~~~~~~y~~L~~~l~~-----~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~--~~~RiViEKPFG~Dl~S  159 (492)
                      ++++|+++|++++++|..|++.++.     ....+|+||||+||++|..||++|+++||+.  +|+|||||||||+||+|
T Consensus        84 ~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~~~~~~~~fYLA~pP~~f~~i~~~l~~~~l~~~~~~~RvvvEKPFG~Dl~S  163 (495)
T PRK05722         84 ERLFYVSGDVTDPESYEALKELLEELDEKYGTGGNRVFYLATPPSLFGTICENLAAAGLNATGGWSRVVIEKPFGHDLAS  163 (495)
T ss_pred             HHCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHH
T ss_conf             75889952899867899999999976653078875599995787999999999997489878885037885478787677


Q ss_pred             HHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999873896883512420125687777887747752002528033307999998467702455553220017887
Q gi|254780504|r  160 AQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDM  239 (492)
Q Consensus       160 A~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDm  239 (492)
                      |++||+.|+++|+|+||||||||||||||||||+|||||++|||+|||+||++||||++|++||||||+|||++||||||
T Consensus       164 A~~Ln~~l~~~f~E~qIyRIDHYLGKe~VqNll~lRFaN~ifeplWN~~~I~~VqIt~~E~~GvegR~~yYD~~GalRDm  243 (495)
T PRK05722        164 ARELNDQVGEVFKEEQIYRIDHYLGKETVQNILALRFANSLFEPLWNRNYIDHVQITVAETVGVEGRGGYYDKAGALRDM  243 (495)
T ss_pred             HHHHHHHHHHHCCHHHEEEEEHHCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCHHHHH
T ss_conf             99999999986685346652000567899989999844434454544034116899985277746165564045409999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCCC-CCCCC
Q ss_conf             65589999999871854458858999999999973068881122361365213667768734334101479886-64874
Q gi|254780504|r  240 IQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGI-SDTET  318 (492)
Q Consensus       240 vQNHllQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~~-S~TeT  318 (492)
                      |||||||||||||||+|.++++++||+||+||||++||+++++|.+++|||||++|.++|+++|||++|+||++ |+|||
T Consensus       244 vQNHLLQlL~lvAME~P~~~~~~~ir~eK~kVLksir~i~~~~v~~~~VrGQY~~g~~~g~~~~gY~~e~gV~~~S~TeT  323 (495)
T PRK05722        244 VQNHLLQLLALVAMEPPASLDADSIRDEKVKVLRALRPITPEDVKENTVRGQYTAGWIGGKPVPGYREEEGVNPDSNTET  323 (495)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             99999999999962798899989999999999971789996886430431000256658821676446689998998751


Q ss_pred             EEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf             38999997085867857775513346885179999985488643766654789856999971796504443312688877
Q gi|254780504|r  319 FVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSN  398 (492)
Q Consensus       319 faa~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~~~~~~N~Lvi~iqP~~~i~l~~~~K~pg~~~  398 (492)
                      |||++++||||||+||||||||||+|+++.|||+|+||++|+++|...+....+|+|||+|||+++|.+++++|.||. +
T Consensus       324 Faa~~l~Idn~RW~GVPF~lrtGK~L~~~~teI~i~FK~~p~~~f~~~~~~~~~N~Lvi~iqP~e~i~l~~~~K~pG~-~  402 (495)
T PRK05722        324 FVALKLFIDNWRWAGVPFYLRTGKRLPKKVTEIVIHFKPVPHNLFGESAQNLPPNKLVIRIQPDEGISLRFNAKVPGE-G  402 (495)
T ss_pred             CEEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCC-C
T ss_conf             014689962775578878997056667660599999826981105776678889879999668874579998637898-8


Q ss_pred             CEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             44546666553022345689862489999998798335869899998458846999988734898745798899718899
Q gi|254780504|r  399 MKLKTTALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSD  478 (492)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~pdaYe~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a~  478 (492)
                      +.+.++.|+++|...+..+.|+|||+||+|||+||+++|+|+||||+||+||||||++|+..+.+|.+|++|||||++|+
T Consensus       403 ~~~~~~~l~~~~~~~~~~~~~~aYErLl~D~~~Gd~tlF~r~dEve~sW~ivdpiL~~w~~~~~~~~~Y~~GS~GP~~a~  482 (495)
T PRK05722        403 MELRPVKLDFSYSEAFGEESPDAYERLLLDVMRGDQTLFVRRDEVEAAWKWVDPILEAWAENNDPPPPYPAGTWGPEAAD  482 (495)
T ss_pred             CCEEEEEEEEECHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             70379888866120169989774899999997699666789899999999879999999757999878899997989999


Q ss_pred             HHHHHCCCCCCCC
Q ss_conf             9999818844778
Q gi|254780504|r  479 VLLQKDGRRWHNN  491 (492)
Q Consensus       479 ~l~~~~g~~W~~~  491 (492)
                      +|++++|++||+.
T Consensus       483 ~l~~~~g~~W~~~  495 (495)
T PRK05722        483 ALLARDGRSWREP  495 (495)
T ss_pred             HHHHHCCCCCCCC
T ss_conf             9997159906898


No 4  
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=1352.63  Aligned_cols=481  Identities=44%  Similarity=0.739  Sum_probs=463.9

Q ss_pred             CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             89898987899864435667657799999997289875781799998886998899999999998742346799899998
Q gi|254780504|r    5 TPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQK   84 (492)
Q Consensus         5 tp~~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~   84 (492)
                      ++..+||+|||||||||||+||||||||+|++.|++|+ +++|||+||+++++++|++.++++++++.++ ..+++.|++
T Consensus         3 ~~~~~p~~~VIfGaTGDLa~RKL~PAL~~L~~~g~lp~-~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~-~~~~~~~~~   80 (486)
T PRK12853          3 TAPAPPCTLVIFGATGDLARRKLLPALYRLARAGLLPE-DLRIIGVGRDDWSDEQWRKRVRESLRAFGAD-KFDDAVWDR   80 (486)
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHH
T ss_conf             88899826999766338877479999999997699999-9889999799899899999999999985357-689999999


Q ss_pred             HHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             98516578646789778998888740576784699840695686667777777258764435776056678988999999
Q gi|254780504|r   85 FLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIH  164 (492)
Q Consensus        85 F~~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn  164 (492)
                      |+++++|+++|++++++|..|++.++  ...+|+||||+||++|..|+++|+++|++.+++|||||||||+||+||++||
T Consensus        81 F~~~~~Y~~~d~~~~~~~~~L~~~l~--~~~~~ifYLAvpP~~f~~i~~~L~~~~l~~~~~RvvvEKPFG~Dl~SA~~Ln  158 (486)
T PRK12853         81 LAERLSYVAGDVTDPADYARLAEALE--SLGNPVFYLAVPPSLFAPIVENLAAAGLLEGTARVVLEKPFGHDLASARALN  158 (486)
T ss_pred             HHHHCEEEECCCCCHHHHHHHHHHHC--CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             98648899648998789999999863--6675489994587998999999997089876632788547778768899999


Q ss_pred             HHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99987389688351242012568777788774775200252803330799999846770245555322001788765589
Q gi|254780504|r  165 AITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHL  244 (492)
Q Consensus       165 ~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHl  244 (492)
                      +.|+++|+|+||||||||||||||||||+|||||++|||+|||+||++||||++|++||||||+|||++|||||||||||
T Consensus       159 ~~l~~~f~E~qIyRIDHYLGKe~VqNil~lRFaN~~fe~lWN~~~I~~VqIt~~E~~GvegR~~YYD~~GalRDmvQNHL  238 (486)
T PRK12853        159 ATLAAVFDEDQIYRIDHFLGKETVQNLLALRFANALFEPLWNRNYIDHVQITVAETLGVEGRGGFYDATGALRDMVQNHL  238 (486)
T ss_pred             HHHHHHCCHHHEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHH
T ss_conf             99998668545675300066899998999986353330244201625789998457774636666504550999999999


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCCC-CCCCCEEEEE
Q ss_conf             999999871854458858999999999973068881122361365213667768734334101479886-6487438999
Q gi|254780504|r  245 LQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGI-SDTETFVAIK  323 (492)
Q Consensus       245 lQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~~-S~TeTfaa~~  323 (492)
                      ||||||||||||.++++++||+||+||||++||++++++..  |||||++|.++|++||||++|+||++ |+||||||++
T Consensus       239 lQlL~LvAME~P~~~~a~~ir~eKvkVLkalr~i~~~~v~~--VrGQY~~g~~~g~~v~gY~~e~gV~~dS~TeTf~a~~  316 (486)
T PRK12853        239 LQLLALVAMEPPASFDADAVRDEKAKVLRALRPLDPDDVAR--VRGQYTAGAVGGEPVPGYRDEPGVDPDSRTETFVALK  316 (486)
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH--HHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             99999997489778998999999999997078999788645--4402335664882167733578999988875112468


Q ss_pred             EEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCC-CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEE
Q ss_conf             99708586785777551334688517999998548864376665-47898569999717965044433126888774454
Q gi|254780504|r  324 ANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQM-SKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLK  402 (492)
Q Consensus       324 l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~-~~~~~N~Lvi~iqP~~~i~l~~~~K~pg~~~~~~~  402 (492)
                      ++||||||+||||||||||+|++|.|||+|+||++|+.+|.... ....+|+|+|+|||+++|.+++++|.||. .+.++
T Consensus       317 l~Idn~RW~GVPF~lrtGK~L~~~~teI~i~Fk~~p~~~f~~~~~~~~~~N~Lvi~iqP~e~i~l~~~~K~PG~-~~~~~  395 (486)
T PRK12853        317 LEIDNWRWAGVPFYLRTGKRLAERRTEIVITFKPVPHALFRPTGVGGLEPNRLVIRLQPDEGISLELNVKRPGP-GMRLE  395 (486)
T ss_pred             EEECCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCC-CCEEE
T ss_conf             88627755788789970566676615999998168822136876678888879999669982789997048899-87058


Q ss_pred             EEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             66665530223456898624899999987983358698999984588469999887348987457988997188999999
Q gi|254780504|r  403 TTALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQ  482 (492)
Q Consensus       403 ~~~l~~~~~~~~~~~~pdaYe~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a~~l~~  482 (492)
                      +++|+++|...+....|+||||||+|||.||+|+|+|+||||+||+||||||++|+.++.+|++|++|||||++|++|++
T Consensus       396 ~~~l~~~~~~~~~~~~~~aYErLl~d~~~Gd~tlF~r~dEve~aW~ivdpil~~w~~~~~~~~~Y~~GS~GP~~a~~ll~  475 (486)
T PRK12853        396 PVSLDFDLADAFDERPLEAYERLLLDVLRGDPTLFVRADEVEAAWRIVDPILDAWAQDPVPPREYPAGSWGPAAADALLA  475 (486)
T ss_pred             EEEEEEECHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             98744141431599998808999999976996666998999999998799999997589998888999979899999997


Q ss_pred             HCCCCCCCCC
Q ss_conf             8188447789
Q gi|254780504|r  483 KDGRRWHNNT  492 (492)
Q Consensus       483 ~~g~~W~~~~  492 (492)
                      ++|++||++.
T Consensus       476 ~~g~~W~~p~  485 (486)
T PRK12853        476 RDGRAWREPA  485 (486)
T ss_pred             HCCCCCCCCC
T ss_conf             4599358999


No 5  
>PTZ00309 glucose-6-phosphate dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=1329.43  Aligned_cols=470  Identities=35%  Similarity=0.580  Sum_probs=439.3

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             89878998644356676577999999972898757817999988869988999999999987423467998999989851
Q gi|254780504|r    9 HNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSL   88 (492)
Q Consensus         9 ~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~   88 (492)
                      .+-||||||||||||+||||||||+||.+|+||+ +++|||+||+++++.+  ...++.+.++......+++.|++|+++
T Consensus        67 ~~LTiVIFGAtGDLA~RKL~PAL~~L~~~g~Lp~-~~~IiG~aR~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~F~~~  143 (556)
T PTZ00309         67 RALTIIVLGASGDLAKKKTFPALFDLYCNGLLPP-EVNILGYARSKVEDVE--KWKKDTLARYFPNLKERECHAEDFLKH  143 (556)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             9765999754228776069999999997599999-9889999899886489--999999999603577678999999962


Q ss_pred             CCEEECCCCCHHHHHHHHHHHCC--------CCCCCEEEEECCCHHHHHHHHHHHHHHCCCC---CCCEEEEECCCCCCH
Q ss_conf             65786467897789988887405--------7678469984069568666777777725876---443577605667898
Q gi|254780504|r   89 IFYINLDVEKNYGWELLGKLLDI--------DKTRIRVFYLAMSSAFFGKISQRIHANNLVT---EHTRVVLEKPIGSNL  157 (492)
Q Consensus        89 ~~Y~~~d~~~~~~y~~L~~~l~~--------~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~---~~~RiViEKPFG~Dl  157 (492)
                      ++|+++|++++++|..|++.+..        ....|||||||+||++|+.||++|+++|++.   +|+|||||||||+||
T Consensus       144 l~Y~~gd~~~~~~y~~L~~~l~~~~~~~~~~~~~~nrifYLAvpP~~f~~i~~~L~~~~l~~~~~g~~RiVvEKPFG~Dl  223 (556)
T PTZ00309        144 ISYISGSYDEADDFKRLNKVILEKEEAFQGPEKGGNRLFYLALPPSVFAEVCEGIHKGAMPKEVGGWVRVIVEKPFGRDT  223 (556)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf             90880689987899999999998775312566777558999248889999999999846888888841477525788850


Q ss_pred             HHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             89999999998738968835124201256877778877477520025280333079999984677024555532200178
Q gi|254780504|r  158 SSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALR  237 (492)
Q Consensus       158 ~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiR  237 (492)
                      +||++||+.|+++|+|+||||||||||||||||||+|||||++|||+|||+||+|||||++|++||||||+|||++||||
T Consensus       224 ~SA~~Ln~~L~~~F~E~QIyRIDHYLGKE~VQNil~lRFaN~ifEplWNr~~Id~VQIt~aE~lGvegRg~YYD~~GalR  303 (556)
T PTZ00309        224 ESSAELSSALEPLFDESQLFRIDHYLGKEMVQNIIVTRFANRVFSALWNSSNIACVQITFKEDIGTEGRGGYFDSIGIIR  303 (556)
T ss_pred             HHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCHHH
T ss_conf             33999999999657997844001003489999999998613302435363662478999826888653665750320699


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCCC-CCC
Q ss_conf             8765589999999871854458858999999999973068881122361365213667768734334101479886-648
Q gi|254780504|r  238 DMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGI-SDT  316 (492)
Q Consensus       238 DmvQNHllQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~~-S~T  316 (492)
                      |||||||||||||||||||.++++++||+||+|||||+||++++++    |||||++|..+  .||||+||+||++ |+|
T Consensus       304 DMvQNHLLQlLaLvAMEpP~s~~a~~IRdEKvkVLrslrpi~~edv----VrGQY~a~~~g--~v~GY~dE~gV~~dS~T  377 (556)
T PTZ00309        304 DVMQNHLTQILSLLAMEKPRSLSAEDIRDEKVKVLRCIEPITKEEC----VLGQYTASADG--SIPGYLDDETVPKGSTC  377 (556)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCE----EEEEECCCCCC--CCCCCCCCCCCCCCCCC
T ss_conf             9999999999999971897779989999999999963688983115----66454367788--88761146899988998


Q ss_pred             CCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf             74389999970858678577755133468851799999854886437666547898569999717965044433126888
Q gi|254780504|r  317 ETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHST  396 (492)
Q Consensus       317 eTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~~~~~~N~Lvi~iqP~~~i~l~~~~K~pg~  396 (492)
                      |||||++++||||||+||||||||||+|++|.|||+|+||++|+.+|..    ..+|+|||+|||+|+|.+++++|.||.
T Consensus       378 ETFaA~kl~IDN~RW~GVPFyLRTGKrL~~k~tEI~I~FK~~p~~~~~~----~~~N~LviriQP~e~I~l~~~~K~PG~  453 (556)
T PTZ00309        378 PTFAVARLHINNDRWRGVPFILKAGKALEERYVEIRIQFKDEVHPYGDA----TQRNELVIRAQPSEAMYLKLTTKVPGL  453 (556)
T ss_pred             CCCEEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCC----CCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf             6105789997288427888799747787878259999968898544678----889879999889980799998138988


Q ss_pred             CCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             77445466665530223456898624899999987983358698999984588469999887348987457988997188
Q gi|254780504|r  397 SNMKLKTTALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQ  476 (492)
Q Consensus       397 ~~~~~~~~~l~~~~~~~~~~~~pdaYe~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~  476 (492)
                       .+.+.+++|+++|...+....||||||||+|||.||+|||+|+||||+||+||||||++|+..+.+|++|++|||||++
T Consensus       454 -~~~~~~~~ld~~y~~~~~~~~pdAYErLLlDal~Gd~tLF~r~DEve~aWrivdPiL~~w~~~~~~~~~Y~aGS~GP~~  532 (556)
T PTZ00309        454 -SNDTHQTELDLSYHHRYNVRLPDAYESLINDALLGNSTNFVRKDELDVAWRIFTPLLHQIDRGEIKPIPYSAGSRGPKE  532 (556)
T ss_pred             -CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf             -8855687630205112699687649999999977997678988999999998799999998579998888999979899


Q ss_pred             HHHHHHHCCC------CCCCCC
Q ss_conf             9999998188------447789
Q gi|254780504|r  477 SDVLLQKDGR------RWHNNT  492 (492)
Q Consensus       477 a~~l~~~~g~------~W~~~~  492 (492)
                      |++|++|+|+      .|++++
T Consensus       533 Ad~Ll~r~G~~~~~~~~w~~~~  554 (556)
T PTZ00309        533 ADEFIKKNGFKRSLGYNWPQSN  554 (556)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCC
T ss_conf             9999996496578875588989


No 6  
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=1312.38  Aligned_cols=463  Identities=40%  Similarity=0.647  Sum_probs=438.9

Q ss_pred             CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             89898987899864435667657799999997289875781799998886998899999999998742346799899998
Q gi|254780504|r    5 TPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQK   84 (492)
Q Consensus         5 tp~~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~   84 (492)
                      .|...||+|||||||||||+||||||||+|++.|+||+ +++|||+||+++++++||+.+++++.++... ..+++.|++
T Consensus         6 ~p~~~P~~~VIfGatGDLa~rKL~PaL~~L~~~g~Lp~-~~~IiG~aR~~~~~~~fr~~v~~~l~~~~~~-~~~~~~~~~   83 (475)
T PRK12854          6 IPAAGPTVFVLFGATGDLAKRLLMPALFNLARDGLLAR-NWRIVGTGRNPLSADEFRARLRDAVDEFGAH-CLDDELWEG   83 (475)
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHH
T ss_conf             99999979999534108866069999999997599999-9789999899899899999999999975678-889999999


Q ss_pred             HHHHCCEEECCCCCHHHHHHHHHHHCC-----CCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH
Q ss_conf             985165786467897789988887405-----767846998406956866677777772587644357760566789889
Q gi|254780504|r   85 FLSLIFYINLDVEKNYGWELLGKLLDI-----DKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSS  159 (492)
Q Consensus        85 F~~~~~Y~~~d~~~~~~y~~L~~~l~~-----~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~S  159 (492)
                      |+++++|+++|++ +++|..|++.++.     ....+|+||||+||++|+.||++|+++||+ +++|||||||||+||+|
T Consensus        84 f~~~~~y~~~d~~-~~~~~~L~~~l~~~~~~~~~~~~~ifYLA~pP~~f~~i~~~l~~~~l~-~~~RvvvEKPFG~dl~S  161 (475)
T PRK12854         84 FAKRLDYAGGDFT-PAGPGALAAAVRAARAELGPDAQLVHYLATPPRAFPEVTTMLGAAGLV-DGSRVVYEKPFGTDLAS  161 (475)
T ss_pred             HHHCCEEEEECCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCCHH
T ss_conf             9852889951588-132999999999877640887646999935869889999999972789-87714773688887152


Q ss_pred             HHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999873896883512420125687777887747752002528033307999998467702455553220017887
Q gi|254780504|r  160 AQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDM  239 (492)
Q Consensus       160 A~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDm  239 (492)
                      |++||+.|+++|+|+||||||||||||||||||+|||||++|||+|||+||+|||||++|++||||||+|||++||||||
T Consensus       162 a~~Ln~~l~~~f~E~qiyRIDHYLGKE~VQNll~lRFaN~ifeplWNr~~I~~VqIt~~E~~GvegR~~YYD~~GalRDm  241 (475)
T PRK12854        162 AEELNAFVHKVFDESQIFRIDHFLGKEAVQNILAFRFANGLFEPIWNREHIDHVQIDIPETLGVDTRAAFYDSTGALRDM  241 (475)
T ss_pred             HHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCHHHHH
T ss_conf             99999999975786552410101248999989999853555122434077248999984677756677675044469999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCCC-CCCCC
Q ss_conf             65589999999871854458858999999999973068881122361365213667768734334101479886-64874
Q gi|254780504|r  240 IQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGI-SDTET  318 (492)
Q Consensus       240 vQNHllQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~~-S~TeT  318 (492)
                      |||||||||||||||||.++++++|||||+|||||+||+++++|    |||||+          ||++|+||++ |+|||
T Consensus       242 vQNHLLQlL~LvAMEpP~~~~~~~iRdeKvkvL~alrp~~~~~v----vrGQY~----------gY~~E~gV~~~S~TeT  307 (475)
T PRK12854        242 VVTHLFQVLAMVAMEPPAALGPDAIREEKNKVLGAFRPLDPANV----VRGQYS----------GYREEDGVAPDSTTET  307 (475)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHE----EECCCC----------CCCCCCCCCCCCCCCC
T ss_conf             99999999999973898899989999999999985578988981----102435----------6455789899898865


Q ss_pred             EEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCC-CCCCCCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf             3899999708586785777551334688517999998548864376665-478985699997179650444331268887
Q gi|254780504|r  319 FVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQM-SKIETNKLILRLQNNGEIEQFITTKDHSTS  397 (492)
Q Consensus       319 faa~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~-~~~~~N~Lvi~iqP~~~i~l~~~~K~pg~~  397 (492)
                      |||++++||||||+||||||||||+|++|+|||+|+||++|+.+|.... +...||+|||+|||+|+|.+++++|.||. 
T Consensus       308 faa~kl~IdN~RW~GVPFylRtGK~L~~~~teI~I~Fk~~p~~~f~~~~~~~~~pN~LviriqP~e~i~l~~~~K~PG~-  386 (475)
T PRK12854        308 FVALKVWIDNWRWAGVPFYLRTGKRMAERDQEISIVFKEAPRSPFPESGLGRPGPNHLTFDLQPNEGVSLSFYAKRPGP-  386 (475)
T ss_pred             CEEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCC-
T ss_conf             4679999728734788889982467788717999998579733147865467889879998479985899999778999-


Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             74454666655302234568986248999999879833586989999845884699998873489874579889971889
Q gi|254780504|r  398 NMKLKTTALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQS  477 (492)
Q Consensus       398 ~~~~~~~~l~~~~~~~~~~~~pdaYe~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a  477 (492)
                      ++.+.+++|+++|...+....++||||||+|||+||+|||+|+||||+||+||||||+.    ..+|.+|++|||||++|
T Consensus       387 ~~~~~~~~l~~~~~~~~~~~~~~aYErLLlD~l~Gd~tlF~r~DEve~aW~ivdpil~~----~~~~~~Y~aGS~GP~~A  462 (475)
T PRK12854        387 GMKLEKGSLGFSLQEFGKATPALGYERLILDVLRGDRTLFTRADGIESAWRRVQPLLDD----PPPVKPYQPGTWGPEAA  462 (475)
T ss_pred             CCCEEEEECCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCHHHH
T ss_conf             87246874455100016898987389999999779966779879999999962898759----99998879999798999


Q ss_pred             HHHHHHCCCCCCCCC
Q ss_conf             999998188447789
Q gi|254780504|r  478 DVLLQKDGRRWHNNT  492 (492)
Q Consensus       478 ~~l~~~~g~~W~~~~  492 (492)
                      ++|++++|  ||+..
T Consensus       463 ~~Ll~~dg--w~~pg  475 (475)
T PRK12854        463 HELLAPDA--WHLPG  475 (475)
T ss_pred             HHHHHCCC--CCCCC
T ss_conf             99986658--77999


No 7  
>KOG0563 consensus
Probab=100.00  E-value=0  Score=1176.80  Aligned_cols=472  Identities=38%  Similarity=0.648  Sum_probs=448.2

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             89878998644356676577999999972898757817999988869988999999999987423467998999989851
Q gi|254780504|r    9 HNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSL   88 (492)
Q Consensus         9 ~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~   88 (492)
                      .+.+|||||||||||+||+|||||+||..|.+|+ +|.|+|+||++++++++|+.+.+.+.+..... .+.+++++|.++
T Consensus        16 ~~~~iiVfGASGDLAKKK~fPaLf~L~~~g~lp~-~~~i~GYARSklt~ee~~~~~~~~l~~~~~~~-~~~~k~~~F~~~   93 (499)
T KOG0563          16 STLSIIVFGASGDLAKKKIFPALFALYREGLLPE-DFKIFGYARSKLTDEELRKSISETLKCRKDEK-NCGEKLEDFLKR   93 (499)
T ss_pred             CEEEEEEEECCCHHHHCCHHHHHHHHHHHCCCCC-CEEEEEEECCCCCHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHH
T ss_conf             4179999944730542431589999987254777-60799886323776999998774157884145-565649999987


Q ss_pred             CCEEECCCCCHHHHHHHHHHHCC-----CCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHH
Q ss_conf             65786467897789988887405-----767846998406956866677777772587-644357760566789889999
Q gi|254780504|r   89 IFYINLDVEKNYGWELLGKLLDI-----DKTRIRVFYLAMSSAFFGKISQRIHANNLV-TEHTRVVLEKPIGSNLSSAQE  162 (492)
Q Consensus        89 ~~Y~~~d~~~~~~y~~L~~~l~~-----~~~~~rifYLAiPP~~f~~i~~~L~~~~l~-~~~~RiViEKPFG~Dl~SA~e  162 (492)
                      ++|++|.|+++++|+.|++.++.     +...|||||||+||++|.+|+++|++.|.. .+|+|||||||||+|++||++
T Consensus        94 ~sY~~G~YD~~e~f~~Ln~~i~~~e~~~~~~a~RiFYlalPPsvy~~V~~~I~~~~~~~~GwtRvIVEKPFG~d~~Sa~~  173 (499)
T KOG0563          94 VSYVSGQYDTAEGFQELNKHIEEHEKEANSEANRIFYLALPPSVYVDVAKNIKKSCSSVNGWTRVIVEKPFGRDLESAQE  173 (499)
T ss_pred             HEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             41437877977889999999999872245654428999548288799999876512688984479985578876686999


Q ss_pred             HHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999873896883512420125687777887747752002528033307999998467702455553220017887655
Q gi|254780504|r  163 IHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQN  242 (492)
Q Consensus       163 Ln~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQN  242 (492)
                      |.+.|+++|+|+||||||||||||||||+++|||+|.+|||+|||+||++|||+++|++|+|||+||||++|+|||||||
T Consensus       174 L~~~l~~~f~E~qiyRIDHYLGKemV~nl~~lRf~N~i~~~lWNR~~I~sV~I~fkE~fGtEGRggYfD~~GIIRDvvQN  253 (499)
T KOG0563         174 LSSELGKLFDEEQIYRIDHYLGKELVQNLLVLRFANRIFEPLWNRDYIESVQIVFKEDFGTEGRGGYFDEYGIIRDVVQN  253 (499)
T ss_pred             HHHHHHHHCCCHHEEEEHHHHHHHHHHHHHHHEECCHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99888764572021540155119999654662102034312015003468999970567766756411356509999999


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCC-CCCCCCEEE
Q ss_conf             8999999987185445885899999999997306888112236136521366776873433410147988-664874389
Q gi|254780504|r  243 HLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLG-ISDTETFVA  321 (492)
Q Consensus       243 HllQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~-~S~TeTfaa  321 (492)
                      ||||||||+|||.|.|++|++||+||||||||+||++.+|+    |+|||+++..++.+  ||+|.++|+ +|.||||||
T Consensus       254 HLlQiL~LvAME~P~s~~aedir~eKVkvLks~~~v~~~dv----VlGQY~~~~~g~~~--gy~dd~~V~~dS~tpTfaa  327 (499)
T KOG0563         254 HLLQILTLVAMEKPKSLDAEDIRDEKVKVLKSIRPVDLEDV----VLGQYKSSSDGKVP--GYLDDKTVPKDSLTPTFAA  327 (499)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHE----EEEEECCCCCCCCC--CCCCCCCCCCCCCCCCEEE
T ss_conf             89999999741788789989999999999986167865434----67622056557877--6446888878998851056


Q ss_pred             EEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEE
Q ss_conf             99997085867857775513346885179999985488643766654789856999971796504443312688877445
Q gi|254780504|r  322 IKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKL  401 (492)
Q Consensus       322 ~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~~~~~~N~Lvi~iqP~~~i~l~~~~K~pg~~~~~~  401 (492)
                      +.++|||+||+||||+||+||+|+++++||+|+||.+|+++|.... ++.+|+||||+||+|.|.+++++|.||. ++.+
T Consensus       328 ~~l~Idn~RW~GVPFil~aGKal~e~~~eiriqFk~v~g~lf~~~~-~~~~neLVirvqP~eavylk~~~k~Pgl-~~~~  405 (499)
T KOG0563         328 VALHIDNERWEGVPFILRAGKALNERKAEIRIQFKAVPGGLFSDVR-DCKRNELVIRVQPDEAVYLKINIKQPGL-GMQP  405 (499)
T ss_pred             EEEEECCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC-CCCCCEEEEEECCCCEEEEEEECCCCCC-CCCC
T ss_conf             7776358653688789972644465506999996036876304755-5665269999468800047762378876-6776


Q ss_pred             EEEEEEEEECCCCC-CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             46666553022345-68986248999999879833586989999845884699998873489874579889971889999
Q gi|254780504|r  402 KTTALRICCCSKRI-KRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL  480 (492)
Q Consensus       402 ~~~~l~~~~~~~~~-~~~pdaYe~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a~~l  480 (492)
                      ....+++.|++.+. ...|||||+||+|+|+|||++|+|+||+++||+||||+|+..++..++|.+|++||.||.+|+++
T Consensus       406 ~~~eldl~y~~ry~d~~~pdaYE~Li~d~i~G~~~~FvrsDEl~~aW~iftPlL~~i~~~~~~p~~Y~~GsrGP~~a~e~  485 (499)
T KOG0563         406 DESELDLLYSDRYKDVEIPDAYERLILDAIRGDQTHFVRSDELEAAWKIFTPLLEEIEKKKPKPEPYPYGSRGPKEADEL  485 (499)
T ss_pred             CHHHCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             51221773466556664762499999998748865210228899888754488887513678875557788885669999


Q ss_pred             HHH---CCCCCCC
Q ss_conf             998---1884477
Q gi|254780504|r  481 LQK---DGRRWHN  490 (492)
Q Consensus       481 ~~~---~g~~W~~  490 (492)
                      +++   ++..|..
T Consensus       486 ~~k~~~~~~~w~~  498 (499)
T KOG0563         486 MKKHGTHGYKWPD  498 (499)
T ss_pred             HHHCCCCCCCCCC
T ss_conf             9743678853899


No 8  
>pfam02781 G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain.
Probab=100.00  E-value=0  Score=862.05  Aligned_cols=292  Identities=41%  Similarity=0.698  Sum_probs=282.0

Q ss_pred             HHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             88774775200252803330799999846770245555322001788765589999999871854458858999999999
Q gi|254780504|r  192 MVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKV  271 (492)
Q Consensus       192 l~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHllQlL~lvAMe~P~~~~~~~ir~eK~kv  271 (492)
                      |+|||||++|||+|||+||+|||||++|++||||||+|||++|||||||||||||||||+|||||.++++++||+||+||
T Consensus         1 l~lRFaN~ifeplWN~~~I~~VqIt~~E~~GvegR~~yYd~~GalRDmvQNHllQll~lvaMe~P~~~~~~~ir~eK~kv   80 (294)
T pfam02781         1 LVLRFGNEIFNPLWNRDNIDNVQITFKEPFGTEGRGGYFDEFGIIRDMMQNHLLQILCLVAMEKPVSFSAEDIRDEKVKV   80 (294)
T ss_pred             CCEEECHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             94631234414354725503789986066774715544404672888777099999999974997889999999999999


Q ss_pred             HHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEE
Q ss_conf             973068881122361365213667768734334101479886-6487438999997085867857775513346885179
Q gi|254780504|r  272 LQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGI-SDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISE  350 (492)
Q Consensus       272 lk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~e~~v~~-S~TeTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~e  350 (492)
                      |+|+||+++++|    |||||.+|.++|+.++||++|+||++ |+||||||+|++||||||+||||||||||+|++|+||
T Consensus        81 L~~lr~~~~~~v----vrGQY~~g~~~g~~~~gY~~e~gV~~~S~TeTf~A~kl~IDn~RW~GVPFylRtGK~L~~k~te  156 (294)
T pfam02781        81 LKALRPIDEDDV----VLGQYGAGEDGGKAKPGYLEDPTVPADSNTETFAAGVLHIDNERWEGVPFYLRAGKALNERKAE  156 (294)
T ss_pred             HHCCCCCCHHCE----EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCEEE
T ss_conf             962578974426----9811367777980046765678989999975013678998388207961798706676877379


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCC-CCCCCHHHHHHHHH
Q ss_conf             99998548864376665478985699997179650444331268887744546666553022345-68986248999999
Q gi|254780504|r  351 IVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRI-KRTPDGYERLLMDI  429 (492)
Q Consensus       351 I~i~FK~~p~~~f~~~~~~~~~N~Lvi~iqP~~~i~l~~~~K~pg~~~~~~~~~~l~~~~~~~~~-~~~pdaYe~Ll~D~  429 (492)
                      |+|+||++|+++|...   +++|+|+|+|||+++|.+++++|.||. ++.++++.|+++|.+.+. ...||||||||+||
T Consensus       157 I~I~FK~~p~~~f~~~---~~~N~Lii~iqP~e~i~l~~~~K~PG~-~~~~~~~~L~~~~~~~~~~~~~pdaYErLl~Da  232 (294)
T pfam02781       157 IRIQFKDVPGDIFSEQ---APRNELVIRVQPDEAIYLKMNAKSPGL-SFNTRETELDLTYSDRYKDFKIPEAYERLILDT  232 (294)
T ss_pred             EEEEEECCCCHHCCCC---CCCCEEEEEECCCCEEEEEEECCCCCC-CCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             9999707880112567---789879999679893899996578888-852678755555032357886851599999999


Q ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             87983358698999984588469999887348987457988997188999999818844778
Q gi|254780504|r  430 IHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKDGRRWHNN  491 (492)
Q Consensus       430 i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a~~l~~~~g~~W~~~  491 (492)
                      |+||+|||+|+||||+||+|+||||++|+.++.+|++|++|||||++|++|++++|+.||+-
T Consensus       233 ~~Gd~tlF~r~dEve~aW~ivdpIl~~w~~~~~~~~~Y~~GS~GP~~a~~Ll~~~g~~W~~~  294 (294)
T pfam02781       233 MCGDQSNFVRRDELEAAWKIFTPILHAIEADKVKPEPYPYGSRGPKEADKLLARNGYVWNDK  294 (294)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             76995556887999999987589999997679988787989979899999998609903689


No 9  
>pfam00479 G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain.
Probab=100.00  E-value=0  Score=456.19  Aligned_cols=175  Identities=41%  Similarity=0.704  Sum_probs=165.7

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE
Q ss_conf             99864435667657799999997289875781799998886998899999999998742346799899998985165786
Q gi|254780504|r   14 IIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYIN   93 (492)
Q Consensus        14 VIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y~~   93 (492)
                      ||||||||||+||||||||+|+++|++|+ +++|||+||+++++++|++.|+++++++... +.+++.|++|+++++|++
T Consensus         1 VIfGatGDLa~RKL~PAL~~L~~~g~Lp~-~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~-~~~~~~~~~F~~~~~Y~~   78 (183)
T pfam00479         1 VIFGATGDLAKRKLFPALYNLYREGLLPE-DFRIVGVARSEWSDEDFRERVREALKKFVRT-ELDEEVWEEFLSRLSYVS   78 (183)
T ss_pred             CEECCCCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHCEEEE
T ss_conf             98846248887479999999998099998-9479998478799899999999999975577-579999999997387995


Q ss_pred             CCCCCHHHHHHHHHHHCC-----CCCCCEEEEECCCHHHHHHHHHHHHHHCCCC---CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             467897789988887405-----7678469984069568666777777725876---44357760566789889999999
Q gi|254780504|r   94 LDVEKNYGWELLGKLLDI-----DKTRIRVFYLAMSSAFFGKISQRIHANNLVT---EHTRVVLEKPIGSNLSSAQEIHA  165 (492)
Q Consensus        94 ~d~~~~~~y~~L~~~l~~-----~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~---~~~RiViEKPFG~Dl~SA~eLn~  165 (492)
                      +|++++++|+.|++.++.     ....+|+||||+||++|+.||++|+++||+.   +|+|||||||||+||+||++||+
T Consensus        79 ~d~~~~~~~~~L~~~l~~~~~~~~~~~~rifYLA~pP~~f~~i~~~L~~~~L~~~~~g~~RiVvEKPfG~Dl~Sa~~ln~  158 (183)
T pfam00479        79 GDYDDPEGYERLAERLEELEKKYGTGGNRLFYLALPPSVFGTVAENLKKAGLNKEEGGWTRVVIEKPFGHDLESARELND  158 (183)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             37998036999999999887640888755899955889999999999982899888882479985788897788999999


Q ss_pred             HHHHHCCHHHEEECCCHHHHHHHHH
Q ss_conf             9987389688351242012568777
Q gi|254780504|r  166 ITRKIFKESQIFRIDHYLGKEAVQG  190 (492)
Q Consensus       166 ~l~~~f~E~qiyRIDHYLGKe~vqn  190 (492)
                      .|+++|+|+||||||||||||||||
T Consensus       159 ~l~~~f~E~qIyRIDHYLGKe~VQN  183 (183)
T pfam00479       159 QLASVFDEDQIYRIDHYLGKETVQN  183 (183)
T ss_pred             HHHHHCCHHHEEEECCCCCHHHHCC
T ss_conf             9994479978412333256653168


No 10 
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=96.87  E-value=0.035  Score=35.58  Aligned_cols=49  Identities=16%  Similarity=0.292  Sum_probs=40.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             699840695686667777777258764435776056678988999999999873
Q gi|254780504|r  117 RVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKI  170 (492)
Q Consensus       117 rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~~  170 (492)
                      -+.+.++||+.-..++..+-++|     .-|.+|||++.+++.+++|.+...+.
T Consensus        64 D~v~I~tp~~~H~~~~~~~l~~g-----~~v~~EKP~~~~~~e~~~l~~~a~~~  112 (120)
T pfam01408        64 DAVSVATPPGLHFELALAALEAG-----KHVLVEKPLATTVEEAKELVELAEKK  112 (120)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHC-----CEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             98999087461899999999819-----98999689819999999999999982


No 11 
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.58  E-value=0.24  Score=29.67  Aligned_cols=186  Identities=19%  Similarity=0.177  Sum_probs=98.0

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             98789986443566765779999999728987578179999888699889999999999874234679989999898516
Q gi|254780504|r   10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLI   89 (492)
Q Consensus        10 ~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~   89 (492)
                      ...+-|.|+. --+.+..+|++-.+      +. .+.++++.-.+.                        +..++|.+.+
T Consensus         3 ~irvgiiG~G-~~~~~~~~~~~~~~------~~-~~~~vav~d~~~------------------------~~a~~~a~~~   50 (342)
T COG0673           3 MIRVGIIGAG-GIAGKAHLPALAAL------GG-GLELVAVVDRDP------------------------ERAEAFAEEF   50 (342)
T ss_pred             CCEEEEECCC-HHHHHHHHHHHHHC------CC-CEEEEEEECCCH------------------------HHHHHHHHHC
T ss_conf             3279998987-67888889999738------87-469999964998------------------------9999999981


Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             57864678977899888874057678469984069568666777777725876443577605667898899999999987
Q gi|254780504|r   90 FYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRK  169 (492)
Q Consensus        90 ~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~  169 (492)
                      ..-       ..|..+.+++...+  .=++|.++||.+=..++..--++     +.=|++|||++.+++-|++|-+.-.+
T Consensus        51 ~~~-------~~~~~~~~ll~~~~--iD~V~Iatp~~~H~~~a~~AL~a-----GkhVl~EKPla~t~~ea~~l~~~a~~  116 (342)
T COG0673          51 GIA-------KAYTDLEELLADPD--IDAVYIATPNALHAELALAALEA-----GKHVLCEKPLALTLEEAEELVELARK  116 (342)
T ss_pred             CCC-------CCCCCHHHHHCCCC--CCEEEEECCCHHHHHHHHHHHHC-----CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             997-------45299999945999--98899969806779999999977-----99699928998999999999999997


Q ss_pred             HCCHHHEEECCCHH-HHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCC-HH-HHHHH---HHHHHHHHHHHHH
Q ss_conf             38968835124201-2568777788774775200252803330799999846770-24-55553---2200178876558
Q gi|254780504|r  170 IFKESQIFRIDHYL-GKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGV-ED-RVDYY---NNTGALRDMIQNH  243 (492)
Q Consensus       170 ~f~E~qiyRIDHYL-GKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gv-eg-R~~yy---D~~GaiRDmvQNH  243 (492)
                      .   ..+.-+.|=. --+.+|.+-.+--++.+=       .|-++++...-...- .. +.-+.   +..|++-||--.+
T Consensus       117 ~---g~~l~v~~~~Rf~p~~~~~k~li~~g~iG-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~l~d~giH~  186 (342)
T COG0673         117 A---GVKLMVGFNRRFDPAVQALKELIDSGALG-------EVVSVQASFSRDRPNPPPPPWWRFDRADGGGALLDLGIHD  186 (342)
T ss_pred             C---CCEEEEEEHHHCCHHHHHHHHHHHCCCCC-------CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCH
T ss_conf             5---99499988465498999999998659874-------1599999711465555664322243235884461477249


Q ss_pred             HHHHHHHH
Q ss_conf             99999998
Q gi|254780504|r  244 LLQLLCLV  251 (492)
Q Consensus       244 llQlL~lv  251 (492)
                      +=+++.|+
T Consensus       187 lD~~~~l~  194 (342)
T COG0673         187 LDLLRFLL  194 (342)
T ss_pred             HHHHHHHH
T ss_conf             99999985


No 12 
>PRK10206 putative dehydrogenase; Provisional
Probab=94.46  E-value=0.47  Score=27.54  Aligned_cols=69  Identities=20%  Similarity=0.321  Sum_probs=46.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---CCHHHEEECCC--HHHHHHHH
Q ss_conf             4699840695686667777777258764435776056678988999999999873---89688351242--01256877
Q gi|254780504|r  116 IRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKI---FKESQIFRIDH--YLGKEAVQ  189 (492)
Q Consensus       116 ~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~~---f~E~qiyRIDH--YLGKe~vq  189 (492)
                      .-+.+.++|+.+=...+..--++|     .-|++||||+.+++.|++|-+.-.+.   +-.-|-+|-|-  ..-|+.++
T Consensus        66 id~V~i~tP~~~H~~~a~~al~aG-----khV~~EKP~~~~~~ea~~l~~~a~~~g~~l~v~~nrR~~~~~~~~k~~i~  139 (345)
T PRK10206         66 VKLVVVCTHADSHFEYAKRALEAG-----KNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIE  139 (345)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf             999998799578999999999789-----92898036649899999999999970997999872017949999999866


No 13 
>PRK11579 putative oxidoreductase; Provisional
Probab=94.21  E-value=0.17  Score=30.69  Aligned_cols=109  Identities=15%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCE
Q ss_conf             78998644356676577999999972898757817999988869988999999999987423467998999989851657
Q gi|254780504|r   12 DFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFY   91 (492)
Q Consensus        12 ~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y   91 (492)
                      .+=|.| .|--++..-.|+|-      .+|  ++.+++++-.+  .+.        +..     ++         ..+..
T Consensus         6 rvgiiG-~G~~~~~~h~~~~~------~~~--~~~l~av~d~~--~~~--------~~a-----~~---------~~~~~   52 (346)
T PRK11579          6 RVGLIG-YGYASKTFHAPLIA------GTP--GLELAAVSSSD--ETK--------VKA-----DW---------PTVTV   52 (346)
T ss_pred             EEEEEC-CCHHHHHHHHHHHH------CCC--CEEEEEEECCC--HHH--------HHC-----CC---------CCCCE
T ss_conf             599993-62999999999996------299--91999997989--999--------950-----25---------89953


Q ss_pred             EECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             8646789778998888740576784699840695686667777777258764435776056678988999999999873
Q gi|254780504|r   92 INLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKI  170 (492)
Q Consensus        92 ~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~~  170 (492)
                          +++   |   .++++..+  .=+.|.++|+.+=..++...-++|     .-|.+|||+..+++.|++|-+.-.+.
T Consensus        53 ----~~~---~---~~ll~~~~--id~V~i~tp~~~H~~~~~~al~aG-----khv~~EKP~a~~~~~a~~l~~~a~~~  114 (346)
T PRK11579         53 ----VSE---P---KHLFNDPN--IDLIVIPTPNDTHFPLAKAALEAG-----KHVVVDKPFTVTLSQARELDALAKSL  114 (346)
T ss_pred             ----ECC---H---HHHHCCCC--CCEEEECCCCHHHHHHHHHHHHCC-----CCEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             ----899---9---99945999--999999799678999999999879-----94895387678799999999999872


No 14 
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=79.70  E-value=4.9  Score=20.22  Aligned_cols=78  Identities=19%  Similarity=0.160  Sum_probs=44.2

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCE
Q ss_conf             78998644356676577999999972898757817999988869988999999999987423467998999989851657
Q gi|254780504|r   12 DFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFY   91 (492)
Q Consensus        12 ~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y   91 (492)
                      ||.|.||||.+-++ +...|   ...      +..+...+|+.-.           ..                ......
T Consensus         1 TIlVtGATG~iG~~-v~~~L---~~~------g~~v~~~~R~~~~-----------~~----------------~~~~~~   43 (285)
T TIGR03649         1 TILLTGGTGKTASR-IARLL---QAA------SVPFLVASRSSSS-----------SA----------------GPNEKH   43 (285)
T ss_pred             CEEEECCCCHHHHH-HHHHH---HHC------CCCEEEEECCHHH-----------CC----------------CCCCCE
T ss_conf             98999899818999-99999---868------9978999588566-----------46----------------666753


Q ss_pred             EECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHH
Q ss_conf             86467897789988887405767846998406956
Q gi|254780504|r   92 INLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSA  126 (492)
Q Consensus        92 ~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~  126 (492)
                      +++|+.+++++.......+.-....-.+||..|+.
T Consensus        44 v~~d~~d~~~~~~a~~~~d~~~~~v~~v~l~~p~~   78 (285)
T TIGR03649        44 VKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             68644481148889763532312741899838998


No 15 
>KOG0890 consensus
Probab=79.48  E-value=4.7  Score=20.31  Aligned_cols=84  Identities=25%  Similarity=0.319  Sum_probs=59.7

Q ss_pred             HHHHHHHHHH-HHHHCCCCCHH-HHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             1256877778-87747752002-528033307999998467702455553220017887655899999998718544588
Q gi|254780504|r  183 LGKEAVQGLM-VFRFANTFYES-LWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLCLVAMEMPPSVE  260 (492)
Q Consensus       183 LGKe~vqnil-~lRFaN~~~e~-~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHllQlL~lvAMe~P~~~~  260 (492)
                      ++.|.-+++. .+||-|.-+.+ .|+.-.=..+.|       .+++ ..=++.+.++|-+|||++-+++..-++.   ++
T Consensus       821 ~~~e~~~~~~ell~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~t~~~~e~~~~fl~~~llgil~~f~~~l---~~  889 (2382)
T KOG0890         821 LISETFALLVELLRFYNNNFTPEKRKFSSRKCDFI-------DEDI-RTLISSELFQDFLQNHLLGILAVFSSRL---LE  889 (2382)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HCCC-HHCCHHHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_conf             87527889999999870267588875655400333-------1130-0001289999998999999999987750---47


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             58999999999973068
Q gi|254780504|r  261 AKSIKNEKIKVLQALQM  277 (492)
Q Consensus       261 ~~~ir~eK~kvlk~~r~  277 (492)
                      +..+..+|.++++++.-
T Consensus       890 ~~~~~~~k~~tl~~I~~  906 (2382)
T KOG0890         890 PSTIIEQKKKTLKGIKK  906 (2382)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             62279999999971899


No 16 
>KOG2741 consensus
Probab=79.34  E-value=5  Score=20.14  Aligned_cols=184  Identities=17%  Similarity=0.161  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEECCCCCHHH
Q ss_conf             66765779999999728987578179999888699889999999999874234679989999898516578646789778
Q gi|254780504|r   22 LAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYG  101 (492)
Q Consensus        22 LA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y~~~d~~~~~~  101 (492)
                      +..|+..-||.      .+|+.++.|++++-...                        +...+|+++..+-  ...--.+
T Consensus        16 ~ia~~f~~al~------~~p~s~~~Ivava~~s~------------------------~~A~~fAq~~~~~--~~k~y~s   63 (351)
T KOG2741          16 RIARDFVRALH------TLPESNHQIVAVADPSL------------------------ERAKEFAQRHNIP--NPKAYGS   63 (351)
T ss_pred             HHHHHHHHHHC------CCCCCCCEEEEEECCCH------------------------HHHHHHHHHCCCC--CCCCCCC
T ss_conf             77899999721------47545827999965527------------------------8899999865999--8742557


Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHEEECCC
Q ss_conf             99888874057678469984069568666777777725876443577605667898899999999987389688351242
Q gi|254780504|r  102 WELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDH  181 (492)
Q Consensus       102 y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~~f~E~qiyRIDH  181 (492)
                      |+.|.+    +.. .-+.|+++|-..-..++.-+...+-     -|.+|||...+.+-+++|-+.-.+.    -+|-+|-
T Consensus        64 yEeLak----d~~-vDvVyi~~~~~qH~evv~l~l~~~K-----~VL~EKPla~n~~e~~~iveaA~~r----gv~~meg  129 (351)
T KOG2741          64 YEELAK----DPE-VDVVYISTPNPQHYEVVMLALNKGK-----HVLCEKPLAMNVAEAEEIVEAAEAR----GVFFMEG  129 (351)
T ss_pred             HHHHHC----CCC-CCEEEECCCCCCHHHHHHHHHHCCC-----CEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEE
T ss_conf             998824----987-6879967998008999999997599-----5786565538899999999999976----9488764


Q ss_pred             HHH--HHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCC-----CHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf             012--56877778877477520025280333079999984677-----024555-53220017887655899999998--
Q gi|254780504|r  182 YLG--KEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIG-----VEDRVD-YYNNTGALRDMIQNHLLQLLCLV--  251 (492)
Q Consensus       182 YLG--Ke~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~g-----vegR~~-yyD~~GaiRDmvQNHllQlL~lv--  251 (492)
                      .-+  -+.++-+--+=+ +..|      --|.+|+|++.=.+-     ...|.. +-++-|++-|+.+=-+ |.--++  
T Consensus       130 ~~~R~~P~~~~lke~l~-~~~~------Gdvk~v~~~~~f~~~~~~l~~~~r~~~~~~g~G~l~D~g~Y~i-~~~~~~~~  201 (351)
T KOG2741         130 LWWRFFPRYAKLKELLS-SGVL------GDVKSVEVEFGFPFPEDELPHKSRLRTGLLGGGALGDLGIYPI-QAALWVNN  201 (351)
T ss_pred             EEEECCCHHHHHHHHHH-CCCC------CCCEEEEEECCCCCCHHHCCCCCCHHEECCCCCEEHHHHHHHH-HHHHHHHH
T ss_conf             44210738999999971-2655------5624899964777511211343210000026752006489888-88999998


Q ss_pred             HCCCCCCC
Q ss_conf             71854458
Q gi|254780504|r  252 AMEMPPSV  259 (492)
Q Consensus       252 AMe~P~~~  259 (492)
                      .=++|...
T Consensus       202 f~~~p~~~  209 (351)
T KOG2741         202 FQEPPEVI  209 (351)
T ss_pred             HCCCCCEE
T ss_conf             06996044


No 17 
>KOG0946 consensus
Probab=74.27  E-value=3.7  Score=21.06  Aligned_cols=113  Identities=19%  Similarity=0.340  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCC-CCHHHHCCCCEEEEE-------EEEEECCCCHHHHHH
Q ss_conf             899999999987389688351242012568777788774775-200252803330799-------999846770245555
Q gi|254780504|r  158 SSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANT-FYESLWNNKYIDHVQ-------ITTAETIGVEDRVDY  229 (492)
Q Consensus       158 ~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~-~~e~~WNr~~I~~Vq-------It~~E~~gvegR~~y  229 (492)
                      +--.-||..|...-.-.++||=+-|+-+=. -=+..|-|.+. .|  -|+..-|.+|.       .++.-+--.+.    
T Consensus       231 DCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~-klL~~f~~~d~Ev~--~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~----  303 (970)
T KOG0946         231 DCLILLNNLLKNNISNQNFFREGSYIPRLL-KLLSVFEFGDGEVF--GWSTQRVQNVIEALQIVRSLVSPGNTSSI----  303 (970)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHCCCCHHHHH-HHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCHHH----
T ss_conf             999999999861754156776245177887-40571001575102--55188888999999999986189983777----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCC
Q ss_conf             32200178876558999999987185445885899999999997306888112236136521366
Q gi|254780504|r  230 YNNTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQS  294 (492)
Q Consensus       230 yD~~GaiRDmvQNHllQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~  294 (492)
                        ..-+-+=|+|||+|+.||.++|-+-   -+.+|+.+-+-        ...+    +|||-|.+
T Consensus       304 --~~q~qk~l~ss~ll~~Lc~il~~~~---vp~dIltesii--------tvAe----vVRgn~~n  351 (970)
T KOG0946         304 --THQNQKALVSSHLLDVLCTILMHPG---VPADILTESII--------TVAE----VVRGNARN  351 (970)
T ss_pred             --HHHHHHHHHHCCHHHHHHHHHCCCC---CCHHHHHHHHH--------HHHH----HHHHCHHH
T ss_conf             --8899999987204999999983789---80767789999--------9999----99704677


No 18 
>PRK05989 cobN cobaltochelatase; Reviewed
Probab=65.61  E-value=10  Score=17.93  Aligned_cols=99  Identities=15%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHCCCCCHHHHCCCC--EEEEEEEEEECCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCC
Q ss_conf             687777887747752002528033--307999998467702455-55322001788765589999999871----85445
Q gi|254780504|r  186 EAVQGLMVFRFANTFYESLWNNKY--IDHVQITTAETIGVEDRV-DYYNNTGALRDMIQNHLLQLLCLVAM----EMPPS  258 (492)
Q Consensus       186 e~vqnil~lRFaN~~~e~~WNr~~--I~~VqIt~~E~~gvegR~-~yyD~~GaiRDmvQNHllQlL~lvAM----e~P~~  258 (492)
                      +++-.||.|==    .+|+|+...  |.-++|.=.|++|== |. --.--+|..||++.|-+--|=.-|.|    ++|..
T Consensus       912 ~~iAqiL~LlG----VrPvWd~~~~RV~g~eiIPl~eLgRP-RIDVtvriSG~fRD~Fp~~i~LlD~Av~~vA~ldEp~~  986 (1251)
T PRK05989        912 DDIAQALALLG----VRPVWDDGSRRVTDFEIIPLAELGRP-RIDVTLRISGFFRDAFPNLMRLFDDAVRAVAALDEPEE  986 (1251)
T ss_pred             HHHHHHHHHHC----CCCCCCCCCCCEEEEEEECHHHCCCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             62999999828----72011489983201376068893999-74799851316676568999999999999983799844


Q ss_pred             CCH--HHHHHHHHHHH------------HHHCCCCHHHCCCCEEEECCCCCC
Q ss_conf             885--89999999999------------730688811223613652136677
Q gi|254780504|r  259 VEA--KSIKNEKIKVL------------QALQMITPENVQKLTVRGQYQSGI  296 (492)
Q Consensus       259 ~~~--~~ir~eK~kvl------------k~~r~~~~~~v~~~~v~GQY~~~~  296 (492)
                      .+.  ...+.+..+..            ...|.+....       |.|.+|.
T Consensus       987 ~N~vr~h~~~~~~~l~~~G~~~~~A~~~a~~RIFg~~p-------G~YGaGv 1031 (1251)
T PRK05989        987 DNPVRAHVRAELAELGARGLDAAEARRRATLRIFGSKP-------GAYGAGL 1031 (1251)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEECCCC-------CCHHHHH
T ss_conf             27898989999999985589867787544350604999-------8423528


No 19 
>pfam02514 CobN-Mg_chel CobN/Magnesium Chelatase. This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN is implicated in the conversion of hydrogenobyrinic acid a,c-diamide to cobyrinic acid. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis.
Probab=62.10  E-value=9  Score=18.30  Aligned_cols=97  Identities=20%  Similarity=0.334  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHCCCCCHHHHCC-CCEEEEEEEEEECCCCHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHC-CCCC
Q ss_conf             6877778877477520025280-333079999984677024555---532200178876558999999---9871-8544
Q gi|254780504|r  186 EAVQGLMVFRFANTFYESLWNN-KYIDHVQITTAETIGVEDRVD---YYNNTGALRDMIQNHLLQLLC---LVAM-EMPP  257 (492)
Q Consensus       186 e~vqnil~lRFaN~~~e~~WNr-~~I~~VqIt~~E~~gvegR~~---yyD~~GaiRDmvQNHllQlL~---lvAM-e~P~  257 (492)
                      +++-.||.|==    .+|+|+. .-|..|+|.=.|++|   |-.   ----+|..|||+.|-+--|=-   ++|. +.|.
T Consensus       739 ~~iaqiL~LlG----VrPvwd~~grV~g~e~IPl~eLg---RPRIDV~v~iSG~fRD~fp~~i~LlD~Av~~va~ldEp~  811 (1064)
T pfam02514       739 EDIAQILALLG----VRPVWDASGRVTGVELIPLEELG---RPRIDVTVRISGLFRDAFPNLIELIDEAVRLVAALDEPD  811 (1064)
T ss_pred             HHHHHHHHHCC----CEEEECCCCCCCCEEEECHHHCC---CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             75999999838----70556698966631775689929---998679983350368778999999999999997389983


Q ss_pred             CCCH--HHHHHH------------HHHHHHHHCCCCHHHCCCCEEEECCCCCC
Q ss_conf             5885--899999------------99999730688811223613652136677
Q gi|254780504|r  258 SVEA--KSIKNE------------KIKVLQALQMITPENVQKLTVRGQYQSGI  296 (492)
Q Consensus       258 ~~~~--~~ir~e------------K~kvlk~~r~~~~~~v~~~~v~GQY~~~~  296 (492)
                      ..+.  ...+..            ...-+...|.+.+..       |.|.+|.
T Consensus       812 e~N~vr~h~~~~~~~l~~~G~~~~~A~~~A~~RIFg~~p-------G~YGtGv  857 (1064)
T pfam02514       812 EMNYVRKHSLALEAELLEEGYDEEEARELATARVFGSAP-------GAYGAGV  857 (1064)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEECCCC-------CCCHHHH
T ss_conf             205899999999999986589856677651141403899-------8500328


No 20 
>pfam02446 Glyco_hydro_77 4-alpha-glucanotransferase. These enzymes EC:2.4.1.25 transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan.
Probab=55.39  E-value=3.2  Score=21.51  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=14.8

Q ss_pred             HHHHHHHCCHHHEEECCCHHHHH
Q ss_conf             99998738968835124201256
Q gi|254780504|r  164 HAITRKIFKESQIFRIDHYLGKE  186 (492)
Q Consensus       164 n~~l~~~f~E~qiyRIDHYLGKe  186 (492)
                      -+.|...++-=.++||||++|=.
T Consensus       270 ~~rl~~~~~~~d~lRIDH~~Gf~  292 (494)
T pfam02446       270 IERLRAALKYFDALRIDHFRGFF  292 (494)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999865830022276664


No 21 
>COG5649 Uncharacterized conserved protein [Function unknown]
Probab=54.31  E-value=16  Score=16.59  Aligned_cols=30  Identities=17%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             EECCCCCCCCEEE-----EEECCCCCCCEEEEEEEEEC
Q ss_conf             9708586785777-----55133468851799999854
Q gi|254780504|r  325 NIDNPRWSGIPFY-----LRTGKYLAKHISEIVIALKP  357 (492)
Q Consensus       325 ~idn~RW~gVPF~-----lrtGK~l~~k~~eI~i~FK~  357 (492)
                      -+..|.|.|+|||     +.||-.+   +..|.++|-+
T Consensus        47 v~e~vKWrg~Pvweh~g~ictge~y---k~vvK~tFak   81 (132)
T COG5649          47 VHEAVKWRGSPVWEHDGWICTGECY---KGVVKVTFAK   81 (132)
T ss_pred             HHHEEEECCCCCCCCCCEEEEEEEE---EEEEEEEEEC
T ss_conf             5550352576320377569840345---2577777742


No 22 
>PRK12321 cobN cobaltochelatase; Reviewed
Probab=53.21  E-value=10  Score=17.85  Aligned_cols=129  Identities=16%  Similarity=0.244  Sum_probs=68.3

Q ss_pred             CCCCCCH----------HHHHHHHHHHHHHCCHHHEEECCC--HH---------------HHHHHHHHHHHHHCCCCCHH
Q ss_conf             5667898----------899999999987389688351242--01---------------25687777887747752002
Q gi|254780504|r  151 KPIGSNL----------SSAQEIHAITRKIFKESQIFRIDH--YL---------------GKEAVQGLMVFRFANTFYES  203 (492)
Q Consensus       151 KPFG~Dl----------~SA~eLn~~l~~~f~E~qiyRIDH--YL---------------GKe~vqnil~lRFaN~~~e~  203 (492)
                      -|=|+|+          .+|-++...+.+.+-+..  +=||  |.               |=+++-.+|.|    .=.+|
T Consensus       726 LPTGRNfys~Dpr~iPT~aAw~~G~~~A~~ll~~y--~~~~G~yP~~v~~~lWgt~tmRt~G~~iAq~L~L----lGVrP  799 (1101)
T PRK12321        726 LPTGRNLYTIDPRAVPTRAAHAQGVKAAEELLRRH--LQDHGDWPRGLVVDLWGSATMRTGGEEFAMALAL----MGVRP  799 (1101)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEEEEHHHHHHCCHHHHHHHHH----CCCCC
T ss_conf             78887654658232778999999999999999999--9872998503788886354443156759999997----19721


Q ss_pred             HHC--CCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             528--0333079999984677024555532200178876558999999---98-71854458858999999999973068
Q gi|254780504|r  204 LWN--NKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLC---LV-AMEMPPSVEAKSIKNEKIKVLQALQM  277 (492)
Q Consensus       204 ~WN--r~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHllQlL~---lv-AMe~P~~~~~~~ir~eK~kvlk~~r~  277 (492)
                      +|+  ..-|.-++|.=.|++|==-=---.--+|..||++.|-+--+=.   ++ +-|+|...++  ++.  ..-....|.
T Consensus       800 vWd~~s~RV~g~eiIPl~eLgRPRIDVt~riSG~FRD~Fp~~i~Lld~Av~~vA~ldE~~~~Np--~~~--a~~~~~~RI  875 (1101)
T PRK12321        800 VWDHASERVTGIEVLPLALLGRPRIDVTLRVSGLFRDVFPALIALFDQAARAVAARDEADDDNP--LAA--RRGERAARV  875 (1101)
T ss_pred             CCCCCCCCEEEEEEECHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HHH--HHCCCCCCC
T ss_conf             4447888542247606889299987799961404787788999999999999983469954289--988--624575423


Q ss_pred             CCHHHCCCCEEEECCCCCC
Q ss_conf             8811223613652136677
Q gi|254780504|r  278 ITPENVQKLTVRGQYQSGI  296 (492)
Q Consensus       278 ~~~~~v~~~~v~GQY~~~~  296 (492)
                      +.+..       |.|.+|.
T Consensus       876 Fg~~p-------G~YGaGv  887 (1101)
T PRK12321        876 FGPAP-------GSYGAGA  887 (1101)
T ss_pred             CCCCC-------CCHHHHH
T ss_conf             04999-------8554628


No 23 
>pfam05542 DUF760 Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins.
Probab=52.89  E-value=7.7  Score=18.79  Aligned_cols=16  Identities=44%  Similarity=0.563  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8876558999999987
Q gi|254780504|r  237 RDMIQNHLLQLLCLVA  252 (492)
Q Consensus       237 RDmvQNHllQlL~lvA  252 (492)
                      -+||||||..||..-+
T Consensus       121 lEMI~eHL~~ilG~r~  136 (328)
T pfam05542       121 LEMIQEHLSAILGLRV  136 (328)
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999999957532


No 24 
>pfam01474 DAHP_synth_2 Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyse the first step of the shikimate pathway.
Probab=52.71  E-value=17  Score=16.42  Aligned_cols=16  Identities=19%  Similarity=-0.035  Sum_probs=6.5

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             9988999999999987
Q gi|254780504|r   55 MTVESYRSFVDKELQR   70 (492)
Q Consensus        55 ~~~e~fr~~v~~~l~~   70 (492)
                      |.|.+-.+.+.+.|..
T Consensus        18 ypD~~~l~~v~~~L~~   33 (437)
T pfam01474        18 YPDPAALAAVLAELAS   33 (437)
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             9599999999999961


No 25 
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771    This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=51.98  E-value=15  Score=16.70  Aligned_cols=97  Identities=25%  Similarity=0.339  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC----CCCCCCC-----HHHHHHHH-HHHHH-HHCCCCHHHCCCCEEEECCCCCCCCCE
Q ss_conf             2001788765589999999871----8544588-----58999999-99997-306888112236136521366776873
Q gi|254780504|r  232 NTGALRDMIQNHLLQLLCLVAM----EMPPSVE-----AKSIKNEK-IKVLQ-ALQMITPENVQKLTVRGQYQSGIINGI  300 (492)
Q Consensus       232 ~~GaiRDmvQNHllQlL~lvAM----e~P~~~~-----~~~ir~eK-~kvlk-~~r~~~~~~v~~~~v~GQY~~~~~~~~  300 (492)
                      =+||.||+++|=|=+|=-+|=|    |+|..++     +.+...|- +.|=. |.|.++..+       |-|.+.-.+ -
T Consensus      1087 lSGIFRD~f~~q~~LLD~avk~AA~ADEP~emNfvRKHaL~~~~e~Gi~~e~Aa~R~FsNA~-------G~YGsnVN~-~ 1158 (1384)
T TIGR02025      1087 LSGIFRDLFVNQMELLDEAVKLAAKADEPLEMNFVRKHALAQAEEGGIDVEEAAARVFSNAP-------GSYGSNVND-L 1158 (1384)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCC-------CCCCCCCCC-C
T ss_conf             28448778999999999999998512778446616788999997459767888622046889-------875533035-2


Q ss_pred             ECCC-CCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEE
Q ss_conf             4334-1014798866487438999997085867857775513346885179
Q gi|254780504|r  301 PVKG-YLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISE  350 (492)
Q Consensus       301 ~v~g-Y~~e~~v~~S~TeTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~e  350 (492)
                      -+-| .-+|.    -..+||.-=|-|=          |=+.+|+|-+...|
T Consensus      1159 vE~s~WE~e~----eL~d~f~~RksFA----------Yg~~~~gmm~~~~E 1195 (1384)
T TIGR02025      1159 VENSAWEDEG----ELADTFIKRKSFA----------YGRQGKGMMEQKPE 1195 (1384)
T ss_pred             EECCCCCCHH----HHHHHHHHCCEEE----------CCCCCCCHHHCCHH
T ss_conf             2268888766----7987756403022----------07887871000358


No 26 
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=50.99  E-value=18  Score=16.24  Aligned_cols=98  Identities=11%  Similarity=0.069  Sum_probs=51.9

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE
Q ss_conf             89986443566765779999999728987578179999888699889999999999874234679989999898516578
Q gi|254780504|r   13 FIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYI   92 (492)
Q Consensus        13 lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y~   92 (492)
                      +.|+||||.+-+. +..+|-   .      .++++.+..|..-+. ..     +.+.                ...+..+
T Consensus         1 IlV~GatG~iG~~-vv~~L~---~------~g~~Vr~l~R~~~~~-~~-----~~l~----------------~~gve~v   48 (232)
T pfam05368         1 ILVFGATGYQGGS-VVRASL---K------AGHPVRALVRDPKSE-LA-----KSLK----------------AAGVELV   48 (232)
T ss_pred             EEEECCCHHHHHH-HHHHHH---H------CCCCEEEEECCCCHH-HH-----HHHH----------------HCCCEEE
T ss_conf             0998968289999-999998---5------899389997187366-56-----6664----------------1798899


Q ss_pred             ECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH--HHHHHHHHHCCCCCCCEEEE
Q ss_conf             6467897789988887405767846998406956866--67777777258764435776
Q gi|254780504|r   93 NLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFG--KISQRIHANNLVTEHTRVVL  149 (492)
Q Consensus        93 ~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~--~i~~~L~~~~l~~~~~RiVi  149 (492)
                      ++|++++++.   .+.++.   ...+ |+.+|+..-.  ....++-++....+=.|+|.
T Consensus        49 ~gD~~d~~sl---~~al~g---vd~v-~~~~~~~~~~~~~~~~~~~~AA~~aGVk~~V~  100 (232)
T pfam05368        49 EGDLDDHESL---VEALKG---VDVV-FSVTGFWLSKEIEDGKKLADAAKEAGVKHFIP  100 (232)
T ss_pred             EECCCCHHHH---HHHHCC---CCEE-EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             9068887899---999679---9889-99158874177999999999999739983455


No 27 
>KOG3363 consensus
Probab=49.70  E-value=17  Score=16.26  Aligned_cols=31  Identities=23%  Similarity=0.219  Sum_probs=16.6

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             87578179999888699889999999999874
Q gi|254780504|r   40 ENQISSRIIGICRIKMTVESYRSFVDKELQRY   71 (492)
Q Consensus        40 l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~   71 (492)
                      -|..+..|+|+||...- +..+..|++.++++
T Consensus       109 ePkidlLIvG~Gd~~~p-~~v~~~V~~F~k~~  139 (196)
T KOG3363         109 EPKIDLLIVGCGDKKHP-DKVRPSVRQFVKSH  139 (196)
T ss_pred             CCCCCEEEEECCCCCCC-HHCCHHHHHHHHHH
T ss_conf             77765799944786881-22288899999983


No 28 
>PRK09072 short chain dehydrogenase; Provisional
Probab=49.58  E-value=18  Score=16.09  Aligned_cols=74  Identities=12%  Similarity=0.244  Sum_probs=45.9

Q ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             89898789986443566765779999999728987578179999888699889999999999874234679989999898
Q gi|254780504|r    7 NIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFL   86 (492)
Q Consensus         7 ~~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~   86 (492)
                      ++.+-+.+|-|||+-+-+-     +-..+.     +.+.+++.++|++-..++.    .+.+                ..
T Consensus         2 ~l~~K~vlITGassGIG~a-----~A~~la-----~~G~~vil~~R~~~~L~~~----~~~l----------------~~   51 (262)
T PRK09072          2 DLKDKRVLLTGASGGIGEA-----LAEALC-----AAGARLLLVGRNAEKLEAL----AARP----------------YP   51 (262)
T ss_pred             CCCCCEEEEECCCCHHHHH-----HHHHHH-----HCCCEEEEEECCHHHHHHH----HHHH----------------CC
T ss_conf             9899889994862399999-----999999-----8799899998989999999----9984----------------58


Q ss_pred             HHCCEEECCCCCHHHHHHHHHHHC
Q ss_conf             516578646789778998888740
Q gi|254780504|r   87 SLIFYINLDVEKNYGWELLGKLLD  110 (492)
Q Consensus        87 ~~~~Y~~~d~~~~~~y~~L~~~l~  110 (492)
                      ..+.++.+|+++.++.+.+.+..+
T Consensus        52 ~~~~~~~~Dls~~~~~~~~~~~~~   75 (262)
T PRK09072         52 GRVRWVVADLTSEAGREAVLARAR   75 (262)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             976999971799999999999999


No 29 
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=48.56  E-value=19  Score=15.98  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=55.4

Q ss_pred             HHCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCCCH--------
Q ss_conf             516578646789778998888740576784699840695686667777777-25876443577605667898--------
Q gi|254780504|r   87 SLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHA-NNLVTEHTRVVLEKPIGSNL--------  157 (492)
Q Consensus        87 ~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~-~~l~~~~~RiViEKPFG~Dl--------  157 (492)
                      .++.+++||-.+.+.+....++....  ...+.-|- ..+....|.+-|.. +.+.+.++-+|||--.=.++        
T Consensus        81 ~~I~lieg~s~d~~~~~~v~~~~~~~--~~vlVilD-s~Ht~~hVl~eL~~y~~lv~~GsY~IVeDTii~~~p~~~~~~r  157 (202)
T pfam04989        81 PRITFIQGSSTDPEIIEQVRSLAEPP--HPVLVILD-SDHTHEHVLAELRAYAPLVSEGSYLVVEDTIIEDLPESPFPDR  157 (202)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCC--CCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCC
T ss_conf             87699976856788998899985379--85899964-8865688999999875215768899995762431755667888


Q ss_pred             ------HHHHHHHHHHHHHCCHHHEEECCCHHH
Q ss_conf             ------899999999987389688351242012
Q gi|254780504|r  158 ------SSAQEIHAITRKIFKESQIFRIDHYLG  184 (492)
Q Consensus       158 ------~SA~eLn~~l~~~f~E~qiyRIDHYLG  184 (492)
                            --..++++-|.+.    .=|.||+++-
T Consensus       158 ~w~~gnnP~~Av~eFL~~~----~~F~iD~~~~  186 (202)
T pfam04989       158 PWGKGNNPKTAVTEFLAEH----PEFEIDTAIE  186 (202)
T ss_pred             CCCCCCCHHHHHHHHHHHC----CCCEECCCCC
T ss_conf             6878989799999999878----9938653202


No 30 
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=48.48  E-value=6.3  Score=19.42  Aligned_cols=23  Identities=35%  Similarity=0.379  Sum_probs=15.6

Q ss_pred             HHHHHHHHCCHHHEEECCCHHHH
Q ss_conf             99999873896883512420125
Q gi|254780504|r  163 IHAITRKIFKESQIFRIDHYLGK  185 (492)
Q Consensus       163 Ln~~l~~~f~E~qiyRIDHYLGK  185 (492)
                      --+.|+..++--+++||||+.|-
T Consensus       286 wierlr~~~~~~~~lRIDHf~Gl  308 (520)
T COG1640         286 WIERLRANLKLYGILRIDHFRGL  308 (520)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCH
T ss_conf             99999999875680665100013


No 31 
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=47.26  E-value=20  Score=15.84  Aligned_cols=11  Identities=18%  Similarity=0.537  Sum_probs=6.1

Q ss_pred             CCCHHHHCCCC
Q ss_conf             52002528033
Q gi|254780504|r  199 TFYESLWNNKY  209 (492)
Q Consensus       199 ~~~e~~WNr~~  209 (492)
                      .-++|-|.+.+
T Consensus        76 a~y~P~w~hs~   86 (305)
T PRK10525         76 AKYSPNWSHSN   86 (305)
T ss_pred             CCCCCCCCCCC
T ss_conf             88799755787


No 32 
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=46.68  E-value=20  Score=15.78  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=9.0

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             86248999999879833586989
Q gi|254780504|r  419 PDGYERLLMDIIHANQTLFMGYD  441 (492)
Q Consensus       419 pdaYe~Ll~D~i~Gd~tlF~r~d  441 (492)
                      |+.=+.|+..++.|+...+....
T Consensus       482 P~~~~~L~~~i~~~~~~~~~~~~  504 (1207)
T PRK13405        482 PESVDALREAILGGNASRYGTPA  504 (1207)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCH
T ss_conf             99999999999748854347823


No 33 
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913    dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen.  dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH  ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=46.27  E-value=21  Score=15.74  Aligned_cols=32  Identities=16%  Similarity=0.342  Sum_probs=23.8

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf             789986443566765779999999728987578179999888
Q gi|254780504|r   12 DFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRI   53 (492)
Q Consensus        12 ~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~   53 (492)
                      .|.|+||+|=|++.        |..  .+++.....+.+.|+
T Consensus         1 rilitGa~GQlG~~--------L~~--~l~~~g~~~~~~~~~   32 (317)
T TIGR01214         1 RILITGANGQLGRE--------LVQ--QLSKPGRVVVALTRS   32 (317)
T ss_pred             CEEEECCCCHHHHH--------HHH--HCCCCCCEEEEECCC
T ss_conf             97887387567999--------999--707888278643687


No 34 
>PRK00092 hypothetical protein; Reviewed
Probab=43.26  E-value=23  Score=15.42  Aligned_cols=34  Identities=9%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf             3577605667898899999999987389688351
Q gi|254780504|r  145 TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFR  178 (492)
Q Consensus       145 ~RiViEKPFG~Dl~SA~eLn~~l~~~f~E~qiyR  178 (492)
                      .||.|+||=|-+++-+..+++.+...++.+.++-
T Consensus        35 lrI~ID~~~gv~lddc~~vSr~is~~LD~~d~i~   68 (153)
T PRK00092         35 LRIYIDSDGGITLDDCEDVSRQLSAVLDVEDPIP   68 (153)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999988999189999998899887526365678


No 35 
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=42.38  E-value=23  Score=15.33  Aligned_cols=34  Identities=6%  Similarity=0.075  Sum_probs=21.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCHHHEEECCCHHH
Q ss_conf             5667898899999999987389688351242012
Q gi|254780504|r  151 KPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLG  184 (492)
Q Consensus       151 KPFG~Dl~SA~eLn~~l~~~f~E~qiyRIDHYLG  184 (492)
                      -.||-+.+.+.++-+.+.+.-+-=++.-|--++|
T Consensus       144 sKFGi~~~~~~~~l~~~~~~~~~l~~~GlH~HiG  177 (423)
T cd06842         144 SRFGMPAAEVRTALERLAQLRERVRLVGFHFHLD  177 (423)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             9998999999999999996399983689888648


No 36 
>TIGR00565 trpE_proteo anthranilate synthase component I; InterPro: IPR005257   This family represents anthranilate/para-aminobenzoate synthase component I from proteobacteria and actinobacteria.    This enzyme resembles some other chorismate-binding enzymes, including para-aminobenzoate synthase (pabB) and isochorismate synthase. There is a fairly deep split between two sets, seen in the pattern of gaps as well as in amino acid sequence differences. This group includes proteobacteria such as Escherichia coli and Helicobacter pylori but also the Gram-positive organism Corynebacterium glutamicum. The second group (IPR005256 from INTERPRO) includes eukaryotes, archaea, and most other bacterial lineages; sequences from the second group may resemble pabB more closely than other trpE from this group. ; GO: 0004049 anthranilate synthase activity, 0009058 biosynthetic process.
Probab=42.19  E-value=13  Score=17.25  Aligned_cols=118  Identities=27%  Similarity=0.380  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEE---------CC
Q ss_conf             869988999999999987423467998999989851657864678977899888874057678469984---------06
Q gi|254780504|r   53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYL---------AM  123 (492)
Q Consensus        53 ~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYL---------Ai  123 (492)
                      ...+|+||...| .+|+++++.|++    ++--.+|-+|..+. +.-.+|-.|++    .-+.+=+||+         |=
T Consensus       228 ~N~sD~EF~g~V-~~Lq~~I~~Gei----FQ~VpSRrFsl~Cp-~~LaaYy~LK~----~NPSPYMFy~~D~DFiLFGAS  297 (505)
T TIGR00565       228 ANFSDEEFEGVV-KALQKEIKKGEI----FQVVPSRRFSLECP-EGLAAYYQLKK----SNPSPYMFYMKDEDFILFGAS  297 (505)
T ss_pred             CCCCCCHHHHHH-HHHHHHCCCCCE----EEEEECCEECCCCC-CHHHHHHHHHH----CCCCCCEEEEECCCEEEECCC
T ss_conf             588961156799-999984215855----78840311003366-55479998751----485960323204753554687


Q ss_pred             CHHHH--HHHHHHHHHHCCCCCCCEE---EEECCCCCCHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             95686--6677777772587644357---76056678988999999999873896883512420125687777887747
Q gi|254780504|r  124 SSAFF--GKISQRIHANNLVTEHTRV---VLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFA  197 (492)
Q Consensus       124 PP~~f--~~i~~~L~~~~l~~~~~Ri---ViEKPFG~Dl~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFa  197 (492)
                      |-|.-  .+..+.+.---.  -++|.   =-.=-+-+||+|=-||.            -|.||   ||.-.-||-.=.|
T Consensus       298 PESaLKY~a~~r~~EIYPI--AGtRpRG~da~GniD~dLDsr~Ele------------lr~Dh---KE~aEHlMLVDLA  359 (505)
T TIGR00565       298 PESALKYDALSRQLEIYPI--AGTRPRGKDADGNIDRDLDSRLELE------------LRLDH---KERAEHLMLVDLA  359 (505)
T ss_pred             CCHHHHCCCCCCCEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHH------------HHCCC---HHHHHHHHHHHHH
T ss_conf             0012310312582777035--5788888778889784334466355------------30251---2345556677764


No 37 
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.03  E-value=24  Score=15.29  Aligned_cols=31  Identities=13%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCHHH
Q ss_conf             3577605667898899999999987389688
Q gi|254780504|r  145 TRVVLEKPIGSNLSSAQEIHAITRKIFKESQ  175 (492)
Q Consensus       145 ~RiViEKPFG~Dl~SA~eLn~~l~~~f~E~q  175 (492)
                      .||.++||.|-+++-+.++.+.++..|+.+.
T Consensus        39 lrI~id~~g~v~ldDC~~vSr~is~~LD~ed   69 (153)
T COG0779          39 LRIYIDKEGGVTLDDCADVSRAISALLDVED   69 (153)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             9999679999888999999999898736587


No 38 
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain; InterPro: IPR014145   DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see IPR009187 from INTERPRO), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NheJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This region represents the C-terminal polymerase domain..
Probab=40.90  E-value=23  Score=15.42  Aligned_cols=49  Identities=6%  Similarity=0.032  Sum_probs=34.3

Q ss_pred             EEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCC--CCCEEEEEECCCCCEEEEEE
Q ss_conf             7551334688517999998548864376665478--98569999717965044433
Q gi|254780504|r  337 YLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKI--ETNKLILRLQNNGEIEQFIT  390 (492)
Q Consensus       337 ~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~~~~--~~N~Lvi~iqP~~~i~l~~~  390 (492)
                      ++..=.+|-.=...=+|+|+..-+.+     ...  +|.+|||.|.|.+++.+...
T Consensus        86 ~~~d~~gL~~LvQ~g~lEfH~w~~~~-----~~~P~~PDriVFDLDPgp~~~~~~v  136 (251)
T TIGR02778        86 VIEDLEGLLWLVQMGALEFHIWGARI-----DAPPEKPDRIVFDLDPGPGVAWKLV  136 (251)
T ss_pred             EEECHHHHHHHHHCCCEEEECCCCCC-----CCCCCCCCEEEEECCCCCHHHHHHH
T ss_conf             77168999999872805771788878-----8872488668881588886579999


No 39 
>pfam09861 DUF2088 Uncharacterized conserved protein (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.68  E-value=27  Score=14.94  Aligned_cols=115  Identities=13%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             CCHHHH-HHHHHHHHHHCCCCCCCEEEEECCCC-CCHHHHHHHHHHHHH-HCCHHHEEECCCHH-HHHHHHHHHHHHHCC
Q ss_conf             695686-66777777725876443577605667-898899999999987-38968835124201-256877778877477
Q gi|254780504|r  123 MSSAFF-GKISQRIHANNLVTEHTRVVLEKPIG-SNLSSAQEIHAITRK-IFKESQIFRIDHYL-GKEAVQGLMVFRFAN  198 (492)
Q Consensus       123 iPP~~f-~~i~~~L~~~~l~~~~~RiViEKPFG-~Dl~SA~eLn~~l~~-~f~E~qiyRIDHYL-GKe~vqnil~lRFaN  198 (492)
                      +|...+ +.+.+.|.+.|...+.-.||+  .-| |--.+-.|+...+.+ .+++-+  -|+|.= -++....+=..... 
T Consensus        68 ~p~~~il~~ll~~L~~~Gv~~~~I~iv~--A~G~Hr~~t~eE~~~~lG~~i~~~~~--v~~Hd~~d~~~lv~lG~T~~G-  142 (203)
T pfam09861        68 TPSDIILPLLLEELNAVGIPDEDITILV--ATGTHRPMTEEELKKILGEEVVKRIR--IVNHDADDPDELVYLGTTSRG-  142 (203)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCEEEEE--ECCCCCCCCHHHHHHHHHHHHHCCEE--EEECCCCCHHHCEEECCCCCC-
T ss_conf             8567559999999997599812589998--26879999989999986088663868--995799985783781207999-


Q ss_pred             CCCHHHH-CCCCEEEEEEEEEEC------CCC-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5200252-803330799999846------770-2455553220017887655899
Q gi|254780504|r  199 TFYESLW-NNKYIDHVQITTAET------IGV-EDRVDYYNNTGALRDMIQNHLL  245 (492)
Q Consensus       199 ~~~e~~W-Nr~~I~~VqIt~~E~------~gv-egR~~yyD~~GaiRDmvQNHll  245 (492)
                         .|+| ||..+++=-+..--.      .|- +||-..+=..+-.+-+..||.+
T Consensus       143 ---tpV~inr~~~eaD~~I~~G~I~pH~~aGfsGG~K~i~PGia~~~tI~~nH~~  194 (203)
T pfam09861       143 ---TPVYVNRLVAEADLVILTGFIEPHYFAGFSGGRKSILPGIASYETIMANHSL  194 (203)
T ss_pred             ---CEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf             ---8899846786388689978723434566587663044054788999999876


No 40 
>KOG4128 consensus
Probab=38.38  E-value=23  Score=15.40  Aligned_cols=73  Identities=14%  Similarity=0.291  Sum_probs=51.5

Q ss_pred             EEEECCCCCC--HHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCH
Q ss_conf             7760566789--88999999999873896883512420125687777887747752002528033307999998467702
Q gi|254780504|r  147 VVLEKPIGSN--LSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVE  224 (492)
Q Consensus       147 iViEKPFG~D--l~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gve  224 (492)
                      ||=-|=||+.  .+-.+..|..|.....|=-          +|..|.+.+|-+                          +
T Consensus       160 viPKkcy~~sysT~atrkmN~iL~~KlREfa----------~~Lr~~~~~~~~--------------------------~  203 (457)
T KOG4128         160 VIPKKCYLHSYSTQATRKMNLILKSKLREFA----------SMLRAQFTFNGN--------------------------G  203 (457)
T ss_pred             CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHCCCC--------------------------C
T ss_conf             7847764542103677899999999999999----------999999852788--------------------------9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             4555532200178876558999999987185445885
Q gi|254780504|r  225 DRVDYYNNTGALRDMIQNHLLQLLCLVAMEMPPSVEA  261 (492)
Q Consensus       225 gR~~yyD~~GaiRDmvQNHllQlL~lvAMe~P~~~~~  261 (492)
                      +|.     .-.++.||| |++-++|+..=+||..|+=
T Consensus       204 ~~i-----~~t~~emm~-eiFrviciclg~PPe~FTW  234 (457)
T KOG4128         204 CRI-----PDTIQEMMP-EIFRVICICLGEPPEVFTW  234 (457)
T ss_pred             CCC-----HHHHHHHHH-HHHHHHHHHCCCCCCEEEE
T ss_conf             821-----279999999-9999974104889650147


No 41 
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185   Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=38.35  E-value=27  Score=14.91  Aligned_cols=50  Identities=30%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             EEEECCCCH----HHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             899864435----6676577999999972898757-817999988869988999999999987
Q gi|254780504|r   13 FIIFGGTGD----LAKRKLFPALYNNYTNREENQI-SSRIIGICRIKMTVESYRSFVDKELQR   70 (492)
Q Consensus        13 lVIFGATGD----LA~RKL~PALf~L~~~~~l~~~-~~~IiG~aR~~~~~e~fr~~v~~~l~~   70 (492)
                      +=|+|||||    ||-|        |..+|++|+- +-.||=-+|+.=.-++--....+.+..
T Consensus         3 IAvLGGTGdqG~GLALR--------lA~~glmPeG~~~~iIIGSR~~EkA~EaA~ka~e~l~~   57 (233)
T TIGR01915         3 IAVLGGTGDQGKGLALR--------LAKAGLMPEGVDNEIIIGSRDKEKAEEAAAKALEELGD   57 (233)
T ss_pred             EEEECCCCCHHHHHHHH--------HHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             78844888402569999--------98707787877755577048845699999999999970


No 42 
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=38.10  E-value=27  Score=14.88  Aligned_cols=55  Identities=18%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             87899864435667657799999997289875781799998886998899999999
Q gi|254780504|r   11 SDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDK   66 (492)
Q Consensus        11 ~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~   66 (492)
                      ..+|-|+||===.=|+-+|.|=.+|..-.-...++.||++++.+ +.+++.+.+.+
T Consensus        19 ~vll~FWAsWC~pCr~e~P~L~~ly~~~~~~~~~~~vi~is~D~-~~~~~~~~~~~   73 (132)
T cd02964          19 TVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-SEESFNEYFSE   73 (132)
T ss_pred             EEEEEEECCCCHHHHHHCHHHHHHHHHHHHCCCCEEEEEEECCC-CHHHHHHHHHH
T ss_conf             89999984568204310589999999987418868999976789-99999999996


No 43 
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=38.09  E-value=27  Score=14.88  Aligned_cols=31  Identities=35%  Similarity=0.568  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             67657799999997289875781799998886998899999999
Q gi|254780504|r   23 AKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDK   66 (492)
Q Consensus        23 A~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~   66 (492)
                      |...|=|||-    .|     .+++||..    +.++||.++..
T Consensus       290 AaNlLKPaLa----rG-----elr~IgAT----T~~EYrk~iEk  320 (852)
T TIGR03346       290 AGNMLKPALA----RG-----ELHCIGAT----TLDEYRKYIEK  320 (852)
T ss_pred             HHHHHHHHHH----CC-----CCEEEEEC----CHHHHHHHHHC
T ss_conf             6777437874----79-----85599827----89999988322


No 44 
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=37.97  E-value=18  Score=16.16  Aligned_cols=10  Identities=40%  Similarity=0.793  Sum_probs=3.5

Q ss_pred             CCCHHHHHHH
Q ss_conf             2420125687
Q gi|254780504|r  179 IDHYLGKEAV  188 (492)
Q Consensus       179 IDHYLGKe~v  188 (492)
                      +--||||=.+
T Consensus       206 V~~yLgkiS~  215 (297)
T COG4785         206 VEFYLGKISE  215 (297)
T ss_pred             HHHHHHHCCH
T ss_conf             9999704039


No 45 
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155   This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase  and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=37.70  E-value=15  Score=16.66  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=16.5

Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             878998644356676577999999972898757817999
Q gi|254780504|r   11 SDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIG   49 (492)
Q Consensus        11 ~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG   49 (492)
                      -|+||+||||= .|-=++=||-     +.+|. +=|||.
T Consensus       159 knIii~GGTgS-GKTTf~kal~-----~~IP~-~ER~iT  190 (328)
T TIGR02788       159 KNIIISGGTGS-GKTTFLKALV-----KEIPK-DERLIT  190 (328)
T ss_pred             CEEEEEECCCC-HHHHHHHHHH-----HCCCC-CCCEEE
T ss_conf             91999906897-1899999997-----32762-252788


No 46 
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113   6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket .    This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=37.05  E-value=20  Score=15.81  Aligned_cols=15  Identities=7%  Similarity=-0.037  Sum_probs=6.1

Q ss_pred             CEEEEEEECCCCCHH
Q ss_conf             817999988869988
Q gi|254780504|r   44 SSRIIGICRIKMTVE   58 (492)
Q Consensus        44 ~~~IiG~aR~~~~~e   58 (492)
                      .|.|.-+-|+.--+|
T Consensus        22 GF~V~VyNRt~~Ktd   36 (480)
T TIGR00873        22 GFTVAVYNRTPEKTD   36 (480)
T ss_pred             CCCEEEEECCHHHHH
T ss_conf             982799726847999


No 47 
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=36.62  E-value=28  Score=14.72  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             98987899864435667657799999997289875781799998886998899999999998742346799899998985
Q gi|254780504|r    8 IHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLS   87 (492)
Q Consensus         8 ~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~   87 (492)
                      +..-+.+|-||+|.+-+-     +-..++     +.+..++.++|++-..++    +.+.+..              .-.
T Consensus         3 L~~Kv~lITGgs~GIG~a-----~a~~la-----~~G~~V~~~~r~~~~l~~----~~~~~~~--------------~~~   54 (246)
T PRK05653          3 LQGKTALVTGASRGIGRA-----IALRLA-----ADGARVVIYDSNEEAAEA----LAEELRA--------------AGG   54 (246)
T ss_pred             CCCCEEEEECCCCHHHHH-----HHHHHH-----HCCCEEEEEECCHHHHHH----HHHHHHH--------------CCC
T ss_conf             899889993897589999-----999999-----879999999799999999----9999996--------------599


Q ss_pred             HCCEEECCCCCHHHHHHHHHHH
Q ss_conf             1657864678977899888874
Q gi|254780504|r   88 LIFYINLDVEKNYGWELLGKLL  109 (492)
Q Consensus        88 ~~~Y~~~d~~~~~~y~~L~~~l  109 (492)
                      .+.++++|++++++.+.+-+.+
T Consensus        55 ~~~~~~~Dl~~~~~~~~~~~~~   76 (246)
T PRK05653         55 EAALLVFDVTDEAAVRALIEAA   76 (246)
T ss_pred             CEEEEEEECCCHHHHHHHHHHH
T ss_conf             4899997289999999999999


No 48 
>pfam07505 Gp37_Gp68 Phage protein Gp37/Gp68. Homologues of phage proteins Gp37 and Gp68 are found in several bacteria.
Probab=36.43  E-value=18  Score=16.20  Aligned_cols=40  Identities=23%  Similarity=0.414  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCH-------HHHHHHHHHCCCCCCC
Q ss_conf             84699998873489874579889971-------8899999981884477
Q gi|254780504|r  449 WSDSILKSWQIINQKVDYYAAGTWGP-------DQSDVLLQKDGRRWHN  490 (492)
Q Consensus       449 ivdpiL~~~~~~~~~~~~Y~~GS~GP-------~~a~~l~~~~g~~W~~  490 (492)
                      ++..|.+.++...++.+.=.-|+|||       +++-++|  +|+.|.+
T Consensus       205 Wvr~irdQC~~agvpFfFKQwG~~~~~~~~~~kk~~Gr~l--dg~~~~~  251 (253)
T pfam07505       205 WVRDIRDQCTAAGVPFFFKQWGGHGKDLVGRGKKATGREL--DGRTWDE  251 (253)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC--CCEECCC
T ss_conf             9999999999809988998579998654434743445635--8806375


No 49 
>CHL00194 ycf39 Ycf39; Provisional
Probab=36.40  E-value=29  Score=14.70  Aligned_cols=105  Identities=10%  Similarity=0.067  Sum_probs=53.6

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCE
Q ss_conf             78998644356676577999999972898757817999988869988999999999987423467998999989851657
Q gi|254780504|r   12 DFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFY   91 (492)
Q Consensus        12 ~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y   91 (492)
                      ++.|+||||-+-+. +...|   ..      .+..+.+..|++-...        .++    .            ..+..
T Consensus         2 ~ILV~GATG~lGr~-vVr~L---l~------~G~~Vr~lvRnp~ka~--------~l~----~------------~Gve~   47 (319)
T CHL00194          2 SLLVIGATGTLGRQ-IVRRA---LD------EGYQVKCLVRNLRKAA--------FLK----E------------WGAEL   47 (319)
T ss_pred             EEEEECCCCHHHHH-HHHHH---HH------CCCCEEEEECCHHHHH--------HHH----H------------CCCEE
T ss_conf             79998998589999-99999---96------8890899957867632--------342----1------------59679


Q ss_pred             EECCCCCHHHHHHHHHHHCCCCCCCEEEEECCC-HH---HHHHH----HHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             864678977899888874057678469984069-56---86667----7777772587644357760566789
Q gi|254780504|r   92 INLDVEKNYGWELLGKLLDIDKTRIRVFYLAMS-SA---FFGKI----SQRIHANNLVTEHTRVVLEKPIGSN  156 (492)
Q Consensus        92 ~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiP-P~---~f~~i----~~~L~~~~l~~~~~RiViEKPFG~D  156 (492)
                      +.+|++++++..   ..++.   ...++..+.. |.   -+..+    ..++-+++...+=.|+|.==-.|-|
T Consensus        48 v~gDl~dpesl~---~Al~G---vdaVi~~~~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~  114 (319)
T CHL00194         48 VYGDLSLPETIP---PALEG---ITAIIDASTSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAE  114 (319)
T ss_pred             EEECCCCHHHHH---HHHCC---CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             994278877899---99659---96799945667788620889889889999999998499889996135666


No 50 
>pfam08877 MepB MepB protein. MepB is a functionally uncharacterized protein in the mepRAB gene cluster of Staphylococcus aureus.
Probab=36.15  E-value=29  Score=14.67  Aligned_cols=71  Identities=14%  Similarity=0.049  Sum_probs=51.1

Q ss_pred             CCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf             7438999997085867857775513346885179999985488643766654789856999971796504443312
Q gi|254780504|r  317 ETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIEQFITTK  392 (492)
Q Consensus       317 eTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~~~~~~~~~N~Lvi~iqP~~~i~l~~~~K  392 (492)
                      .-|.|+.+.+++.+     +..|.+|.-++|..+-+..-|+.+.+.-..-...-.++.|||.+.-+...-+++--|
T Consensus         5 ~eY~a~~f~l~~~~-----i~~R~AK~TP~K~G~FVt~Wkr~~~g~~~Pf~~~d~~d~lvI~v~d~~~~G~FiFpk   75 (123)
T pfam08877         5 SDYEAGLFQLNGHT-----IRFRLAKKTPTKPGYFVAFWEKDENGQNQPFDYDDAPDLLIIVVIDDNRRGQFIFPK   75 (123)
T ss_pred             CCCCEEEEEECCEE-----EEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEH
T ss_conf             62324999999979-----999842468998506999998789998478743347897999997289067799039


No 51 
>KOG3437 consensus
Probab=35.98  E-value=27  Score=14.87  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=12.0

Q ss_pred             EEECCCCCCCEEEEEEEEECCCC
Q ss_conf             55133468851799999854886
Q gi|254780504|r  338 LRTGKYLAKHISEIVIALKPAPC  360 (492)
Q Consensus       338 lrtGK~l~~k~~eI~i~FK~~p~  360 (492)
                      +|+|-+.++=.-.-.++|+.|.+
T Consensus        93 I~~G~g~~dl~~~~~~el~ep~G  115 (184)
T KOG3437          93 IRAGNGFNDLWEIQSVELVEPKG  115 (184)
T ss_pred             EEECCCHHHEEEEEEEEEECCCC
T ss_conf             99169854304356789856773


No 52 
>cd01067 globin_like superfamily containing globins and truncated hemoglobins
Probab=35.80  E-value=29  Score=14.63  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             CHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHC
Q ss_conf             988999999999987423467-9989999898516
Q gi|254780504|r   56 TVESYRSFVDKELQRYLKDGE-YNPLKVQKFLSLI   89 (492)
Q Consensus        56 ~~e~fr~~v~~~l~~~~~~~~-~~~~~~~~F~~~~   89 (492)
                      ++++|+..+++-+..|.+.+- .+++.|.+|++.+
T Consensus        56 dd~~F~a~~rel~~rH~~~~v~l~~~~w~~Fw~~~   90 (117)
T cd01067          56 DDREFNAKTRELASRHKRDHVHMPPEVFTAFWKLL   90 (117)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             51989999999998988635779989999999999


No 53 
>COG1429 CobN Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism]
Probab=33.53  E-value=31  Score=14.50  Aligned_cols=48  Identities=21%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             CHHHHCCC-CEEEEEEEEEECCCCHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00252803-3307999998467702455-5532200178876558999999
Q gi|254780504|r  201 YESLWNNK-YIDHVQITTAETIGVEDRV-DYYNNTGALRDMIQNHLLQLLC  249 (492)
Q Consensus       201 ~e~~WNr~-~I~~VqIt~~E~~gvegR~-~yyD~~GaiRDmvQNHllQlL~  249 (492)
                      .+|+|+.. .|.-|++.-.|++| --|. --.-.+|+.||++.|-+--|--
T Consensus       919 v~Pvwd~~grV~gveviPl~eL~-RPRIDV~v~~SG~fRD~fp~~i~lld~  968 (1388)
T COG1429         919 VRPVWDAGGRVTGVEVIPLEELG-RPRIDVVVRISGLFRDAFPNQIELLDE  968 (1388)
T ss_pred             CEEEECCCCCCCCEEECCHHHCC-CCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             70540589866224725888929-984138998401120014789999999


No 54 
>pfam08659 KR KR domain. This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=33.29  E-value=32  Score=14.36  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf             7899864435667657799999997289875781-799998886998899999999998742346799899998985165
Q gi|254780504|r   12 DFIIFGGTGDLAKRKLFPALYNNYTNREENQISS-RIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIF   90 (492)
Q Consensus        12 ~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~-~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~   90 (492)
                      |.+|-||++.+-+-     +-..+..     ... .++-++|++-..++..+.+.+ +..              .-.++.
T Consensus         2 tvlITGas~GIG~a-----ia~~la~-----~Ga~~vvl~~r~~~~~~~~~~~~~~-l~~--------------~g~~~~   56 (181)
T pfam08659         2 TYLVTGGLGGLGLE-----LARWLAE-----RGARHLVLLSRSGAPDPEAEALLAE-LEA--------------RGAEVT   56 (181)
T ss_pred             EEEEECCCCHHHHH-----HHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHH-HHH--------------CCCEEE
T ss_conf             89996878789999-----9999998-----7997899986897662999999999-996--------------599699


Q ss_pred             EEECCCCCHHHHHHHHHHH
Q ss_conf             7864678977899888874
Q gi|254780504|r   91 YINLDVEKNYGWELLGKLL  109 (492)
Q Consensus        91 Y~~~d~~~~~~y~~L~~~l  109 (492)
                      ++++|++++++.+.+-+.+
T Consensus        57 ~~~~Dv~d~~~v~~~~~~~   75 (181)
T pfam08659        57 VVACDVSDRDAVAALLAEI   75 (181)
T ss_pred             EEECCCCCHHHHHHHHHHH
T ss_conf             9975689999999888657


No 55 
>pfam05320 Pox_RNA_Pol_19 Poxvirus DNA-directed RNA polymerase 19 kDa subunit. This family contains several DNA-directed RNA polymerase 19 kDa polypeptides. The Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
Probab=32.73  E-value=33  Score=14.30  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=18.2

Q ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             98644356676577999999972898757817999988869988999999999987
Q gi|254780504|r   15 IFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQR   70 (492)
Q Consensus        15 IFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~   70 (492)
                      +|--||=+|--      |+|++.|+||-.         .+++++.|++.+..-+-+
T Consensus        82 LfEiTGIiaES------yNLLqRGRlPLv---------~dlsdeT~k~n~l~vvi~  122 (167)
T pfam05320        82 LFEITGIIAES------YNLLQRGRLPLV---------SDLSDETFKDNILHVVIR  122 (167)
T ss_pred             HHHHHHHHHHH------HHHHHCCCCCCC---------CCCCHHHHHHHHHHHHHH
T ss_conf             78877899988------889873756321---------445567888769999999


No 56 
>TIGR03159 cas_Csc1 CRISPR-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Probab=32.59  E-value=33  Score=14.28  Aligned_cols=47  Identities=15%  Similarity=0.162  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf             334101479886-6487438999997085867857775513346885179999
Q gi|254780504|r  302 VKGYLEEIPLGI-SDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVI  353 (492)
Q Consensus       302 v~gY~~e~~v~~-S~TeTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i  353 (492)
                      .|.|--+..+++ |.=+||+..     .-.=...|-|||-||.+.+-+.++.+
T Consensus       112 ~p~fgr~k~ia~gn~F~~yv~~-----~~~~~~LP~yIRLGK~~sK~~V~~~~  159 (223)
T TIGR03159       112 YPNFGRAKEIAPGNKFYFYVFT-----DQGEEKLPVYIRLGKKRSKAKVTVKE  159 (223)
T ss_pred             CCCCCEEEEECCCCEEEEEEEC-----CCCCCCCCCEEEECCEEEEEEEEEEE
T ss_conf             8864412562468889999955-----88756776216733601301899998


No 57 
>pfam08644 SPT16 FACT complex subunit (SPT16/CDC68). Proteins in this family are subunits the FACT complex. The FACT complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin.
Probab=32.30  E-value=33  Score=14.25  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             CCEEEEEECCCCCCC----EEEEEEEEECCC
Q ss_conf             857775513346885----179999985488
Q gi|254780504|r  333 GIPFYLRTGKYLAKH----ISEIVIALKPAP  359 (492)
Q Consensus       333 gVPF~lrtGK~l~~k----~~eI~i~FK~~p  359 (492)
                      =|||.+.|=|....+    .++++|.|..|.
T Consensus        18 ~VPFHIstIKNvs~~~Eg~~t~lRINF~~Pg   48 (152)
T pfam08644        18 PVPFHISTIKNVSKSDEGNYTYLRINFNSPG   48 (152)
T ss_pred             CCCEEEEEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             1146857476007604698189999964898


No 58 
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=29.78  E-value=25  Score=15.08  Aligned_cols=57  Identities=19%  Similarity=0.375  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHHHHHCCHHH--EEECCCHHHHHH-HHHHH--HHHHCC---CCCHHHHCCCCEEEEEEE
Q ss_conf             898899999999987389688--351242012568-77778--877477---520025280333079999
Q gi|254780504|r  155 SNLSSAQEIHAITRKIFKESQ--IFRIDHYLGKEA-VQGLM--VFRFAN---TFYESLWNNKYIDHVQIT  216 (492)
Q Consensus       155 ~Dl~SA~eLn~~l~~~f~E~q--iyRIDHYLGKe~-vqnil--~lRFaN---~~~e~~WNr~~I~~VqIt  216 (492)
                      .|..-  .=-++|.+++|.||  -|+ ||||.=+- +-+.|  -+==||   +|-+||.+|  -+=|+|+
T Consensus       533 ~~~~G--DPaSALLEvLDPEQN~~F~-DHYldvp~DLS~V~CyFi~TAN~~d~IP~PLLDR--MEvI~ls  597 (941)
T TIGR00763       533 SSFRG--DPASALLEVLDPEQNNAFS-DHYLDVPFDLSKVLCYFIATANSIDTIPRPLLDR--MEVIELS  597 (941)
T ss_pred             CCCCC--CHHHHHHHHCCHHHCCCCC-CCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCC--EEEEECC
T ss_conf             88655--6378886412864360425-5300234004200210002447576777221374--0245238


No 59 
>KOG4278 consensus
Probab=29.59  E-value=26  Score=15.06  Aligned_cols=57  Identities=23%  Similarity=0.441  Sum_probs=39.1

Q ss_pred             CCCHHHHCCCCEEEEEEEEEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             5200252803330799999846-77024555532200178876558999999987185445
Q gi|254780504|r  199 TFYESLWNNKYIDHVQITTAET-IGVEDRVDYYNNTGALRDMIQNHLLQLLCLVAMEMPPS  258 (492)
Q Consensus       199 ~~~e~~WNr~~I~~VqIt~~E~-~gvegR~~yyD~~GaiRDmvQNHllQlL~lvAMe~P~~  258 (492)
                      -++|.+|-+....----|++|+ .-||   .|.-.+-+++|+-.-.|.|||....-|||--
T Consensus       282 eVYeGvWKkyslTvAVKtLKEDtMeve---EFLkEAAvMKeikHpNLVqLLGVCT~EpPFY  339 (1157)
T KOG4278         282 EVYEGVWKKYSLTVAVKTLKEDTMEVE---EFLKEAAVMKEIKHPNLVQLLGVCTHEPPFY  339 (1157)
T ss_pred             CEEEEEEECCEEEEEHHHHHHHHHHHH---HHHHHHHHHHHHCCCCHHHHHHHHCCCCCEE
T ss_conf             022322211204532333310005699---9999989887604810877750112689707


No 60 
>KOG0722 consensus
Probab=29.54  E-value=37  Score=13.93  Aligned_cols=131  Identities=17%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHC----CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEECCCC
Q ss_conf             6676577999999972----898757817999988869988999999999987423467998999989851657864678
Q gi|254780504|r   22 LAKRKLFPALYNNYTN----REENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVE   97 (492)
Q Consensus        22 LA~RKL~PALf~L~~~----~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y~~~d~~   97 (492)
                      |.---|+|+|+--+..    |.-+  -..++|++|+. +..+...--++--.+|-++-..+++.-+.|...         
T Consensus        11 Lvl~~Llp~l~vgl~egLYCG~en--CYdVLgV~Rea-~KseIakAYRqLARrhHPDr~r~~e~k~~F~~i---------   78 (329)
T KOG0722          11 LVLILLLPSLFVGLSEGLYCGAEN--CYDVLGVAREA-NKSEIAKAYRQLARRHHPDRNRDPESKKLFVKI---------   78 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH---------
T ss_conf             999999999998643211046064--89996111321-678999999999987397656992243356422---------


Q ss_pred             CHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCC----HHHHHHHHHHHH
Q ss_conf             9778998888740576784699840695686667777777258764435-7760566789----889999999998
Q gi|254780504|r   98 KNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTR-VVLEKPIGSN----LSSAQEIHAITR  168 (492)
Q Consensus        98 ~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~R-iViEKPFG~D----l~SA~eLn~~l~  168 (492)
                       ...|+.|..-   ....+-.++|+-|-..|....+-+...+...-..| |+|--|-|-+    +.+...+|+.+.
T Consensus        79 -Atayeilkd~---e~rt~ydyaldhpd~~fynyyqyyr~r~apkvd~raviVGvl~i~s~Fqyls~~ary~eAI~  150 (329)
T KOG0722          79 -ATAYEILKDN---ETRTQYDYALDHPDEVFYNYYQYYRARYAPKVDPRAVIVGVLVILSAFQYLSNVARYNEAIA  150 (329)
T ss_pred             -HCCCCCCCCH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -0132326650---66776788861826899999999999845336875799840534107887788999999999


No 61 
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=29.52  E-value=37  Score=13.93  Aligned_cols=13  Identities=8%  Similarity=0.248  Sum_probs=6.1

Q ss_pred             CCCCCCEEEECCC
Q ss_conf             8989878998644
Q gi|254780504|r    7 NIHNSDFIIFGGT   19 (492)
Q Consensus         7 ~~~~~~lVIFGAT   19 (492)
                      ....++++.|-|.
T Consensus        29 ~~~~fn~~~~dg~   41 (326)
T PRK07452         29 EWKSFNYSRLDGD   41 (326)
T ss_pred             CCCCCCEEEECCC
T ss_conf             4467623787375


No 62 
>TIGR02776 NHEJ_ligase_prk DNA ligase D; InterPro: IPR014143   Members of this entry are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NheJ). The system of the bacterial Ku protein (IPR009187 from INTERPRO) plus this DNA ligase is seen in about 200f bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This entry describes a central and C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs. An additional N-terminal 3 -phosphoesterase (PE) domain (IPR014144 from INTERPRO) is present in some members of this ligase. Most examples of genes for this ligase are adjacent to the gene for Ku..
Probab=29.11  E-value=34  Score=14.21  Aligned_cols=159  Identities=13%  Similarity=0.143  Sum_probs=76.7

Q ss_pred             HHHHHHCCEEECCCCCHHHH-----------HHHHHHHCCCCC--------CCEEE-EECCCH---HHHHHHHHH-H---
Q ss_conf             98985165786467897789-----------988887405767--------84699-840695---686667777-7---
Q gi|254780504|r   83 QKFLSLIFYINLDVEKNYGW-----------ELLGKLLDIDKT--------RIRVF-YLAMSS---AFFGKISQR-I---  135 (492)
Q Consensus        83 ~~F~~~~~Y~~~d~~~~~~y-----------~~L~~~l~~~~~--------~~rif-YLAiPP---~~f~~i~~~-L---  135 (492)
                      +.-...|.|+..|+-.-++-           +.|.++|+....        .-++. ++.-+.   .+...+|+. |   
T Consensus        96 ~~~~~~~~~~aFDLl~l~G~dL~~lPL~~RK~~L~~LL~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ll~~a~~~~lEGv  175 (645)
T TIGR02776        96 EGASEPLLYYAFDLLFLSGEDLRALPLEERKKRLKELLKAQDGPAEPDPAIRYSDHRVFEEDGDGQALLESACRLGLEGV  175 (645)
T ss_pred             HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             72189808999715668806778624899999999999844687567741200001100685158999999998579738


Q ss_pred             -H-------HHC-CCCCCC--------EEEEECCCCCCHHH-HHH-HHHHHHHHCC---HHH---EEECCCHHHHHHHHH
Q ss_conf             -7-------725-876443--------57760566789889-999-9999987389---688---351242012568777
Q gi|254780504|r  136 -H-------ANN-LVTEHT--------RVVLEKPIGSNLSS-AQE-IHAITRKIFK---ESQ---IFRIDHYLGKEAVQG  190 (492)
Q Consensus       136 -~-------~~~-l~~~~~--------RiViEKPFG~Dl~S-A~e-Ln~~l~~~f~---E~q---iyRIDHYLGKe~vqn  190 (492)
                       +       ..| .+.+|.        -+||   =|++--. |+. |-..+-.+++   +.|   +=++=|=++.++++.
T Consensus       176 v~Kr~~s~Y~sgkRs~~W~K~Kc~~~~~fvi---~GY~~~~gar~gfg~L~~gv~~~~d~G~L~y~G~VgtGF~~~~~~~  252 (645)
T TIGR02776       176 VSKRLDSPYRSGKRSKDWLKLKCRRRQEFVI---TGYTPPNGARRGFGALLVGVYEQEDGGQLRYAGKVGTGFGADTLKT  252 (645)
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHCCCCCEEE---EEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHH
T ss_conf             9854777301677686024112026863699---8652874568999988776514688894278886027888899999


Q ss_pred             HHH----HHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788----7747752002528033307999998467702455553220017887655899
Q gi|254780504|r  191 LMV----FRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLL  245 (492)
Q Consensus       191 il~----lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHll  245 (492)
                      |+.    ++-...=|+..--+.-...|+-.-.+=..-=.=++ ...-|+||-.+=-+|-
T Consensus       253 l~~~L~~~~~~~sPf~~~~~~~~~~g~~wv~P~l~~ev~y~~-~t~dg~lR~a~F~GLR  310 (645)
T TIGR02776       253 LLARLKALGAKASPFAGKPAGAKKRGVHWVRPSLVAEVEYAG-ITRDGILRQASFKGLR  310 (645)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEC-CCCCCEEEHHHHHCHH
T ss_conf             999999874307787788887767745885630188774406-3668815125021200


No 63 
>COG4884 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04  E-value=19  Score=15.96  Aligned_cols=67  Identities=30%  Similarity=0.572  Sum_probs=34.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHH
Q ss_conf             05667898899999999987389688351242012568777788774775200252803330799999846770245555
Q gi|254780504|r  150 EKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDY  229 (492)
Q Consensus       150 EKPFG~Dl~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~y  229 (492)
                      |-|||.| +.+..|+.             ...|+-|+.-.|+  +-|---+.|.+|.-.||.-     .+.+.-..|..+
T Consensus        39 esPFGsd-eG~d~L~~-------------Lee~~~kk~dld~--adFPk~~iEt~w~mkYi~~-----d~~lee~~r~q~   97 (176)
T COG4884          39 ESPFGSD-EGMDVLHR-------------LEEYFSKKSDLDL--ADFPKYMIETVWHMKYIPP-----DAKLEEVDRLQQ   97 (176)
T ss_pred             CCCCCCC-CHHHHHHH-------------HHHHHHCCCCCCH--HHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHH
T ss_conf             6998762-05789999-------------9998721657885--5607999999960533584-----366778889999


Q ss_pred             --HHHHHHHH
Q ss_conf             --32200178
Q gi|254780504|r  230 --YNNTGALR  237 (492)
Q Consensus       230 --yD~~GaiR  237 (492)
                        -..-|++|
T Consensus        98 ~~l~~e~~~~  107 (176)
T COG4884          98 LLLEYEGALR  107 (176)
T ss_pred             HHHHCCCHHH
T ss_conf             8761223011


No 64 
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=28.71  E-value=34  Score=14.19  Aligned_cols=40  Identities=33%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHCCHHH--EEECCCH-HHHHHHHHHHHHHHCCCC
Q ss_conf             999999987389688--3512420-125687777887747752
Q gi|254780504|r  161 QEIHAITRKIFKESQ--IFRIDHY-LGKEAVQGLMVFRFANTF  200 (492)
Q Consensus       161 ~eLn~~l~~~f~E~q--iyRIDHY-LGKe~vqnil~lRFaN~~  200 (492)
                      ..+|..|.+...+-+  |-|||+| |-||+..|=-.|-|+|.-
T Consensus       240 ~~~Na~L~~~L~~~g~nIi~iD~~~llk~im~nPa~fGlant~  282 (370)
T COG3240         240 IAFNASLTSQLEQLGGNIIRIDTYTLLKEIMTNPAEFGLANTT  282 (370)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCHHHCCCCCCC
T ss_conf             9987889999997248679967489999998498863845687


No 65 
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=27.39  E-value=27  Score=14.85  Aligned_cols=15  Identities=13%  Similarity=0.308  Sum_probs=10.5

Q ss_pred             CCCCCEEEEEEECCC
Q ss_conf             875781799998886
Q gi|254780504|r   40 ENQISSRIIGICRIK   54 (492)
Q Consensus        40 l~~~~~~IiG~aR~~   54 (492)
                      .|.....+||+.=++
T Consensus        83 ~Ps~~l~viGvTGTN   97 (494)
T TIGR01085        83 HPSKKLKVIGVTGTN   97 (494)
T ss_pred             CCCCCEEEEEEEECC
T ss_conf             855251689997128


No 66 
>pfam07993 NAD_binding_4 Male sterility protein. This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included.
Probab=27.20  E-value=40  Score=13.65  Aligned_cols=77  Identities=25%  Similarity=0.187  Sum_probs=45.9

Q ss_pred             ECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEECC
Q ss_conf             86443566765779999999728987578179999888699889999999999874234679989999898516578646
Q gi|254780504|r   16 FGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLD   95 (492)
Q Consensus        16 FGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~Y~~~d   95 (492)
                      =||||=|-+.-|-    +|...+   + ..+|++.-|.+-+ +.-++.+.+.+..+...   +   .....+++.++.+|
T Consensus         2 TGaTGFlG~~ll~----~Ll~~~---~-~~~V~~LvR~~~~-~~~~~r~~~~~~~~~~~---~---~~~~~~ri~~v~gD   66 (245)
T pfam07993         2 TGATGFLGKVLLE----KLLRSC---P-EVKIYCLVRAKDG-ESALERLRQELLKYGLF---D---RLKALERIIPVAGD   66 (245)
T ss_pred             CCCHHHHHHHHHH----HHHHCC---C-CCEEEEEECCCCC-CCHHHHHHHHHHHCCCC---C---HHHCCCCEEEEECC
T ss_conf             3843599999999----999579---9-9789999678984-05899999999856753---1---01034777999561


Q ss_pred             CCC------HHHHHHHHH
Q ss_conf             789------778998888
Q gi|254780504|r   96 VEK------NYGWELLGK  107 (492)
Q Consensus        96 ~~~------~~~y~~L~~  107 (492)
                      +++      .+.|+.|.+
T Consensus        67 l~~~~lGL~~~~~~~l~~   84 (245)
T pfam07993        67 LSEPNLGLSDEDFQELAE   84 (245)
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             688657989999999983


No 67 
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828    This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=27.17  E-value=31  Score=14.48  Aligned_cols=15  Identities=33%  Similarity=0.612  Sum_probs=8.0

Q ss_pred             CCCEEEECCCCHHHH
Q ss_conf             987899864435667
Q gi|254780504|r   10 NSDFIIFGGTGDLAK   24 (492)
Q Consensus        10 ~~~lVIFGATGDLA~   24 (492)
                      -++.|+|||+|.-+.
T Consensus        61 k~DaiLFGA~t~~~~   75 (350)
T TIGR02088        61 KADAILFGAVTETAA   75 (350)
T ss_pred             HCCEEEECCCCCCCC
T ss_conf             279475378788887


No 68 
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=27.06  E-value=40  Score=13.64  Aligned_cols=66  Identities=14%  Similarity=0.269  Sum_probs=34.3

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             89986443566765779999999728987578179999888699889999999999874234679989999898516
Q gi|254780504|r   13 FIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLI   89 (492)
Q Consensus        13 lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~   89 (492)
                      ++|||+||---+--    | ...  ...|+ .|+|+|.+- .-+.+...+.+++.--++.-  -.++...+.+...+
T Consensus         1 I~IlGsTGSIG~~t----L-~Vi--~~~~~-~f~v~~Lsa-~~N~~~L~~q~~~f~p~~v~--i~~~~~~~~l~~~~   66 (129)
T pfam02670         1 ITILGSTGSIGTQT----L-DVI--RRNPD-RFEVVALSA-GRNVELLAEQIKEFKPKYVA--VADEEAAEELKEAL   66 (129)
T ss_pred             CEEECCCCHHHHHH----H-HHH--HHCCC-CEEEEEEEE-CCCHHHHHHHHHHCCCCEEE--ECCHHHHHHHHHHC
T ss_conf             98976786889999----9-999--95956-718999983-47899999999973997999--95899999999863


No 69 
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=26.94  E-value=41  Score=13.62  Aligned_cols=31  Identities=39%  Similarity=0.611  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             67657799999997289875781799998886998899999999
Q gi|254780504|r   23 AKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDK   66 (492)
Q Consensus        23 A~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~   66 (492)
                      |...|-|||-    .|     ..+.||.    -+.++||.++..
T Consensus       287 AaNiLKPaLA----RG-----eL~~IGA----TT~~EYRk~iEK  317 (786)
T COG0542         287 AANLLKPALA----RG-----ELRCIGA----TTLDEYRKYIEK  317 (786)
T ss_pred             HHHHHHHHHH----CC-----CEEEEEE----CCHHHHHHHHHH
T ss_conf             5664677874----58-----7379973----558999887330


No 70 
>COG3935 DnaD Putative primosome component and related proteins [DNA replication, recombination, and repair]
Probab=26.91  E-value=41  Score=13.62  Aligned_cols=18  Identities=33%  Similarity=0.739  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHCCCC
Q ss_conf             458846999988734898
Q gi|254780504|r  446 TWKWSDSILKSWQIINQK  463 (492)
Q Consensus       446 sWrivdpiL~~~~~~~~~  463 (492)
                      .|++|+.||..|.+.+.+
T Consensus       178 n~~YI~~IL~nW~k~gvk  195 (246)
T COG3935         178 NFKYIDAILRNWKKNGVK  195 (246)
T ss_pred             CHHHHHHHHHHHHHCCCC
T ss_conf             689999999999983875


No 71 
>KOG1151 consensus
Probab=26.64  E-value=29  Score=14.71  Aligned_cols=146  Identities=20%  Similarity=0.402  Sum_probs=76.4

Q ss_pred             HHHHCCHHHEE--ECCCHHHH-----------HHHHHHHH--H-HHCC---CCC--HHHHCCCCEEEEEEEEEECCCCHH
Q ss_conf             98738968835--12420125-----------68777788--7-7477---520--025280333079999984677024
Q gi|254780504|r  167 TRKIFKESQIF--RIDHYLGK-----------EAVQGLMV--F-RFAN---TFY--ESLWNNKYIDHVQITTAETIGVED  225 (492)
Q Consensus       167 l~~~f~E~qiy--RIDHYLGK-----------e~vqnil~--l-RFaN---~~~--e~~WNr~~I~~VqIt~~E~~gveg  225 (492)
                      +.+|-.-++||  |..|.--.           |-|.|+.+  | |..|   .-|  -|+.|..|.         -+-+-|
T Consensus       402 laEYhEqeEIfKLRlgHLkKEEaeiqaElERLErvrnlHiRELKRi~NEdnSQFkDHptLn~RYL---------lLhLLG  472 (775)
T KOG1151         402 LAEYHEQEEIFKLRLGHLKKEEAEIQAELERLERVRNLHIRELKRIHNEDNSQFKDHPTLNDRYL---------LLHLLG  472 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHH---------HHHHHC
T ss_conf             99888689999998865455677888899999998877899988642442333045741677899---------999861


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--HHHCCCCHH-HCCCCEEEECCCCCCCCCEEC
Q ss_conf             55553220017887655899999998718544588589999999999--730688811-223613652136677687343
Q gi|254780504|r  226 RVDYYNNTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVL--QALQMITPE-NVQKLTVRGQYQSGIINGIPV  302 (492)
Q Consensus       226 R~~yyD~~GaiRDmvQNHllQlL~lvAMe~P~~~~~~~ir~eK~kvl--k~~r~~~~~-~v~~~~v~GQY~~~~~~~~~v  302 (492)
                      ||||-+-+-|. |.-.|.      .||..-.- + -.+-||||-.-.  .++|-.+.. .+++.-+.-||.         
T Consensus       473 rGGFSEVyKAF-Dl~EqR------YvAvKIHq-l-NK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYD---------  534 (775)
T KOG1151         473 RGGFSEVYKAF-DLTEQR------YVAVKIHQ-L-NKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYD---------  534 (775)
T ss_pred             CCCHHHHHHHC-CCCHHH------EEEEEEEH-H-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE---------
T ss_conf             56478899860-301101------33565011-0-201566766658887777776654047531024010---------


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEE
Q ss_conf             341014798866487438999997085867857775513346885179
Q gi|254780504|r  303 KGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISE  350 (492)
Q Consensus       303 ~gY~~e~~v~~S~TeTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~e  350 (492)
                        |..      -+|.+||.|--|+.-   .+.-|||+--|-|.+|.+.
T Consensus       535 --yfs------lDtdsFCTVLEYceG---NDLDFYLKQhklmSEKEAR  571 (775)
T KOG1151         535 --YFS------LDTDSFCTVLEYCEG---NDLDFYLKQHKLMSEKEAR  571 (775)
T ss_pred             --EEE------ECCCCCEEEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_conf             --245------226653343453478---8504787751100078889


No 72 
>COG3487 IrpA Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism]
Probab=26.12  E-value=35  Score=14.09  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=20.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHH-----------------HHHHHHHHCCCCCH
Q ss_conf             678988999999999873896883512420125687-----------------77788774775200
Q gi|254780504|r  153 IGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAV-----------------QGLMVFRFANTFYE  202 (492)
Q Consensus       153 FG~Dl~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~v-----------------qnil~lRFaN~~~e  202 (492)
                      |-..|.+|+.|.+.            ||-+|.|+.-                 |.--++||.|.|..
T Consensus        66 yeDsl~TA~aL~Ka------------iDalla~PsaetLkaareAW~aARvPYqqsEvyRFGN~ivD  120 (446)
T COG3487          66 YEDSLTTAQALQKA------------IDALLAKPSAETLKAAREAWLAARVPYQQSEVYRFGNAIVD  120 (446)
T ss_pred             HHHHHHHHHHHHHH------------HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH
T ss_conf             88777789999999------------99997198688999999999985385126567760671034


No 73 
>PRK05854 short chain dehydrogenase; Provisional
Probab=25.80  E-value=42  Score=13.48  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=72.0

Q ss_pred             CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             88898989878998644356676577999999972898757817999988869988999999999987423467998999
Q gi|254780504|r    3 NHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKV   82 (492)
Q Consensus         3 ~~tp~~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~   82 (492)
                      ...|++..-++||=|||.-+-.--   | -.|..      .+.+||-.+|+.-.-++-.+.++.    ....        
T Consensus         7 ~~iPdL~GK~~vITGa~sGIG~~~---a-~~La~------~Ga~Vil~~R~~~k~~~a~~~i~~----~~~~--------   64 (314)
T PRK05854          7 ATVPDLSGKLAVVTGASSGLGFGL---A-RRLAA------AGADVILPVRNRAKGEAAVAAIRT----AVPD--------   64 (314)
T ss_pred             CCCCCCCCCEEEECCCCCHHHHHH---H-HHHHH------CCCEEEEEECCHHHHHHHHHHHHH----HCCC--------
T ss_conf             789899999899906882999999---9-99997------849899997999999999999998----6899--------


Q ss_pred             HHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC-CC---CEEEEECCCCCCHH
Q ss_conf             989851657864678977899888874057678469984069568666777777725876-44---35776056678988
Q gi|254780504|r   83 QKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVT-EH---TRVVLEKPIGSNLS  158 (492)
Q Consensus        83 ~~F~~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~-~~---~RiViEKPFG~Dl~  158 (492)
                          ..+.++.+|+.+.++-..+.+.+.....  +|-.|             +..+|... ..   +.=-+|.-|+.|.-
T Consensus        65 ----~~v~~~~lDLs~l~sVr~~a~~~~~~~~--~lDiL-------------InNAGv~~~~~~~~T~dG~E~~f~vN~L  125 (314)
T PRK05854         65 ----AKLTIRALDLSSLASVAALGEQLLAEGR--PIHLL-------------INNAGVMTPPERQTTADGFELQFGTNHL  125 (314)
T ss_pred             ----CCEEEEECCCCCHHHHHHHHHHHHHCCC--CCCEE-------------EECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             ----8569996463168999999998753068--75278-------------7267666588654057763665553457


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999987389
Q gi|254780504|r  159 SAQEIHAITRKIFK  172 (492)
Q Consensus       159 SA~eLn~~l~~~f~  172 (492)
                      +---|...|.....
T Consensus       126 ghflLt~~Llp~l~  139 (314)
T PRK05854        126 GHFALTAHLLPLLR  139 (314)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             78889887787632


No 74 
>COG3875 Uncharacterized conserved protein [Function unknown]
Probab=25.69  E-value=43  Score=13.47  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEE-E-CCCCCHHHHHHHHHHHHH
Q ss_conf             765779999999728987578179999-8-886998899999999998
Q gi|254780504|r   24 KRKLFPALYNNYTNREENQISSRIIGI-C-RIKMTVESYRSFVDKELQ   69 (492)
Q Consensus        24 ~RKL~PALf~L~~~~~l~~~~~~IiG~-a-R~~~~~e~fr~~v~~~l~   69 (492)
                      .+++.|.||.-...|..++.+..||.. | .+.++.|+|.+.+-+.+.
T Consensus        82 t~~Iap~L~reL~~gg~~d~ni~ii~A~G~Hrt~t~EEf~kklGeei~  129 (423)
T COG3875          82 TKKIAPNLLRELYLGGAKDENITIIFALGLHRTQTEEEFEKKLGEEIV  129 (423)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             444209999999965788654799871256676539999998717777


No 75 
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular; InterPro: IPR010915   This entry represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting..
Probab=25.39  E-value=28  Score=14.73  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCEEEECC----------CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf             998889898987899864----------43566765779999999728987578179999888699
Q gi|254780504|r    1 MQNHTPNIHNSDFIIFGG----------TGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMT   56 (492)
Q Consensus         1 m~~~tp~~~~~~lVIFGA----------TGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~   56 (492)
                      |....++..|.|+|+.|+          +-|||++|-+==|    ++..+-...+.==|+||.=+-
T Consensus       197 mae~~~P~~P~sm~lmGGPIDaR~~PT~VN~lA~~~~~eWF----~~n~i~~VP~~YpG~GR~VYP  258 (414)
T TIGR01849       197 MAENEEPAQPRSMTLMGGPIDARASPTVVNELAKEKPIEWF----QENLIMRVPFPYPGAGRKVYP  258 (414)
T ss_pred             HHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCHHHH----HHCCEEECCCCCCCCCCCCCC
T ss_conf             87457888884057627776645552134430012672788----538764084267778854371


No 76 
>KOG1384 consensus
Probab=25.18  E-value=31  Score=14.50  Aligned_cols=59  Identities=22%  Similarity=0.442  Sum_probs=32.4

Q ss_pred             CCCEEEECCCC--------HHHHHHHHHHHH------HHHH-------------CCCCCCCCEEEEEEEC--CCCCHHHH
Q ss_conf             98789986443--------566765779999------9997-------------2898757817999988--86998899
Q gi|254780504|r   10 NSDFIIFGGTG--------DLAKRKLFPALY------NNYT-------------NREENQISSRIIGICR--IKMTVESY   60 (492)
Q Consensus        10 ~~~lVIFGATG--------DLA~RKL~PALf------~L~~-------------~~~l~~~~~~IiG~aR--~~~~~e~f   60 (492)
                      .-.+||-|+||        |||.|  ||+=-      ++|.             ....|.   +++|.--  .+++..+|
T Consensus         7 ~KVvvI~G~TGsGKSrLaVdLA~r--f~~EIINsDkmQvYkGldivTnK~t~~e~~gVPH---HLlg~l~~~~e~t~~~F   81 (348)
T KOG1384           7 DKVVVIMGATGAGKSRLAVDLATR--FPGEIINSDKMQVYKGLDIVTNKITLQERKGVPH---HLLGHLHPEAEYTAGEF   81 (348)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH--CCCEEECCCCEEEECCCCCCCCCCCHHHCCCCCH---HHHCCCCHHHHCCHHHH
T ss_conf             359999557777704667888975--7864651563356327662016687554079876---77076886764269999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999987423
Q gi|254780504|r   61 RSFVDKELQRYLK   73 (492)
Q Consensus        61 r~~v~~~l~~~~~   73 (492)
                      +.....+++.-..
T Consensus        82 ~~~a~~aie~I~~   94 (348)
T KOG1384          82 EDDASRAIEEIHS   94 (348)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999985


No 77 
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117   The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=25.06  E-value=41  Score=13.59  Aligned_cols=39  Identities=8%  Similarity=-0.121  Sum_probs=19.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             3586989999845884699998873489874579889971
Q gi|254780504|r  435 TLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGP  474 (492)
Q Consensus       435 tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP  474 (492)
                      .++..-.+=.+-|+.+-.-|..- +.+.....|....|.|
T Consensus       336 ~~~P~~~~k~~e~~~~~~~i~~~-~~~~~~~~~~v~lf~~  374 (900)
T TIGR02746       336 KWVPSLEKKLKEIKELREEISSG-GDSLVSMFYNVLLFTK  374 (900)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHCCC
T ss_conf             63130788898899999998658-9511131332530068


No 78 
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain.  The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation  for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=24.66  E-value=44  Score=13.34  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHH
Q ss_conf             9999999998738968835124201256877778
Q gi|254780504|r  159 SAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLM  192 (492)
Q Consensus       159 SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil  192 (492)
                      +-++|.+...+..+..+++-||+||+.+..+++.
T Consensus        51 t~~~L~~rAk~~~p~a~~i~v~nfL~~~~yd~lv   84 (87)
T cd05567          51 THASLTDRAKKKAPQAQHLSVDNFLNTPEYDELI   84 (87)
T ss_pred             EHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHH
T ss_conf             6699999999768998899658725887799999


No 79 
>KOG2733 consensus
Probab=24.59  E-value=45  Score=13.33  Aligned_cols=49  Identities=16%  Similarity=0.193  Sum_probs=24.8

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             9878998644356676577999999972898757817999988869988999999999
Q gi|254780504|r   10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKE   67 (492)
Q Consensus        10 ~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~   67 (492)
                      ..++|||||||=-.+--..-++    ..+.++  +..+-=.||+   .+-.++.+++.
T Consensus         5 ~yDvVIyGASGfTG~yivee~v----~~~~~~--~~slavAGRn---~~KL~~vL~~~   53 (423)
T KOG2733           5 RYDVVIYGASGFTGKYIVEEAV----SSQVFE--GLSLAVAGRN---EKKLQEVLEKV   53 (423)
T ss_pred             EEEEEEECCCCCCCEEEHHHHH----HHHCCC--CCEEEEECCC---HHHHHHHHHHH
T ss_conf             3359998156665302489886----430246--7547873278---88999999998


No 80 
>pfam04271 consensus
Probab=24.51  E-value=45  Score=13.32  Aligned_cols=19  Identities=26%  Similarity=0.615  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             8458846999988734898
Q gi|254780504|r  445 ETWKWSDSILKSWQIINQK  463 (492)
Q Consensus       445 ~sWrivdpiL~~~~~~~~~  463 (492)
                      .+|+.++.||..|.+++.+
T Consensus        48 ~~~~Yi~~IL~~W~~~gi~   66 (73)
T pfam04271        48 ANFRYIQAILKNWKNNGIK   66 (73)
T ss_pred             CCHHHHHHHHHHHHHCCCC
T ss_conf             9879999999999995999


No 81 
>KOG1774 consensus
Probab=24.40  E-value=27  Score=14.85  Aligned_cols=41  Identities=34%  Similarity=0.514  Sum_probs=30.0

Q ss_pred             HHHHHHHHH-HHHHHCCCCCHHHHCCCCEEEEEEEEEECCCC--HHHHHHHHHH
Q ss_conf             125687777-88774775200252803330799999846770--2455553220
Q gi|254780504|r  183 LGKEAVQGL-MVFRFANTFYESLWNNKYIDHVQITTAETIGV--EDRVDYYNNT  233 (492)
Q Consensus       183 LGKe~vqni-l~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gv--egR~~yyD~~  233 (492)
                      ++|.|||-| +.|||-       =||   ..|||-..|..|+  |||.-=||.+
T Consensus         6 v~kvmv~Pin~Ifr~L-------q~~---t~VqIWl~eq~~~rieG~IvGFDEy   49 (88)
T KOG1774           6 VQKVMVQPINLIFRFL-------QNR---TRVQIWLFEQVGLRIEGRIVGFDEY   49 (88)
T ss_pred             CCCEECCCHHHHHHHH-------HCC---CCEEEEEEECCCCEEEEEEECHHHH
T ss_conf             1614527699999998-------627---8638998713683776789625884


No 82 
>pfam03699 UPF0182 Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins.
Probab=24.14  E-value=14  Score=16.97  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=33.2

Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             999999879833586989999845884699998873489874579889971889
Q gi|254780504|r  424 RLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQS  477 (492)
Q Consensus       424 ~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a  477 (492)
                      +..-||.+|+-++++-.++        ||||++|+  +.-|-...+.|..|.+-
T Consensus       597 Kv~VDAY~G~v~~Y~~D~~--------DPil~t~~--kiFP~lf~p~~~mp~~L  640 (771)
T pfam03699       597 KAVVDAYDGTVDFYVVDPE--------DPILKTWQ--KIFPGLFKPLSAMPDDL  640 (771)
T ss_pred             EEEEECCCCEEEEEECCCC--------CHHHHHHH--HHCCCCCCCHHHCCHHH
T ss_conf             8999877880799972898--------86999999--86960159957789999


No 83 
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=24.02  E-value=28  Score=14.78  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=14.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             869899998458846999988734
Q gi|254780504|r  437 FMGYDEVEETWKWSDSILKSWQII  460 (492)
Q Consensus       437 F~r~dEve~sWrivdpiL~~~~~~  460 (492)
                      =+-.+.++.+-.=.|.|+..|.+.
T Consensus       256 dI~p~~~~qA~~ELdeiir~WAdr  279 (299)
T PRK13245        256 DIPPERWEQAMEELDEIIRHWADK  279 (299)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             898799999999999999999998


No 84 
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.63  E-value=46  Score=13.21  Aligned_cols=70  Identities=11%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             98789986443566765779999999728987578179999888699889999999999874234679989999898516
Q gi|254780504|r   10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLI   89 (492)
Q Consensus        10 ~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~   89 (492)
                      |-+++|-|||..+-+-     +-..|..     .+.+++.++|+.-..++..    +.+    .            ...+
T Consensus         2 ~~~VlITGassGIG~a-----~A~~la~-----~G~~v~l~~R~~~~L~~~~----~~~----~------------~~~~   51 (256)
T PRK07024          2 PLKVFITGASSGIGQA-----LAREYAR-----QGATLGLVARRTDALQAFA----ARL----P------------KARV   51 (256)
T ss_pred             CCEEEEECCCHHHHHH-----HHHHHHH-----CCCEEEEEECCHHHHHHHH----HHC----C------------CCCE
T ss_conf             9989998460299999-----9999998-----8998999989889999999----976----7------------9976


Q ss_pred             CEEECCCCCHHHHHHHHHHH
Q ss_conf             57864678977899888874
Q gi|254780504|r   90 FYINLDVEKNYGWELLGKLL  109 (492)
Q Consensus        90 ~Y~~~d~~~~~~y~~L~~~l  109 (492)
                      .++++|+.+.++.+.+.+.+
T Consensus        52 ~~~~~Dv~d~~~~~~~~~~~   71 (256)
T PRK07024         52 SVYAADVRDADALAAAAADF   71 (256)
T ss_pred             EEEEECCCCHHHHHHHHHHH
T ss_conf             99981179999999999999


No 85 
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=23.55  E-value=46  Score=13.19  Aligned_cols=91  Identities=19%  Similarity=0.361  Sum_probs=52.7

Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf             87899864435667657799999997289875781799998886998899999999998742346799899998985165
Q gi|254780504|r   11 SDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIF   90 (492)
Q Consensus        11 ~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~   90 (492)
                      -+..+.||.|- -|--|.-|+++-|...     ..++|-+.|.++.+  +-. +-+.++.       .+.++--||..++
T Consensus        86 NnVLLwGaRGt-GKSSLVKA~~~e~~~~-----glrLVEV~k~dl~~--Lp~-l~~~Lr~-------~~~kFIlFcDDLS  149 (287)
T COG2607          86 NNVLLWGARGT-GKSSLVKALLNEYADE-----GLRLVEVDKEDLAT--LPD-LVELLRA-------RPEKFILFCDDLS  149 (287)
T ss_pred             CCEEEECCCCC-CHHHHHHHHHHHHHHC-----CCEEEEECHHHHHH--HHH-HHHHHHC-------CCCEEEEEECCCC
T ss_conf             23677637777-7479999999998741-----77079976888865--799-9999961-------8860899956777


Q ss_pred             EEECCCCCHHHHHHHHHHHCCC---CCCCEEEEE
Q ss_conf             7864678977899888874057---678469984
Q gi|254780504|r   91 YINLDVEKNYGWELLGKLLDID---KTRIRVFYL  121 (492)
Q Consensus        91 Y~~~d~~~~~~y~~L~~~l~~~---~~~~rifYL  121 (492)
                      |-.    +.++|+.|+..++++   .+.|.+||-
T Consensus       150 Fe~----gd~~yK~LKs~LeG~ve~rP~NVl~YA  179 (287)
T COG2607         150 FEE----GDDAYKALKSALEGGVEGRPANVLFYA  179 (287)
T ss_pred             CCC----CCHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             777----813899999985388556887079997


No 86 
>PTZ00213 asparagine synthetase A; Provisional
Probab=23.50  E-value=6.6  Score=19.26  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=19.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCCCC
Q ss_conf             8858999999999973068881122361365213667768734334101
Q gi|254780504|r  259 VEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLE  307 (492)
Q Consensus       259 ~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY~~  307 (492)
                      +++..=-++-+|-..|+=.+.        +=|.-.+|+.++...|.|-|
T Consensus       182 Lt~keRE~~i~ke~gAVFl~g--------IG~~L~~G~~HD~RAPDYDD  222 (350)
T PTZ00213        182 LDPKEREREIVKKYGAVFLIG--------IGCKLSSGDPHDARAPDYDD  222 (350)
T ss_pred             CCHHHHHHHHHHHHCCEEEEE--------CCCCCCCCCCCCCCCCCCCC
T ss_conf             987889999999839599994--------37867898957777998764


No 87 
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the 
Probab=23.49  E-value=47  Score=13.19  Aligned_cols=43  Identities=19%  Similarity=0.102  Sum_probs=32.4

Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf             8789986443566765779999999728987578179999888
Q gi|254780504|r   11 SDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRI   53 (492)
Q Consensus        11 ~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~   53 (492)
                      ..+|-|.||-==-=|+-+|.|-.+|..-.-...++.||+++..
T Consensus        20 ~vll~FWATWC~PC~~e~P~L~~ly~~~~~~~~~~~vi~Is~d   62 (131)
T cd03009          20 TVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD   62 (131)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             8999998757866652658999999998613887799998558


No 88 
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=23.21  E-value=47  Score=13.15  Aligned_cols=196  Identities=15%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             98987899864435667657799999997289875781799998886998899999999998742346799899998985
Q gi|254780504|r    8 IHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLS   87 (492)
Q Consensus         8 ~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~   87 (492)
                      +..-+.||=|||+.+-+-     +-..++     ..+..+|-+||++---++..+.+++                 .+.-
T Consensus         4 ~~~~~~lITGASsGIG~~-----~A~~lA-----~~g~~liLvaR~~~kL~~la~~l~~-----------------~~~v   56 (265)
T COG0300           4 MKGKTALITGASSGIGAE-----LAKQLA-----RRGYNLILVARREDKLEALAKELED-----------------KTGV   56 (265)
T ss_pred             CCCCEEEEECCCCHHHHH-----HHHHHH-----HCCCEEEEEECCHHHHHHHHHHHHH-----------------HHCC
T ss_conf             778679997788648999-----999999-----7799799996769999999999987-----------------3086


Q ss_pred             HCCEEECCCCCHHHHHHHHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHHHCCCC-------CCCEEEEECCCCCCHHH
Q ss_conf             1657864678977899888874057678-469984069568666777777725876-------44357760566789889
Q gi|254780504|r   88 LIFYINLDVEKNYGWELLGKLLDIDKTR-IRVFYLAMSSAFFGKISQRIHANNLVT-------EHTRVVLEKPIGSNLSS  159 (492)
Q Consensus        88 ~~~Y~~~d~~~~~~y~~L~~~l~~~~~~-~rifYLAiPP~~f~~i~~~L~~~~l~~-------~~~RiViEKPFG~Dl~S  159 (492)
                      .+..++.|++++++-.++...+...... ..+                ++.+|...       .|.+  +|+=|--|..+
T Consensus        57 ~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvL----------------VNNAG~g~~g~f~~~~~~~--~~~mi~lN~~a  118 (265)
T COG0300          57 EVEVIPADLSDPEALERLEDELKERGGPIDVL----------------VNNAGFGTFGPFLELSLDE--EEEMIQLNILA  118 (265)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCCCEE----------------EECCCCCCCCCHHHCCHHH--HHHHHHHHHHH
T ss_conf             27999776788367999999998248852389----------------9778747766542188589--99999999999


Q ss_pred             HHHHHHHHHHHCCH---HHEEECCCHHHHHHHHHH--------HHHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHH
Q ss_conf             99999999873896---883512420125687777--------8877477520025280333079999984677024555
Q gi|254780504|r  160 AQEIHAITRKIFKE---SQIFRIDHYLGKEAVQGL--------MVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVD  228 (492)
Q Consensus       160 A~eLn~~l~~~f~E---~qiyRIDHYLGKe~vqni--------l~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~  228 (492)
                      .-.|...+...+.+   -+|--|----|+.+.-+.        .++-|+|.+-+.+  +  =..|.++.-..-.+  |.+
T Consensus       119 ~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa~v~~fSeaL~~EL--~--~~gV~V~~v~PG~~--~T~  192 (265)
T COG0300         119 LTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREEL--K--GTGVKVTAVCPGPT--RTE  192 (265)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--C--CCCEEEEEEECCCC--CCC
T ss_conf             99999999999986589669998434532888632799999999999999999983--5--89849999965733--355


Q ss_pred             HHHHH--HHHHH-----HHHHHHHHHHHHHHCC
Q ss_conf             53220--01788-----7655899999998718
Q gi|254780504|r  229 YYNNT--GALRD-----MIQNHLLQLLCLVAME  254 (492)
Q Consensus       229 yyD~~--GaiRD-----mvQNHllQlL~lvAMe  254 (492)
                      |+|..  +.-..     |+.-|=..-.++.+++
T Consensus       193 f~~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~  225 (265)
T COG0300         193 FFDAKGSDVYLLSPGELVLSPEDVAEAALKALE  225 (265)
T ss_pred             CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf             333444432112321230699999999999985


No 89 
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=23.19  E-value=39  Score=13.72  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHH
Q ss_conf             987899864435667657799999997289875781799998886998899999999998742346799-8999989851
Q gi|254780504|r   10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYN-PLKVQKFLSL   88 (492)
Q Consensus        10 ~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~-~~~~~~F~~~   88 (492)
                      ++++||.||||=-.+ .+--.   |...+.-+      .=.||+.--.    +-++..|.+....-+.. +...++.+++
T Consensus         6 e~d~iiYGAtGy~G~-lvae~---l~~~g~~~------aLAgRs~~kl----~~l~~~LG~~~~~~p~~~p~~~~~~~~~   71 (382)
T COG3268           6 EYDIIIYGATGYAGG-LVAEY---LAREGLTA------ALAGRSSAKL----DALRASLGPEAAVFPLGVPAALEAMASR   71 (382)
T ss_pred             CEEEEEECCCCCHHH-HHHHH---HHHCCCCH------HHCCCCHHHH----HHHHHHCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             403899746552158-99999---99748864------3216888999----8899850966444677888999999742


Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             657864678977899888874057678469984069--56866677777772587644357760
Q gi|254780504|r   89 IFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMS--SAFFGKISQRIHANNLVTEHTRVVLE  150 (492)
Q Consensus        89 ~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiP--P~~f~~i~~~L~~~~l~~~~~RiViE  150 (492)
                      ..-+-   +....|..-..-+-..-..+...|+-+-  ..+|..+....++.- ...+.|||--
T Consensus        72 ~~VVl---ncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A-~~~Ga~Ii~~  131 (382)
T COG3268          72 TQVVL---NCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQA-ADAGARIIPG  131 (382)
T ss_pred             CEEEE---ECCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHH-HHCCCEEECC
T ss_conf             66899---614661202647999999719872413561799999988877788-7559789666


No 90 
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1; InterPro: IPR004575   MAT1 (menage a trois 1) is a RING finger protein with a characteristic C3HC4 motif located in the N-terminal domain. MAT1 stabilises the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex which then goes on to activate many of the CDK enzymes intimately involved in the cell cycle . CDK7 forms a stable complex with cyclin H and MAT1 in vivo only when phosphorylated on either one of two residues (Ser164 or Thr170) in its T-loop. The requirement for MAT1 for the activation of CAK can be by-passed by the phosphorylation of CDK7 on the T-loop. The two mechanisms for CDK7 complex stabilisation and activation (MAT1 addition and T-loop phosphorylation), which can operate independently in vitro, actually cooperate under physiological conditions to maintain complex integrity. With prolonged exposure to elevated temperature, dissociation to monomeric subunits occurs in vivo when CDK7 is dephosphorylated, even in the presence of MAT1 .    The Cyclin H-MAT1-CDK7 complex also forms part of TFIIH, a multiprotein complex required for both transcription and DNA repair.; GO: 0007049 cell cycle, 0005634 nucleus.
Probab=23.18  E-value=44  Score=13.37  Aligned_cols=14  Identities=21%  Similarity=0.202  Sum_probs=12.5

Q ss_pred             CCHHHHHHHHHHCC
Q ss_conf             86248999999879
Q gi|254780504|r  419 PDGYERLLMDIIHA  432 (492)
Q Consensus       419 pdaYe~Ll~D~i~G  432 (492)
                      --||+|.|.|||.|
T Consensus       303 ~lAc~RaLqeAf~G  316 (322)
T TIGR00570       303 NLACERALQEAFSG  316 (322)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             89999999998511


No 91 
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=22.94  E-value=48  Score=13.11  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=20.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             9999888699889999999999874234679989999898516
Q gi|254780504|r   47 IIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLI   89 (492)
Q Consensus        47 IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~   89 (492)
                      ++--+|+--+.-++|.+-....-   +.....++.++.|+.+.
T Consensus        47 vvnnsrs~rtaralrhhkyrk~c---k~crvsdedin~fltkt   86 (420)
T PRK09537         47 VVNNSRSSRTARALRHHKYRKTC---KRCRVSDEDINNFLTKT   86 (420)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHH
T ss_conf             87156322778887621110422---22576778899999874


No 92 
>pfam09093 Lyase_catalyt Lyase, catalytic. Members of this family are predominantly found in chondroitin ABC lyase I, and adopt a helical structure, with fifteen alpha-helices which are at least two turns long and several short helical turns. The bulk of the domain is formed by ten alpha-helices forming five hairpin-like pairs and arranged into an incomplete toroid, the (alpha/alpha)5 fold. Additionally, two long and two short alpha-helices at the N terminus of the domain wrap around the toroid. At the C-terminal end of the toroid there is one additional short alpha-helix. This domain is required for degradation of polysaccharides containing 1,4-beta-D-hexosaminyl and 1,3-beta-D-glucoronosyl or 1,3-alpha-L-iduronosyl linkages to disaccharides containing 4-deoxy-beta-D-gluc-4-enuronosyl groups.
Probab=22.55  E-value=49  Score=13.06  Aligned_cols=55  Identities=25%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECC
Q ss_conf             0178876558999999987185445885899999999997306888112236136521366776873433
Q gi|254780504|r  234 GALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVK  303 (492)
Q Consensus       234 GaiRDmvQNHllQlL~lvAMe~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~  303 (492)
                      |+.-|.+-.-+++.|+.+-|++-        -.||+..|+++..+=.     .++  ||..|..||-++.
T Consensus       187 ~~~~D~~nT~~~~~l~siLl~~D--------~~ek~~~L~~fs~wl~-----~~l--~~spG~~ggfKpD  241 (356)
T pfam09093       187 SSDLDSFNTLSMQHLASLLLEPD--------DPEKIQLLNSLSRWIT-----GAL--QVAPGGAGGIKVD  241 (356)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHH-----CCC--CCCCCCCCCCCCC
T ss_conf             41148888889999999983898--------1999999999999984-----616--7698877764788


No 93 
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=22.30  E-value=49  Score=13.03  Aligned_cols=107  Identities=20%  Similarity=0.247  Sum_probs=74.9

Q ss_pred             EECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHHCC-
Q ss_conf             8406956866677777772587644357760566789889999999998738968835124201256877778877477-
Q gi|254780504|r  120 YLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFAN-  198 (492)
Q Consensus       120 YLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~~f~E~qiyRIDHYLGKe~vqnil~lRFaN-  198 (492)
                      |...+..--...-.-+-.+-++ +..|.||.=|-|+.-.  .++          .-+|-.|         ..--+|+.+ 
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~vv~lppgy~~~--~k~----------pvl~~~D---------G~~~~~~g~i  115 (299)
T COG2382          58 YWDCERTPGGPVEEILYSSELL-SERRRVVYLPPGYNPL--EKY----------PVLYLQD---------GQDWFRSGRI  115 (299)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHC-CCEEEEEEECCCCCCC--CCC----------CEEEEEC---------CHHHHHCCCH
T ss_conf             2455545688524420022202-6516999968998866--435----------4799963---------2888863876


Q ss_pred             -CCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -52002528033307999998467702455553220017887655899999
Q gi|254780504|r  199 -TFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLL  248 (492)
Q Consensus       199 -~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHllQlL  248 (492)
                       ++++.+--..-|.-+-+..-..+.+..|..=|-...+.-+++|+-||=.+
T Consensus       116 ~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~~~n~~~~~~L~~eLlP~v  166 (299)
T COG2382         116 PRILDSLIAAGEIPPAILVGIDYIDVKKRREELHCNEAYWRFLAQELLPYV  166 (299)
T ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             899999997087888469811877789999882560899999998866642


No 94 
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=22.25  E-value=30  Score=14.61  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=17.1

Q ss_pred             CHHHHHHHHHHHHHHCCHHHEEECCCHHHH
Q ss_conf             988999999999873896883512420125
Q gi|254780504|r  156 NLSSAQEIHAITRKIFKESQIFRIDHYLGK  185 (492)
Q Consensus       156 Dl~SA~eLn~~l~~~f~E~qiyRIDHYLGK  185 (492)
                      .++-.+++   |...+.---.+||||-||-
T Consensus       428 gy~~f~~~---lra~mr~aG~lRIDHvmGL  454 (694)
T PRK11052        428 AYQPFIDL---LRANMQNCGALRIDHVMSL  454 (694)
T ss_pred             CCHHHHHH---HHHHHHHCCCEEHHHHHHH
T ss_conf             74899999---9999876596210456642


No 95 
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742   This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=21.91  E-value=45  Score=13.29  Aligned_cols=66  Identities=20%  Similarity=0.084  Sum_probs=39.9

Q ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC--EE
Q ss_conf             9864435667657799999997289875781799998886998899999999998742346799899998985165--78
Q gi|254780504|r   15 IFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIF--YI   92 (492)
Q Consensus        15 IFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~--Y~   92 (492)
                      ==||.|-.|-|+       |.+  +-.+ -+-|||+||+.|+.=+-...|-+-  ..++-....++.-++|+++++  |.
T Consensus       112 RTGAAGGvaaKY-------LAr--kdss-v~G~iGaG~QA~tQL~Al~rVfd~--eeV~~y~rt~~~~~kF~~~~skd~~  179 (327)
T TIGR02371       112 RTGAAGGVAAKY-------LAR--KDSS-VLGLIGAGRQAYTQLEALSRVFDL--EEVKVYSRTKEAAEKFVKRASKDYE  179 (327)
T ss_pred             HCCCCHHHHHHH-------HHH--CCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf             003202455554-------430--1663-355763685799999998762554--5069986176889999987520246


No 96 
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=21.82  E-value=50  Score=12.96  Aligned_cols=35  Identities=9%  Similarity=0.185  Sum_probs=24.3

Q ss_pred             CCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCC
Q ss_conf             85867857775513346885179999985488643
Q gi|254780504|r  328 NPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTI  362 (492)
Q Consensus       328 n~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~  362 (492)
                      +=+|+|+|.+=--++.+..=+-+|=++|.+.|+.+
T Consensus        68 ~v~F~G~dl~~L~~~~~rafrR~vQlvFQD~~sav  102 (267)
T TIGR02769        68 EVSFRGQDLSKLDRKQRRAFRRDVQLVFQDSPSAV  102 (267)
T ss_pred             EEEECCCCHHHCCHHHCCEEEEEEEEEEECCCCCC
T ss_conf             04762564555081102111213678987474311


No 97 
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process.
Probab=21.73  E-value=39  Score=13.78  Aligned_cols=29  Identities=28%  Similarity=0.576  Sum_probs=22.2

Q ss_pred             CCCEEEEEE-CCCCCCCEEEEEEEEE-CCCC
Q ss_conf             785777551-3346885179999985-4886
Q gi|254780504|r  332 SGIPFYLRT-GKYLAKHISEIVIALK-PAPC  360 (492)
Q Consensus       332 ~gVPF~lrt-GK~l~~k~~eI~i~FK-~~p~  360 (492)
                      ++|||.++- |=++++.+-||.=.|. +||+
T Consensus       147 aDvpffv~GY~~A~AtG~GE~i~~~~e~P~e  177 (322)
T TIGR00154       147 ADVPFFVSGYGTAFATGRGEIITPLEEEPPE  177 (322)
T ss_pred             CCCEEEECCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             9830786363312112344250578889874


No 98 
>PRK12493 magnesium chelatase; Provisional
Probab=21.58  E-value=51  Score=12.93  Aligned_cols=40  Identities=20%  Similarity=0.420  Sum_probs=19.9

Q ss_pred             HHHHCC-CCEEEEEEEEEECCCCHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf             025280-333079999984677024555---5322001788765589
Q gi|254780504|r  202 ESLWNN-KYIDHVQITTAETIGVEDRVD---YYNNTGALRDMIQNHL  244 (492)
Q Consensus       202 e~~WNr-~~I~~VqIt~~E~~gvegR~~---yyD~~GaiRDmvQNHl  244 (492)
                      +|+|+. .-|..++|.=.|++|   |-.   -.--+|+.||++.|-+
T Consensus       993 rPvwd~~GRV~g~elIPL~ELG---RPRIDVvv~iSGiFRD~fp~~i 1036 (1318)
T PRK12493        993 RPVPDELGRVNKVELIPLEELG---RPRIDVVVTCSGIFRDLFINQM 1036 (1318)
T ss_pred             CCCCCCCCCCCCEEEECHHHCC---CCCEEEEEEECCHHHHHHHHHH
T ss_conf             4110688867733886689919---9985799960504476678999


No 99 
>PRK01060 endonuclease IV; Provisional
Probab=21.25  E-value=35  Score=14.12  Aligned_cols=21  Identities=33%  Similarity=0.635  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCCCEEEEEECC
Q ss_conf             999970858678577755133
Q gi|254780504|r  322 IKANIDNPRWSGIPFYLRTGK  342 (492)
Q Consensus       322 ~~l~idn~RW~gVPF~lrtGK  342 (492)
                      .+..++.+|++++|++|.|=+
T Consensus       242 f~~~~~~~~~~~iP~ILETP~  262 (281)
T PRK01060        242 LRYIVHDPRFDGIPKILETPY  262 (281)
T ss_pred             HHHHHCCHHHCCCCEEEECCC
T ss_conf             999980952549988996899


No 100
>KOG3559 consensus
Probab=21.18  E-value=40  Score=13.66  Aligned_cols=14  Identities=21%  Similarity=0.268  Sum_probs=7.6

Q ss_pred             CCCEEEEEEEEEEC
Q ss_conf             03330799999846
Q gi|254780504|r  207 NKYIDHVQITTAET  220 (492)
Q Consensus       207 r~~I~~VqIt~~E~  220 (492)
                      .++|.+|.-+..|.
T Consensus       317 ~~fivSvnyVls~~  330 (598)
T KOG3559         317 PHFIVSVNYVLSEL  330 (598)
T ss_pred             CEEEEEEEEEEEHH
T ss_conf             40577665652001


No 101
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=20.88  E-value=48  Score=13.09  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             CCCEEEEEECCCCCCCEEEEEEEEEC
Q ss_conf             78577755133468851799999854
Q gi|254780504|r  332 SGIPFYLRTGKYLAKHISEIVIALKP  357 (492)
Q Consensus       332 ~gVPF~lrtGK~l~~k~~eI~i~FK~  357 (492)
                      ++|||.|..|-++++.+-|+...+-+
T Consensus       136 aDVPffl~g~tA~a~G~GE~l~~~~~  161 (289)
T COG1947         136 ADVPFFLSGGTAFAEGRGEKLEPLED  161 (289)
T ss_pred             CCCCEEEECCCEEEEECCCEEEECCC
T ss_conf             98671431885698873635147777


No 102
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74  E-value=53  Score=12.81  Aligned_cols=67  Identities=22%  Similarity=0.400  Sum_probs=33.2

Q ss_pred             EEEECCCCCCCCCEECCCCC-CCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf             36521366776873433410-1479886648743899999708586785777551334688517999998548864376
Q gi|254780504|r  287 TVRGQYQSGIINGIPVKGYL-EEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFD  364 (492)
Q Consensus       287 ~v~GQY~~~~~~~~~v~gY~-~e~~v~~S~TeTfaa~~l~idn~RW~gVPF~lrtGK~l~~k~~eI~i~FK~~p~~~f~  364 (492)
                      +.+-|-...-.++.+. -|- .+--|.+-+     ..--.|+     ||||||..-.--.=|.|+..|---+--+.+|.
T Consensus        27 vmFHQSGGCCDGSsPM-CYP~~~fivGd~D-----vlLG~i~-----gvPvyIs~~QyeaWKHTqLIIDVVpGRGGmFS   94 (116)
T COG3564          27 VMFHQSGGCCDGSSPM-CYPRADFIVGDND-----VLLGEID-----GVPVYISGPQYEAWKHTQLIIDVVPGRGGMFS   94 (116)
T ss_pred             EEEECCCCCCCCCCCC-CCCCCCEEECCCC-----EEEEEEC-----CEEEEECCCHHHHHHCCEEEEEEECCCCCEEE
T ss_conf             7883268845899874-0145445664773-----5886537-----87788647077521001789998659886457


No 103
>PRK02509 hypothetical protein; Provisional
Probab=20.74  E-value=19  Score=15.98  Aligned_cols=44  Identities=11%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             999999879833586989999845884699998873489874579889971889
Q gi|254780504|r  424 RLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQS  477 (492)
Q Consensus       424 ~Ll~D~i~Gd~tlF~r~dEve~sWrivdpiL~~~~~~~~~~~~Y~~GS~GP~~a  477 (492)
                      +..-||.+|+-++++-.++        |||+++|+  +.-|..+.+-|..|.+-
T Consensus       725 KavVDAYdG~V~~Y~~D~~--------DPil~tw~--kiFP~lfkp~s~mp~~L  768 (980)
T PRK02509        725 KVVIDAYNGDVKFYIVDPN--------DPIIQTWS--KIFPQLFKPLSAMPPSL  768 (980)
T ss_pred             EEEEECCCCEEEEEECCCC--------CHHHHHHH--HHCCHHCCCHHHCCHHH
T ss_conf             8999755880799970898--------85999999--86844039846689999


No 104
>pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity.
Probab=20.73  E-value=41  Score=13.62  Aligned_cols=15  Identities=40%  Similarity=0.820  Sum_probs=8.9

Q ss_pred             EEEEECCCCCCCCEE
Q ss_conf             999970858678577
Q gi|254780504|r  322 IKANIDNPRWSGIPF  336 (492)
Q Consensus       322 ~~l~idn~RW~gVPF  336 (492)
                      +++.||+.+|.|.++
T Consensus        84 I~VeId~~~w~G~~v   98 (126)
T pfam04076        84 IKVDIDDRVWNGQEV   98 (126)
T ss_pred             EEEEECHHHCCCCCC
T ss_conf             999968888389817


No 105
>pfam03767 Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase). This family proteins includes acid phosphatases and a number of vegetative storage proteins.
Probab=20.65  E-value=53  Score=12.80  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHH-HHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             7998999989851657864678977899888874057678469984069568-666777777725876443577605667
Q gi|254780504|r   76 EYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAF-FGKISQRIHANNLVTEHTRVVLEKPIG  154 (492)
Q Consensus        76 ~~~~~~~~~F~~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~-f~~i~~~L~~~~l~~~~~RiViEKPFG  154 (492)
                      .+++..|++++..-.--.+    +...+.++.+.+   ....|||++=-+.- .....+||.+.|. .+|.++++-- .+
T Consensus       104 ~~~~~~~~~wv~~~~apai----pg~l~l~~~~~~---~Gvkif~lT~R~e~~r~~T~~NL~~~G~-~~w~~Lilr~-~~  174 (230)
T pfam03767       104 PFDPEKFDEWVNKGEAPAL----PGALELYNYLVE---LGVKIFFVSGRSEDLRAATVENLKKAGF-HGWEKLILRG-KK  174 (230)
T ss_pred             CCCHHHHHHHHHCCCCCCC----HHHHHHHHHHHH---CCCEEEEECCCCHHHHHHHHHHHHHCCC-CCCHHHHCCC-CC
T ss_conf             5780658999961768677----359999999997---7927999728737888987999997599-9845663668-65


Q ss_pred             CCHHHHHHHHHHHHHHCCHHHEEECCCHHHH
Q ss_conf             8988999999999873896883512420125
Q gi|254780504|r  155 SNLSSAQEIHAITRKIFKESQIFRIDHYLGK  185 (492)
Q Consensus       155 ~Dl~SA~eLn~~l~~~f~E~qiyRIDHYLGK  185 (492)
                      ..-.||.+-...-.+. -+++=|||=-..|-
T Consensus       175 ~~~~~~~~yKs~~R~~-l~~~GYrIvg~iGD  204 (230)
T pfam03767       175 DSNKSATSYKSERRKK-LVKKGYNIVGNIGD  204 (230)
T ss_pred             CCCCCCCCCCHHHHHH-HHHCCCEEEEEECC
T ss_conf             4688540000899999-99769879998678


No 106
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=20.54  E-value=53  Score=12.78  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             CCCEEEEEEECCCC----CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             57817999988869----9889999999999874234679989999898
Q gi|254780504|r   42 QISSRIIGICRIKM----TVESYRSFVDKELQRYLKDGEYNPLKVQKFL   86 (492)
Q Consensus        42 ~~~~~IiG~aR~~~----~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~   86 (492)
                      +....|||+|.+++    .+..+++.+.+++.....+...+...++.++
T Consensus         3 ~r~vAIvGvG~t~f~~~~~~~s~~~L~~eA~~~Al~DAGl~~~dID~~~   51 (391)
T PRK08313          3 KRLAAVLGTGQTKYVAKRQDVSMAGLVREAIDRALADAGLTFDDIDAVV   51 (391)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEE
T ss_conf             8988999986588888999979999999999999997499989989999


No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=20.47  E-value=53  Score=12.77  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=8.8

Q ss_pred             HHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             9999987983358698999984
Q gi|254780504|r  425 LLMDIIHANQTLFMGYDEVEET  446 (492)
Q Consensus       425 Ll~D~i~Gd~tlF~r~dEve~s  446 (492)
                      +|.++++..+--.+=.||+|.+
T Consensus       548 ~Lte~Vr~~PysVvL~DEIEKA  569 (758)
T PRK11034        548 LLTDAVIKHPHAVLLLDEIEKA  569 (758)
T ss_pred             CCCHHHHHCCCEEEEEHHHHHH
T ss_conf             0128787398779973367563


No 108
>KOG0672 consensus
Probab=20.38  E-value=53  Score=12.76  Aligned_cols=41  Identities=20%  Similarity=0.194  Sum_probs=24.5

Q ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             98987899864435667657799999997289875781799
Q gi|254780504|r    8 IHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRII   48 (492)
Q Consensus         8 ~~~~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~Ii   48 (492)
                      .+.---|+|||||-+|.-|+=+-.=.|+.-..-.....++|
T Consensus        17 ~d~K~hvL~gaTGSvA~iK~~~li~kL~ei~G~dki~iqvv   57 (218)
T KOG0672          17 DDGKFHVLLGATGSVAVIKLPLLIKKLEEIYGRDKISIQVV   57 (218)
T ss_pred             CCCCEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             78864699971363000025889999998617762369999


No 109
>pfam02576 DUF150 Uncharacterized BCR, YhbC family COG0779.
Probab=20.31  E-value=54  Score=12.75  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=26.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCHHHEE
Q ss_conf             357760566789889999999998738968835
Q gi|254780504|r  145 TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIF  177 (492)
Q Consensus       145 ~RiViEKPFG~Dl~SA~eLn~~l~~~f~E~qiy  177 (492)
                      .||.|+++=|-+++-+..+++.+...++++..+
T Consensus        27 l~I~iD~~~gv~iddc~~~Sr~i~~~Ld~~d~~   59 (141)
T pfam02576        27 LRIYIDKDGGVTLDDCEEVSRAISALLDVEDPI   59 (141)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999998999978999999999998775126666


No 110
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=20.30  E-value=19  Score=16.00  Aligned_cols=161  Identities=17%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             HHHCCCCCCCEEEEECCCHHHHHHHHH-------HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHEE--
Q ss_conf             874057678469984069568666777-------77772587644357760566789889999999998738968835--
Q gi|254780504|r  107 KLLDIDKTRIRVFYLAMSSAFFGKISQ-------RIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIF--  177 (492)
Q Consensus       107 ~~l~~~~~~~rifYLAiPP~~f~~i~~-------~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~~f~E~qiy--  177 (492)
                      ..++..+...-+.-.++|-+.|+.|-.       .|...+...+-.-.+==|-.-.|-+|-..+.+..-..|+=|.+-  
T Consensus        46 DnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~  125 (330)
T COG2502          46 DNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPD  125 (330)
T ss_pred             CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHEEEECCCCHHHHCCC
T ss_conf             55557514358887536873446768889998888986387678724652110378733445302278521136442587


Q ss_pred             --ECCCHHHHHHHHHHH-HHHHCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --124201256877778-87747752002528033307999998467702455553220017887655899999998718
Q gi|254780504|r  178 --RIDHYLGKEAVQGLM-VFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLCLVAME  254 (492)
Q Consensus       178 --RIDHYLGKe~vqnil-~lRFaN~~~e~~WNr~~I~~VqIt~~E~~gvegR~~yyD~~GaiRDmvQNHllQlL~lvAMe  254 (492)
                        |==-|| |++|..|. ++|-+-.-.+...+-.-+=--+||+--+--.+.|  |                         
T Consensus       126 g~rNl~yL-K~tV~kIY~~ir~te~av~~~~~~~~~LP~~ItFihseeL~~r--y-------------------------  177 (330)
T COG2502         126 GDRNLAYL-KSTVEKIYAAIRETELAVSAEFGLAPFLPDQITFIHSQELVAR--Y-------------------------  177 (330)
T ss_pred             CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHH--C-------------------------
T ss_conf             54037999-9999999999999999998652876458761579636999976--8-------------------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCCCEECCCC
Q ss_conf             544588589999999999730688811223613652136677687343341
Q gi|254780504|r  255 MPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGY  305 (492)
Q Consensus       255 ~P~~~~~~~ir~eK~kvlk~~r~~~~~~v~~~~v~GQY~~~~~~~~~v~gY  305 (492)
                        ..+++..=-++-.|-+.|+=.+.        +=|--..|..++-..|.|
T Consensus       178 --P~L~~k~RE~ai~Ke~gAvFlig--------IGg~LsdG~~hd~RaPdY  218 (330)
T COG2502         178 --PDLDPKGRERAIAKELGAVFLIG--------IGGKLSDGKPHDVRAPDY  218 (330)
T ss_pred             --CCCCCCHHHHHHHHHHCCEEEEE--------CCCCCCCCCCCCCCCCCC
T ss_conf             --89993024678998638389984--------165069999577889986


No 111
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719   DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks.   AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , .  Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2.     Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=20.27  E-value=9.4  Score=18.17  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             EEEEEEEECCCCCCCCEEEEEEC
Q ss_conf             38999997085867857775513
Q gi|254780504|r  319 FVAIKANIDNPRWSGIPFYLRTG  341 (492)
Q Consensus       319 faa~~l~idn~RW~gVPF~lrtG  341 (492)
                      |.+.+..+..+||+|.|.||-|=
T Consensus       271 ~d~f~~~~~d~~~~~iP~~LETP  293 (318)
T TIGR00587       271 FDAFRLLMQDERLKGIPIILETP  293 (318)
T ss_pred             HHHHHHHHCCCCCCCCCCEEECC
T ss_conf             68899974373101588366468


Done!