HHsearch alignment of GI: 254780505 and MMDB domain: 3kv1_A_
>3kv1_A (A:) Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114}
Probab=99.95 E-value=2.1e-28 Score=193.65 Aligned_cols=214 Identities=9% Similarity=0.015 Sum_probs=162.9
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 94898999999999999999999972897799987986469999878763079532389981321003567320278899
Q gi|254780505|r 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFIS 87 (234)
Q Consensus 8 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~ 87 (234)
.+++.+++.+.+++.+++.+.+.++ +..+|+|+||+||..+|+.|... |.+..+|+.|+|+++.++++||+..+.
T Consensus 30 ~~~~~~~~~~~la~~aa~~l~~~l~--~~~~igvs~G~T~~~~~~~l~~~---~~~~~~~v~~~g~~~~~~~~~~~~~i~ 104 (267)
T 3kv1_A 30 DQPNTNEQRKQVAALVSSYLNNNLQ--EGXAVAVGQGQNVAAVADHAGIV---TQRNARFVSAIGGTHRSGDIINADHIC 104 (267)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCC--TTCEEEECCSHHHHHHHHCCCCC---CCCCCEEEESBCBCC----CCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHCCCC---CCCCCEEEECCCCCCCCCCCCCHHHHH
T ss_conf 9999369999999999999997576--89889994788999999835766---778956994688767776756899999
Q ss_pred HHHHCCCCCCCCEEECCCCCCCHHHHHHHH-HHHHHHHC--CCCCCEEEECCCCCCCEEEECCCCCCCEEE---------
Q ss_conf 976235677632144458878989999999-99996315--877648994478877143402786410022---------
Q gi|254780505|r 88 KFFLQNKAQKASFIPLYYPQKTIEEAIRIA-NEKICQLI--HFPFDVVVLGMGIDGHTASFFPKGDTLSIA--------- 155 (234)
Q Consensus 88 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~--------- 155 (234)
+.|+++...+..+++.+....+.+.....+ +..++... ...+|++++|||.|||+||+||+.......
T Consensus 105 ~~la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diai~GiG~~~~~as~~~~~~~~~~~~~~~l~~~~ 184 (267)
T 3kv1_A 105 RRLAKKYGGSSETLYAPAYVNDPSLRSAFXEHATIKETLSQARKAEFALVGIGDXDENSHXVKLGFFTPKEFVEARLNDG 184 (267)
T ss_dssp HHHHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHHHTCSEEEEEEEEHHHHTHHHHTTSSCHHHHHHHHHTTC
T ss_pred HHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHCC
T ss_conf 99999829989998278227999999999758689999999986999999526888774045416898699999999789
Q ss_pred -CCCCCCCCEEEECCCC----CCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCC-----CCCCHHHHHHCCC
Q ss_conf -1566743189953899----87215870878884158299998183489999999808983-----2060899961899
Q gi|254780505|r 156 -LDTHTPRSVIAIKDYT----SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDA-----LEMPIRAILWNAQ 225 (234)
Q Consensus 156 -~~~~~~~~~~~~~~~~----~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~-----~~~Pas~ll~~~~ 225 (234)
........+...+... .+.+|||+|++.|++++++++++.|++|++++..++++... .+-+|+.|+++.+
T Consensus 185 av~~~~~~~~~d~~g~~~~~~~~~r~i~i~l~~l~~~~~vi~va~G~~Ka~ai~~aL~~~~~~~litD~~~A~~Ll~~~~ 264 (267)
T 3kv1_A 185 IVGDIGGFDFFKLDGTDADTLXRGRVIGLEXEDLRQIPNVVAXASESRKALSIXGALRTGVIDVLATSVSCAXALLNLAE 264 (267)
T ss_dssp EEEEETTTEEEETTSCBCCCGGGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTSCCSEEEEEHHHHHHHHHHHH
T ss_pred CEEEEECCEEECCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCHH
T ss_conf 57999334036589989556342542116879974799689996781669999999835999989979999999970020
Q ss_pred C
Q ss_conf 9
Q gi|254780505|r 226 S 226 (234)
Q Consensus 226 ~ 226 (234)
.
T Consensus 265 ~ 265 (267)
T 3kv1_A 265 N 265 (267)
T ss_dssp C
T ss_pred C
T ss_conf 4