RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate
1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 297
Score = 319 bits (818), Expect = 4e-88
Identities = 100/313 (31%), Positives = 156/313 (49%), Gaps = 22/313 (7%)
Query: 180 DHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDM 239
DHYLGKE VQ LMV RFAN + +WN I V +T E G E R Y++ G +RD+
Sbjct: 1 DHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDV 60
Query: 240 IQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIING 299
+QNHLLQ+LCLVAME P S + +++EK+KVL+ + + NV G G
Sbjct: 61 MQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGN---PDGEG 117
Query: 300 IPVKGYLEEIPLGI-SDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPA 358
KGYL++ + S T TF A+ ++N RW G+PF LR GK L + +E+ +
Sbjct: 118 EATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDV 177
Query: 359 PCTIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRT 418
IF Q + N+L++R+Q N + + TK + + L +
Sbjct: 178 AGDIFHQQ---CKRNELVIRVQPNEAVYTKMMTKKPGMF-FNPEESELDLTY-------- 225
Query: 419 PDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSD 478
+ Y+ + + F+ DE+ E W+ +L ++ K Y G+ GP ++D
Sbjct: 226 GNRYKNVKLP------MHFVRSDELLEAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEAD 279
Query: 479 VLLQKDGRRWHNN 491
L+++ G ++
Sbjct: 280 ELMKRVGFQYEGT 292
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate
dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Length = 290
Score = 307 bits (788), Expect = 1e-84
Identities = 95/307 (30%), Positives = 143/307 (46%), Gaps = 20/307 (6%)
Query: 185 KEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHL 244
KE VQ + RF N +++ WN YI +VQ+T +E +GVE+R YY+ GAL DMIQNH
Sbjct: 1 KEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHT 60
Query: 245 LQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKG 304
+Q++ +AME P S K I+ K AL++ V K VR QY +G + K
Sbjct: 61 MQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAG--DSADFKP 118
Query: 305 YLEEIPLGISD-TETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIF 363
YLEE+ + TF+A + D PRW G+PFY+R+GK LA + + I K
Sbjct: 119 YLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFG 178
Query: 364 DHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDGYE 423
Q + L + + G IE + K + + G+
Sbjct: 179 SEQEA--CEAVLSIIIDPKGAIELKLNAKSV---------------EDAFNTRTIDLGWT 221
Query: 424 RLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQK 483
D + + F ++ V WK+ D+I + ++ Y +G+ GP+ SD LL
Sbjct: 222 VSDEDKKNTPGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAA 281
Query: 484 DGRRWHN 490
+G W
Sbjct: 282 NGDAWVF 288
>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate
dehydrogenase, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 203
Score = 157 bits (399), Expect = 1e-39
Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 15/195 (7%)
Query: 3 NHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQIS--SRIIGICRIKMTVESY 60
+ FII G +GDLAK+K++P ++ + + + + I+G R ++TV
Sbjct: 13 DAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLF---RDGLLPENTFIVGYARSRLTVADI 69
Query: 61 RSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD---IDKTRIR 117
R + + K LK++ F + Y+ + ++ L ++ + R
Sbjct: 70 RKQSEP----FFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANR 125
Query: 118 VFYLAMSSAFFGKISQRIHANNLV-TEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQI 176
+FYLA+ + +++ IH + + R+++EKP G +L S+ + +F+E QI
Sbjct: 126 LFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQI 185
Query: 177 FRIDHYLGKEAVQGL 191
+RID Y + + +
Sbjct: 186 YRIDAY--ERLILDV 198
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate
dehydrogenase, N-terminal domain {Leuconostoc
mesenteroides [TaxId: 1245]}
Length = 195
Score = 157 bits (398), Expect = 2e-39
Identities = 53/193 (27%), Positives = 98/193 (50%), Gaps = 12/193 (6%)
Query: 13 FIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYL 72
FGGTGDLAKRKL+P+++N Y + Q I+G R + + ++ V +
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLY-KKGYLQKHFAIVGTARQALNDDEFKQLVRD----SI 62
Query: 73 KDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-----IDKTRIRVFYLAMSSAF 127
KD + + + F+ Y DV + +L + ++ D R+FY++++ F
Sbjct: 63 KDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRF 122
Query: 128 FGKISQRIHANNLVTEH--TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGK 185
FG I++ + + L+ + R+++EKP G++ +A E+ F ++Q+FRIDHYLG+
Sbjct: 123 FGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGE 182
Query: 186 EAVQGLMVFRFAN 198
+ + +
Sbjct: 183 PYERMIHDTMNGD 195
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
{Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 571
Score = 28.8 bits (63), Expect = 0.98
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 274 ALQMITPENVQKLTVRGQYQSGIINGI 300
L I NV+ + + +G++NG
Sbjct: 28 PLAQINKSNVKNVKAAWSFSTGVLNGH 54
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 28.7 bits (63), Expect = 1.0
Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 6/141 (4%)
Query: 103 ELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQE 162
+ L + +RV M F GK SQ H R +P +
Sbjct: 81 HKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAAR-ATGRPCKMRYDRDDD 139
Query: 163 IHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIG 222
+ ++ FRI + +G +A L+ F + + + G
Sbjct: 140 MVITGKR-----HDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADG 194
Query: 223 VEDRVDYYNNTGALRDMIQNH 243
+ LR Q++
Sbjct: 195 SYFVPALRIESHRLRTNTQSN 215
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 28.0 bits (61), Expect = 1.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 273 QALQMITPENVQKLTVRGQYQSGIINGI 300
L+ I NV++L + +G++NG
Sbjct: 27 SDLKQINKGNVKQLRPAWTFSTGLLNGH 54
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 27.2 bits (59), Expect = 2.8
Identities = 26/217 (11%), Positives = 55/217 (25%), Gaps = 16/217 (7%)
Query: 273 QALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEIPLGISDTETFVAIKANIDNPRWS 332
L+ I NV+ L + G+ E PL + +
Sbjct: 31 SPLKQIDASNVRSLGLAWYMDLDNTRGL------EATPLFHDGV-IYTS------MSWSR 77
Query: 333 GIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIEQFITTK 392
I +GK L ++ E+ C ++ + +K+ + + I T
Sbjct: 78 VIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG 137
Query: 393 DHSTSNMKLKTTALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYD-EVEETWKWSD 451
S + R+ + + + YD + +
Sbjct: 138 KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGN--GGAEYGVRGFVSAYDADTGKLAWRFY 195
Query: 452 SILKSWQIINQKVDYYAAGTWGPDQSDVLLQKDGRRW 488
++ + + + A L G W
Sbjct: 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVW 232
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 573
Score = 26.8 bits (58), Expect = 3.7
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 273 QALQMITPENVQKLTVRGQYQSGIINGI 300
L I NV+ L + Y G+
Sbjct: 42 SRLDQINAANVKDLGLAWSYNLESTRGV 69
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1207
Score = 26.8 bits (58), Expect = 3.8
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNY 100
+ ++S+ FVD LQ + E + L +++ + ++ + Y
Sbjct: 27 VSQQLDSFNQFVDYTLQDIIC--EDSTLILEQLAQHTTESD-NISRKY 71
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 26.5 bits (57), Expect = 5.9
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 103 ELLGKLLDIDKTRIRVFYLAMSSAFFGKISQ 133
+ K+L + RI V M F GK ++
Sbjct: 80 SFVAKMLGVPVNRILVRVKRMGGGFGGKETR 110
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 582
Score = 26.1 bits (56), Expect = 6.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 273 QALQMITPENVQKLTVRGQYQSG 295
L+ + +NV KLT Y G
Sbjct: 31 SPLKQVNADNVFKLTPAWSYSFG 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,912,633
Number of extensions: 92604
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 17
Length of query: 492
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,185,626
Effective search space: 477807278
Effective search space used: 477807278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)