RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (492 letters) >1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A* Length = 485 Score = 553 bits (1427), Expect = e-158 Identities = 155/489 (31%), Positives = 253/489 (51%), Gaps = 24/489 (4%) Query: 13 FIIFGGTGDLAKRKLFPALYNNYTNREENQISS--RIIGICRIKMTVESYRSFVDKELQR 70 FGGTGDLAKRKL+P+++N Y ++ + I+G R + + ++ V ++ Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLY---KKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKD 64 Query: 71 YLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-----IDKTRIRVFYLAMSS 125 + D + + F+ Y DV + +L + ++ D R+FY++++ Sbjct: 65 FTDDQA----QAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAP 120 Query: 126 AFFGKISQRIHANNLVTE--HTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYL 183 FFG I++ + + L+ + + R+++EKP G++ +A E+ F ++Q+FRIDHYL Sbjct: 121 RFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYL 180 Query: 184 GKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNH 243 GKE VQ + RF N +++ WN YI +VQ+T +E +GVE+R YY+ GAL DMIQNH Sbjct: 181 GKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNH 240 Query: 244 LLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVK 303 +Q++ +AME P S K I+ K AL++ V K VR QY +G + K Sbjct: 241 TMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAG--DSADFK 298 Query: 304 GYLEE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361 YLEE +P S TF+A + D PRW G+PFY+R+GK LA + + I K Sbjct: 299 PYLEELDVPAD-SKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN 357 Query: 362 IFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDG 421 Q + + L + + G IE + K + +T L + K TP+ Sbjct: 358 FGSEQ--EAQEAVLSIIIDPKGAIELKLNAKSVEDA-FNTRTIDLGWTVSDEDKKNTPEP 414 Query: 422 YERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLL 481 YER++ D ++ + + F ++ V WK+ D+I + ++ Y +G+ GP+ SD LL Sbjct: 415 YERMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLL 474 Query: 482 QKDGRRWHN 490 +G W Sbjct: 475 AANGDAWVF 483 >2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* Length = 489 Score = 466 bits (1200), Expect = e-132 Identities = 151/491 (30%), Positives = 251/491 (51%), Gaps = 22/491 (4%) Query: 9 HNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQIS--SRIIGICRIKMTVESYRSFVDK 66 FII G +GDLAK+K++P ++ + + + + I+G R ++TV R K Sbjct: 4 DTHIFIIMGASGDLAKKKIYPTIWWLF---RDGLLPENTFIVGYARSRLTVADIR----K 56 Query: 67 ELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD---IDKTRIRVFYLAM 123 + + + K LK++ F + Y+ + ++ L ++ + R+FYLA+ Sbjct: 57 QSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLAL 116 Query: 124 SSAFFGKISQRIHANNLV-TEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHY 182 + +++ IH + + R+++EKP G +L S+ + +F+E QI+RIDHY Sbjct: 117 PPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHY 176 Query: 183 LGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQN 242 LGKE VQ LMV RFAN + +WN I V +T E G E R Y++ G +RD++QN Sbjct: 177 LGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQN 236 Query: 243 HLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPV 302 HLLQ+LCLVAME P S + +++EK+KVL+ + + NV G G Sbjct: 237 HLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPD---GEGEAT 293 Query: 303 KGYLEEI-PLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361 KGYL++ S T TF A+ ++N RW G+PF LR GK L + +E+ + Sbjct: 294 KGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGD 353 Query: 362 IFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRIC-CCSKRIKRTPD 420 IF Q + N+L++R+Q N + + TK + + L + + + PD Sbjct: 354 IFHQQ---CKRNELVIRVQPNEAVYTKMMTKKPGMF-FNPEESELDLTYGNRYKNVKLPD 409 Query: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480 YERL++D+ +Q F+ DE+ E W+ +L ++ K Y G+ GP ++D L Sbjct: 410 AYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADEL 469 Query: 481 LQKDGRRWHNN 491 +++ G ++ Sbjct: 470 MKRVGFQYEGT 480 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 62.3 bits (151), Expect = 2e-10 Identities = 93/557 (16%), Positives = 156/557 (28%), Gaps = 247/557 (44%) Query: 6 PNIHNSDFI------------IFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRI 53 NS IFGG G+ ++Y EE + Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGN----------TDDYF--EE------------L 173 Query: 54 KMTVESYRSFVD-------KELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLG 106 + ++Y V + L ++ L +K + L++ + W Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRT----TLDAEKVFTQ----GLNILE---W---- 218 Query: 107 KLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKP-IGSNLSSAQEIH- 164 L+ YL S IS P IG + Q H Sbjct: 219 --LENPSNTPDKDYLL--SI---PISC------------------PLIG--V--IQLAHY 249 Query: 165 AITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQ-ITTAETIGV 223 +T K+ LG G + H Q + TA I Sbjct: 250 VVTAKL------------LGFTP--GELRSYLKGA----------TGHSQGLVTAVAIAE 285 Query: 224 EDRVD-YYNNTGALRDMIQNHLLQLL------CLVA---MEMPPSVEAKSIKN-EKIKVL 272 D + ++ + + + +L C A +PPS+ S++N E + Sbjct: 286 TDSWESFFVS--VRK------AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-- 335 Query: 273 QALQMITPENVQKLTVRG----QYQSGI--INGIPVKGYLEEIPLGISDTETFVAIKANI 326 +P L++ Q Q + N +L V I + + Sbjct: 336 ------SP----MLSISNLTQEQVQDYVNKTN-----SHLPA--------GKQVEI-SLV 371 Query: 327 DNPR---WSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNG 383 + + SG P L G L + + K AP + D Q S+I ++ L+ N Sbjct: 372 NGAKNLVVSGPPQSLY-G--LNLTLRKA----K-APSGL-D-Q-SRIPFSERKLKFSN-- 418 Query: 384 EIEQF--ITTKDHS---------------TSNMKLKTTALRICCCSKRIKRTPDGYERLL 426 +F + + HS +N+ ++I P Sbjct: 419 ---RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----------P------- 458 Query: 427 MDIIHANQTLFMGYD--EVEETWKWSDSILKSW--QIINQKVDYYAA----GT----WGP 474 ++ G D + S SI + II V + T +GP Sbjct: 459 ---VYDTFD---GSDLRVL------SGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506 Query: 475 DQSD---VLL--QKDGR 486 + VL KDG Sbjct: 507 GGASGLGVLTHRNKDGT 523 Score = 30.7 bits (69), Expect = 0.86 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 21/83 (25%) Query: 315 DTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNK 374 DT F + I+NP I F GK + ++ S ++ TI D K++T K Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE------TIVD---GKLKTEK 1705 Query: 375 LILRLQNNGEIEQFITTKDHSTS 397 + F +HSTS Sbjct: 1706 I------------FKEINEHSTS 1716 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.7 bits (81), Expect = 0.023 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 31/61 (50%) Query: 267 EKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGISDTETFVAIKANI 326 EK QAL+ KL Q+ + K Y + D+ +AIKA + Sbjct: 18 EK----QALK--------KL------QASL------KLYAD-------DSAPALAIKATM 46 Query: 327 D 327 + Sbjct: 47 E 47 >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoreductase; HET: PQQ; 1.50A {Methylophilus methylotrophus W3A1} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 Score = 29.1 bits (64), Expect = 2.2 Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 274 ALQMITPENVQKLTVRGQYQSGIINGI 300 L I NV+ + + +G++NG Sbjct: 28 PLAQINKSNVKNVKAAWSFSTGVLNGH 54 >1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A* Length = 1332 Score = 28.9 bits (64), Expect = 2.7 Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 6/159 (3%) Query: 103 ELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQE 162 + K+L + RI V M F GK ++ + V P+ L ++ Sbjct: 774 SFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY-KTGHPVRCMLDRNED 832 Query: 163 IHAITRK---IFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAE 219 + + + + F + V + S+ Sbjct: 833 MLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIP 892 Query: 220 TIGVEDRVDYYNNT--GALRDMIQNHLLQLLCLVAMEMP 256 I R+ N + A R L + E+ Sbjct: 893 NIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVA 931 >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Length = 599 Score = 28.8 bits (63), Expect = 3.3 Identities = 8/27 (29%), Positives = 15/27 (55%) Query: 274 ALQMITPENVQKLTVRGQYQSGIINGI 300 L+ I NV++L + +G++NG Sbjct: 28 DLKQINKGNVKQLRPAWTFSTGLLNGH 54 >2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B Length = 1131 Score = 28.3 bits (62), Expect = 4.3 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 2/46 (4%) Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEK 98 ++ ++SY FV +LQ + E + + + + + K Sbjct: 27 VRQHLDSYNDFVRNKLQEIID--EQGEIPTEIPGLKVRLGKIRIGK 70 >3fd4_A Glycoprotein GP42; C type lectin, virus entry, membrane fusion, HOST-virus interaction, lectin, membrane, transmembrane, viral protein; 2.40A {Human herpesvirus 4} PDB: 1kg0_C Length = 191 Score = 27.8 bits (61), Expect = 5.8 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Query: 425 LLMDIIHANQTLFMG-YDEVEETWKWSD-SILKSWQIINQK---VDYYAAGTWGPDQ 476 ++ ++A ++L++G Y E W D K +QI V ++ + Sbjct: 119 VVTRNLNAIESLWVGVYRVGEGNWTSLDGGTFKVYQIFGSHCTYVSKFSTVPVSHHE 175 >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 Score = 27.7 bits (60), Expect = 6.7 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 13/102 (12%) Query: 376 ILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTP----DGYERLLMDIIH 431 I + + TS L T I + + R P D + Sbjct: 271 IACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEK 330 Query: 432 ANQTLFMGY-------DEVEETWKWSDSILKSWQIINQKVDY 466 A + L G+ D + +T +W+ + L + I +K D Sbjct: 331 ARREL--GFSADVSIDDGLRKTIEWTKANLAVIEQIMRKHDS 370 >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 Score = 27.5 bits (60), Expect = 7.6 Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNY 100 + ++S+ FVD LQ + E + L +++ + ++ + Y Sbjct: 44 VSQQLDSFNQFVDYTLQDIIC--EDSTLILEQLAQHTTESD-NISRKY 88 >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 Score = 27.2 bits (59), Expect = 8.6 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNY 100 + + S+ FV +Q + + + L + ++ DV + Y Sbjct: 31 ARQQLFSFDEFVQNTMQEIVD--DDSTLTLDQYAQHTGAQG-DVTRRY 75 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,390,934 Number of extensions: 208491 Number of successful extensions: 609 Number of sequences better than 10.0: 1 Number of HSP's gapped: 592 Number of HSP's successfully gapped: 19 Length of query: 492 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 396 Effective length of database: 3,365,806 Effective search space: 1332859176 Effective search space used: 1332859176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.2 bits)