HHsearch alignment of GI: 254780505 and MMDB domain: 3efb_A_
>3efb_A (A:) Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str}
Probab=99.96 E-value=1.9e-28 Score=193.89 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=152.6
Q ss_pred EEEEE----CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 89994----89899999999999999999997289779998798646999987876307953238998132100356732
Q gi|254780505|r 5 KLYVA----ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 5 ~i~i~----~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
+++|+ ++.+++.+.+++..++.+.+.+ ++.+.|+++||+||..+|+.|.+.. .|.++.|+.+++++++..+++
T Consensus 28 ~~~V~~~~~~~~~~~~~~~~~~~a~~l~~~l--~~~~~igis~G~t~~~~~~~l~~~~-~~~~~~~~~~~g~~~~~~~~~ 104 (266)
T 3efb_A 28 DVVVVSGNDEDEETQLAXXGLHGAQLLDRLL--EPGDIVGFSWGRAVSALVENLPQAG-QSRQLICVPIIGGPSGKLESR 104 (266)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHHHHHHHHHC--CTTCEEEECCSHHHHHHHHTCCCCS-SCCCCEEEESBCBCTTSSCGG
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHCCCCC-CCCCCEEEECCCCCCCCCCCC
T ss_conf 7999679988716899999999999999867--8999999907788999999713225-788958998878887656675
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHH-----HHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE
Q ss_conf 027889997623567763214445887898999-----999999996315877648994478877143402786410022
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEA-----IRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA 155 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~ 155 (234)
+|+..+.+.|+++...+..+++.+....+.+.. +..+.+.++.. +++|++++|||+|||+||+||++......
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~e~~~~~~~~~~~~~~l~~~--~~~DiailGiG~~gh~~~~~p~~~~~~~~ 182 (266)
T 3efb_A 105 YHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIXQSQHFKTISAYW--DNLDIALVGIGSPAIRDGANWHAFYGGEE 182 (266)
T ss_dssp GCHHHHHHHHHHHTTCEECCCCSBSBCSSHHHHHHHHTSHHHHHHHHHH--HTCSEEEECCBCCC---------CSCHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHH--HCCCEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 5889999999998089611566642479999999998585999999987--44999999478787656422157889899
Q ss_pred CCCCCCC--------CEEEEC----CCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC
Q ss_conf 1566743--------189953----899872158708788841582999981834899999998089832
Q gi|254780505|r 156 LDTHTPR--------SVIAIK----DYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL 213 (234)
Q Consensus 156 ~~~~~~~--------~~~~~~----~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~ 213 (234)
....... .+...+ +.+.|.++||+|++.|++++++++++.|++|+++++.++.+....
T Consensus 183 ~~~~~~~~~vg~~~~~~~d~~g~~~~~~~~~r~iti~l~~l~~a~~vi~va~G~~K~~ai~~aL~~~~~~ 252 (266)
T 3efb_A 183 SDDLNARQVAGDICSRFFDIHGAXVETNXSEKTLSIEXNKLKQARYSIGIAXSEEKYSGIIGALRGKYIN 252 (266)
T ss_dssp HHHHHHTTCCEEETTEEECTTSCBCCCTTGGGBCBCCHHHHHTSSEEEEECCCSCSSCHHHHHHHTTSCS
T ss_pred HHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 9999974659999987734699996665545345368789646886899966816699999998269995