HHsearch alignment for GI: 254780505 and conserved domain: COG2390
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].
Probab=98.21 E-value=0.00012 Score=48.39 Aligned_cols=206 Identities=14% Similarity=0.102 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999999999999972897799987986469999878763079532389981321003567320278899976
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF 90 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l 90 (234)
T Consensus 92 ~~~~~~~~lg~aaA~~l~~~l~~g-d-vigV~wGrTv~a~~~~l~~~~--~~~~~vV~l~G-G~~~~~~~~~~~~~~~~~ 166 (321)
T COG2390 92 ADDSILRRLGRAAAQYLESLLKPG-D-VIGVGWGRTLSAVVDNLPPAP--LRDVKVVQLTG-GVGHADGSYNANTIALRL 166 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC-C-EEEEECCHHHHHHHHHCCCCC--CCCEEEEECCC-CCCCCCCCCCHHHHHHHH
T ss_conf 855899999999999999857799-9-999925579999998559676--68838998889-888776666787999999
Q ss_pred HCCCCCCCCEEECCCCCCCHHHHHHHH-----HHHHHHHCCCCCCEEEECCCCCCCEEE----ECCCCCCCE----EECC
Q ss_conf 235677632144458878989999999-----999963158776489944788771434----027864100----2215
Q gi|254780505|r 91 LQNKAQKASFIPLYYPQKTIEEAIRIA-----NEKICQLIHFPFDVVVLGMGIDGHTAS----FFPKGDTLS----IALD 157 (234)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~lLGiG~DGH~AS----lFP~~~~l~----~~~~ 157 (234)
T Consensus 167 A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~--~~ad~alvGIG~~~~~~~~~~~g~~~~~~~~~l~~~gaV 244 (321)
T COG2390 167 AEKLGAESYLLPAPLVASSPELREALLQEPSVREVLDLA--RSADLALVGIGSLSANSTLVRSGFIYEEELEALLAKGAV 244 (321)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHH--HHCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 998499178663670078999999998482899999999--757999995477764460344269788999999967930
Q ss_pred CCCCCCEEEECCCCC--C-C-EEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC-----CCCCCHHHHHHC
Q ss_conf 667431899538998--7-2-1587087888415829999818348999999980898-----320608999618
Q gi|254780505|r 158 THTPRSVIAIKDYTS--N-E-QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD-----ALEMPIRAILWN 223 (234)
Q Consensus 158 ~~~~~~~~~~~~~~~--p-~-~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~-----~~~~Pas~ll~~ 223 (234)
T Consensus 245 Gdi~g~ffD~~G~~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~~n~LITDe~tA~~lL~~ 319 (321)
T COG2390 245 GDILGRFFDANGQPVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGYINVLITDEATAEALLEA 319 (321)
T ss_pred EECCCCEECCCCCCCCCCCCCCEECCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC
T ss_conf 003066232799885555657164377889732783899957860289999998479987888578999999842