HHsearch results for GI: 254780504 and protein with PDBid: 3gdo_A
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=96.35 E-value=0.051 Score=32.87 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=94.3
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 87899864435667657799999997289875781799998886998899999999998742346799899998985165
Q gi|254780504|r 11 SDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIF 90 (492)
Q Consensus 11 ~~lVIFGATGDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~ 90 (492)
-.+-|.| +|.-+++...|++ ... + .+.|+++.-+. .+.+. +++ .. ..
T Consensus 6 ikigiIG-~G~~~~~~~~~~~------~~~-~-~~~l~~v~~~~--~~~~~-------~~~-~~--------------~~ 52 (358)
T 3gdo_A 6 IKVGILG-YGLSGSVFHGPLL------DVL-D-EYQISKIMTSR--TEEVK-------RDF-PD--------------AE 52 (358)
T ss_dssp EEEEEEC-CSHHHHHTTHHHH------TTC-T-TEEEEEEECSC--HHHHH-------HHC-TT--------------SE
T ss_pred CEEEEEE-CCHHHHHHHHHHH------HCC-C-CCEEEEEECCC--HHHHH-------HHC-CC--------------CC
T ss_conf 6799990-9699999999998------238-9-90899994889--99999-------867-99--------------83
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 78646789778998888740576784699840695686667777777258764435776056678988999999999873
Q gi|254780504|r 91 YINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKI 170 (492)
Q Consensus 91 Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~~~~RiViEKPFG~Dl~SA~eLn~~l~~~ 170 (492)
. |..+.++++..+ .=+.+.++||..=..++...-++| .=|.+|||++.+++.|++|.+...+.
T Consensus 53 ~----------~~s~~ell~~~~--~DaV~i~tp~~~H~~~~~~al~~g-----k~V~~EKPla~~~~ea~~l~~~a~~~ 115 (358)
T 3gdo_A 53 V----------VHELEEITNDPA--IELVIVTTPSGLHYEHTMACIQAG-----KHVVMEKPMTATAEEGETLKRAADEK 115 (358)
T ss_dssp E----------ESSTHHHHTCTT--CCEEEECSCTTTHHHHHHHHHHTT-----CEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred E----------ECCHHHHHCCCC--CCEEEECCCHHHHHHHHHHHHHCC-----CEEEEECEEHHHHHHHHHHHHHHHHC
T ss_conf 5----------399999965999--999998897688999999998659-----98986120001036789999987624
Q ss_pred CCHHHEEECCC-HHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEECCC-CHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf 89688351242-01256877778877477520025280333079999984677-02455553--2200178876558999
Q gi|254780504|r 171 FKESQIFRIDH-YLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIG-VEDRVDYY--NNTGALRDMIQNHLLQ 246 (492)
Q Consensus 171 f~E~qiyRIDH-YLGKe~vqnil~lRFaN~~~e~~WNr~~I~~VqIt~~E~~g-vegR~~yy--D~~GaiRDmvQNHllQ 246 (492)
= -.+.+-| +.--+.+|-+--+--.+.+-+ |.++.+....... ......+. ...|++.|+.- |.+.
T Consensus 116 ~---~~~~v~~~~r~~p~~~~~k~~i~~G~lG~-------i~~~~~~~~~~~~~~~~~~~~~~~~~gG~l~~~g~-H~~d 184 (358)
T 3gdo_A 116 G---VLLSVYHNRRWDNDFLTIKKLISEGSLED-------INTYQVSYNRYRPEVQARWREKEGTATGTLYDLGS-HIID 184 (358)
T ss_dssp T---CCEEEECGGGGSHHHHHHHHHHHTTSSCS-------CCEEEEECCCBCCCC----------CCSHHHHTHH-HHHH
T ss_pred C---EEEEEEECCCCCCCCCCHHHHHCCCCCCC-------CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHH
T ss_conf 5---15654100013664320233430477676-------32000012235774322223444468863530536-7999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780504|r 247 LLCLV 251 (492)
Q Consensus 247 lL~lv 251 (492)
++..+
T Consensus 185 ~~~~l 189 (358)
T 3gdo_A 185 QTLHL 189 (358)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997