RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (492 letters) >gnl|CDD|30713 COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]. Length = 483 Score = 555 bits (1431), Expect = e-158 Identities = 226/485 (46%), Positives = 300/485 (61%), Gaps = 13/485 (2%) Query: 9 HNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKEL 68 D +IFG TGDLA+RKLFPALY Y + RIIG+ R K + E +R+ V + + Sbjct: 6 EPFDLVIFGATGDLARRKLFPALYRLYKEGLLPE-DFRIIGVARSKWSNEEFRALVREAI 64 Query: 69 QRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFF 128 + K E + ++F S + Y++ D + ++ L LL + RVFYLA+ + F Sbjct: 65 -EFAKTEEIDEAVWEEFASRLSYVSGDYDDPESFDELKDLLG-ELEGNRVFYLAVPPSLF 122 Query: 129 GKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAV 188 G I++ + L + R+V+EKP G +L+SA+E++ +FKE QI+RIDHYLGKE V Sbjct: 123 GTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQISAVFKEEQIYRIDHYLGKETV 182 Query: 189 QGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLL 248 Q L+ RFAN +E LWN YIDHVQIT AET+GVE R YY+ GALRDM+QNHLLQLL Sbjct: 183 QNLLALRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDKAGALRDMVQNHLLQLL 242 Query: 249 CLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEE 308 CLVAME P S A I++EK+KVL+AL+ I+ ENV++ TVRGQY +G I+G V GYLEE Sbjct: 243 CLVAMEPPASFSADDIRDEKVKVLKALRPISEENVKEDTVRGQYTAGEIDGKKVPGYLEE 302 Query: 309 I-PLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQM 367 S+TETFVAIK IDN RW+G+PFYLRTGK L K ++EIVI K P +F Sbjct: 303 EGVAKDSNTETFVAIKLEIDNWRWAGVPFYLRTGKRLPKKVTEIVIHFKRVPHNLFSDPS 362 Query: 368 -SKIETNKLILRLQNNGEIEQFITTKDHSTS--NMKLKTTALRICCCSKRIKRTPDGYER 424 S +E N+L++R+Q + I K L + R P+ YER Sbjct: 363 RSSLEQNRLVIRIQPDEGISLKFNVKVPGLGLQTRPLDLDFSY----DSKFMRIPEAYER 418 Query: 425 LLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKD 484 LL+D I +QTLF+ DEVE WK D IL++W+ N Y AG+WGP +D LL++D Sbjct: 419 LLLDAIRGDQTLFVRRDEVEAAWKIVDPILEAWK--NDPPPPYEAGSWGPKAADELLERD 476 Query: 485 GRRWH 489 GR W Sbjct: 477 GREWR 481 >gnl|CDD|35783 KOG0563, KOG0563, KOG0563, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]. Length = 499 Score = 354 bits (911), Expect = 2e-98 Identities = 176/487 (36%), Positives = 271/487 (55%), Gaps = 17/487 (3%) Query: 13 FIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYL 72 I+FG +GDLAK+K+FPAL+ Y +I G R K+T E R + + L+ Sbjct: 20 IIVFGASGDLAKKKIFPALFALYR-EGLLPEDFKIFGYARSKLTDEELRKSISETLKC-R 77 Query: 73 KDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDI-----DKTRIRVFYLAMSSAF 127 KD + K++ FL + Y++ + G++ L K ++ + R+FYLA+ + Sbjct: 78 KDEKNCGEKLEDFLKRVSYVSGQYDTAEGFQELNKHIEEHEKEANSEANRIFYLALPPSV 137 Query: 128 FGKISQRIHANNL-VTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKE 186 + +++ I + V TRV++EKP G +L SAQE+ + K+F E QI+RIDHYLGKE Sbjct: 138 YVDVAKNIKKSCSSVNGWTRVIVEKPFGRDLESAQELSSELGKLFDEEQIYRIDHYLGKE 197 Query: 187 AVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQ 246 VQ L+V RFAN +E LWN YI+ VQI E G E R Y++ G +RD++QNHLLQ Sbjct: 198 LVQNLLVLRFANRIFEPLWNRDYIESVQIVFKEDFGTEGRGGYFDEYGIIRDVVQNHLLQ 257 Query: 247 LLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYL 306 +L LVAME P S++A+ I++EK+KVL++++ + E+V V GQY+S +P Sbjct: 258 ILTLVAMEKPKSLDAEDIRDEKVKVLKSIRPVDLEDV----VLGQYKSSSDGKVPGYLDD 313 Query: 307 EEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQ 366 + +P S T TF A+ +IDN RW G+PF LR GK L + +EI I K P +F Sbjct: 314 KTVPKD-SLTPTFAAVALHIDNERWEGVPFILRAGKALNERKAEIRIQFKAVPGGLF-SD 371 Query: 367 MSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDGYERLL 426 + + N+L++R+Q + + I K ++ + + PD YERL+ Sbjct: 372 VRDCKRNELVIRVQPDEAVYLKINIKQPGLGMQPDESELDLLYSDRYKDVEIPDAYERLI 431 Query: 427 MDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKDGR 486 +D I +QT F+ DE+E WK +L+ + K + Y G+ GP ++D L++K G Sbjct: 432 LDAIRGDQTHFVRSDELEAAWKIFTPLLEEIEKKKPKPEPYPYGSRGPKEADELMKKHGT 491 Query: 487 R---WHN 490 W + Sbjct: 492 HGYKWPD 498 >gnl|CDD|145765 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal domain. Length = 294 Score = 305 bits (782), Expect = 2e-83 Identities = 124/305 (40%), Positives = 173/305 (56%), Gaps = 22/305 (7%) Query: 192 MVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLCLV 251 +V RF N + LWN ID+VQIT E G E R Y++ G +RDM+QNHLLQ+LCLV Sbjct: 1 LVLRFGNEIFNPLWNRDNIDNVQITFKEPFGTEGRGGYFDEFGIIRDMMQNHLLQILCLV 60 Query: 252 AMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEE--I 309 AME P S A+ I++EK+KVL+AL+ I ++V V GQY +G G GYLE+ + Sbjct: 61 AMEKPVSFSAEDIRDEKVKVLKALRPIDEDDV----VLGQYGAGEDGGKAKPGYLEDPTV 116 Query: 310 PLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSK 369 P S+TETF A +IDN RW G+PFYLR GK L + +EI I K P IF Q Sbjct: 117 PAD-SNTETFAAGVLHIDNERWEGVPFYLRAGKALNERKAEIRIQFKDVPGDIFSEQ--- 172 Query: 370 IETNKLILRLQNNGEIEQFITTK----DHSTSNMKLKTTALRICCCSKRIK--RTPDGYE 423 N+L++R+Q + I + K +T +L T S R K + P+ YE Sbjct: 173 APRNELVIRVQPDEAIYLKMNAKSPGLSFNTRETELDLTY------SDRYKDFKIPEAYE 226 Query: 424 RLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQK 483 RL++D + +Q+ F+ DE+E WK IL + + K + Y G+ GP ++D LL + Sbjct: 227 RLILDTMCGDQSNFVRRDELEAAWKIFTPILHAIEADKVKPEPYPYGSRGPKEADKLLAR 286 Query: 484 DGRRW 488 +G W Sbjct: 287 NGYVW 291 >gnl|CDD|144172 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding domain. Length = 183 Score = 197 bits (503), Expect = 6e-51 Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 14/186 (7%) Query: 14 IIFGGTGDLAKRKLFPALYNNYTNREENQISS--RIIGICRIKMTVESYRSFVDKELQRY 71 +IFG TGDLAKRKLFPALYN Y E + RI+G+ R + + E +R V + L+++ Sbjct: 1 VIFGATGDLAKRKLFPALYNLY---REGLLPEDFRIVGVARSEWSDEDFRERVREALKKF 57 Query: 72 LKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-IDKTR----IRVFYLAMSSA 126 ++ E + ++FLS + Y++ D + G+E L + L+ ++K R+FYLA+ + Sbjct: 58 VRT-ELDEEVWEEFLSRLSYVSGDYDDPEGYERLAERLEELEKKYGTGGNRLFYLALPPS 116 Query: 127 FFGKISQRIHANNLVTEH---TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYL 183 FG +++ + L E TRVV+EKP G +L SA+E++ +F E QI+RIDHYL Sbjct: 117 VFGTVAENLKKAGLNKEEGGWTRVVIEKPFGHDLESARELNDQLASVFDEDQIYRIDHYL 176 Query: 184 GKEAVQ 189 GKE VQ Sbjct: 177 GKETVQ 182 >gnl|CDD|80310 cd04860, AE_Prim_S, AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its catalytic role in replication, DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. The function of the larger primase subunit is unclear. Included in this group are Pfu41 and Pfu46, these two proteins comprise the primase complex of the archaea Pyrococcus furiosus; Pfu41 and Pfu46 have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the primase activity of Pfu41.. Length = 232 Score = 31.4 bits (71), Expect = 0.58 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 25 RKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVD-KELQRYLKDGEYNPLKVQ 83 LF Y NY + + +R G + SF +EL++YL P V Sbjct: 1 PSLFRYYYLNYGLEIPDYLENREFGFTLFDGVYIRHLSFSSAEELRKYLL--RNVPRAV- 57 Query: 84 KFLSLIFYINLDVEKNYGWELLGKLL--DID 112 + S +Y + GW LG+ L DID Sbjct: 58 -YSSSAYYRKPSAKGEKGW--LGRELVFDID 85 >gnl|CDD|33420 COG3621, COG3621, Patatin [General function prediction only]. Length = 394 Score = 31.1 bits (70), Expect = 0.73 Identities = 12/47 (25%), Positives = 20/47 (42%) Query: 328 NPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNK 374 NP ++ + R +Y +S+I++A AP H I K Sbjct: 144 NPLFTFSTHHARPSRYNNYKLSDIILASTAAPTYFPPHHFENITNTK 190 >gnl|CDD|31350 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]. Length = 463 Score = 30.6 bits (69), Expect = 1.0 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Query: 55 MTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEK--NYGWELLGKLLDID 112 + E S D++ ++ E Q+F+ Y N +E+ + GWELL L + + Sbjct: 390 VVGEEALSERDRKYLKFADLFE------QRFIKQGRYENRSIEETLDLGWELLSILPESE 443 Query: 113 KTRIR 117 TRI+ Sbjct: 444 LTRIK 448 >gnl|CDD|34598 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and metabolism]. Length = 773 Score = 29.9 bits (67), Expect = 1.4 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 274 ALQMITPENVQKLTVRGQYQSGIINGIPVKGYL--EEIPLGISDT 316 L+ I +NV L V Y++G + G E PL + DT Sbjct: 172 PLKQINADNVGNLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDT 216 >gnl|CDD|144386 pfam00765, Autoind_synth, Autoinducer synthetase. Length = 182 Score = 28.1 bits (63), Expect = 6.2 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 57 VESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFY 91 +ES R FVDK R L G P+ + FLS+I Y Sbjct: 91 IESSRFFVDKARARGL-LGNLAPISLMLFLSMINY 124 >gnl|CDD|31017 COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]. Length = 342 Score = 27.9 bits (61), Expect = 7.5 Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 147 VVLEKPIGSNLSSAQEIHAITRK 169 V+ EKP+ L A+E+ + RK Sbjct: 94 VLCEKPLALTLEEAEELVELARK 116 >gnl|CDD|37154 KOG1943, KOG1943, KOG1943, Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]. Length = 1133 Score = 27.7 bits (61), Expect = 8.7 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 12/122 (9%) Query: 232 NTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQ 291 LR ++ L+Q + LV++ P + + L + + + ++ Sbjct: 272 GQSLLRKLLVK-LVQRIGLVSL--KPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQD 328 Query: 292 YQSGIINGIPVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEI 351 G V+ +E + +SDT+T V RWS R L +++ Sbjct: 329 DDEGEDVPEIVEFVIEHLLSALSDTDTVV---------RWSAAKGLGRVTSRLPPELADQ 379 Query: 352 VI 353 VI Sbjct: 380 VI 381 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0707 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,045,043 Number of extensions: 324805 Number of successful extensions: 650 Number of sequences better than 10.0: 1 Number of HSP's gapped: 628 Number of HSP's successfully gapped: 17 Length of query: 492 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 394 Effective length of database: 4,146,055 Effective search space: 1633545670 Effective search space used: 1633545670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.5 bits)