Query gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 234
No_of_seqs 118 out of 1678
Neff 7.6
Searched_HMMs 33803
Date Wed Jun 1 16:56:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780505.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3lhi_A Putative 6-phosphogluc 100.0 0 0 378.5 23.7 228 3-233 2-231 (232)
2 >3css_A 6-phosphogluconolacton 100.0 0 0 376.4 19.1 230 2-233 4-258 (267)
3 >3eb9_A 6-phosphogluconolacton 100.0 0 0 369.0 24.1 230 2-232 3-255 (266)
4 >1vl1_A 6PGL, 6-phosphoglucono 100.0 0 0 370.7 19.2 221 1-231 11-231 (232)
5 >3e15_A Glucose-6-phosphate 1- 100.0 0 0 364.7 21.7 233 1-233 24-294 (312)
6 >3hn6_A Glucosamine-6-phosphat 100.0 0 0 359.3 20.0 231 2-234 20-264 (289)
7 >1ne7_A Glucosamine-6-phosphat 100.0 0 0 357.1 21.4 229 4-234 1-243 (289)
8 >1y89_A DEVB protein; structur 100.0 0 0 350.4 23.4 217 3-229 1-227 (238)
9 >3ico_A 6PGL, 6-phosphoglucono 100.0 0 0 348.6 23.2 227 1-231 21-259 (268)
10 >1fs5_A Glucosamine-6-phosphat 100.0 0 0 349.3 18.1 228 4-233 1-242 (266)
11 >2bkx_A Glucosamine-6-phosphat 100.0 0 0 337.6 20.8 222 4-231 1-234 (242)
12 >2ri0_A Glucosamine-6-phosphat 100.0 1.1E-36 3.3E-41 244.4 20.2 220 3-231 1-227 (234)
13 >2w48_A Sorbitol operon regula 100.0 1.5E-29 4.3E-34 200.8 12.2 206 5-213 23-247 (261)
14 >2gnp_A Transcriptional regula 100.0 2.7E-30 8E-35 205.2 6.5 209 9-224 33-263 (266)
15 >2r5f_A Transcriptional regula 100.0 5.6E-29 1.6E-33 197.2 10.0 199 8-212 32-249 (264)
16 >3efb_A Probable SOR-operon re 100.0 1.9E-28 5.7E-33 193.9 11.9 204 5-213 28-252 (266)
17 >3kv1_A Transcriptional repres 100.0 2.1E-28 6.2E-33 193.6 8.3 214 8-226 30-265 (267)
18 >2o0m_A Transcriptional regula 100.0 5.4E-29 1.6E-33 197.3 4.6 210 10-223 118-342 (345)
19 >2okg_A Central glycolytic gen 99.9 1.6E-27 4.6E-32 188.3 7.1 213 5-222 24-253 (255)
20 >1ct9_A Asparagine synthetase 92.3 0.29 8.7E-06 27.2 5.1 47 10-56 3-49 (354)
21 >2fue_A PMM 1, PMMH-22, phosph 71.5 6.9 0.0002 18.8 6.2 22 34-55 43-64 (157)
22 >2ivn_A O-sialoglycoprotein en 71.0 6.6 0.00019 19.0 4.2 29 19-47 110-138 (164)
23 >1jgt_A Beta-lactam synthetase 70.4 7.3 0.00021 18.7 8.6 126 9-144 3-143 (300)
24 >3en9_A Glycoprotease, O-sialo 69.5 7.4 0.00022 18.6 4.2 17 39-55 26-42 (161)
25 >1t35_A Hypothetical protein Y 68.1 8.1 0.00024 18.4 4.9 20 99-118 100-119 (191)
26 >1ydh_A AT5G11950; structural 64.8 9.5 0.00028 18.0 5.6 21 99-119 108-128 (216)
27 >3bzc_A TEX; helix-turn-helix, 64.5 9.6 0.00028 18.0 5.4 47 27-73 50-98 (142)
28 >3kbq_A Protein TA0487; struct 59.2 12 0.00035 17.4 4.2 72 63-143 5-81 (172)
29 >2db3_A ATP-dependent RNA heli 58.4 12 0.00036 17.3 8.2 63 4-71 131-211 (271)
30 >2oq2_A Phosphoadenosine phosp 54.8 14 0.00042 16.9 9.1 52 23-74 30-81 (261)
31 >3eno_A Putative O-sialoglycop 52.8 15 0.00045 16.7 4.3 26 20-45 108-133 (161)
32 >2rgy_A Transcriptional regula 50.3 17 0.00049 16.5 9.7 116 13-148 3-126 (133)
33 >2fxu_A Alpha-actin-1, actin, 48.6 18 0.00052 16.3 4.5 35 38-72 79-118 (135)
34 >1zun_A Sulfate adenylyltransf 48.2 18 0.00053 16.3 7.7 55 19-73 31-86 (325)
35 >2hsi_A Putative peptidase M23 46.0 19 0.00057 16.1 3.2 35 146-180 81-115 (130)
36 >2i7n_A Pantothenate kinase 1; 45.6 20 0.00058 16.0 3.5 11 36-46 29-39 (199)
37 >3i8b_A Xylulose kinase; strai 45.0 20 0.0006 16.0 6.1 31 177-207 123-159 (172)
38 >2a33_A Hypothetical protein; 44.9 20 0.0006 16.0 5.6 22 99-120 112-133 (215)
39 >1hux_A Activator of (R)-2-hyd 42.6 22 0.00065 15.8 4.7 37 11-47 88-125 (143)
40 >1e4f_T Cell division protein 41.9 13 0.00039 17.1 1.7 61 11-71 104-175 (230)
41 >3gyg_A NTD biosynthesis opero 41.6 23 0.00067 15.7 7.6 46 21-67 47-93 (201)
42 >3ilv_A Glutamine-dependent NA 40.7 24 0.0007 15.6 4.1 38 10-49 8-47 (246)
43 >1q0u_A Bstdead; DEAD protein, 39.1 25 0.00074 15.4 5.0 95 5-104 75-187 (219)
44 >1x3l_A Hypothetical protein P 38.9 20 0.00059 16.0 2.2 36 10-46 77-112 (244)
45 >3iuy_A Probable ATP-dependent 38.7 25 0.00075 15.4 6.4 61 5-71 97-175 (228)
46 >1wrb_A DJVLGB; RNA helicase, 38.5 25 0.00075 15.4 7.6 63 5-72 103-183 (253)
47 >3fe2_A Probable ATP-dependent 36.0 28 0.00082 15.1 8.1 62 5-71 105-184 (242)
48 >3csk_A Probable dipeptidyl-pe 33.9 9.4 0.00028 18.0 -0.1 17 134-150 1-17 (88)
49 >3kwm_A Ribose-5-phosphate iso 33.1 11 0.00033 17.6 0.1 26 34-59 25-50 (224)
50 >3h1q_A Ethanolamine utilizati 32.6 32 0.00094 14.8 3.1 43 15-57 68-111 (119)
51 >1hv8_A Putative ATP-dependent 31.9 33 0.00096 14.7 9.6 119 4-139 76-211 (211)
52 >2b8n_A Glycerate kinase, puta 30.8 18 0.00052 16.3 0.9 19 38-56 18-36 (227)
53 >2oas_A ATOA, 4-hydroxybutyrat 30.6 34 0.001 14.6 3.8 36 34-69 17-53 (181)
54 >2z0m_A 337AA long hypothetica 30.1 35 0.001 14.5 6.1 53 20-72 69-138 (192)
55 >3dpi_A NAD+ synthetase; ssgci 29.0 36 0.0011 14.4 7.5 59 11-71 3-65 (147)
56 >1o8b_A Ribose 5-phosphate iso 28.6 21 0.00063 15.8 1.0 48 12-71 7-54 (145)
57 >2ab1_A Hypothetical protein; 28.2 37 0.0011 14.4 2.1 19 124-142 57-75 (122)
58 >1xho_A Chorismate mutase; sou 26.6 40 0.0012 14.1 2.1 70 10-79 44-114 (148)
59 >1qde_A EIF4A, translation ini 24.5 44 0.0013 13.9 6.0 63 5-72 85-164 (224)
60 >1vbk_A Hypothetical protein P 24.4 24 0.0007 15.6 0.5 39 32-71 5-43 (119)
61 >1k8k_A ARP3, actin-like prote 24.1 24 0.00071 15.5 0.6 18 38-55 86-104 (140)
62 >2pjm_A Ribose-5-phosphate iso 24.0 45 0.0013 13.8 2.7 24 34-57 19-42 (226)
63 >1uaa_A REP helicase, protein 23.9 45 0.0013 13.8 6.3 58 4-61 35-92 (229)
64 >3ctp_A Periplasmic binding pr 23.8 45 0.0013 13.8 2.8 103 32-148 13-123 (130)
65 >2a7y_A Hypothetical protein R 23.4 39 0.0012 14.2 1.5 22 127-151 38-59 (83)
66 >3g85_A Transcriptional regula 22.7 48 0.0014 13.7 8.9 103 32-146 13-124 (134)
67 >3g5o_B Uncharacterized protei 22.0 39 0.0011 14.2 1.3 32 1-32 15-50 (102)
68 >2fts_A Gephyrin; gephyrin, ne 21.9 49 0.0015 13.6 6.7 73 62-143 22-106 (174)
69 >2o8v_A Phosphoadenosine phosp 21.8 50 0.0015 13.6 5.4 57 14-73 23-81 (252)
70 >2cyj_A Hypothetical protein P 21.5 50 0.0015 13.5 3.0 24 120-143 52-75 (118)
71 >3hhe_A Ribose-5-phosphate iso 21.4 51 0.0015 13.5 4.1 38 34-71 40-77 (168)
72 >1rcu_A Conserved hypothetical 21.3 51 0.0015 13.5 4.3 18 100-117 122-139 (195)
73 >3d3u_A 4-hydroxybutyrate COA- 20.9 52 0.0015 13.5 5.3 36 34-69 23-59 (187)
74 >2j0s_A ATP-dependent RNA heli 20.9 52 0.0015 13.5 6.2 62 6-72 109-188 (244)
No 1
>>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} (A:)
Probab=100.00 E-value=0 Score=378.45 Aligned_cols=228 Identities=32% Similarity=0.487 Sum_probs=209.0
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH
Q ss_conf 72899948989999999999999999999728977999879864699998787630795323899813210035673202
Q gi|254780505|r 3 QYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSN 82 (234)
Q Consensus 3 ~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn 82 (234)
++|+++|+|.+++++.+|++|++.+++.+++++.++|+||||+||..+|+.|++..++|+||+||++||||||.+|++||
T Consensus 2 ~mk~~~~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~i~lsGGstp~~ly~~L~~~~i~w~~v~~f~~DEr~v~~~~~~Sn 81 (232)
T 3lhi_A 2 XFVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQKDLDWKNVGITLADERIVPTNHADSN 81 (232)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHTSCCCGGGEEEEESEEESSCTTSTTCH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHHH
T ss_conf 72699769999999999999999999999977998999879752999999998747980016999521454798662738
Q ss_pred HHHHHHHHHCCCCCCCCEEECCCCC--CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCC
Q ss_conf 7889997623567763214445887--89899999999999631587764899447887714340278641002215667
Q gi|254780505|r 83 QSFISKFFLQNKAQKASFIPLYYPQ--KTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHT 160 (234)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~ 160 (234)
+++++++|+++..++..+++.+.+. .+.+.++..|+..+... ++||+++||||+||||||||||++.++...++..
T Consensus 82 ~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~--~~~Dl~lLGiG~DGHiaslfP~~~~~~~~~~t~~ 159 (232)
T 3lhi_A 82 TGLVREYLLKNKAAAAVWIPXVEDGKTETELHPDAVVDYALKHY--KQPDVLILGXGNDGHTASIFPKAPQFQTAIDGSA 159 (232)
T ss_dssp HHHHHHHTSSGGGGGSEECCSSCTTCCGGGCCHHHHHHHHHHHC--CCCSEEEECCCTTSCBTTBCTTCTTHHHHHCCTT
T ss_pred HHHHHHHHHCCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCCEEECCCCCCHHHHHHCCCC
T ss_conf 99999986147785555500357877606789999999887306--9988899755788744860699804433320156
Q ss_pred CCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEEC
Q ss_conf 4318995389987215870878884158299998183489999999808983206089996189996899833
Q gi|254780505|r 161 PRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWT 233 (234)
Q Consensus 161 ~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~W~ 233 (234)
....+....+.+|++|||||++.|++|++++|+++|++|+.+++++++++ +.++||++++.|+++++.+||.
T Consensus 160 ~~~~~~~~~~~~p~~riTlt~~~l~~A~~i~~~~~G~~K~~~v~~~l~~~-~~~~Pas~l~~~~~~~~~~~~D 231 (232)
T 3lhi_A 160 GVALVHTTPVTAPHERISXTLDAIAHTGHVFLAIQGEEKKAVFDQAAQGE-NREYPISLVLNHQGVNCHVFYA 231 (232)
T ss_dssp CCCEEEECCSSSSSCEEEECHHHHHTCSEEEEEEESHHHHHHHHHHHTSC-CTTSTHHHHHTSTTCCEEEEEE
T ss_pred CEEEEECCCCCCCCEEEECCHHHHHHHCEEEEEEECHHHHHHHHHHHHCC-CCCCCHHHHHHCCCCEEEEEEC
T ss_conf 61477327899998579758999995092899998889999999997189-8446288994289975999951
No 2
>>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogenic protozoa consortium, SGPP, leishmaniasis; 1.70A {Leishmania braziliensismhom} PDB: 3ch7_A (A:)
Probab=100.00 E-value=0 Score=376.38 Aligned_cols=230 Identities=20% Similarity=0.253 Sum_probs=200.1
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH---CCCCCCEEEEECCCCCCCCCC
Q ss_conf 87289994898999999999999999999972897799987986469999878763---079532389981321003567
Q gi|254780505|r 2 LQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII---NVDWHKVVVTLVDERFVPLEN 78 (234)
Q Consensus 2 ~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~---~~~w~kv~~~~~DER~V~~~~ 78 (234)
|.+++++|+|.+++++.+|+.|++.+++.+++++.++|+||||+||..+|+.|++. .++|+||+||++||||||.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~i~lsgG~tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~ 83 (267)
T 3css_A 4 FAPTVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKDLALLQQHAVQFILGDERLLSEDD 83 (267)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSSTTHHHHHHHHHHSHHHHHTTCEEEEESEEESSCTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC
T ss_conf 89706996899999999999999999999862899899978982299999999865110255416999973565168678
Q ss_pred CCCHHHHHHHHHHCCCCCCC----------CEEE-CCCCCCCHHHHHHHHHHHHHHHCC-----------CCCCEEEECC
Q ss_conf 32027889997623567763----------2144-458878989999999999963158-----------7764899447
Q gi|254780505|r 79 LRSNQSFISKFFLQNKAQKA----------SFIP-LYYPQKTIEEAIRIANEKICQLIH-----------FPFDVVVLGM 136 (234)
Q Consensus 79 ~~Sn~~~~~~~ll~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~Dl~lLGi 136 (234)
++||+.++++.|+++++.+. .+++ +..+..+++++|++|++.++.... ++||+++|||
T Consensus 84 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~Dl~lLG~ 163 (267)
T 3css_A 84 EQSNFSMATKALLRDVPSSDVISIDRRAALATSKDEKGGLDGAWAVAQDYEVKLLNCLPCKQINGTAKSVPVVDIVLLGF 163 (267)
T ss_dssp TTSHHHHHHHHTGGGSCGGGBCCCCCHHHHTTTTCTTTTHHHHHHHHHHHHHHHHHHSCEEECTTSSCEEECCSEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEECC
T ss_conf 25699999999872586765256664433334565445544799999999999998500233331035588765785168
Q ss_pred CCCCCEEEECCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88771434027864100221566743189953899872158708788841582999981834899999998089832060
Q gi|254780505|r 137 GIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMP 216 (234)
Q Consensus 137 G~DGH~ASlFP~~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~P 216 (234)
|+||||||||||++.++...... ........+.+|++|||||++.|++||+|+|+++|++|+++|+++++++++.++|
T Consensus 164 G~DGH~AslfP~~~~l~~~~~~~--~~~~~~~~~~~p~~riTlt~~~l~~a~~i~ll~~G~~K~~~v~~~l~~~~~~~~P 241 (267)
T 3css_A 164 GSDGHTASIFPDSVAATDEEHVV--SVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESPTDPLP 241 (267)
T ss_dssp CTTSCBTTBCTTSGGGGCCSCSE--EEECCCTTCSSCSCEEEECHHHHHHCSEEEEEECSGGGHHHHHHHHCSSCCSSCC
T ss_pred CCCCCEEECCCCCCCCCCCCCEE--EEECCCCCCCCCEEEEEECHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf 88872131279973335541124--5404677789982377404777622166999976889999999998289976678
Q ss_pred HHHHHHCCCCCEEEEEC
Q ss_conf 89996189996899833
Q gi|254780505|r 217 IRAILWNAQSPLEVHWT 233 (234)
Q Consensus 217 as~ll~~~~~~~~V~W~ 233 (234)
++.++++.+..+.+||-
T Consensus 242 ~s~l~~~~~~~~~~~~D 258 (267)
T 3css_A 242 VSRFLRDCRGSVTLLLD 258 (267)
T ss_dssp GGGGGGGCSSEEEEEEC
T ss_pred HHHHHHCCCCCEEEEEE
T ss_conf 78996278998899983
No 3
>>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A* (A:)
Probab=100.00 E-value=0 Score=368.96 Aligned_cols=230 Identities=20% Similarity=0.240 Sum_probs=200.4
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCCCCCC
Q ss_conf 87289994898999999999999999999972897799987986469999878763----07953238998132100356
Q gi|254780505|r 2 LQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERFVPLE 77 (234)
Q Consensus 2 ~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~V~~~ 77 (234)
|++++++|+|.+++++.+|+++++.+++++++++.++|+||||+||..+|+.|++. .++|+||+||++||||||.+
T Consensus 3 ~~~~~~v~~~~~~l~~~~a~~i~~~i~~~~~~~~~~~i~lsGGstp~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~v~~~ 82 (266)
T 3eb9_A 3 FKPTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREKRALRFFMGDERMVPAD 82 (266)
T ss_dssp CCCEEEEESSHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCSHHHHHHHHHHHHHHHHHHTTSCCEEEEESEEESSCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC
T ss_conf 99889998999999999999999999999984899899973878899999999874120166634489997000515877
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC--------CCCHHHHHHHHHHHHHHHCC-----------CCCCEEEECCCC
Q ss_conf 73202788999762356776321444588--------78989999999999963158-----------776489944788
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP--------QKTIEEAIRIANEKICQLIH-----------FPFDVVVLGMGI 138 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----------~~~Dl~lLGiG~ 138 (234)
|++||++++++.|++++.++..+++.... ..+++++|++|++.++.... ++||+++||||+
T Consensus 83 ~~~Sn~~~~~~~l~~~l~i~~~~i~~~~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~Dl~lLGiG~ 162 (266)
T 3eb9_A 83 STDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADAMRVAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGS 162 (266)
T ss_dssp STTCHHHHHHHHTGGGSCGGGEECCCCTTCCTTSCCCHHHHHHHHHHHHHHHHHHSCEEETTTTSCEEECCSEEEECCCT
T ss_pred CCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 62539999999987238486527677766785200241249999999999999751311000013578865589964557
Q ss_pred CCCEEEECCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 77143402786410022156674318995389987215870878884158299998183489999999808983206089
Q gi|254780505|r 139 DGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIR 218 (234)
Q Consensus 139 DGH~ASlFP~~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas 218 (234)
||||||||||++.+...............+.+.+|++|||||++.|++|++|+|+++|++|+.+++++++++++..+|++
T Consensus 163 DGH~AslfP~~~~~~~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~~~~~G~~K~~~v~~~l~~~~~~~~Pas 242 (266)
T 3eb9_A 163 DGHTASIFPGSQAEKETDGKVVVSVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPVAR 242 (266)
T ss_dssp TSCBTTBCTTCSGGGCCSSSCSEEEECCCTTCSSCSCEEEECHHHHHTCSEEEEEECCGGGHHHHHHHHCSSCSSCCGGG
T ss_pred CCCEEECCCCCHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 88556427985122210232110110467788764356751603540767799997588999999999828986668488
Q ss_pred HHHHCCCCCEEEEE
Q ss_conf 99618999689983
Q gi|254780505|r 219 AILWNAQSPLEVHW 232 (234)
Q Consensus 219 ~ll~~~~~~~~V~W 232 (234)
.|.. .+..+.+||
T Consensus 243 ~l~~-~~~~~~~~~ 255 (266)
T 3eb9_A 243 FLRG-CEGNVSFLL 255 (266)
T ss_dssp GGGG-CSSEEEEEE
T ss_pred HHCC-CCCCEEEEE
T ss_conf 8637-899699998
No 4
>>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.55A {Thermotoga maritima} (A:)
Probab=100.00 E-value=0 Score=370.69 Aligned_cols=221 Identities=22% Similarity=0.287 Sum_probs=198.7
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 98728999489899999999999999999997289779998798646999987876307953238998132100356732
Q gi|254780505|r 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 1 M~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
|+..++++|+|.+++++++|+.+++.+++.+++++.++|+||||+||..+|+.|.+..++|+||+||++||||||.+|++
T Consensus 11 ~~~~~~~i~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~i~lsgG~tp~~~~~~l~~~~i~w~~v~~f~~DEr~v~~~~~~ 90 (232)
T 1vl1_A 11 HHMEKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERYVPLDSDQ 90 (232)
T ss_dssp ----CEEEEEESSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTTSCCCGGGEEEEESEEESSCTTSTT
T ss_pred HHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCCCH
T ss_conf 30036899978899999999999999999997589989998899419999999987468810369997431146876512
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCC
Q ss_conf 02788999762356776321444588789899999999999631587764899447887714340278641002215667
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHT 160 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~ 160 (234)
||+++++++|+++++++..+++.+.+..++++++..|.+.+.+.. ++||+++||||+||||||||||++.+. .
T Consensus 91 Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~lLGiG~DGHiAslfP~~~~~~------~ 163 (232)
T 1vl1_A 91 SNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSAT-DQFDLAILGMGPDGHVASIFDLETGNK------D 163 (232)
T ss_dssp CHHHHHHHHTTTTSCCCGGGEECCCTTSCHHHHHHHHHHHHHHHC-SSCSEEEECCCTTSCBTTBCSHHHHTC------S
T ss_pred HHHHHHHHHHHCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCC------C
T ss_conf 156789998732034442004424457999999998788875035-520488745778886542578764320------0
Q ss_pred CCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 43189953899872158708788841582999981834899999998089832060899961899968998
Q gi|254780505|r 161 PRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 (234)
Q Consensus 161 ~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~ 231 (234)
.+.+++.+.+.+|++|||||++.|++|++++|+++|++|+.+++++++++. +||++|+.|+++.+++.
T Consensus 164 ~~~~~~~~~~~~p~~riTlt~~~l~~a~~i~~~~~G~~K~~~i~~~l~~~~---~Pas~l~~~~~~~~~~D 231 (232)
T 1vl1_A 164 NLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDTP---LPAYFVRGKEKTVWFVG 231 (232)
T ss_dssp SSEEECSSBTTTTBCEEEECHHHHTTCSEEEEEEESHHHHHHHHHHHTTCC---CGGGGCCCSSEEEEEEE
T ss_pred CCEEEECCCCCCCCCEEECCHHHHHHHCEEEEEECCHHHHHHHHHHHHCCC---CCHHHHCCCCCEEEEEC
T ss_conf 413530588899868797688999822949999818899999999970999---87588666998899972
No 5
>>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax} (A:)
Probab=100.00 E-value=0 Score=364.73 Aligned_cols=233 Identities=22% Similarity=0.233 Sum_probs=205.2
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHH--HHHHCCCEEEEECCCCCHHHHHHHHHHH---CCCCCCEEEEECCCCCCC
Q ss_conf 98728999489899999999999999999--9972897799987986469999878763---079532389981321003
Q gi|254780505|r 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSI--GITNKGTASIALSGGLTPRFFLEELSII---NVDWHKVVVTLVDERFVP 75 (234)
Q Consensus 1 M~~~~i~i~~~~~~l~~~~a~~i~~~i~~--~i~~~~~~~i~lsGGstp~~~y~~L~~~---~~~w~kv~~~~~DER~V~ 75 (234)
|.++++++++|.+++++.+|+.|++.|++ ++++++.|+|+||||+||..+|+.|++. ++||+||++|++|||+|+
T Consensus 24 ~~~m~~~i~~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~~i~lsgG~tp~~ly~~L~~~~~~~i~w~~v~~f~~DEr~v~ 103 (312)
T 3e15_A 24 LHNVKYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVKDIKIDTSKLIFFIIDERYKR 103 (312)
T ss_dssp ETTEEEEEESSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEECCSHHHHHHHHHHTTCCSSCCCGGGCEEEESEEECCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHEEEEECCEECCC
T ss_conf 45334674278889999999999999999886524998899968980199999999862541898134589958177889
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCCEEEECCCCCCCE
Q ss_conf 567320278899976235677632144458878989999999999963158--776489944788771434027864100
Q gi|254780505|r 76 LENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH--FPFDVVVLGMGIDGHTASFFPKGDTLS 153 (234)
Q Consensus 76 ~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dl~lLGiG~DGH~ASlFP~~~~l~ 153 (234)
++|++||++++++.|+++.+.+..+++......++++++++|++.+.+..+ ++||+++||||+||||||||||++.++
T Consensus 104 ~~~~~sn~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~Di~lLGiG~DGHiAslfPg~~~~~ 183 (312)
T 3e15_A 104 DDHKFSNYNNIKFLFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKNXVKKYTKVDIAILGXGSDFHIASLFPNIFFNI 183 (312)
T ss_dssp TCCTTCHHHHHHHHHHHTTCCHHHHEECCCTTSCHHHHHHHHHHHHHHHHHHHCSCCEEEECCCTTSCBTTBCSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCCCCCCC
T ss_conf 99736289999976533577777625567865479999988677788740458870389864778873463378973100
Q ss_pred E---------------------------ECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHH
Q ss_conf 2---------------------------2156674318995389987215870878884158299998183489999999
Q gi|254780505|r 154 I---------------------------ALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKA 206 (234)
Q Consensus 154 ~---------------------------~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~ 206 (234)
. .++......++..+.+.+|++|||||++.|++|++|+|+++|++|+++++++
T Consensus 184 ~~~~~~~~~~~L~~~t~~~n~~~f~~~~~~~~~~~~~~~~~~~~~~P~~riTlg~~~I~~A~~i~l~~~G~~Ka~~v~~~ 263 (312)
T 3e15_A 184 YXNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSKIFLLNSTDKLDLWKNX 263 (312)
T ss_dssp HHHHTGGGSSSCGGGCCCCC---CCHHHHHTTCCCSEEEEECCSTTCSEEEEECHHHHHTCSEEEEEECSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCEEEECHHHHHHHCEEEEEECCHHHHHHHHHH
T ss_conf 12212111001100110012332110011000124300257788899734971999998409089998288999999999
Q ss_pred HCCCCC----CCCCHHHHHHCCCCCEEEEEC
Q ss_conf 808983----206089996189996899833
Q gi|254780505|r 207 ISGDDA----LEMPIRAILWNAQSPLEVHWT 233 (234)
Q Consensus 207 l~~~~~----~~~Pas~ll~~~~~~~~V~W~ 233 (234)
++++.+ ..|||++|+.|+++.+++.=+
T Consensus 264 l~~~~t~~~~~~~Pas~l~~h~~~~~~~D~~ 294 (312)
T 3e15_A 264 LLKSYVDVNYCLYPAVYLIDSXNTTVVTCGY 294 (312)
T ss_dssp HHHTTTTCCTTTCHHHHHHHTSCEEEEEESC
T ss_pred HHCCCCCCCCCCCCHHHHHCCCCEEEEEECC
T ss_conf 8389988765668789980288839998362
No 6
>>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME disease, non-hodgkin lymphomas; 2.20A {Borrelia burgdorferi B31} (A:)
Probab=100.00 E-value=0 Score=359.31 Aligned_cols=231 Identities=17% Similarity=0.188 Sum_probs=199.2
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCC-CC
Q ss_conf 87289994898999999999999999999-972897799987986469999878763----0795323899813210-03
Q gi|254780505|r 2 LQYKLYVAENKKRLAQKLAKKVAEQLSIG-ITNKGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERF-VP 75 (234)
Q Consensus 2 ~~~~i~i~~~~~~l~~~~a~~i~~~i~~~-i~~~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~-V~ 75 (234)
..+++++|+|++++++++|+.|++.++++ +++++.++|+||||+||..+|+.|++. .++|+||+||++|||| ||
T Consensus 20 ~~~~~~i~~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~ialsGGstp~~~y~~l~~~~~~~~i~~~~v~~f~~DEr~~vp 99 (289)
T 3hn6_A 20 GSMRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMDEYIGIE 99 (289)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCC
T ss_conf 97679995999999999999999999987660289859997898689999999999886269974786999573116799
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEE
Q ss_conf 5673202788999762356776321444588-789899999999999631587764899447887714340278641002
Q gi|254780505|r 76 LENLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSI 154 (234)
Q Consensus 76 ~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~ 154 (234)
.+|++||+++++++|+++++.+..+++.+.. ..+++++++.|++.+... ++||+++||||+||||||||||++.++.
T Consensus 100 ~~~~~Sn~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~i~~~--~~~Dl~lLGiG~DGH~AslfP~~~~~~~ 177 (289)
T 3hn6_A 100 ENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEEYEKKIKSF--GGIMLFVGGIGPDGHIAFNEPGSSLTSR 177 (289)
T ss_dssp TTSTTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHT--TSCSEEEEECCTTSCBTTBCTTCCTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEECCCCCCCCCC
T ss_conf 99701399999999764156528662247777799999999999987545--9731998437888767654779866665
Q ss_pred E----CCCC---CCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 2----1566---74318995389987215870878884158299998183489999999808983206089996189996
Q gi|254780505|r 155 A----LDTH---TPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSP 227 (234)
Q Consensus 155 ~----~~~~---~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~ 227 (234)
. ++.. ..........+.+|.+|||||++.|++|++|+|+++|++|++++++++.++++..+|+++++.|+++.
T Consensus 178 ~~~~~L~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~A~~i~~~~~G~~K~~~l~~~l~~~~~~~~Pas~l~~~~~~~ 257 (289)
T 3hn6_A 178 TRIKTLTQDTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAI 257 (289)
T ss_dssp SEEEECCHHHHHHHGGGTTTCTTTSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEE
T ss_pred CEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEE
T ss_conf 40564150058875311457888899720217999996024299998386899999999838999877869880399879
Q ss_pred EEEEECC
Q ss_conf 8998339
Q gi|254780505|r 228 LEVHWTS 234 (234)
Q Consensus 228 ~~V~W~~ 234 (234)
+++..+|
T Consensus 258 ~~~D~~A 264 (289)
T 3hn6_A 258 IVSDKNA 264 (289)
T ss_dssp EEEESGG
T ss_pred EEEEHHH
T ss_conf 9985899
No 7
>>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} (A:)
Probab=100.00 E-value=0 Score=357.06 Aligned_cols=229 Identities=18% Similarity=0.135 Sum_probs=198.3
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCCCC-CC
Q ss_conf 289994898999999999999999999-97289779998798646999987876----3079532389981321003-56
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIG-ITNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERFVP-LE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~-i~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~V~-~~ 77 (234)
+|+++|+|++++++++|+.|++.++++ +++++.++|+||||+||..+|+.|++ ..++|++|+||++|||||+ .+
T Consensus 1 Mki~i~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsGGstp~~ly~~l~~~~~~~~i~~~~v~~f~~DEr~v~~~~ 80 (289)
T 1ne7_A 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRD 80 (289)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTT
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCCCC
T ss_conf 94899799999999999999999997241669978999799865999999999998626998779599953671457887
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE-
Q ss_conf 73202788999762356776321444588-7898999999999996315877648994478877143402786410022-
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA- 155 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~- 155 (234)
|++||++++++.|+++++++..+++.+.. ..++++++.+|++.+...+ +||+++||||+|||+|||||+++.++..
T Consensus 81 ~~~Sn~~~~~~~L~~~l~i~~~~v~~~~~~~~~~~~~~~~ye~~i~~~~--~~Dl~lLGiG~dGHiAs~fP~s~~~~~t~ 158 (289)
T 1ne7_A 81 HPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAG--GIELFVGGIGPDGHIAFNEPGSSLVSRTR 158 (289)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHTT--SCSEEEECCCTTCCSTTCCTTCCTTCCSE
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEECCCCCCCCCCCC
T ss_conf 5021899999997730564386640044667889999999999986369--86299833788854563478984333352
Q ss_pred ---CCCCC---CCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf ---15667---431899538998721587087888415829999818348999999980898320608999618999689
Q gi|254780505|r 156 ---LDTHT---PRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234)
Q Consensus 156 ---~~~~~---~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234)
++..+ .........+.+|++|||||++.|++|++|+++++|++|+.+++++++++++.++||+.++.|+++.++
T Consensus 159 ~~~l~~~t~~~~~~~~~~~~~~~p~~riTlgl~~i~~ak~i~ll~~G~~Ka~av~~~l~~~~~~~~Pas~l~~h~~~~~~ 238 (289)
T 1ne7_A 159 VKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFV 238 (289)
T ss_dssp EEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEE
T ss_pred EEEECCHHHHHHHHHCCCCCCCCCCEEEECCHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEE
T ss_conf 47604214777877505676789954774589999534508999848789999999981899887584987249987999
Q ss_pred EEECC
Q ss_conf 98339
Q gi|254780505|r 230 VHWTS 234 (234)
Q Consensus 230 V~W~~ 234 (234)
+.|+|
T Consensus 239 ~D~~A 243 (289)
T 1ne7_A 239 CDEDA 243 (289)
T ss_dssp EEGGG
T ss_pred EEHHH
T ss_conf 84799
No 8
>>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=100.00 E-value=0 Score=350.35 Aligned_cols=217 Identities=20% Similarity=0.263 Sum_probs=196.5
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCCCCCCC
Q ss_conf 7289994898999999999999999999972897799987986469999878763----079532389981321003567
Q gi|254780505|r 3 QYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERFVPLEN 78 (234)
Q Consensus 3 ~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~V~~~~ 78 (234)
.+|+++++|++++++++++.+.+. |++++.++|+||||+||..+|+.|.+. .++|+||+||++|||+||.+|
T Consensus 1 ~Mki~i~~~~~~l~~~~a~~i~~~----i~~~~~~~i~lsgG~tp~~~y~~l~~~~~~~~i~~~~v~~f~~DEr~v~~~~ 76 (238)
T 1y89_A 1 XINHKIFPTADAVVKSLADDXLAY----SQQGQPVHISLSGGSTPKXLFKLLASQPYANDIQWKNLHFWWGDERCVAPDD 76 (238)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHH----HTTSSCEEEEECCSHHHHHHHHHHTSTTHHHHSCGGGEEEEESEEESSCTTS
T ss_pred CCCEEEECCHHHHHHHHHHHHHHH----HHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 985388099999999999999999----9859988999838977999999998766415788434559887776068655
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCC-----CCCCEEEECCCCCCCEEEECCCCCCCE
Q ss_conf 320278899976235677632144458878989999999999963158-----776489944788771434027864100
Q gi|254780505|r 79 LRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH-----FPFDVVVLGMGIDGHTASFFPKGDTLS 153 (234)
Q Consensus 79 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dl~lLGiG~DGH~ASlFP~~~~l~ 153 (234)
++||+++++++|+++++.+..+++.+....++++++++|++.+++... ++||+++||||+|||||||||+++.++
T Consensus 77 ~~sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~a~~y~~~~~~~~~~i~~~~~~Dl~llGiG~dGH~AslfP~~~~~~ 156 (238)
T 1y89_A 77 AESNYGEANALLFSKINXPAQNIHRILGENEPQAEAERFAQAXAHVIPTENGTPVFDWILLGVGADGHTASLFPGQTDYA 156 (238)
T ss_dssp TTCHHHHHHHHTGGGSCCCGGGBCCCCTTSCHHHHHHHHHHHHHHHSCEETTEECCSEEEECCCTTSCBTTBCTTTCCTT
T ss_pred CCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCCCC
T ss_conf 43568887664302247653321135676674889999999999863431158877679853678885121379971003
Q ss_pred EECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC-CCCHHHHHHCCCCCEE
Q ss_conf 221566743189953899872158708788841582999981834899999998089832-0608999618999689
Q gi|254780505|r 154 IALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL-EMPIRAILWNAQSPLE 229 (234)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~-~~Pas~ll~~~~~~~~ 229 (234)
..+.+...+.+.+|++|||||++.|++|++|+|+++|++|+++++++++++.+. .+|++++..|++..++
T Consensus 157 ------~~~~~~~~~~~~~p~~riTlg~~~l~~a~~i~~~~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~h~~~~v~ 227 (238)
T 1y89_A 157 ------DANLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAEQLPYPAAKIHSTSGVTEW 227 (238)
T ss_dssp ------CCSSEEEEECTTTCCEEEEECHHHHHHSSEEEEEECSGGGHHHHHHHHHSCGGGCCCHHHHCCCSSSEEEE
T ss_pred ------CCCEEEECCCCCCCCCCCCCCHHHHHHHCEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEE
T ss_conf ------46415871588766210046799997209689997586899999999848999887688883569996899
No 9
>>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis} (A:)
Probab=100.00 E-value=0 Score=348.56 Aligned_cols=227 Identities=21% Similarity=0.310 Sum_probs=203.6
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH--HCCCCCCEEEEECCCCCCCCCC
Q ss_conf 98728999489899999999999999999997289779998798646999987876--3079532389981321003567
Q gi|254780505|r 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI--INVDWHKVVVTLVDERFVPLEN 78 (234)
Q Consensus 1 M~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~--~~~~w~kv~~~~~DER~V~~~~ 78 (234)
.|.+++++++|++++++.+|+.+++.+++++++++.++|+||||+||..+|+.|.. ++++|++|+||++||||||.+|
T Consensus 21 ~~~~~~~i~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~i~lsgG~tp~~~~~~l~~~~~~i~~~~v~~f~~DEr~v~~~~ 100 (268)
T 3ico_A 21 SMSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQAQQIEWSKVHLFWGDERYVPEDD 100 (268)
T ss_dssp ---CEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHHGGGSCGGGEEEEESEEECSCTTC
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHEEEEEEEEEECCCCC
T ss_conf 86048999799999999999999999999998679989998589589999999974342698246699932047069987
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCC-----CCCHHHHHHHHHHHHHHHCC-----CCCCEEEECCCCCCCEEEECCC
Q ss_conf 3202788999762356776321444588-----78989999999999963158-----7764899447887714340278
Q gi|254780505|r 79 LRSNQSFISKFFLQNKAQKASFIPLYYP-----QKTIEEAIRIANEKICQLIH-----FPFDVVVLGMGIDGHTASFFPK 148 (234)
Q Consensus 79 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~Dl~lLGiG~DGH~ASlFP~ 148 (234)
++||+++++++|+++.+.+..+++.+.. ..+++++++.|++.++.... ++||+++||||+|||+|||||+
T Consensus 101 ~~Sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~Dl~llGiG~dGH~as~fP~ 180 (268)
T 3ico_A 101 DERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPH 180 (268)
T ss_dssp TTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHSSTTCSSCCCSEEEECCCTTCCBTTBCTT
T ss_pred CCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEECCCC
T ss_conf 63779999998653258849970887675445556999999999999998422346898756899755688853655899
Q ss_pred CCCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 64100221566743189953899872158708788841582999981834899999998089832060899961899968
Q gi|254780505|r 149 GDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPL 228 (234)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~ 228 (234)
++.+.. .+.........+..|++|||||++.|++|++|+++++|++|++++++++.++.+..+||++++.|+++.+
T Consensus 181 ~~~~~~----~~~~~~~~~~~~~~p~~riTlgl~~i~~a~~ii~~~~G~~K~~~i~~~l~~~~~~~~Pas~l~~~~~~~~ 256 (268)
T 3ico_A 181 SPAVLE----STRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAVGRQNTLW 256 (268)
T ss_dssp CHHHHC----SSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTTCCTTTSGGGGCCCSSEEEE
T ss_pred CCCCCC----CCCCCCCCCCCCCCCCEEEECCHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEE
T ss_conf 832000----3443422247788998789757889960595899972889999999998189951256788747998799
Q ss_pred EEE
Q ss_conf 998
Q gi|254780505|r 229 EVH 231 (234)
Q Consensus 229 ~V~ 231 (234)
++.
T Consensus 257 i~D 259 (268)
T 3ico_A 257 LLD 259 (268)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 984
No 10
>>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase, multiple conformers; HET: 16G TLA; 1.73A {Escherichia coli} (A:)
Probab=100.00 E-value=0 Score=349.29 Aligned_cols=228 Identities=20% Similarity=0.205 Sum_probs=198.2
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCC-CCCC
Q ss_conf 28999489899999999999999999997289-7799987986469999878763----0795323899813210-0356
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKG-TASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERF-VPLE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~-~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~-V~~~ 77 (234)
+|+++++|.+++++++|+.+++.+++++++++ .++|+||||+||..+|+.|++. .++|++|+||++|||+ ||.+
T Consensus 1 Mki~i~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~ialsGG~tp~~~y~~L~~~~~~~~i~~~~v~~f~~DEr~~v~~~ 80 (266)
T 1fs5_A 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKE 80 (266)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTT
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECEEEECCCCC
T ss_conf 95899599999999999999999998776049984999899855999999999766515998556699932253078888
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC
Q ss_conf 73202788999762356776321444588-78989999999999963158776489944788771434027864100221
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL 156 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~ 156 (234)
|++||++++++.|+++.+.+..+++++.. ..++++++..|++.++... +||+++||||+|||+|||||+++..+...
T Consensus 81 ~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~--~~Dl~llGiG~DGH~AslfP~~~~~~~~~ 158 (266)
T 1fs5_A 81 HPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYG--KIHLFMGGVGNDGHIAFNEPASSLASRTR 158 (266)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHHC--CCSEEEECCCTTCCSTTCCSSCCTTCCSE
T ss_pred CHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEECCCCCCCCCCCE
T ss_conf 6588999999997741365432265256777889999999999887448--96099952556532440368983233332
Q ss_pred ----CCC---CCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf ----566---7431899538998721587087888415829999818348999999980898320608999618999689
Q gi|254780505|r 157 ----DTH---TPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234)
Q Consensus 157 ----~~~---~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234)
+.. .....+....+..|++|||||++.|++|++|+++++|++|+++++++++++.+..+||++++.|+++.++
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~ii~~~~G~~K~~~v~~~l~~~~~~~~Pas~l~~~~~~~~~ 238 (266)
T 1fs5_A 159 IKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMV 238 (266)
T ss_dssp EEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEE
T ss_pred EEECCHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEE
T ss_conf 66416567888765158888899951640899999705229999888799999999983899862455987039986999
Q ss_pred EEEC
Q ss_conf 9833
Q gi|254780505|r 230 VHWT 233 (234)
Q Consensus 230 V~W~ 233 (234)
+..+
T Consensus 239 ~D~~ 242 (266)
T 1fs5_A 239 CDEP 242 (266)
T ss_dssp ECSG
T ss_pred EEHH
T ss_conf 7079
No 11
>>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* (A:)
Probab=100.00 E-value=0 Score=337.58 Aligned_cols=222 Identities=19% Similarity=0.219 Sum_probs=193.5
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCCC-CCCC
Q ss_conf 289994898999999999999999999972897799987986469999878763----07953238998132100-3567
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERFV-PLEN 78 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~V-~~~~ 78 (234)
+|+++++|.+++++++|++|.+. |++++.++|+||||+||..+|+.|++. .++|+||+||++||||+ |.+|
T Consensus 1 mk~~v~~~~~~l~~~~a~~i~~~----i~~~~~~~i~lsgG~tp~~~y~~l~~~~~~~~i~~~~v~~~~~DEr~~~~~~~ 76 (242)
T 2bkx_A 1 MKVMECQTYEELSQIAARITADT----IKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDD 76 (242)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHH----HHHCTTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEEESEEETTCCTTS
T ss_pred CEEEEECCHHHHHHHHHHHHHHH----HHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHEEEEECEEEEECCCCC
T ss_conf 95899799999999999999999----99789879998898788999999987520257871357999553684358886
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECC
Q ss_conf 3202788999762356776321444588-789899999999999631587764899447887714340278641002215
Q gi|254780505|r 79 LRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALD 157 (234)
Q Consensus 79 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~ 157 (234)
++||+++++++|+++.+.+..+++++.. ..+++++++.|++.+... ++||+++||||+|||+|||||+++.++....
T Consensus 77 ~~sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~--~~~Dl~llGiG~dGH~aslfP~~~~~~~~~~ 154 (242)
T 2bkx_A 77 PNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDSL--GDTDIQLLGIGRNGHIGFNEPGTSFKSRTHV 154 (242)
T ss_dssp TTSHHHHHHHHTGGGSCCCGGGEECCCTTCSCHHHHHHHHHHHHHHT--TSCSEEEECCCTTSCBTTBCTTCCTTCCSEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCEEECCCCCCCCCCCCC
T ss_conf 03278899985103521455530467765211899999888888516--7877787357777753432566620000221
Q ss_pred C------CCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 6------6743189953899872158708788841582999981834899999998089832060899961899968998
Q gi|254780505|r 158 T------HTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 (234)
Q Consensus 158 ~------~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~ 231 (234)
. .......+...+.+|++|||||++.|++|++|+++++|++|+.+++++++++.+..+|++.++.|+++.+++.
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~p~~riTlt~~~l~~a~~v~~~~~G~~K~~~v~~~l~~~~~~~~Pas~l~~~~~~~~~~D 234 (242)
T 2bkx_A 155 VTLNEQTRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLID 234 (242)
T ss_dssp EECCHHHHHHHGGGSSSGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHHTCCCTTSGGGGGGGCSSEEEEEE
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCEEEECCHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEEE
T ss_conf 00110122201233588875441234068999963731699976879999999998289986465798644998799971
No 12
>>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism, hydrolase; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A* (A:)
Probab=100.00 E-value=1.1e-36 Score=244.35 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=179.4
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCC-CCCCCCCCCC
Q ss_conf 728999489899999999999999999997289779998798646999987876307953238998132-1003567320
Q gi|254780505|r 3 QYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDE-RFVPLENLRS 81 (234)
Q Consensus 3 ~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DE-R~V~~~~~~S 81 (234)
++|+++++|.+++++++|+++.+.++ ++.++|+|+||+|+..+|+.+....++|+++++|++|| |+++.++++|
T Consensus 1 ~m~~~v~~~~~~l~~~aA~~l~~~i~-----~g~~~i~is~G~T~~~~~~~~~~~~~~~~~v~~~~~~e~~~~~~~~~~s 75 (234)
T 2ri0_A 1 SMKTIKVKNKTEGSKVAFRMLEEEIT-----FGAKTLGLATGSTPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQS 75 (234)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHH-----TTCCEEEECCSSTTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHH-----CCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCHHH
T ss_conf 96499979999999999999999997-----5998799789723999999999717786569999525775068874667
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCC-
Q ss_conf 2788999762356776321444588789899999999999631587764899447887714340278641002215667-
Q gi|254780505|r 82 NQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHT- 160 (234)
Q Consensus 82 n~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~- 160 (234)
|+..++..++.+.+.+..+.+.. ...++.+++..+.... .. .++|++++|||.|||+||+||++...+.......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~--~~~Diai~GiG~~g~~a~~~~~~~~~~~~~~~~~~ 151 (234)
T 2ri0_A 76 YAYFMKQNLFAAKPFKKSYLPNG-LAADLAKETEYYDQIL-AQ--YPIDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLT 151 (234)
T ss_dssp HHHHHHHHTTTTSCCSEEECCCT-TCSCHHHHHHHHHHHH-HH--SCCSEEEECCCTTSCBTTBCTTCCTTCCSEEEECC
T ss_pred HHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHHHHH-HC--CCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 99999997405787365512677-8889999999999897-40--78768998137767045325565311123333341
Q ss_pred -----CCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf -----43189953899872158708788841582999981834899999998089832060899961899968998
Q gi|254780505|r 161 -----PRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 (234)
Q Consensus 161 -----~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~ 231 (234)
.....+...+..|.+|||+|++.|++++++++++.|++|+.+++.+++|+.+..+|+++++.|++..+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~iti~l~~L~~~~~~i~va~G~~K~~ai~~al~g~~~~~~pa~~l~~~~~~~li~D 227 (234)
T 2ri0_A 152 PSTIAANSRFFEKAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVD 227 (234)
T ss_dssp HHHHHHHHTTCSCGGGSCCEEEECCHHHHHTSSEEEEEECSGGGHHHHHHHHHSCCCTTSGGGGGGGCSSEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEEE
T ss_conf 6888865302456788983268638789515777999977889999999998389986567599814998799971
No 13
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:55-315)
Probab=99.96 E-value=1.5e-29 Score=200.77 Aligned_cols=206 Identities=13% Similarity=0.025 Sum_probs=154.5
Q ss_pred EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 899948----9899999999999999999997289779998798646999987876307953238998132100356732
Q gi|254780505|r 5 KLYVAE----NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 5 ~i~i~~----~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
+++|.+ +.+++.+.+++.+++.+.+.+ ++.++|++++|+||..+|+.|... .+|.+++|+++||++++..+++
T Consensus 23 ~~~Vv~~~~~~~~~~~~~ia~~aa~~l~~~l--~~~~~igi~~G~t~~~~~~~l~~~-~~~~~v~~~~l~g~~~~~~~~~ 99 (261)
T 2w48_A 23 EAVVASSDGLLEEEQLSAMGQHGALLVDRLL--EPGDIIGFSWGRAVRSLVENLPQR-SQSRQVICVPIIGGPSGKLESR 99 (261)
T ss_dssp EEEEECC----CCHHHHHHHHHHHHHHHHHC--CTTCEEEECCSHHHHHHHTTSCCC-SSCCCCEEEESBCBCTTSSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCEEEEECHHHHHHHHHHHCCC-CCCCCEEEEEECCCCCCCCCCC
T ss_conf 8999589976516899999999999999757--789989982459999999970100-4678738996047768766665
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHH-HHHHHHHHHHHHHC--CCCCCEEEECCCCCCCEEEECCCCCCCEEECC
Q ss_conf 0278899976235677632144458878989-99999999996315--87764899447887714340278641002215
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIE-EAIRIANEKICQLI--HFPFDVVVLGMGIDGHTASFFPKGDTLSIALD 157 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~ 157 (234)
+|+.++++.|+++...+..++|.+....+.+ .++..++..++... ...+|++++|||+|||++|+||++........
T Consensus 100 ~~~~~i~~~la~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diai~GiG~~g~~~~~~~~~~~~~~~~~ 179 (261)
T 2w48_A 100 YHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESD 179 (261)
T ss_dssp GCHHHHHHHHHHHTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBCTTCCSSSCHHHHHCTHHHH
T ss_pred CCHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHCCCCCHHHHH
T ss_conf 68899999999983896205566545899999999996737999999998489899944776667640230588999999
Q ss_pred CCCC--------CCEEEE----CCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC
Q ss_conf 6674--------318995----3899872158708788841582999981834899999998089832
Q gi|254780505|r 158 THTP--------RSVIAI----KDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL 213 (234)
Q Consensus 158 ~~~~--------~~~~~~----~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~ 213 (234)
.... ..++.. ...+.|.++||+|++.|+++++++++|+|++|++|++.++++....
T Consensus 180 ~~~~~~~vg~~~~~~~d~~G~~~~~~~~~~~isi~l~~l~~~~~vi~ia~G~~K~~ai~~aL~~~~~~ 247 (261)
T 2w48_A 180 DLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYIN 247 (261)
T ss_dssp HHHHTTEEEEETTEEEETTSCBCCCSSGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTSCS
T ss_pred HHHHCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 99863869999987702589998786666343078899726897899967824499999998269998
No 14
>>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae TIGR4} (A:)
Probab=99.96 E-value=2.7e-30 Score=205.23 Aligned_cols=209 Identities=11% Similarity=0.028 Sum_probs=149.2
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 48989999999999999999999728977999879864699998787630795323899813210035673202788999
Q gi|254780505|r 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISK 88 (234)
Q Consensus 9 ~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~ 88 (234)
+++.+++.+++++..++.+.+.+ ++...|+|+||+||..+|+.|... +|++++||++|||+++.++..+|+..+++
T Consensus 33 ~~~~~~~~~~va~~aa~~l~~~~--~~~~~igis~G~t~~~~~~~l~~~--~~~~v~v~~l~g~~~~~~~~~~~~~~~~~ 108 (266)
T 2gnp_A 33 DDTPTILSERISQVAAGVLRNLI--DDNXKIGFSWGKSLSNLVDLIHSK--SVRNVHFYPLAGGPSHIHAKYHVNTLIYE 108 (266)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHC--CTTCEEEECCSHHHHHHHHHCCCC--CCSSCEEEESBCCCTTSCGGGSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 65767899999999999999747--899989982688899999971644--66772499436876777565689999999
Q ss_pred HHHCCCCCCCCEEECCCCC-----CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCCCC-
Q ss_conf 7623567763214445887-----8989999999999963158776489944788771434027864100221566743-
Q gi|254780505|r 89 FFLQNKAQKASFIPLYYPQ-----KTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPR- 162 (234)
Q Consensus 89 ~ll~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~~~- 162 (234)
.... ...+..+.+.+.-. .+...+++.|.+.++... .+|++++|||.|||+|||||++.............
T Consensus 109 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~--~~DiailGiG~~gh~a~l~~~~~~~~~~~~~~~~~~ 185 (266)
T 2gnp_A 109 XSRK-FHGECTFXNATIVQENKLLADGILQSRYFENLKNSWK--DLDIAVVGIGDFSNKGKHQWLDXLTEDDFKELTKVK 185 (266)
T ss_dssp HHHH-HTCEECCCCSCSBCSSHHHHHHHHTSTTTHHHHHHTT--SCSEEEECCEECSHHHHHTTTTTSCHHHHHHHHHTT
T ss_pred HHHH-HCCCEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 9998-3897032446667799999999985769999999984--189999955667776530236899989999998618
Q ss_pred -----CEEEECC------CCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC-----CCCHHHHHHCC
Q ss_conf -----1899538------99872158708788841582999981834899999998089832-----06089996189
Q gi|254780505|r 163 -----SVIAIKD------YTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL-----EMPIRAILWNA 224 (234)
Q Consensus 163 -----~~~~~~~------~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~-----~~Pas~ll~~~ 224 (234)
.....+. ...|.+|||||++.|+++++++++++|++|+.+++.+++++..+ +-||+.|+++.
T Consensus 186 ~vg~i~~~~~d~~G~~~~~~~~~~~iti~l~~l~~~~~vi~ia~G~~K~~ai~~al~~~~~~~litD~~~A~~lL~~~ 263 (266)
T 2gnp_A 186 TVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEED 263 (266)
T ss_dssp CCEEETTEEECTTSCCCCHHHHTTBCBCCHHHHTTSSEEEEECCSGGGHHHHHHHHHTTCCSEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf 399998636146899877777751440577897068978999558254999999982699978996999999998601
No 15
>>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} (A:)
Probab=99.96 E-value=5.6e-29 Score=197.19 Aligned_cols=199 Identities=12% Similarity=0.096 Sum_probs=149.8
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 948989999999999999999999728977999879-8646999987876307953238998132100356732027889
Q gi|254780505|r 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSG-GLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFI 86 (234)
Q Consensus 8 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsG-Gstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~ 86 (234)
++++.+++.+.+++.+++.+.+.++. ...+++++ |+++..+++.+....++|++|+|+++||++ .++++||+..+
T Consensus 32 ~~~~~~~~~~~va~~aa~~l~~~l~~--~~~i~i~~ggt~~~~~~~~~~~~~~~~~~v~~v~~~g~~--~~~~~~~~~~~ 107 (264)
T 2r5f_A 32 EPDDEESIKQAIGSAAAHYLETSLSA--QDHIGISSWSSTIRAXVSHXHPQPGKQSAQEVVQLLGGV--GNKGAFEATLL 107 (264)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHCCT--TCEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECC--C--CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCCC--CCCCCCCHHHH
T ss_conf 99975899999999999999986665--987999758579999998627566666882599605888--88887589999
Q ss_pred HHHHHCCCCCCCCEEECCCCCCCHHHH-----HHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC-CCCC
Q ss_conf 997623567763214445887898999-----9999999963158776489944788771434027864100221-5667
Q gi|254780505|r 87 SKFFLQNKAQKASFIPLYYPQKTIEEA-----IRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL-DTHT 160 (234)
Q Consensus 87 ~~~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~-~~~~ 160 (234)
.+.|.++...+..+++.+....++++. ...+.+.+... .++|+++||||+|||+||+||+++.+.... ....
T Consensus 108 ~~~la~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~l~~~--~~~DiallGiG~~gh~asl~~~~~~~~~~~~~~l~ 185 (264)
T 2r5f_A 108 TQRLATLLNCPAFLLPSQSIEQSVESKQRIVEXEEVKEVLHRF--DSITLAIVGIGELEPSQLLRNSGNYYTEDXLRVLA 185 (264)
T ss_dssp HHHHHHHHTSCEECCCCC----------CCHHHHHHHHHHHHT--TTCCEEEECCEECC-------------------CT
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCHHHHHHHHHH--HHCCEEEEECCCCCCCCHHHHHCCCCCHHHHHHHH
T ss_conf 9999987297179605620137999999998595899999999--74999999538887651255606889999999999
Q ss_pred CC-CE-----EEEC------CCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCC
Q ss_conf 43-18-----9953------89987215870878884158299998183489999999808983
Q gi|254780505|r 161 PR-SV-----IAIK------DYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDA 212 (234)
Q Consensus 161 ~~-~~-----~~~~------~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~ 212 (234)
.. .+ ...+ ..+.|.+|||+|++.|+++++++++++|++|+++++.++.+...
T Consensus 186 ~~~avgd~~~~~~d~~G~~~~~~~~~~~itlt~~~l~~a~~vi~va~G~~K~~ai~~al~~~~~ 249 (264)
T 2r5f_A 186 ERGAVGDICLRYFDAQGKPVLEEDEEFVVSXGLGKLRSINRVLGLAGGVRKVQAIKGALLGGYL 249 (264)
T ss_dssp TTTCCEEETTEEECTTSCBC-------CEECCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTCC
T ss_pred HCCEEEEHHHHHHCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 8895786510220437899865441336316878946799689995680649999999936999
No 16
>>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str} (A:)
Probab=99.96 E-value=1.9e-28 Score=193.89 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=152.6
Q ss_pred EEEEE----CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 89994----89899999999999999999997289779998798646999987876307953238998132100356732
Q gi|254780505|r 5 KLYVA----ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 5 ~i~i~----~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
+++|+ ++.+++.+.+++..++.+.+.+ ++.+.|+++||+||..+|+.|.+.. .|.++.|+.+++++++..+++
T Consensus 28 ~~~V~~~~~~~~~~~~~~~~~~~a~~l~~~l--~~~~~igis~G~t~~~~~~~l~~~~-~~~~~~~~~~~g~~~~~~~~~ 104 (266)
T 3efb_A 28 DVVVVSGNDEDEETQLAXXGLHGAQLLDRLL--EPGDIVGFSWGRAVSALVENLPQAG-QSRQLICVPIIGGPSGKLESR 104 (266)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHHHHHHHHHC--CTTCEEEECCSHHHHHHHHTCCCCS-SCCCCEEEESBCBCTTSSCGG
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHCCCCC-CCCCCEEEECCCCCCCCCCCC
T ss_conf 7999679988716899999999999999867--8999999907788999999713225-788958998878887656675
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHH-----HHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE
Q ss_conf 027889997623567763214445887898999-----999999996315877648994478877143402786410022
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEA-----IRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA 155 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~ 155 (234)
+|+..+.+.|+++...+..+++.+....+.+.. +..+.+.++.. +++|++++|||+|||+||+||++......
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~e~~~~~~~~~~~~~~l~~~--~~~DiailGiG~~gh~~~~~p~~~~~~~~ 182 (266)
T 3efb_A 105 YHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIXQSQHFKTISAYW--DNLDIALVGIGSPAIRDGANWHAFYGGEE 182 (266)
T ss_dssp GCHHHHHHHHHHHTTCEECCCCSBSBCSSHHHHHHHHTSHHHHHHHHHH--HTCSEEEECCBCCC---------CSCHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHH--HCCCEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 5889999999998089611566642479999999998585999999987--44999999478787656422157889899
Q ss_pred CCCCCCC--------CEEEEC----CCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC
Q ss_conf 1566743--------189953----899872158708788841582999981834899999998089832
Q gi|254780505|r 156 LDTHTPR--------SVIAIK----DYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL 213 (234)
Q Consensus 156 ~~~~~~~--------~~~~~~----~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~ 213 (234)
....... .+...+ +.+.|.++||+|++.|++++++++++.|++|+++++.++.+....
T Consensus 183 ~~~~~~~~~vg~~~~~~~d~~g~~~~~~~~~r~iti~l~~l~~a~~vi~va~G~~K~~ai~~aL~~~~~~ 252 (266)
T 3efb_A 183 SDDLNARQVAGDICSRFFDIHGAXVETNXSEKTLSIEXNKLKQARYSIGIAXSEEKYSGIIGALRGKYIN 252 (266)
T ss_dssp HHHHHHTTCCEEETTEEECTTSCBCCCTTGGGBCBCCHHHHHTSSEEEEECCCSCSSCHHHHHHHTTSCS
T ss_pred HHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 9999974659999987734699996665545345368789646886899966816699999998269995
No 17
>>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114} (A:)
Probab=99.95 E-value=2.1e-28 Score=193.65 Aligned_cols=214 Identities=9% Similarity=0.015 Sum_probs=162.9
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 94898999999999999999999972897799987986469999878763079532389981321003567320278899
Q gi|254780505|r 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFIS 87 (234)
Q Consensus 8 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~ 87 (234)
.+++.+++.+.+++.+++.+.+.++ +..+|+|+||+||..+|+.|... |.+..+|+.|+|+++.++++||+..+.
T Consensus 30 ~~~~~~~~~~~la~~aa~~l~~~l~--~~~~igvs~G~T~~~~~~~l~~~---~~~~~~~v~~~g~~~~~~~~~~~~~i~ 104 (267)
T 3kv1_A 30 DQPNTNEQRKQVAALVSSYLNNNLQ--EGXAVAVGQGQNVAAVADHAGIV---TQRNARFVSAIGGTHRSGDIINADHIC 104 (267)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCC--TTCEEEECCSHHHHHHHHCCCCC---CCCCCEEEESBCBCC----CCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHCCCC---CCCCCEEEECCCCCCCCCCCCCHHHHH
T ss_conf 9999369999999999999997576--89889994788999999835766---778956994688767776756899999
Q ss_pred HHHHCCCCCCCCEEECCCCCCCHHHHHHHH-HHHHHHHC--CCCCCEEEECCCCCCCEEEECCCCCCCEEE---------
Q ss_conf 976235677632144458878989999999-99996315--877648994478877143402786410022---------
Q gi|254780505|r 88 KFFLQNKAQKASFIPLYYPQKTIEEAIRIA-NEKICQLI--HFPFDVVVLGMGIDGHTASFFPKGDTLSIA--------- 155 (234)
Q Consensus 88 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~--------- 155 (234)
+.|+++...+..+++.+....+.+.....+ +..++... ...+|++++|||.|||+||+||+.......
T Consensus 105 ~~la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diai~GiG~~~~~as~~~~~~~~~~~~~~~l~~~~ 184 (267)
T 3kv1_A 105 RRLAKKYGGSSETLYAPAYVNDPSLRSAFXEHATIKETLSQARKAEFALVGIGDXDENSHXVKLGFFTPKEFVEARLNDG 184 (267)
T ss_dssp HHHHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHHHTCSEEEEEEEEHHHHTHHHHTTSSCHHHHHHHHHTTC
T ss_pred HHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHCC
T ss_conf 99999829989998278227999999999758689999999986999999526888774045416898699999999789
Q ss_pred -CCCCCCCCEEEECCCC----CCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCC-----CCCCHHHHHHCCC
Q ss_conf -1566743189953899----87215870878884158299998183489999999808983-----2060899961899
Q gi|254780505|r 156 -LDTHTPRSVIAIKDYT----SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDA-----LEMPIRAILWNAQ 225 (234)
Q Consensus 156 -~~~~~~~~~~~~~~~~----~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~-----~~~Pas~ll~~~~ 225 (234)
........+...+... .+.+|||+|++.|++++++++++.|++|++++..++++... .+-+|+.|+++.+
T Consensus 185 av~~~~~~~~~d~~g~~~~~~~~~r~i~i~l~~l~~~~~vi~va~G~~Ka~ai~~aL~~~~~~~litD~~~A~~Ll~~~~ 264 (267)
T 3kv1_A 185 IVGDIGGFDFFKLDGTDADTLXRGRVIGLEXEDLRQIPNVVAXASESRKALSIXGALRTGVIDVLATSVSCAXALLNLAE 264 (267)
T ss_dssp EEEEETTTEEEETTSCBCCCGGGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTSCCSEEEEEHHHHHHHHHHHH
T ss_pred CEEEEECCEEECCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCHH
T ss_conf 57999334036589989556342542116879974799689996781669999999835999989979999999970020
Q ss_pred C
Q ss_conf 9
Q gi|254780505|r 226 S 226 (234)
Q Consensus 226 ~ 226 (234)
.
T Consensus 265 ~ 265 (267)
T 3kv1_A 265 N 265 (267)
T ss_dssp C
T ss_pred C
T ss_conf 4
No 18
>>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} (A:)
Probab=99.95 E-value=5.4e-29 Score=197.29 Aligned_cols=210 Identities=12% Similarity=0.132 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89899999999999999999997289779998798646999987876307953238998132100356732027889997
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKF 89 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ 89 (234)
++.++..+.+++..+..+.+.++ ++.+.|+++||+|+..+|+.+....++|++++||++|||+++..+.+||+...+..
T Consensus 118 ~~~~~~~~~la~~aa~~l~~~i~-~~~~~ig~sgG~T~~~l~~~l~~~~~~~~~v~vv~l~g~~~~~~~~~sn~~~~~~a 196 (345)
T 2o0m_A 118 DIQKKVLSDFGDVLTNTLNLLLP-NGENTIAVXGGTTXAXVAENXGSLETEKRHNLFVPARGGIGEAVSVQANSISAVXA 196 (345)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCC-SEEEEEEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 76369999999999999998633-59859999467999999997042367865179961566678887756889999998
Q ss_pred HH-CCCCCCCCEEECCCC--CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCC-----C
Q ss_conf 62-356776321444588--789899999999999631587764899447887714340278641002215667-----4
Q gi|254780505|r 90 FL-QNKAQKASFIPLYYP--QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHT-----P 161 (234)
Q Consensus 90 ll-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~-----~ 161 (234)
.+ +...... +.|.+.+ ..+...+...|.+.+.... .+|+++||||+|||+||+||+++.....+.... .
T Consensus 197 ~~~~~~~~~l-~~P~~~~~~~~~~~~~~~~~~~~l~~~~--~~DiallGIG~~gh~asl~~~~~~~~~~~~~~~avgdi~ 273 (345)
T 2o0m_A 197 NKTGGNYRAL-YVPEQLSRETYNSLLQEPSIQEVLTLIS--HANCVVHSIGRALHXAARRKXSDDEXVXLKQKNAVAESF 273 (345)
T ss_dssp HHHTCEECCC-CCCSSCCHHHHHHHHTCHHHHHHHHHHH--TCSEEEECCEEHHHHHHHTTCCHHHHHHHHHTTCCEEET
T ss_pred HHCCCCEEEE-CCCCCCCHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf 6518960444-1764347899999985858999999852--399999956887521026899989999999769899998
Q ss_pred CCEEEECCCCC-CCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC------CCCHHHHHHC
Q ss_conf 31899538998-72158708788841582999981834899999998089832------0608999618
Q gi|254780505|r 162 RSVIAIKDYTS-NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL------EMPIRAILWN 223 (234)
Q Consensus 162 ~~~~~~~~~~~-p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~------~~Pas~ll~~ 223 (234)
..++..+..+. +.+|||+|++.|++++++++++.|++|++|++.++.|+-.+ +-.|+.|+..
T Consensus 274 ~~~~d~~G~~~~~~r~Iti~l~~L~~~~~vi~ia~G~~K~~Ai~aal~g~~~nt~LitDe~tA~~LL~~ 342 (345)
T 2o0m_A 274 GYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYXKNAPKQTWLITDEAAANEILKG 342 (345)
T ss_dssp TEEECTTSCEEEECCCSBCCGGGGGGCSEEEEECCSGGGHHHHHHHHTTSCTTCEEEEEHHHHHHHTC-
T ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHH
T ss_conf 242047998468786036888998279968999668077999999996799983999699999999822
No 19
>>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} (A:)
Probab=99.94 E-value=1.6e-27 Score=188.30 Aligned_cols=213 Identities=9% Similarity=0.048 Sum_probs=157.2
Q ss_pred EEEEECC----HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 8999489----899999999999999999997289779998798646999987876307953238998132100356732
Q gi|254780505|r 5 KLYVAEN----KKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 5 ~i~i~~~----~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
+++|+++ .+++.+.+++..++.+.+.+ ++...|+++||+||..+|+.+... |++..+++++++.++.++++
T Consensus 24 ~~~V~~~~~~~~~~~~~~ia~~aa~~l~~~l--~~~~~igvs~G~T~~~~~~~l~~~---~~~~~i~~v~l~G~~~~~~~ 98 (255)
T 2okg_A 24 DAIIVSGDSDQSPWVKKEXGRAAVACXKKRF--SGKNIVAVTGGTTIEAVAEXXTPD---SKNRELLFVPARGGLGEDVK 98 (255)
T ss_dssp EEEEESSCTTTCTHHHHHHHHHHHHHHHHHC--CSEEEEEECCSHHHHHHHHHCCCC---TTCCEEEEEESEEECC---C
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHCCC---CCCCCEEEEECCCCCCCCCC
T ss_conf 8999679988766999999999999999866--799889995578999999972020---56887079965666788877
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCCEEEECCCCCCCEEECCC
Q ss_conf 0278899976235677632144458878989999999999963158--77648994478877143402786410022156
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH--FPFDVVVLGMGIDGHTASFFPKGDTLSIALDT 158 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~ 158 (234)
||+..+.+.|.++...+..+++.+....+..+..-.++..++.... ..+|++++|||+|||++|+||+++.....+..
T Consensus 99 ~~~~~~~~~la~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Diai~GiG~~gh~~~~~~~~~~~~~~~~~ 178 (255)
T 2okg_A 99 NQANTICAHXAEKASGTYRLLFVPGQLSQGAYSSIIEEPSVKEVLNTIKSASXLVHGIGEAKTXAQRRNTPLEDLKKIDD 178 (255)
T ss_dssp CHHHHHHHHHHHHHTCEECCCCCCCSCCHHHHHHHHTSHHHHHHHHHHHTCSEEEECCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCHHHHHHHHH
T ss_conf 59999999999984996020107866699999999868689999998437999999467776102148899899999886
Q ss_pred CC-----CCCEEEECCC-CCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCC-----CHHHHHH
Q ss_conf 67-----4318995389-987215870878884158299998183489999999808983206-----0899961
Q gi|254780505|r 159 HT-----PRSVIAIKDY-TSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEM-----PIRAILW 222 (234)
Q Consensus 159 ~~-----~~~~~~~~~~-~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~-----Pas~ll~ 222 (234)
.. ...++-.+.. ..+.+|||+|+..|++++++++++.|++|+++++.++++.....+ .|+.|+.
T Consensus 179 ~~a~gdi~~~~~~~~G~~~~~~~~i~i~l~~l~~~~~vi~va~G~~K~~ai~~aL~~~~~~~litD~~~A~~lL~ 253 (255)
T 2okg_A 179 NDAVTEAFGYYFNADGEVVHKVHSVGXQLDDIDAIPDIIAVAGGSSKAEAIEAYFKKPRNTVLVTDEGAAKKLLR 253 (255)
T ss_dssp TTEEEEETTEEEETTSCEEEECSEEECCGGGGGGCSEEEEECCSGGGHHHHHHHTTSCCCEEEEEEHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCCCCCCCCEECCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
T ss_conf 584999987575479987145511146778963589789996680769999999826999699978999999972
No 20
>>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis; HET: AMP GLN; 2.00A {Escherichia coli} (A:200-553)
Probab=92.28 E-value=0.29 Score=27.23 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89899999999999999999997289779998798646999987876
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI 56 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~ 56 (234)
+|.++..+.+-+.+.+.++..+.......++||||---..+...+.+
T Consensus 3 ~~~~~~~~~~~~~l~~av~~~l~~~~~v~v~lSGG~DS~~i~~ll~~ 49 (354)
T 1ct9_A 3 KDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKK 49 (354)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEECCCCCCEECCCCCCHHHHHHHHHH
T ss_conf 11056789999998753011132476531110588747899999998
No 21
>>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosylation; HET: MSE M1P; 1.75A {Homo sapiens} (A:1-97,A:203-262)
Probab=71.49 E-value=6.9 Score=18.84 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 8977999879864699998787
Q gi|254780505|r 34 KGTASIALSGGLTPRFFLEELS 55 (234)
Q Consensus 34 ~~~~~i~lsGGstp~~~y~~L~ 55 (234)
+..+.++++||+....+.+.|.
T Consensus 43 ~~gv~v~ivTGR~~~ki~e~L~ 64 (157)
T 2fue_A 43 RSRVQIGVVGGSDYCKIAEQLG 64 (157)
T ss_dssp TTTSEEEEECSSCHHHHHHHHS
T ss_pred HCCCCEEEEECCCCCCCCCHHH
T ss_conf 7199799994899623753100
No 22
>>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* (A:119-282)
Probab=71.02 E-value=6.6 Score=18.96 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 99999999999997289779998798646
Q gi|254780505|r 19 LAKKVAEQLSIGITNKGTASIALSGGLTP 47 (234)
Q Consensus 19 ~a~~i~~~i~~~i~~~~~~~i~lsGGstp 47 (234)
+++.+.+.++.+++..+.-.|+++||-..
T Consensus 110 l~~~l~~~~~~~~~~~~~~~l~lsGGVa~ 138 (164)
T 2ivn_A 110 AFAALVEVTERAVAHTEKDEVVLVGGVAA 138 (164)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEESGGGG
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf 89999999998654035553254155789
No 23
>>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} (A:214-513)
Probab=70.44 E-value=7.3 Score=18.70 Aligned_cols=126 Identities=10% Similarity=0.040 Sum_probs=68.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 48989999999999999999999728977999879864699998787630795323899813210035673202788999
Q gi|254780505|r 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISK 88 (234)
Q Consensus 9 ~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~ 88 (234)
..+.++..+.+-+.+.+.++..+...+...+.||||---..+.-.+.+.. .+++.|..|-. ..++..+...+-+
T Consensus 3 ~~~~e~~~e~l~~~l~~av~~~l~~~~~v~v~lSGGlDSs~ia~ll~~~~---~~~~~~t~~~~---~~~e~~~a~~va~ 76 (300)
T 1jgt_A 3 ILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA---GELDTVSMGTD---TSNEFREARAVVD 76 (300)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH---SSCEEEEEECS---SCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCC---CCCCEEECCCC---CCCHHHHHHHHHH
T ss_conf 79989999999999999999984568886697479853399999876303---44323522444---5764778999987
Q ss_pred HHHCCCCCCCCEEECCC--------------CCCCHHHHHH-HHHHHHHHHCCCCCCEEEECCCCCCCEEE
Q ss_conf 76235677632144458--------------8789899999-99999963158776489944788771434
Q gi|254780505|r 89 FFLQNKAQKASFIPLYY--------------PQKTIEEAIR-IANEKICQLIHFPFDVVVLGMGIDGHTAS 144 (234)
Q Consensus 89 ~ll~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~Dl~lLGiG~DGH~AS 144 (234)
.+- .+...+.... ....+..... ............+.++++-|.|.|-.++.
T Consensus 77 ~lg----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~il~G~g~de~~~~ 143 (300)
T 1jgt_A 77 HLR----TRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRALDGPERRILTGYGADIPLGG 143 (300)
T ss_dssp HHT----CEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCSSCCEEECCTTTHHHHTT
T ss_pred HHH----CCEEEEECCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHCC
T ss_conf 741----2507997399999999999999873311103553340777766530552299986360453079
No 24
>>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:126-286)
Probab=69.52 E-value=7.4 Score=18.64 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=6.6
Q ss_pred EEECCCCCHHHHHHHHH
Q ss_conf 99879864699998787
Q gi|254780505|r 39 IALSGGLTPRFFLEELS 55 (234)
Q Consensus 39 i~lsGGstp~~~y~~L~ 55 (234)
++++--+++-.+++.++
T Consensus 26 m~~~~~~s~G~~~D~va 42 (161)
T 3en9_A 26 FGETLDIAVGNCLDQFA 42 (161)
T ss_dssp EEEBSSSCHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 50457646556787644
No 25
>>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} (A:)
Probab=68.09 E-value=8.1 Score=18.39 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=11.8
Q ss_pred CEEECCCCCCCHHHHHHHHH
Q ss_conf 21444588789899999999
Q gi|254780505|r 99 SFIPLYYPQKTIEEAIRIAN 118 (234)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~ 118 (234)
-++-++..-.+.+|....+.
T Consensus 100 ~~I~lpGG~GTleEl~e~~~ 119 (191)
T 1t35_A 100 GFISXPGGFGTYEELFEVLC 119 (191)
T ss_dssp EEEECSCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 37996676204999999999
No 26
>>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} (A:)
Probab=64.79 E-value=9.5 Score=18.00 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=13.8
Q ss_pred CEEECCCCCCCHHHHHHHHHH
Q ss_conf 214445887898999999999
Q gi|254780505|r 99 SFIPLYYPQKTIEEAIRIANE 119 (234)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ 119 (234)
-++-++....+.+|....+..
T Consensus 108 a~I~lpGG~GTl~El~~~lt~ 128 (216)
T 1ydh_A 108 AFIALPGGYGTXEELLEXITW 128 (216)
T ss_dssp EEEECSCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
T ss_conf 789927850589999999999
No 27
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:326-467)
Probab=64.46 E-value=9.6 Score=17.96 Aligned_cols=47 Identities=17% Similarity=0.019 Sum_probs=31.8
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHH--HCCCCCCEEEEECCCCC
Q ss_conf 999997289779998798646999987876--30795323899813210
Q gi|254780505|r 27 LSIGITNKGTASIALSGGLTPRFFLEELSI--INVDWHKVVVTLVDERF 73 (234)
Q Consensus 27 i~~~i~~~~~~~i~lsGGstp~~~y~~L~~--~~~~w~kv~~~~~DER~ 73 (234)
+.+.+++...-.|++-.|+.-..+.+.... ....-.++.+.+.|||+
T Consensus 50 l~~li~~~~~~~iViG~g~~~~~~~~~~~~~~~l~~~~~i~V~~vDE~~ 98 (142)
T 3bzc_A 50 LAALCAKHQVELIAIGNGTASRETDKLAGELIKKYPGMKLTKIMVSEAG 98 (142)
T ss_dssp HHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHHHCGGGCCEEEEECCHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf 9999998199289988981358999999999986767886289933324
No 28
>>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCSG, PSI-2, midwest center for structural genomics; 2.00A {Thermoplasma acidophilum} (A:)
Probab=59.18 E-value=12 Score=17.38 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=44.2
Q ss_pred CEEEE-ECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE----ECCC
Q ss_conf 23899-813210035673202788999762356776321444588789899999999999631587764899----4478
Q gi|254780505|r 63 KVVVT-LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVV----LGMG 137 (234)
Q Consensus 63 kv~~~-~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~l----LGiG 137 (234)
|+-++ -+|| +++-.-.++|..++++.|-+...........+ .+.++-.+...+.... .|+++ +|.|
T Consensus 5 rv~ii~~GdE-l~~G~~~D~n~~~l~~~l~~~G~~v~~~~~v~---D~~~~i~~~l~~~~~~-----~DliittGG~g~~ 75 (172)
T 3kbq_A 5 NASVITVGNE-ILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVM---DDLDEIGWAFRVALEV-----SDLVVSSGGLGPT 75 (172)
T ss_dssp EEEEEEECHH-HHTTSSCCHHHHHHHHHHHHTTCEEEEEEEEC---SCHHHHHHHHHHHHHH-----CSEEEEESCCSSS
T ss_pred CEEEEEECCC-CCCCEEEEHHHHHHHHHHHHCCCCEEEEEEEC---CCHHHHHHHHHHHHHC-----CCEEEECCCCCCC
T ss_conf 6899997511-51770466199999999998799177999989---8499999999998734-----8899981788678
Q ss_pred CCCCEE
Q ss_conf 877143
Q gi|254780505|r 138 IDGHTA 143 (234)
Q Consensus 138 ~DGH~A 143 (234)
+|-++-
T Consensus 76 ~~D~t~ 81 (172)
T 3kbq_A 76 FDDMTV 81 (172)
T ss_dssp TTCCHH
T ss_pred CCCHHH
T ss_conf 754099
No 29
>>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} (A:1-271)
Probab=58.41 E-value=12 Score=17.30 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=37.9
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEE
Q ss_conf 289994898999999999999999999972897799987986------------------46999987876307953238
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVV 65 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~ 65 (234)
.-+++.++.|. |..+...++......+.-..++.||. ||..+...+....+.++++.
T Consensus 131 ~~lil~PTreL-----a~Qi~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~IiV~TP~rl~~~~~~~~~~l~~~~ 205 (271)
T 2db3_A 131 QVVIVSPTREL-----AIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTR 205 (271)
T ss_dssp SEEEECSSHHH-----HHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCC
T ss_pred EEEEECCCHHH-----HHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 59999066787-----5333320012343321122012378762445666424775699678644332111332225554
Q ss_pred EEECCC
Q ss_conf 998132
Q gi|254780505|r 66 VTLVDE 71 (234)
Q Consensus 66 ~~~~DE 71 (234)
++-+||
T Consensus 206 ~lVlDE 211 (271)
T 2db3_A 206 FVVLDE 211 (271)
T ss_dssp EEEEET
T ss_pred EEEEEC
T ss_conf 999989
No 30
>>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} (A:)
Probab=54.82 E-value=14 Score=16.93 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 9999999997289779998798646999987876307953238998132100
Q gi|254780505|r 23 VAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFV 74 (234)
Q Consensus 23 i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V 74 (234)
-+..++.++...+...+++|||.--..+...|.+..-...++.+++.|..+-
T Consensus 30 ~~~~i~~~~~~~~~v~v~~SGGkDS~vll~ll~~~~~~~~~i~~~~~d~g~~ 81 (261)
T 2oq2_A 30 PQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHH 81 (261)
T ss_dssp HHHHHHHHHHHCSSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCB
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 9999999999789947998577899999999998375578886799718987
No 31
>>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} (A:127-287)
Probab=52.76 E-value=15 Score=16.73 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999999972897799987986
Q gi|254780505|r 20 AKKVAEQLSIGITNKGTASIALSGGL 45 (234)
Q Consensus 20 a~~i~~~i~~~i~~~~~~~i~lsGGs 45 (234)
++.+.+.++...++.+.-.++|+||-
T Consensus 108 ~~~l~~~~~~~~~~~~~~~l~l~GGV 133 (161)
T 3eno_A 108 FAMLVEVLERALYVSGKDEILMAGGV 133 (161)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSG
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCH
T ss_conf 99999999999987077621213627
No 32
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=50.27 E-value=17 Score=16.49 Aligned_cols=116 Identities=19% Similarity=0.143 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH--------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 99999999999999999997289779998798646--------9999878763079532389981321003567320278
Q gi|254780505|r 13 KRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTP--------RFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQS 84 (234)
Q Consensus 13 ~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp--------~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~ 84 (234)
.+.+..+++++ -++|.-.|++=+|..- .++.+.+.+..++.......... .+.+....
T Consensus 3 ~~~~~~a~~~L--------~~~G~~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~ 68 (133)
T 2rgy_A 3 RRGGELAAATL--------IEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESD------FSPEGGYA 68 (133)
T ss_dssp HHHHHHHHHHH--------HHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECC------SSHHHHHH
T ss_pred CCCCHHHHHHH--------HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC------CCHHHHHH
T ss_conf 21100024567--------65300110002467554431111213678998728864312122345------67888999
Q ss_pred HHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCC
Q ss_conf 8999762356776321444588789899999999999631587764899447887714340278
Q gi|254780505|r 85 FISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPK 148 (234)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~ 148 (234)
.+++.+.. .+.+.-.+ . .+...+...+....+.....|=|+.++|++.+.......|.
T Consensus 69 ~~~~~l~~-~~~~~ai~-~----~~d~~a~~~~~~l~~~g~~vP~di~ivgfd~~~~~~~~~p~ 126 (133)
T 2rgy_A 69 ATCQLLES-KAPFTGLF-C----ANDTXAVSALARFQQLGISVPGDVSVIGYDDDYSAAYAAPA 126 (133)
T ss_dssp HHHHHHHH-TCCCSEEE-E----SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTSTTSSSC
T ss_pred HHHHHHCC-CCCCCCCC-C----CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 98653013-56875343-4----68367665567776504557852102214681879846899
No 33
>>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} (A:138-182,A:263-352)
Probab=48.63 E-value=18 Score=16.33 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=23.4
Q ss_pred EEEECCCCCH-HHHHHHHHH----HCCCCCCEEEEECCCC
Q ss_conf 9998798646-999987876----3079532389981321
Q gi|254780505|r 38 SIALSGGLTP-RFFLEELSI----INVDWHKVVVTLVDER 72 (234)
Q Consensus 38 ~i~lsGGstp-~~~y~~L~~----~~~~w~kv~~~~~DER 72 (234)
+|+|+||+|- .+|.++|.+ ..-...++++.--+||
T Consensus 79 nIvLtGG~s~~~Gf~eRL~~El~~~~p~~~~v~V~~~~~r 118 (135)
T 2fxu_A 79 NNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 118 (135)
T ss_dssp CEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTT
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 7798346122726899999999965899832899548977
No 34
>>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} (A:)
Probab=48.22 E-value=18 Score=16.29 Aligned_cols=55 Identities=15% Similarity=-0.004 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEECCCCC
Q ss_conf 9999999999999728977999879864699998787630-795323899813210
Q gi|254780505|r 19 LAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN-VDWHKVVVTLVDERF 73 (234)
Q Consensus 19 ~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~-~~w~kv~~~~~DER~ 73 (234)
.....++.++..+...+...+++|||.--..++..|.... --.-.+.+.++|..+
T Consensus 31 ~~~~~~~~i~~~~~~~~~v~va~SGGkDS~~lL~ll~~l~~~~~~~i~~~~~d~g~ 86 (325)
T 1zun_A 31 LEAESIHIIREVAAEFDNPVXLYSIGKDSAVXLHLARKAFFPGKLPFPVXHVDTRW 86 (325)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99999999999999669879996676899999999999876408985699966888
No 35
>>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} (A:1-115,A:268-282)
Probab=46.00 E-value=19 Score=16.08 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=20.3
Q ss_pred CCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEEC
Q ss_conf 27864100221566743189953899872158708
Q gi|254780505|r 146 FPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMT 180 (234)
Q Consensus 146 FP~~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt 180 (234)
-||...+.+..+....+..+.+.+..-|.||||+.
T Consensus 81 kPG~~~l~V~~~~~~r~~~v~V~~k~Yp~QrItL~ 115 (130)
T 2hsi_A 81 KPGPQKLEVRAATGNHEERFSVGSKHYREQRITLK 115 (130)
T ss_dssp CSEEEEEEEECTTCCEEEEEEECCC----------
T ss_pred CCCCEEEEEECCCCEEEEEEEECCCCCCEEEEECC
T ss_conf 88645899984897288889873367743787447
No 36
>>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} (A:148-346)
Probab=45.56 E-value=20 Score=16.04 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=5.0
Q ss_pred CEEEEECCCCC
Q ss_conf 77999879864
Q gi|254780505|r 36 TASIALSGGLT 46 (234)
Q Consensus 36 ~~~i~lsGGst 46 (234)
.+.++++||.|
T Consensus 29 ~~il~~~G~gt 39 (199)
T 2i7n_A 29 PMLLVNMGSGV 39 (199)
T ss_dssp SEEEEEESSSE
T ss_pred CEEEEECCCCE
T ss_conf 66999837976
No 37
>>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} (A:285-435,A:495-515)
Probab=44.96 E-value=20 Score=15.98 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=14.3
Q ss_pred EEECHHHHHC------CCEEEEEEECHHHHHHHHHHH
Q ss_conf 8708788841------582999981834899999998
Q gi|254780505|r 177 MTMTFSALHD------AQFLALHIEGTQKKHVLEKAI 207 (234)
Q Consensus 177 ITlt~~~l~~------a~~i~ll~~G~~K~~al~~~l 207 (234)
|.+.++.+.+ ...--+.++|-.-.+++.++.
T Consensus 123 ia~~~r~~~e~l~~~g~~~~~I~~~GGgs~~~~~~~~ 159 (172)
T 3i8b_A 123 LLCSQRDCLELIRSLGASITRILLIGGGATEAVYEAY 159 (172)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEESGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCHHCHHHHHHH
T ss_conf 9999999999999709797879998951298999999
No 38
>>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} (A:)
Probab=44.92 E-value=20 Score=15.98 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=14.9
Q ss_pred CEEECCCCCCCHHHHHHHHHHH
Q ss_conf 2144458878989999999999
Q gi|254780505|r 99 SFIPLYYPQKTIEEAIRIANEK 120 (234)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~ 120 (234)
-++-++....+.+|....+...
T Consensus 112 a~I~lpGG~GTl~Ei~~~~~~~ 133 (215)
T 2a33_A 112 AFIALPGGYGTLEELLEVITWA 133 (215)
T ss_dssp EEEECSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHH
T ss_conf 3668266324689999999999
No 39
>>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:96-238)
Probab=42.56 E-value=22 Score=15.75 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCH
Q ss_conf 989999999999999999999728-9779998798646
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNK-GTASIALSGGLTP 47 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~-~~~~i~lsGGstp 47 (234)
+.++++..+.+.+++.+.+.+++- +.-.|+++||-..
T Consensus 88 ~~~dia~~~~~~~a~~i~~~~~~~~~~~~vvl~GGv~~ 125 (143)
T 1hux_A 88 DKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQ 125 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEESGGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 68999999999999999998764177652798566000
No 40
>>1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} (T:190-419)
Probab=41.93 E-value=13 Score=17.08 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 9899999999999999999997289-----------779998798646999987876307953238998132
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKG-----------TASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDE 71 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~-----------~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DE 71 (234)
..+++.....+.+.+.+++.+++-+ ...|+|.||+|-.+-.+.+.+.-+..+--.-.+-||
T Consensus 104 ~~~e~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~i~~ivL~GG~srip~i~e~~~~~fg~~~~~~~~p~~ 175 (230)
T 1e4f_T 104 KLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANS 175 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEECCHHCCHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 999999999999999999999997465656333445763999882104200999999997898089367433
No 41
>>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like hydrolase; 2.45A {Bacillus subtilis subsp} (A:1-121,A:210-289)
Probab=41.62 E-value=23 Score=15.66 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEE
Q ss_conf 9999999999972897799987986469999878763079-5323899
Q gi|254780505|r 21 KKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVD-WHKVVVT 67 (234)
Q Consensus 21 ~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~-w~kv~~~ 67 (234)
+.+...+++ ..+++...+++++|++...+++.|.+..++ +..+.+.
T Consensus 47 ~~L~~~l~~-~~~~~~i~~~~~TGr~l~s~~~~l~~~~~p~~Pd~ii~ 93 (201)
T 3gyg_A 47 YELEDYLEQ-KSKDGELIIGWVTGSSIESILDKXGRGKFRYFPHFIAS 93 (201)
T ss_dssp HHHHHHHHH-HHHTTCEEEEEECSSCHHHHHHHHHHTTCCBCCSEEEE
T ss_pred HHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 999999999-98716964998506755779999998388767733650
No 42
>>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} (A:274-519)
Probab=40.67 E-value=24 Score=15.57 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHHH
Q ss_conf 89899999999999999999997289779998798--64699
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGG--LTPRF 49 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGG--stp~~ 49 (234)
+..++..+.++..+.+..+. .....+.++|||| ||...
T Consensus 8 ~~~e~i~~~~~~~l~~~~~~--~g~~~vvvglSGGVDSsv~a 47 (246)
T 3ilv_A 8 EKEFEFWEATSLGLFDYXRK--SRSKGFVLSLSGGADSSACA 47 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--TTCCSEEEECCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHH
T ss_conf 45889886554323444320--25567567774335676999
No 43
>>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} (A:)
Probab=39.09 E-value=25 Score=15.42 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=49.3
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89994898999999999999999999972897799987986------------------469999878763079532389
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVV 66 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~ 66 (234)
.+.+.+++|- +..+++.+.......-........+..||. ||-.+++.+.+..++.+++.+
T Consensus 75 ~~~~~PTreL-~~Qi~~~~~~l~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~iiv~Tpgrl~~~~~~~~~~l~~i~~ 153 (219)
T 1q0u_A 75 AVITAPTREL-ATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp EEEECSSHHH-HHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred CCCCCCCHHH-HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEE
T ss_conf 5322574999-998887663320012334201025655671439999973799988996873789998727754465327
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 98132100356732027889997623567763214445
Q gi|254780505|r 67 TLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY 104 (234)
Q Consensus 67 ~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~ 104 (234)
+-+||- +.--..++...+.+. +...+... +.-++
T Consensus 154 lVlDEa--D~ll~~~~~~~i~~i-~~~~p~~~-Q~~lf 187 (219)
T 1q0u_A 154 LVVDEA--DLXLDXGFITDVDQI-AARXPKDL-QXLVF 187 (219)
T ss_dssp EEECSH--HHHHHTTCHHHHHHH-HHTSCTTC-EEEEE
T ss_pred EEEECH--HHHHCCCCHHHHHHH-HHHCCCCC-EEEEE
T ss_conf 998647--777435739999999-99789888-79999
No 44
>>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:23-266)
Probab=38.93 E-value=20 Score=16.00 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 8989999999999999999999728977999879864
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLT 46 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGst 46 (234)
+-+++-+..+++.+.+.++++ ..+....+.+|||.|
T Consensus 77 P~Pd~~s~~Aa~~il~~~~~~-~~~dlvl~LiSGGgS 112 (244)
T 1x3l_A 77 PIPDEKSILGAKEALSILNRA-RENDIVFILISGGGS 112 (244)
T ss_dssp SSCCHHHHHHHHHHHHHHHHC-CTTSEEEEEECTTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCC
T ss_conf 989877899999999999708-987748999847863
No 45
>>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} (A:)
Probab=38.65 E-value=25 Score=15.38 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=37.5
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89994898999999999999999999972897799987986------------------469999878763079532389
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVV 66 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~ 66 (234)
-+++.+++| +|..+.+.+.......+.. ..+.||. ||-.+.+.+.+..++.+++.+
T Consensus 97 ~lIl~PTrE-----La~Qi~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivv~Tpgrl~~~~~~~~~~l~~l~~ 170 (228)
T 3iuy_A 97 MLVLTPTRE-----LALHVEAECSKYSYKGLKS-ICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp EEEECSSHH-----HHHHHHHHHHHHCCTTCCE-EEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred EEEEECCHH-----HHHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCCCEE
T ss_conf 999805324-----6899999999864599879-9998998879999986289999997964554346667512676249
Q ss_pred EECCC
Q ss_conf 98132
Q gi|254780505|r 67 TLVDE 71 (234)
Q Consensus 67 ~~~DE 71 (234)
+-+||
T Consensus 171 lVlDE 175 (228)
T 3iuy_A 171 LVIDE 175 (228)
T ss_dssp EEECC
T ss_pred EEECC
T ss_conf 98514
No 46
>>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Dugesia japonica} (A:)
Probab=38.52 E-value=25 Score=15.36 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=40.9
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89994898999999999999999999972897799987986------------------469999878763079532389
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVV 66 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~ 66 (234)
-+++.+++| +|..+...+.......+....++.||. ||..+.+.+....++.+++.+
T Consensus 103 alvl~PTrE-----La~Qi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~Tpgrl~~~~~~~~~~l~~ik~ 177 (253)
T 1wrb_A 103 CLILAPTRE-----LAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 177 (253)
T ss_dssp EEEECSSHH-----HHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred EEEECCCHH-----HHCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCCE
T ss_conf 999546155-----301012211000257884699983451004676640268744772679987766168166355405
Q ss_pred EECCCC
Q ss_conf 981321
Q gi|254780505|r 67 TLVDER 72 (234)
Q Consensus 67 ~~~DER 72 (234)
+-+||-
T Consensus 178 lVlDEa 183 (253)
T 1wrb_A 178 IVLDEA 183 (253)
T ss_dssp EEEETH
T ss_pred EEEEEH
T ss_conf 888733
No 47
>>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens} (A:)
Probab=35.99 E-value=28 Score=15.12 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=40.8
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89994898999999999999999999972897799987986------------------469999878763079532389
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVV 66 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~ 66 (234)
-+...+++|. |..+.+.++......+.....+.||. ||-.+.+.+.+..+..+++.+
T Consensus 105 ~iil~PTREL-----a~Qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~iiV~TPgrl~~~~~~~~~~l~~l~~ 179 (242)
T 3fe2_A 105 CLVLAPTREL-----AQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 179 (242)
T ss_dssp EEEECSSHHH-----HHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCE
T ss_pred EEEECCCHHH-----HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCEE
T ss_conf 9996598999-----99799999997334775899970898879999997279999998982068787238340344639
Q ss_pred EECCC
Q ss_conf 98132
Q gi|254780505|r 67 TLVDE 71 (234)
Q Consensus 67 ~~~DE 71 (234)
+-+||
T Consensus 180 lVlDE 184 (242)
T 3fe2_A 180 LVLDE 184 (242)
T ss_dssp EEETT
T ss_pred EEEEH
T ss_conf 99851
No 48
>>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase, hexxgh-motif, aminopeptidase, cytoplasm, hydrolase, metal-binding; 1.95A {Saccharomyces cerevisiae} (A:172-259)
Probab=33.86 E-value=9.4 Score=18.00 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.3
Q ss_pred ECCCCCCCEEEECCCCC
Q ss_conf 44788771434027864
Q gi|254780505|r 134 LGMGIDGHTASFFPKGD 150 (234)
Q Consensus 134 LGiG~DGH~ASlFP~~~ 150 (234)
||.+++||+-+-|||++
T Consensus 1 LG~~~~G~~TtYY~~~~ 17 (88)
T 3csk_A 1 LGFPSQGYTSAYYLGLP 17 (88)
T ss_dssp BSCGGGTCBCTTEEESC
T ss_pred CCCCCCCCEEECCCCCC
T ss_conf 48988784342558999
No 49
>>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} (A:)
Probab=33.10 E-value=11 Score=17.55 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 89779998798646999987876307
Q gi|254780505|r 34 KGTASIALSGGLTPRFFLEELSIINV 59 (234)
Q Consensus 34 ~~~~~i~lsGGstp~~~y~~L~~~~~ 59 (234)
++.-.|+|-+|+|...+.+.|.++..
T Consensus 25 ~~g~~I~lgsGST~~~l~~~L~~~~~ 50 (224)
T 3kwm_A 25 TTEITLGVGTGSTVGFLIEELVNYRD 50 (224)
T ss_dssp CSSEEEEECCSHHHHHHHHHGGGCTT
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 89999983777999999999996056
No 50
>>3h1q_A Ethanolamine utilization protein EUTJ; structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-2901} (A:138-256)
Probab=32.61 E-value=32 Score=14.78 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHHHH
Q ss_conf 99999999999999999728977-99987986469999878763
Q gi|254780505|r 15 LAQKLAKKVAEQLSIGITNKGTA-SIALSGGLTPRFFLEELSII 57 (234)
Q Consensus 15 l~~~~a~~i~~~i~~~i~~~~~~-~i~lsGGstp~~~y~~L~~~ 57 (234)
......+.+...+++.++..... .|.|+||++-.+-.+.+.+.
T Consensus 68 ~~~~~~~~~~~~v~~~l~~~~~i~~IvL~GG~s~ipgl~~~l~~ 111 (119)
T 3h1q_A 68 VVRPVIEKXALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSR 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCSSCCEEEESGGGGSTTHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 21166777899999999617998879998980530129999999
No 51
>>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} (A:1-211)
Probab=31.87 E-value=33 Score=14.71 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=61.9
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----------------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 289994898999999999999999999972897799987986-----------------469999878763079532389
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL-----------------TPRFFLEELSIINVDWHKVVV 66 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs-----------------tp~~~y~~L~~~~~~w~kv~~ 66 (234)
..+.+.+++|. +..+...+......-+.-..++.||. ||-.+.+.+.+..++.+++.+
T Consensus 76 ~~~ii~PtreL-----~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~iiv~TPgrl~~~~~~~~~~l~~i~~ 150 (211)
T 1hv8_A 76 EAIILTPTREL-----AIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKY 150 (211)
T ss_dssp CEEEECSCHHH-----HHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCE
T ss_pred EEEEECCHHHH-----HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCEEEEE
T ss_conf 69996747999-----8876666654202332121111377412223322045637995379988899847733106626
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 9813210035673202788999762356776321444588789899999999999631587764899447887
Q gi|254780505|r 67 TLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGID 139 (234)
Q Consensus 67 ~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~D 139 (234)
+-+||- +.--...+...+.+. ++..+.. .+.-++ .+.-+. ......+.+ .+ |-+.+-++.|
T Consensus 151 lVlDEa--D~ll~~~f~~~i~~i-~~~l~~~-~Q~~lf-SAT~~~-~v~~~~~~~---l~---~p~~I~v~~~ 211 (211)
T 1hv8_A 151 FILDEA--DEXLNXGFIKDVEKI-LNACNKD-KRILLF-SATXPR-EILNLAKKY---XG---DYSFIKAKIN 211 (211)
T ss_dssp EEEETH--HHHHTTTTHHHHHHH-HHTSCSS-CEEEEE-CSSCCH-HHHHHHHHH---CC---SEEEEECCSS
T ss_pred EECCHH--HHHHCCCCCCCHHCC-CCCCCCC-CEEEEE-ECCCCC-HHHHHHHHH---CC---CCEEEEECCC
T ss_conf 731024--321001000101000-0246765-100354-124550-145666552---47---9669861166
No 52
>>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:35-261)
Probab=30.85 E-value=18 Score=16.33 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=11.1
Q ss_pred EEEECCCCCHHHHHHHHHH
Q ss_conf 9998798646999987876
Q gi|254780505|r 38 SIALSGGLTPRFFLEELSI 56 (234)
Q Consensus 38 ~i~lsGGstp~~~y~~L~~ 56 (234)
.++++-|.--..|.+++.+
T Consensus 18 v~vva~GKAa~~MA~a~~~ 36 (227)
T 2b8n_A 18 VILVAVGKAAWRXAKAAYE 36 (227)
T ss_dssp EEEEEESTTHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHH
T ss_conf 8999983899999999999
No 53
>>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein structure initiative; HET: COA; 2.40A {Shewanella oneidensis mr-1} (A:1-181)
Probab=30.56 E-value=34 Score=14.57 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=29.3
Q ss_pred CCCEEEEECCC-CCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 89779998798-6469999878763079532389981
Q gi|254780505|r 34 KGTASIALSGG-LTPRFFLEELSIINVDWHKVVVTLV 69 (234)
Q Consensus 34 ~~~~~i~lsGG-stp~~~y~~L~~~~~~w~kv~~~~~ 69 (234)
+.-..|+++|+ +.|..+.++|.+..-...+++++..
T Consensus 17 ~~G~~I~~gg~~~~P~~l~~aL~~~~~~~~~l~i~~~ 53 (181)
T 2oas_A 17 RSGETLWTHSXGATPKVLLDALAKHALTLDNITLLQL 53 (181)
T ss_dssp CTTCEEEECCBTTCCHHHHHHHHHHGGGCCSEEEEES
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9979999789866879999999974750698699995
No 54
>>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} (A:1-192)
Probab=30.07 E-value=35 Score=14.52 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-----------------CHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 99999999999972897799987986-----------------469999878763079532389981321
Q gi|254780505|r 20 AKKVAEQLSIGITNKGTASIALSGGL-----------------TPRFFLEELSIINVDWHKVVVTLVDER 72 (234)
Q Consensus 20 a~~i~~~i~~~i~~~~~~~i~lsGGs-----------------tp~~~y~~L~~~~~~w~kv~~~~~DER 72 (234)
+..+...+.......+....+..||. ||..+...+.+..+.++++..+-+||=
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~l~~i~~lViDEa 138 (192)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEA 138 (192)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESH
T ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 2101565543111353110002466767999986059999998979999888618602355179999734
No 55
>>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei 1710B} (A:23-169)
Probab=29.05 E-value=36 Score=14.41 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC--CHH-HHHHHH-HHHCCCCCCEEEEECCC
Q ss_conf 98999999999999999999972897799987986--469-999878-76307953238998132
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL--TPR-FFLEEL-SIINVDWHKVVVTLVDE 71 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs--tp~-~~y~~L-~~~~~~w~kv~~~~~DE 71 (234)
|.++..+...+.+.+.+.. .....+.++||||- +-. .+...+ .+.....-++.+...+.
T Consensus 3 ~~e~~~~~~~~~i~~~~~~--~~~~~vvv~lSGG~DSsv~a~l~~~~~~~~~~~~~~~~~~~~~~ 65 (147)
T 3dpi_A 3 DARDEAERRIGFVADYLRT--AGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRL 65 (147)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHH--HCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9999999999999999998--19995899688888899999999998776346776647999836
No 56
>>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} (A:1-127,A:202-219)
Probab=28.56 E-value=21 Score=15.82 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 899999999999999999997289779998798646999987876307953238998132
Q gi|254780505|r 12 KKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDE 71 (234)
Q Consensus 12 ~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DE 71 (234)
++.++++++++| ++.-.|.|-+|+|...+.+.|...+. ..+++...-+
T Consensus 7 K~~IA~~Aa~~I----------~~gd~I~ld~GST~~~l~~~L~~~~~--~~it~vtgg~ 54 (145)
T 1o8b_A 7 KKAVGWAALQYV----------QPGTIVGVGTGSTAAHFIDALGTXKG--QIEGAVSSSD 54 (145)
T ss_dssp --------------------------CEEECCSCC-----------------CCEEESCC
T ss_pred HHHHHHHHHHHC----------CCCCEEEECCHHHHHHHHHHHHHHHC--CCEEEEECCH
T ss_conf 999999999747----------99999996856999999999976317--8618874858
No 57
>>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} (A:)
Probab=28.24 E-value=37 Score=14.37 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=14.8
Q ss_pred HCCCCCCEEEECCCCCCCE
Q ss_conf 1587764899447887714
Q gi|254780505|r 124 LIHFPFDVVVLGMGIDGHT 142 (234)
Q Consensus 124 ~~~~~~Dl~lLGiG~DGH~ 142 (234)
+..+++|++++|.|..+.+
T Consensus 57 ~l~~~peiliiGtG~~~~~ 75 (122)
T 2ab1_A 57 VVEKGVQTLVIGRGXSEAL 75 (122)
T ss_dssp HHTTCCSEEEEEECSSCCS
T ss_pred HHCCCCCEEEECCCCCCCC
T ss_conf 8536999999928987554
No 58
>>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} (A:)
Probab=26.60 E-value=40 Score=14.14 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 89899999999999999999-99728977999879864699998787630795323899813210035673
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSI-GITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENL 79 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~ 79 (234)
++.++..++..+.+.+.++. .|+...-.++.+|--.--...|-+.+.+...|..|-++-.-|=-||-.=+
T Consensus 44 Nt~e~I~~At~ELl~eii~~N~l~~edIvSv~FTvT~DL~A~FPA~aaR~~Gw~~VPLlc~qEm~V~gsLp 114 (148)
T 1xho_A 44 NTADEIVAETQKLLKEXAEKNGLEEDDIISIIFTVTKDLDAAFPAIAARNXGWTSTALXCXNEIDVPGSLE 114 (148)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECTTCCSSCTHHHHHHTTCTTSEEEEEECCCCTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89999999999999999997599978989999986685454288999955698741543455266899836
No 59
>>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=24.47 E-value=44 Score=13.90 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=40.0
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89994898999999999999999999972897799987986-----------------4699998787630795323899
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL-----------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs-----------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
-+++.++.+- +..+.+.+.......+.......||. ||..+.+.+.+..+..+++.++
T Consensus 85 aiil~pt~~l-----~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~TP~~l~~~~~~~~~~~~~l~~l 159 (224)
T 1qde_A 85 ALMLAPTREL-----ALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp EEEECSSHHH-----HHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred EEEEECCHHH-----HHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCEE
T ss_conf 9999465676-----33667666430234125677740688889999983699999969726776763594506754155
Q ss_pred ECCCC
Q ss_conf 81321
Q gi|254780505|r 68 LVDER 72 (234)
Q Consensus 68 ~~DER 72 (234)
-+||-
T Consensus 160 VlDEa 164 (224)
T 1qde_A 160 ILDEA 164 (224)
T ss_dssp EEETH
T ss_pred EEEHH
T ss_conf 23037
No 60
>>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} (A:173-291)
Probab=24.40 E-value=24 Score=15.57 Aligned_cols=39 Identities=15% Similarity=0.021 Sum_probs=27.7
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 7289779998798646999987876307953238998132
Q gi|254780505|r 32 TNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDE 71 (234)
Q Consensus 32 ~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DE 71 (234)
..+++...++|||-++...|-. .++..+..-++|...|+
T Consensus 5 ~~~~kvlvllSGGidSvaa~ll-~k~G~~V~~l~~~~~~~ 43 (119)
T 1vbk_A 5 GTEGRMIGILHDELSALAIFLM-MKRGVEVIPVYIGKDDK 43 (119)
T ss_dssp TTTCEEEEECSSHHHHHHHHHH-HHBTCEEEEEEESCSSH
T ss_pred CCCCCEEEEECCCCCHHHHHHH-HHCCCEEEEEEECCCHH
T ss_conf 7667268861477429999999-86698899999479688
No 61
>>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} (A:144-195,A:285-372)
Probab=24.13 E-value=24 Score=15.50 Aligned_cols=18 Identities=50% Similarity=0.560 Sum_probs=10.6
Q ss_pred EEEECCCCCH-HHHHHHHH
Q ss_conf 9998798646-99998787
Q gi|254780505|r 38 SIALSGGLTP-RFFLEELS 55 (234)
Q Consensus 38 ~i~lsGGstp-~~~y~~L~ 55 (234)
+|+|+||+|. .+|.++|.
T Consensus 86 NIVLsGGsTl~pGf~eRL~ 104 (140)
T 1k8k_A 86 NIVLSGGSTMFRDFGRRLQ 104 (140)
T ss_dssp CEEEESGGGCSTTHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHH
T ss_conf 8899776356858899999
No 62
>>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} (A:)
Probab=24.03 E-value=45 Score=13.85 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=17.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 897799987986469999878763
Q gi|254780505|r 34 KGTASIALSGGLTPRFFLEELSII 57 (234)
Q Consensus 34 ~~~~~i~lsGGstp~~~y~~L~~~ 57 (234)
++.-.|+|-+|+|-..+.+.|.+.
T Consensus 19 ~~g~~I~LgsGST~~~l~~~L~~~ 42 (226)
T 2pjm_A 19 KDGMVIGLGTGSTAALFIRELGNR 42 (226)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHH
T ss_pred CCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 999999979379999999999876
No 63
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:278-376,A:544-673)
Probab=23.94 E-value=45 Score=13.84 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=42.6
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 2899948989999999999999999999728977999879864699998787630795
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDW 61 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w 61 (234)
..++.++|..+-...+++.|.+...+.=-.-+.+-|..........+-+.|.+.+|++
T Consensus 35 i~~~~~~~~~~E~~~Ia~~i~~l~~~~g~~~~dIAIL~r~~~~~~~l~~~L~~~gIP~ 92 (229)
T 1uaa_A 35 LKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPY 92 (229)
T ss_dssp BEEEECSSHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHHHHHHTTCCE
T ss_pred EEECCCCCCCCCCCEEEECCCCHHCCCCCCHHHCEEHHHCHHHHHHHHHHHHHCCCCE
T ss_conf 0001233222212100001110000247870010010201011899999999779988
No 64
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285)
Probab=23.80 E-value=45 Score=13.82 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=50.1
Q ss_pred HHCCCEEEEECCCCCH--------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 7289779998798646--------99998787630795323899813210035673202788999762356776321444
Q gi|254780505|r 32 TNKGTASIALSGGLTP--------RFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPL 103 (234)
Q Consensus 32 ~~~~~~~i~lsGGstp--------~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~ 103 (234)
-++|+-.|++=||..- .++.+.+.+..++...+.+.. .+..+-+..+.+.|.+.. .+.-++
T Consensus 13 ~~~G~r~I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~-~~~ai~-- 81 (130)
T 3ctp_A 13 YEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQH--------DFQVKMLEEDINSMKDIV-NYDGIF-- 81 (130)
T ss_dssp HHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSS--------SCCGGGGGCCCTTGGGGG-GSSEEE--
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH--------HHHHHHHHHHHHHHHHCC-CCCHHH--
T ss_conf 986996699964634541688888762013665135622232100--------245778999999985055-998455--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCC
Q ss_conf 588789899999999999631587764899447887714340278
Q gi|254780505|r 104 YYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPK 148 (234)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~ 148 (234)
..+...+...+....+.-...|=|+.+.|++...=.....|.
T Consensus 82 ---~~~d~~A~~~~~~l~~~g~~ip~di~iigfd~~~~~~~~~p~ 123 (130)
T 3ctp_A 82 ---VFNDIAAATVMRALKKRGVSIPQEVQIIGFDNSFIGELLYPS 123 (130)
T ss_dssp ---ESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCTHHHHSSSC
T ss_pred ---HCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHCCC
T ss_conf ---246587899999999849998843332124876889840899
No 65
>>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} (A:)
Probab=23.37 E-value=39 Score=14.21 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCCCCEEEECCCCCC
Q ss_conf 7764899447887714340278641
Q gi|254780505|r 127 FPFDVVVLGMGIDGHTASFFPKGDT 151 (234)
Q Consensus 127 ~~~Dl~lLGiG~DGH~ASlFP~~~~ 151 (234)
+|+.+=+ -+|||.+..|||.+.
T Consensus 38 PPY~VRw---~ddGHe~lv~PGpDa 59 (83)
T 2a7y_A 38 PPYVVRW---LVNGHETTVYPGSDA 59 (83)
T ss_dssp SCEEEEE---TTTTEEEEECCCSSC
T ss_pred CCEEEEE---CCCCCEEEEECCCCE
T ss_conf 9988895---689908889459985
No 66
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=22.73 E-value=48 Score=13.69 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=46.7
Q ss_pred HHCCCEEEEECCCCCH--------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 7289779998798646--------99998787630795323899813210035673202788999762356776321444
Q gi|254780505|r 32 TNKGTASIALSGGLTP--------RFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPL 103 (234)
Q Consensus 32 ~~~~~~~i~lsGGstp--------~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~ 103 (234)
-++|.-.|++=||... .++.+.+.+..++...+..... ..+.+. .......++.....+.-.+ .
T Consensus 13 ~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~ai~-~ 84 (134)
T 3g85_A 13 AKKRYKSAAAILTESLNDAXDNRNKGFIETCHKNGIKISENHIIAA------ENSIHG-GVDAAKKLXKLKNTPKALF-C 84 (134)
T ss_dssp HHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEEC------CSSHHH-HHHHHHHHTTSSSCCSEEE-E
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECC------CCCCHH-HHHHHHHHHHHCCCCCEEE-E
T ss_conf 1022222222356644217777776541011101223442200102------422015-6778887765046542244-2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-EEEEC
Q ss_conf 58878989999999999963158776489944788771-43402
Q gi|254780505|r 104 YYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGH-TASFF 146 (234)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH-~ASlF 146 (234)
.+...+...+....+.....|=|+.++|+|.|++ +++++
T Consensus 85 ----~~d~~a~~~~~~l~~~g~~vP~di~ii~f~~d~~~~~~~~ 124 (134)
T 3g85_A 85 ----NSDSIALGVISVLNKRQISIPDDIEIVAIGXNDREYTEFS 124 (134)
T ss_dssp ----SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSS
T ss_pred ----ECCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCC
T ss_conf ----0222330156776401135884466763267977999605
No 67
>>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis H37RV} (B:)
Probab=21.97 E-value=39 Score=14.24 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=15.7
Q ss_pred CCCCEEEEECCHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 987289994898999999----99999999999997
Q gi|254780505|r 1 MLQYKLYVAENKKRLAQK----LAKKVAEQLSIGIT 32 (234)
Q Consensus 1 M~~~~i~i~~~~~~l~~~----~a~~i~~~i~~~i~ 32 (234)
||.++|...+....-.+. ..+.|.+.+.+...
T Consensus 15 mm~y~V~~s~~a~k~l~kL~~~~~~~i~~~i~~l~~ 50 (102)
T 3g5o_B 15 MVPYTVRFTTTARRDLHKLPPRILAAVVEFAFGDLS 50 (102)
T ss_dssp -CCCEEEEEHHHHHHHTTSCHHHHHHHHHHHTTHHH
T ss_pred CCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 467899997899999986999899999999999876
No 68
>>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structural protein; 2.41A {Rattus norvegicus} (A:1-21,A:182-334)
Probab=21.91 E-value=49 Score=13.59 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=39.8
Q ss_pred CCEEE-EECCCCCCC-------CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 32389-981321003-------5673202788999762356776321444588789899999999999631587764899
Q gi|254780505|r 62 HKVVV-TLVDERFVP-------LENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVV 133 (234)
Q Consensus 62 ~kv~~-~~~DER~V~-------~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~l 133 (234)
-|+-+ --+|| .++ -.-.++|..++.+.|-+.... ....... ..+.++-.+...+.... .|+++
T Consensus 22 prv~Ii~tGdE-iv~~~~~~~~G~v~Dsn~~~l~~~L~~~G~~-v~~~~~v--~Dd~~~i~~~l~~~~~~-----~DiVI 92 (174)
T 2fts_A 22 PVVAVMSTGNE-LLNPEDDLLPGKIRDSNRSTLLATIQEHGYP-TINLGIV--GDNPDDLLNALNEGISR-----ADVII 92 (174)
T ss_dssp CCEEEEEECTT-EECTTSCCCTTCEECCHHHHHHHHHHTTTCC-EEEEEEE--CSSHHHHHHHHHHHHHH-----CSEEE
T ss_pred CEEEEEECCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-EEEEEEE--CCCHHHHHHHHHHHHHH-----CCEEE
T ss_conf 10899952776-5674213465432253078899999977993-7999873--68468889999864543-----45798
Q ss_pred ----ECCCCCCCEE
Q ss_conf ----4478877143
Q gi|254780505|r 134 ----LGMGIDGHTA 143 (234)
Q Consensus 134 ----LGiG~DGH~A 143 (234)
.|.|+|-++.
T Consensus 93 ttGG~g~g~~D~t~ 106 (174)
T 2fts_A 93 TSGGVSMGEKDYLK 106 (174)
T ss_dssp EESCCSSSCCHHHH
T ss_pred EECCCCHHHHHHHH
T ss_conf 50554614678899
No 69
>>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} (A:)
Probab=21.76 E-value=50 Score=13.57 Aligned_cols=57 Identities=21% Similarity=0.157 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 999999999999999999--728977999879864699998787630795323899813210
Q gi|254780505|r 14 RLAQKLAKKVAEQLSIGI--TNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERF 73 (234)
Q Consensus 14 ~l~~~~a~~i~~~i~~~i--~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~ 73 (234)
.+...+.+.+.+.+.+.. .....+.|++|||.--..++..+.+.. .++.++++|-.+
T Consensus 23 ~~~~~~~~~~~~~i~~~~~~~~~~~v~v~~SGGkDSt~ll~l~~~~~---~~~~~~~~d~g~ 81 (252)
T 2o8v_A 23 ETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIR---PDIPVILTDTGY 81 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHS---TTCEEEECCCSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC---CCCEEEEEECCC
T ss_conf 99998736999999999998769988999338778999999998158---995089996799
No 70
>>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii OT3} (A:)
Probab=21.55 E-value=50 Score=13.55 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=17.9
Q ss_pred HHHHHCCCCCCEEEECCCCCCCEE
Q ss_conf 996315877648994478877143
Q gi|254780505|r 120 KICQLIHFPFDVVVLGMGIDGHTA 143 (234)
Q Consensus 120 ~~~~~~~~~~Dl~lLGiG~DGH~A 143 (234)
.+..+..+.+|++++|.|..++.-
T Consensus 52 ~~~~~~~~~peiliiGtG~~~~~~ 75 (118)
T 2cyj_A 52 ELEKYLVEDFDVLLVGTGIYGMLS 75 (118)
T ss_dssp HHHTTTTSCCSEEEEEECTTCCCE
T ss_pred HHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 999985159978999358865568
No 71
>>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str} (A:1-147,A:235-255)
Probab=21.42 E-value=51 Score=13.53 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 89779998798646999987876307953238998132
Q gi|254780505|r 34 KGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDE 71 (234)
Q Consensus 34 ~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DE 71 (234)
++.-.|.|-+|+|...+.+.|.+..-.-..+++.....
T Consensus 40 ~dg~~I~ld~GST~~~la~~L~~~~~~~~~~~ivtgg~ 77 (168)
T 3hhe_A 40 EDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQ 77 (168)
T ss_dssp CTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 99999997974799999999999886477369996778
No 72
>>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} (A:)
Probab=21.32 E-value=51 Score=13.52 Aligned_cols=18 Identities=11% Similarity=-0.081 Sum_probs=8.5
Q ss_pred EEECCCCCCCHHHHHHHH
Q ss_conf 144458878989999999
Q gi|254780505|r 100 FIPLYYPQKTIEEAIRIA 117 (234)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~ 117 (234)
++-++....+.++....+
T Consensus 122 ~Iv~~gg~GTl~E~~~a~ 139 (195)
T 1rcu_A 122 VVSIGGEIGTAIEILGAY 139 (195)
T ss_dssp EEEESCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHH
T ss_conf 055043443589999999
No 73
>>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Porphyromonas gingivalis W83} (A:1-187)
Probab=20.89 E-value=52 Score=13.46 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=28.7
Q ss_pred CCCEEEEECCC-CCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 89779998798-6469999878763079532389981
Q gi|254780505|r 34 KGTASIALSGG-LTPRFFLEELSIINVDWHKVVVTLV 69 (234)
Q Consensus 34 ~~~~~i~lsGG-stp~~~y~~L~~~~~~w~kv~~~~~ 69 (234)
+.-..|+++|+ ..|..+.++|.+..-.+++++++-.
T Consensus 23 ~~G~~I~~~g~~~~P~~l~~aL~~~~~~~~~l~l~~~ 59 (187)
T 3d3u_A 23 KPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHM 59 (187)
T ss_dssp CTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 8949999889867899999999986568999699986
No 74
>>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} (A:1-244)
Probab=20.86 E-value=52 Score=13.46 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=33.8
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630795323899
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
+.+.++++.. ..+...+.......+.....+.||. ||..+.+.+.+..+..+++.++
T Consensus 109 ~i~~ptrel~-----~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~iiv~Tp~rl~~~~~~~~~~l~~l~~l 183 (244)
T 2j0s_A 109 LILAPTRELA-----VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 183 (244)
T ss_dssp EEECSSHHHH-----HHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred EEEECCHHHH-----HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCHHH
T ss_conf 9980421245-----56999999861355213543201231566777644576388538430000223222200112000
Q ss_pred ECCCC
Q ss_conf 81321
Q gi|254780505|r 68 LVDER 72 (234)
Q Consensus 68 ~~DER 72 (234)
-+||-
T Consensus 184 VlDEa 188 (244)
T 2j0s_A 184 VLDEA 188 (244)
T ss_dssp EEETH
T ss_pred HHHHH
T ss_conf 03554
Done!