HHsearch alignment for GI: 254780505 and conserved domain: COG2390

>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].
Probab=98.21  E-value=0.00012  Score=48.39  Aligned_cols=206  Identities=14%  Similarity=0.102  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98999999999999999999972897799987986469999878763079532389981321003567320278899976
Q gi|254780505|r   11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF   90 (234)
Q Consensus        11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l   90 (234)
T Consensus        92 ~~~~~~~~lg~aaA~~l~~~l~~g-d-vigV~wGrTv~a~~~~l~~~~--~~~~~vV~l~G-G~~~~~~~~~~~~~~~~~  166 (321)
T COG2390          92 ADDSILRRLGRAAAQYLESLLKPG-D-VIGVGWGRTLSAVVDNLPPAP--LRDVKVVQLTG-GVGHADGSYNANTIALRL  166 (321)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCC-C-EEEEECCHHHHHHHHHCCCCC--CCCEEEEECCC-CCCCCCCCCCHHHHHHHH
T ss_conf             855899999999999999857799-9-999925579999998559676--68838998889-888776666787999999


Q ss_pred             HCCCCCCCCEEECCCCCCCHHHHHHHH-----HHHHHHHCCCCCCEEEECCCCCCCEEE----ECCCCCCCE----EECC
Q ss_conf             235677632144458878989999999-----999963158776489944788771434----027864100----2215
Q gi|254780505|r   91 LQNKAQKASFIPLYYPQKTIEEAIRIA-----NEKICQLIHFPFDVVVLGMGIDGHTAS----FFPKGDTLS----IALD  157 (234)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~lLGiG~DGH~AS----lFP~~~~l~----~~~~  157 (234)
T Consensus       167 A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~--~~ad~alvGIG~~~~~~~~~~~g~~~~~~~~~l~~~gaV  244 (321)
T COG2390         167 AEKLGAESYLLPAPLVASSPELREALLQEPSVREVLDLA--RSADLALVGIGSLSANSTLVRSGFIYEEELEALLAKGAV  244 (321)
T ss_pred             HHHHCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHH--HHCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHCCCC
T ss_conf             998499178663670078999999998482899999999--757999995477764460344269788999999967930


Q ss_pred             CCCCCCEEEECCCCC--C-C-EEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC-----CCCCCHHHHHHC
Q ss_conf             667431899538998--7-2-1587087888415829999818348999999980898-----320608999618
Q gi|254780505|r  158 THTPRSVIAIKDYTS--N-E-QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD-----ALEMPIRAILWN  223 (234)
Q Consensus       158 ~~~~~~~~~~~~~~~--p-~-~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~-----~~~~Pas~ll~~  223 (234)
T Consensus       245 Gdi~g~ffD~~G~~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~~n~LITDe~tA~~lL~~  319 (321)
T COG2390         245 GDILGRFFDANGQPVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGYINVLITDEATAEALLEA  319 (321)
T ss_pred             EECCCCEECCCCCCCCCCCCCCEECCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC
T ss_conf             003066232799885555657164377889732783899957860289999998479987888578999999842