RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate
1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 553 bits (1427), Expect = e-158
Identities = 155/489 (31%), Positives = 253/489 (51%), Gaps = 24/489 (4%)
Query: 13 FIIFGGTGDLAKRKLFPALYNNYTNREENQISS--RIIGICRIKMTVESYRSFVDKELQR 70
FGGTGDLAKRKL+P+++N Y ++ + I+G R + + ++ V ++
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLY---KKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKD 64
Query: 71 YLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-----IDKTRIRVFYLAMSS 125
+ D + + F+ Y DV + +L + ++ D R+FY++++
Sbjct: 65 FTDDQA----QAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAP 120
Query: 126 AFFGKISQRIHANNLVTE--HTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYL 183
FFG I++ + + L+ + + R+++EKP G++ +A E+ F ++Q+FRIDHYL
Sbjct: 121 RFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYL 180
Query: 184 GKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNH 243
GKE VQ + RF N +++ WN YI +VQ+T +E +GVE+R YY+ GAL DMIQNH
Sbjct: 181 GKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNH 240
Query: 244 LLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVK 303
+Q++ +AME P S K I+ K AL++ V K VR QY +G + K
Sbjct: 241 TMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAG--DSADFK 298
Query: 304 GYLEE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361
YLEE +P S TF+A + D PRW G+PFY+R+GK LA + + I K
Sbjct: 299 PYLEELDVPAD-SKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN 357
Query: 362 IFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDG 421
Q + + L + + G IE + K + +T L + K TP+
Sbjct: 358 FGSEQ--EAQEAVLSIIIDPKGAIELKLNAKSVEDA-FNTRTIDLGWTVSDEDKKNTPEP 414
Query: 422 YERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLL 481
YER++ D ++ + + F ++ V WK+ D+I + ++ Y +G+ GP+ SD LL
Sbjct: 415 YERMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLL 474
Query: 482 QKDGRRWHN 490
+G W
Sbjct: 475 AANGDAWVF 483
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 466 bits (1200), Expect = e-132
Identities = 151/491 (30%), Positives = 251/491 (51%), Gaps = 22/491 (4%)
Query: 9 HNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQIS--SRIIGICRIKMTVESYRSFVDK 66
FII G +GDLAK+K++P ++ + + + + I+G R ++TV R K
Sbjct: 4 DTHIFIIMGASGDLAKKKIYPTIWWLF---RDGLLPENTFIVGYARSRLTVADIR----K 56
Query: 67 ELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD---IDKTRIRVFYLAM 123
+ + + K LK++ F + Y+ + ++ L ++ + R+FYLA+
Sbjct: 57 QSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLAL 116
Query: 124 SSAFFGKISQRIHANNLV-TEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHY 182
+ +++ IH + + R+++EKP G +L S+ + +F+E QI+RIDHY
Sbjct: 117 PPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHY 176
Query: 183 LGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQN 242
LGKE VQ LMV RFAN + +WN I V +T E G E R Y++ G +RD++QN
Sbjct: 177 LGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQN 236
Query: 243 HLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPV 302
HLLQ+LCLVAME P S + +++EK+KVL+ + + NV G G
Sbjct: 237 HLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPD---GEGEAT 293
Query: 303 KGYLEEI-PLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361
KGYL++ S T TF A+ ++N RW G+PF LR GK L + +E+ +
Sbjct: 294 KGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGD 353
Query: 362 IFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRIC-CCSKRIKRTPD 420
IF Q + N+L++R+Q N + + TK + + L + + + PD
Sbjct: 354 IFHQQ---CKRNELVIRVQPNEAVYTKMMTKKPGMF-FNPEESELDLTYGNRYKNVKLPD 409
Query: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480
YERL++D+ +Q F+ DE+ E W+ +L ++ K Y G+ GP ++D L
Sbjct: 410 AYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADEL 469
Query: 481 LQKDGRRWHNN 491
+++ G ++
Sbjct: 470 MKRVGFQYEGT 480
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 62.3 bits (151), Expect = 2e-10
Identities = 93/557 (16%), Positives = 156/557 (28%), Gaps = 247/557 (44%)
Query: 6 PNIHNSDFI------------IFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRI 53
NS IFGG G+ ++Y EE +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGN----------TDDYF--EE------------L 173
Query: 54 KMTVESYRSFVD-------KELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLG 106
+ ++Y V + L ++ L +K + L++ + W
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRT----TLDAEKVFTQ----GLNILE---W---- 218
Query: 107 KLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKP-IGSNLSSAQEIH- 164
L+ YL S IS P IG + Q H
Sbjct: 219 --LENPSNTPDKDYLL--SI---PISC------------------PLIG--V--IQLAHY 249
Query: 165 AITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQ-ITTAETIGV 223
+T K+ LG G + H Q + TA I
Sbjct: 250 VVTAKL------------LGFTP--GELRSYLKGA----------TGHSQGLVTAVAIAE 285
Query: 224 EDRVD-YYNNTGALRDMIQNHLLQLL------CLVA---MEMPPSVEAKSIKN-EKIKVL 272
D + ++ + + + +L C A +PPS+ S++N E +
Sbjct: 286 TDSWESFFVS--VRK------AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-- 335
Query: 273 QALQMITPENVQKLTVRG----QYQSGI--INGIPVKGYLEEIPLGISDTETFVAIKANI 326
+P L++ Q Q + N +L V I + +
Sbjct: 336 ------SP----MLSISNLTQEQVQDYVNKTN-----SHLPA--------GKQVEI-SLV 371
Query: 327 DNPR---WSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNG 383
+ + SG P L G L + + K AP + D Q S+I ++ L+ N
Sbjct: 372 NGAKNLVVSGPPQSLY-G--LNLTLRKA----K-APSGL-D-Q-SRIPFSERKLKFSN-- 418
Query: 384 EIEQF--ITTKDHS---------------TSNMKLKTTALRICCCSKRIKRTPDGYERLL 426
+F + + HS +N+ ++I P
Sbjct: 419 ---RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----------P------- 458
Query: 427 MDIIHANQTLFMGYD--EVEETWKWSDSILKSW--QIINQKVDYYAA----GT----WGP 474
++ G D + S SI + II V + T +GP
Sbjct: 459 ---VYDTFD---GSDLRVL------SGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 475 DQSD---VLL--QKDGR 486
+ VL KDG
Sbjct: 507 GGASGLGVLTHRNKDGT 523
Score = 30.7 bits (69), Expect = 0.86
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 21/83 (25%)
Query: 315 DTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNK 374
DT F + I+NP I F GK + ++ S ++ TI D K++T K
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE------TIVD---GKLKTEK 1705
Query: 375 LILRLQNNGEIEQFITTKDHSTS 397
+ F +HSTS
Sbjct: 1706 I------------FKEINEHSTS 1716
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.023
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 31/61 (50%)
Query: 267 EKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGISDTETFVAIKANI 326
EK QAL+ KL Q+ + K Y + D+ +AIKA +
Sbjct: 18 EK----QALK--------KL------QASL------KLYAD-------DSAPALAIKATM 46
Query: 327 D 327
+
Sbjct: 47 E 47
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native,
oxidoreductase; HET: PQQ; 1.50A {Methylophilus
methylotrophus W3A1} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A*
4aah_A* 1g72_A*
Length = 571
Score = 29.1 bits (64), Expect = 2.2
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 274 ALQMITPENVQKLTVRGQYQSGIINGI 300
L I NV+ + + +G++NG
Sbjct: 28 PLAQINKSNVKNVKAAWSFSTGVLNGH 54
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction
intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A
{Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1
d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C*
3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A*
3eub_A* 3etr_A*
Length = 1332
Score = 28.9 bits (64), Expect = 2.7
Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 6/159 (3%)
Query: 103 ELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQE 162
+ K+L + RI V M F GK ++ + V P+ L ++
Sbjct: 774 SFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY-KTGHPVRCMLDRNED 832
Query: 163 IHAITRK---IFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAE 219
+ + + + F + V + S+
Sbjct: 833 MLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIP 892
Query: 220 TIGVEDRVDYYNNT--GALRDMIQNHLLQLLCLVAMEMP 256
I R+ N + A R L + E+
Sbjct: 893 NIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVA 931
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
oxidoreductase, calcium- binding, methanol utilization,
PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Length = 599
Score = 28.8 bits (63), Expect = 3.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 274 ALQMITPENVQKLTVRGQYQSGIINGI 300
L+ I NV++L + +G++NG
Sbjct: 28 DLKQINKGNVKQLRPAWTFSTGLLNGH 54
>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit,
transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B
2pmz_B 3hkz_B
Length = 1131
Score = 28.3 bits (62), Expect = 4.3
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEK 98
++ ++SY FV +LQ + E + + + + + K
Sbjct: 27 VRQHLDSYNDFVRNKLQEIID--EQGEIPTEIPGLKVRLGKIRIGK 70
>3fd4_A Glycoprotein GP42; C type lectin, virus entry, membrane fusion,
HOST-virus interaction, lectin, membrane, transmembrane,
viral protein; 2.40A {Human herpesvirus 4} PDB: 1kg0_C
Length = 191
Score = 27.8 bits (61), Expect = 5.8
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 425 LLMDIIHANQTLFMG-YDEVEETWKWSD-SILKSWQIINQK---VDYYAAGTWGPDQ 476
++ ++A ++L++G Y E W D K +QI V ++ +
Sbjct: 119 VVTRNLNAIESLWVGVYRVGEGNWTSLDGGTFKVYQIFGSHCTYVSKFSTVPVSHHE 175
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 27.7 bits (60), Expect = 6.7
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 376 ILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTP----DGYERLLMDIIH 431
I + + TS L T I + + R P D +
Sbjct: 271 IACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEK 330
Query: 432 ANQTLFMGY-------DEVEETWKWSDSILKSWQIINQKVDY 466
A + L G+ D + +T +W+ + L + I +K D
Sbjct: 331 ARREL--GFSADVSIDDGLRKTIEWTKANLAVIEQIMRKHDS 370
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 27.5 bits (60), Expect = 7.6
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNY 100
+ ++S+ FVD LQ + E + L +++ + ++ + Y
Sbjct: 44 VSQQLDSFNQFVDYTLQDIIC--EDSTLILEQLAQHTTESD-NISRKY 88
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 27.2 bits (59), Expect = 8.6
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNY 100
+ + S+ FV +Q + + + L + ++ DV + Y
Sbjct: 31 ARQQLFSFDEFVQNTMQEIVD--DDSTLTLDQYAQHTGAQG-DVTRRY 75
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,390,934
Number of extensions: 208491
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 19
Length of query: 492
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 396
Effective length of database: 3,365,806
Effective search space: 1332859176
Effective search space used: 1332859176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)