HHSEARCH alignment of GI: 254780504 and SCOP domain: d2nvwa1

Alignment
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=97.28  E-value=0.002  Score=41.19  Aligned_cols=204  Identities=10%  Similarity=0.094  Sum_probs=102.3

Q ss_pred             CCCCCCCEEEECCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             98989878998644--3566765779999999728987578179999888699889999999999874234679989999
Q gi|254780504|r    6 PNIHNSDFIIFGGT--GDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKDGEYNPLKVQ   83 (492)
Q Consensus         6 p~~~~~~lVIFGAT--GDLA~RKL~PALf~L~~~~~l~~~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~   83 (492)
                      |+..|-.+-|.|+.  |.-+.+.-+||+-++      .+ ++.|++++-.  +.+.-    .+..+++....        
T Consensus        12 ~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~------~~-~~~ivav~d~--~~~~~----~~~~~~~~~~~--------   70 (237)
T d2nvwa1          12 PSSRPIRVGFVGLTSGKSWVAKTHFLAIQQL------SS-QFQIVALYNP--TLKSS----LQTIEQLQLKH--------   70 (237)
T ss_dssp             GGGCCEEEEEECCCSTTSHHHHTHHHHHHHT------TT-TEEEEEEECS--CHHHH----HHHHHHTTCTT--------
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHHC------CC-CEEEEEEECC--CHHHH----HHHHHHCCCCC--------
T ss_conf             9999708999966863408999999999846------99-8599999919--99999----99998603665--------


Q ss_pred             HHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHH
Q ss_conf             89851657864678977899888874057678469984069568666777777725876-44357760566789889999
Q gi|254780504|r   84 KFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVT-EHTRVVLEKPIGSNLSSAQE  162 (492)
Q Consensus        84 ~F~~~~~Y~~~d~~~~~~y~~L~~~l~~~~~~~rifYLAiPP~~f~~i~~~L~~~~l~~-~~~RiViEKPFG~Dl~SA~e  162 (492)
                           .    -.|++   |+.+   ++..  ..-+.|.++||..-..++...-++|... ...-|.+|||++.+++.+++
T Consensus        71 -----~----~~~~~---~~~l---~~~~--~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~  133 (237)
T d2nvwa1          71 -----A----TGFDS---LESF---AQYK--DIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEE  133 (237)
T ss_dssp             -----C----EEESC---HHHH---HHCT--TCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHH
T ss_pred             -----C----EEECC---HHHC---CCCC--CCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf             -----2----36435---2230---1112--2101102588710114799999736022578449994555477999999


Q ss_pred             HHHHHHHHCC----HHHEEECCCHH--HHHHHHHHHHH-HHCCCCCHHHHCCCCEEEEEEEEEECCCC----HHHHHHHH
Q ss_conf             9999987389----68835124201--25687777887-74775200252803330799999846770----24555532
Q gi|254780504|r  163 IHAITRKIFK----ESQIFRIDHYL--GKEAVQGLMVF-RFANTFYESLWNNKYIDHVQITTAETIGV----EDRVDYYN  231 (492)
Q Consensus       163 Ln~~l~~~f~----E~qiyRIDHYL--GKe~vqnil~l-RFaN~~~e~~WNr~~I~~VqIt~~E~~gv----egR~~yyD  231 (492)
                      |-+...+.-.    ...-||-+-..  -|+.++++... +++.           |.+++++.....-.    ..+..-++
T Consensus       134 l~~~a~~~~~~~~~v~~~~R~~p~~~~~k~~i~~~~~~g~iG~-----------v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (237)
T d2nvwa1         134 LYSISQQRANLQTIICLQGRYNSVVGNILRIYESIADYHFLGK-----------PESKSSRGPDDLFASTKFDKQGFRFE  202 (237)
T ss_dssp             HHHHHHTCTTCEEEEECGGGCCHHHHHHHHHHHHHHHHHHC-----------------------------CCCCCTTCSS
T ss_pred             HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCHHCCEECC-----------EEEEEEEECCCCCCCCCHHCCCCCCC
T ss_conf             9998763488069999777688899999999982212685538-----------89999997276666861202473003


Q ss_pred             HHHHHHHHH-HHHHHHHHHH-HHCCCCCC
Q ss_conf             200178876-5589999999-87185445
Q gi|254780504|r  232 NTGALRDMI-QNHLLQLLCL-VAMEMPPS  258 (492)
Q Consensus       232 ~~GaiRDmv-QNHllQlL~l-vAMe~P~~  258 (492)
                      ..|++-|.. -.|++..+-. -.|+...+
T Consensus       203 ~~g~~~~~~i~~h~id~v~~~~~~~~~~d  231 (237)
T d2nvwa1         203 GFPTFKDAIILHRLIDAVFRSDKEEKTLD  231 (237)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTBCEE
T ss_pred             CCCEEHHHHHHCHHCCCCCCCCCCCCCEE
T ss_conf             79903465654303300110256677430


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]