HHsearch alignment of GI: 254780505 and MMDB domain: 3kv1_A_

>3kv1_A (A:) Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114}
Probab=99.95  E-value=2.1e-28  Score=193.65  Aligned_cols=214  Identities=9%  Similarity=0.015  Sum_probs=162.9

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             94898999999999999999999972897799987986469999878763079532389981321003567320278899
Q gi|254780505|r    8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFIS   87 (234)
Q Consensus         8 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~   87 (234)
                      .+++.+++.+.+++.+++.+.+.++  +..+|+|+||+||..+|+.|...   |.+..+|+.|+|+++.++++||+..+.
T Consensus        30 ~~~~~~~~~~~la~~aa~~l~~~l~--~~~~igvs~G~T~~~~~~~l~~~---~~~~~~~v~~~g~~~~~~~~~~~~~i~  104 (267)
T 3kv1_A           30 DQPNTNEQRKQVAALVSSYLNNNLQ--EGXAVAVGQGQNVAAVADHAGIV---TQRNARFVSAIGGTHRSGDIINADHIC  104 (267)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHCC--TTCEEEECCSHHHHHHHHCCCCC---CCCCCEEEESBCBCC----CCCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHCCCC---CCCCCEEEECCCCCCCCCCCCCHHHHH
T ss_conf             9999369999999999999997576--89889994788999999835766---778956994688767776756899999


Q ss_pred             HHHHCCCCCCCCEEECCCCCCCHHHHHHHH-HHHHHHHC--CCCCCEEEECCCCCCCEEEECCCCCCCEEE---------
Q ss_conf             976235677632144458878989999999-99996315--877648994478877143402786410022---------
Q gi|254780505|r   88 KFFLQNKAQKASFIPLYYPQKTIEEAIRIA-NEKICQLI--HFPFDVVVLGMGIDGHTASFFPKGDTLSIA---------  155 (234)
Q Consensus        88 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~---------  155 (234)
                      +.|+++...+..+++.+....+.+.....+ +..++...  ...+|++++|||.|||+||+||+.......         
T Consensus       105 ~~la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diai~GiG~~~~~as~~~~~~~~~~~~~~~l~~~~  184 (267)
T 3kv1_A          105 RRLAKKYGGSSETLYAPAYVNDPSLRSAFXEHATIKETLSQARKAEFALVGIGDXDENSHXVKLGFFTPKEFVEARLNDG  184 (267)
T ss_dssp             HHHHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHHHTCSEEEEEEEEHHHHTHHHHTTSSCHHHHHHHHHTTC
T ss_pred             HHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHCC
T ss_conf             99999829989998278227999999999758689999999986999999526888774045416898699999999789


Q ss_pred             -CCCCCCCCEEEECCCC----CCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCC-----CCCCHHHHHHCCC
Q ss_conf             -1566743189953899----87215870878884158299998183489999999808983-----2060899961899
Q gi|254780505|r  156 -LDTHTPRSVIAIKDYT----SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDA-----LEMPIRAILWNAQ  225 (234)
Q Consensus       156 -~~~~~~~~~~~~~~~~----~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~-----~~~Pas~ll~~~~  225 (234)
                       ........+...+...    .+.+|||+|++.|++++++++++.|++|++++..++++...     .+-+|+.|+++.+
T Consensus       185 av~~~~~~~~~d~~g~~~~~~~~~r~i~i~l~~l~~~~~vi~va~G~~Ka~ai~~aL~~~~~~~litD~~~A~~Ll~~~~  264 (267)
T 3kv1_A          185 IVGDIGGFDFFKLDGTDADTLXRGRVIGLEXEDLRQIPNVVAXASESRKALSIXGALRTGVIDVLATSVSCAXALLNLAE  264 (267)
T ss_dssp             EEEEETTTEEEETTSCBCCCGGGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTSCCSEEEEEHHHHHHHHHHHH
T ss_pred             CEEEEECCEEECCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCHH
T ss_conf             57999334036589989556342542116879974799689996781669999999835999989979999999970020


Q ss_pred             C
Q ss_conf             9
Q gi|254780505|r  226 S  226 (234)
Q Consensus       226 ~  226 (234)
                      .
T Consensus       265 ~  265 (267)
T 3kv1_A          265 N  265 (267)
T ss_dssp             C
T ss_pred             C
T ss_conf             4