BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (492 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/492 (100%), Positives = 492/492 (100%) Query: 1 MQNHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESY 60 MQNHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESY Sbjct: 1 MQNHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESY 60 Query: 61 RSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFY 120 RSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFY Sbjct: 61 RSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFY 120 Query: 121 LAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRID 180 LAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRID Sbjct: 121 LAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRID 180 Query: 181 HYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMI 240 HYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMI Sbjct: 181 HYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMI 240 Query: 241 QNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGI 300 QNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGI Sbjct: 241 QNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGI 300 Query: 301 PVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPC 360 PVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPC Sbjct: 301 PVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPC 360 Query: 361 TIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPD 420 TIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPD Sbjct: 361 TIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPD 420 Query: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL Sbjct: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480 Query: 481 LQKDGRRWHNNT 492 LQKDGRRWHNNT Sbjct: 481 LQKDGRRWHNNT 492 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 27.7 bits (60), Expect = 0.46, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 139 NLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGK 185 NL++ H R L IG ++ H + ++K SQ F I++ +GK Sbjct: 90 NLISNHIRDFLYVEIGQG-ATCTLYHQVVSHVYKLSQRFHINYKVGK 135 >gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%) Query: 99 NYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKI 131 NYGW LG + D V LA+ +A+ GK+ Sbjct: 15 NYGWGALGIVSD-------VALLAIPAAYLGKV 40 >gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 13/102 (12%) Query: 109 LDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNL----------- 157 + D ++RVFY+ S F ++++H + LE +G L Sbjct: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 Query: 158 SSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANT 199 ++H +T +++ + + +I+ L + +V+ R A T Sbjct: 61 EQGSKLHRVTSEVYHKLETTQIE--LQESSVKPSGKLRIATT 100 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 23.5 bits (49), Expect = 9.2, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 13 FIIFGGTGDLAKRKLFPAL-YNNYTNRE 39 F ++G +AK K+F AL YNN T+++ Sbjct: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQD 344 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 321,927 Number of Sequences: 1233 Number of extensions: 13611 Number of successful extensions: 35 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 10 length of query: 492 length of database: 328,796 effective HSP length: 78 effective length of query: 414 effective length of database: 232,622 effective search space: 96305508 effective search space used: 96305508 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)