RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate
1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>gnl|CDD|30713 COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate
transport and metabolism].
Length = 483
Score = 555 bits (1431), Expect = e-158
Identities = 226/485 (46%), Positives = 300/485 (61%), Gaps = 13/485 (2%)
Query: 9 HNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKEL 68
D +IFG TGDLA+RKLFPALY Y + RIIG+ R K + E +R+ V + +
Sbjct: 6 EPFDLVIFGATGDLARRKLFPALYRLYKEGLLPE-DFRIIGVARSKWSNEEFRALVREAI 64
Query: 69 QRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFYLAMSSAFF 128
+ K E + ++F S + Y++ D + ++ L LL + RVFYLA+ + F
Sbjct: 65 -EFAKTEEIDEAVWEEFASRLSYVSGDYDDPESFDELKDLLG-ELEGNRVFYLAVPPSLF 122
Query: 129 GKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAV 188
G I++ + L + R+V+EKP G +L+SA+E++ +FKE QI+RIDHYLGKE V
Sbjct: 123 GTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQISAVFKEEQIYRIDHYLGKETV 182
Query: 189 QGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLL 248
Q L+ RFAN +E LWN YIDHVQIT AET+GVE R YY+ GALRDM+QNHLLQLL
Sbjct: 183 QNLLALRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDKAGALRDMVQNHLLQLL 242
Query: 249 CLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEE 308
CLVAME P S A I++EK+KVL+AL+ I+ ENV++ TVRGQY +G I+G V GYLEE
Sbjct: 243 CLVAMEPPASFSADDIRDEKVKVLKALRPISEENVKEDTVRGQYTAGEIDGKKVPGYLEE 302
Query: 309 I-PLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQM 367
S+TETFVAIK IDN RW+G+PFYLRTGK L K ++EIVI K P +F
Sbjct: 303 EGVAKDSNTETFVAIKLEIDNWRWAGVPFYLRTGKRLPKKVTEIVIHFKRVPHNLFSDPS 362
Query: 368 -SKIETNKLILRLQNNGEIEQFITTKDHSTS--NMKLKTTALRICCCSKRIKRTPDGYER 424
S +E N+L++R+Q + I K L + R P+ YER
Sbjct: 363 RSSLEQNRLVIRIQPDEGISLKFNVKVPGLGLQTRPLDLDFSY----DSKFMRIPEAYER 418
Query: 425 LLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKD 484
LL+D I +QTLF+ DEVE WK D IL++W+ N Y AG+WGP +D LL++D
Sbjct: 419 LLLDAIRGDQTLFVRRDEVEAAWKIVDPILEAWK--NDPPPPYEAGSWGPKAADELLERD 476
Query: 485 GRRWH 489
GR W
Sbjct: 477 GREWR 481
>gnl|CDD|35783 KOG0563, KOG0563, KOG0563, Glucose-6-phosphate 1-dehydrogenase
[Carbohydrate transport and metabolism].
Length = 499
Score = 354 bits (911), Expect = 2e-98
Identities = 176/487 (36%), Positives = 271/487 (55%), Gaps = 17/487 (3%)
Query: 13 FIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYL 72
I+FG +GDLAK+K+FPAL+ Y +I G R K+T E R + + L+
Sbjct: 20 IIVFGASGDLAKKKIFPALFALYR-EGLLPEDFKIFGYARSKLTDEELRKSISETLKC-R 77
Query: 73 KDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDI-----DKTRIRVFYLAMSSAF 127
KD + K++ FL + Y++ + G++ L K ++ + R+FYLA+ +
Sbjct: 78 KDEKNCGEKLEDFLKRVSYVSGQYDTAEGFQELNKHIEEHEKEANSEANRIFYLALPPSV 137
Query: 128 FGKISQRIHANNL-VTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKE 186
+ +++ I + V TRV++EKP G +L SAQE+ + K+F E QI+RIDHYLGKE
Sbjct: 138 YVDVAKNIKKSCSSVNGWTRVIVEKPFGRDLESAQELSSELGKLFDEEQIYRIDHYLGKE 197
Query: 187 AVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQ 246
VQ L+V RFAN +E LWN YI+ VQI E G E R Y++ G +RD++QNHLLQ
Sbjct: 198 LVQNLLVLRFANRIFEPLWNRDYIESVQIVFKEDFGTEGRGGYFDEYGIIRDVVQNHLLQ 257
Query: 247 LLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYL 306
+L LVAME P S++A+ I++EK+KVL++++ + E+V V GQY+S +P
Sbjct: 258 ILTLVAMEKPKSLDAEDIRDEKVKVLKSIRPVDLEDV----VLGQYKSSSDGKVPGYLDD 313
Query: 307 EEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQ 366
+ +P S T TF A+ +IDN RW G+PF LR GK L + +EI I K P +F
Sbjct: 314 KTVPKD-SLTPTFAAVALHIDNERWEGVPFILRAGKALNERKAEIRIQFKAVPGGLF-SD 371
Query: 367 MSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDGYERLL 426
+ + N+L++R+Q + + I K ++ + + PD YERL+
Sbjct: 372 VRDCKRNELVIRVQPDEAVYLKINIKQPGLGMQPDESELDLLYSDRYKDVEIPDAYERLI 431
Query: 427 MDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKDGR 486
+D I +QT F+ DE+E WK +L+ + K + Y G+ GP ++D L++K G
Sbjct: 432 LDAIRGDQTHFVRSDELEAAWKIFTPLLEEIEKKKPKPEPYPYGSRGPKEADELMKKHGT 491
Query: 487 R---WHN 490
W +
Sbjct: 492 HGYKWPD 498
>gnl|CDD|145765 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal
domain.
Length = 294
Score = 305 bits (782), Expect = 2e-83
Identities = 124/305 (40%), Positives = 173/305 (56%), Gaps = 22/305 (7%)
Query: 192 MVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLCLV 251
+V RF N + LWN ID+VQIT E G E R Y++ G +RDM+QNHLLQ+LCLV
Sbjct: 1 LVLRFGNEIFNPLWNRDNIDNVQITFKEPFGTEGRGGYFDEFGIIRDMMQNHLLQILCLV 60
Query: 252 AMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEE--I 309
AME P S A+ I++EK+KVL+AL+ I ++V V GQY +G G GYLE+ +
Sbjct: 61 AMEKPVSFSAEDIRDEKVKVLKALRPIDEDDV----VLGQYGAGEDGGKAKPGYLEDPTV 116
Query: 310 PLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSK 369
P S+TETF A +IDN RW G+PFYLR GK L + +EI I K P IF Q
Sbjct: 117 PAD-SNTETFAAGVLHIDNERWEGVPFYLRAGKALNERKAEIRIQFKDVPGDIFSEQ--- 172
Query: 370 IETNKLILRLQNNGEIEQFITTK----DHSTSNMKLKTTALRICCCSKRIK--RTPDGYE 423
N+L++R+Q + I + K +T +L T S R K + P+ YE
Sbjct: 173 APRNELVIRVQPDEAIYLKMNAKSPGLSFNTRETELDLTY------SDRYKDFKIPEAYE 226
Query: 424 RLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQK 483
RL++D + +Q+ F+ DE+E WK IL + + K + Y G+ GP ++D LL +
Sbjct: 227 RLILDTMCGDQSNFVRRDELEAAWKIFTPILHAIEADKVKPEPYPYGSRGPKEADKLLAR 286
Query: 484 DGRRW 488
+G W
Sbjct: 287 NGYVW 291
>gnl|CDD|144172 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding
domain.
Length = 183
Score = 197 bits (503), Expect = 6e-51
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 14/186 (7%)
Query: 14 IIFGGTGDLAKRKLFPALYNNYTNREENQISS--RIIGICRIKMTVESYRSFVDKELQRY 71
+IFG TGDLAKRKLFPALYN Y E + RI+G+ R + + E +R V + L+++
Sbjct: 1 VIFGATGDLAKRKLFPALYNLY---REGLLPEDFRIVGVARSEWSDEDFRERVREALKKF 57
Query: 72 LKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-IDKTR----IRVFYLAMSSA 126
++ E + ++FLS + Y++ D + G+E L + L+ ++K R+FYLA+ +
Sbjct: 58 VRT-ELDEEVWEEFLSRLSYVSGDYDDPEGYERLAERLEELEKKYGTGGNRLFYLALPPS 116
Query: 127 FFGKISQRIHANNLVTEH---TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYL 183
FG +++ + L E TRVV+EKP G +L SA+E++ +F E QI+RIDHYL
Sbjct: 117 VFGTVAENLKKAGLNKEEGGWTRVVIEKPFGHDLESARELNDQLASVFDEDQIYRIDHYL 176
Query: 184 GKEAVQ 189
GKE VQ
Sbjct: 177 GKETVQ 182
>gnl|CDD|80310 cd04860, AE_Prim_S, AE_Prim_S: primase domain similar to that found
in the small subunit of archaeal and eukaryotic (A/E)
DNA primases. Primases are DNA-dependent RNA polymerases
which synthesis the short RNA primers required for DNA
replication. In addition to its catalytic role in
replication, DNA primase may play a role in coupling
replication to DNA damage repair and in checkpoint
control during S phase. In eukaryotes, this small
catalytically active primase subunit (p50) and a larger
primase subunit (p60), referred to jointly as the core
primase, associate with the B subunit and the DNA
polymerase alpha subunit in a complex, called Pol
alpha-pri. The function of the larger primase subunit is
unclear. Included in this group are Pfu41 and Pfu46,
these two proteins comprise the primase complex of the
archaea Pyrococcus furiosus; Pfu41 and Pfu46 have
sequence identity to the eukaryotic p50 and p60 primase
proteins respectively. Pfu41 preferentially uses dNTPs
as substrate. Pfu46 regulates the primase activity of
Pfu41..
Length = 232
Score = 31.4 bits (71), Expect = 0.58
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 25 RKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVD-KELQRYLKDGEYNPLKVQ 83
LF Y NY + + +R G + SF +EL++YL P V
Sbjct: 1 PSLFRYYYLNYGLEIPDYLENREFGFTLFDGVYIRHLSFSSAEELRKYLL--RNVPRAV- 57
Query: 84 KFLSLIFYINLDVEKNYGWELLGKLL--DID 112
+ S +Y + GW LG+ L DID
Sbjct: 58 -YSSSAYYRKPSAKGEKGW--LGRELVFDID 85
>gnl|CDD|33420 COG3621, COG3621, Patatin [General function prediction only].
Length = 394
Score = 31.1 bits (70), Expect = 0.73
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 328 NPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNK 374
NP ++ + R +Y +S+I++A AP H I K
Sbjct: 144 NPLFTFSTHHARPSRYNNYKLSDIILASTAAPTYFPPHHFENITNTK 190
>gnl|CDD|31350 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 30.6 bits (69), Expect = 1.0
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 55 MTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEK--NYGWELLGKLLDID 112
+ E S D++ ++ E Q+F+ Y N +E+ + GWELL L + +
Sbjct: 390 VVGEEALSERDRKYLKFADLFE------QRFIKQGRYENRSIEETLDLGWELLSILPESE 443
Query: 113 KTRIR 117
TRI+
Sbjct: 444 LTRIK 448
>gnl|CDD|34598 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
metabolism].
Length = 773
Score = 29.9 bits (67), Expect = 1.4
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 274 ALQMITPENVQKLTVRGQYQSGIINGIPVKGYL--EEIPLGISDT 316
L+ I +NV L V Y++G + G E PL + DT
Sbjct: 172 PLKQINADNVGNLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDT 216
>gnl|CDD|144386 pfam00765, Autoind_synth, Autoinducer synthetase.
Length = 182
Score = 28.1 bits (63), Expect = 6.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 57 VESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFY 91
+ES R FVDK R L G P+ + FLS+I Y
Sbjct: 91 IESSRFFVDKARARGL-LGNLAPISLMLFLSMINY 124
>gnl|CDD|31017 COG0673, MviM, Predicted dehydrogenases and related proteins
[General function prediction only].
Length = 342
Score = 27.9 bits (61), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 147 VVLEKPIGSNLSSAQEIHAITRK 169
V+ EKP+ L A+E+ + RK
Sbjct: 94 VLCEKPLALTLEEAEELVELARK 116
>gnl|CDD|37154 KOG1943, KOG1943, KOG1943, Beta-tubulin folding cofactor D
[Posttranslational modification, protein turnover,
chaperones].
Length = 1133
Score = 27.7 bits (61), Expect = 8.7
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 12/122 (9%)
Query: 232 NTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQ 291
LR ++ L+Q + LV++ P + + L + + + ++
Sbjct: 272 GQSLLRKLLVK-LVQRIGLVSL--KPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQD 328
Query: 292 YQSGIINGIPVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEI 351
G V+ +E + +SDT+T V RWS R L +++
Sbjct: 329 DDEGEDVPEIVEFVIEHLLSALSDTDTVV---------RWSAAKGLGRVTSRLPPELADQ 379
Query: 352 VI 353
VI
Sbjct: 380 VI 381
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,045,043
Number of extensions: 324805
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 17
Length of query: 492
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 394
Effective length of database: 4,146,055
Effective search space: 1633545670
Effective search space used: 1633545670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)