HHsearch results for GI: 254780505 and protein with PDBid: 1y89_A

>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00  E-value=0  Score=365.61  Aligned_cols=214  Identities=21%  Similarity=0.296  Sum_probs=188.3

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCCCCC
Q ss_conf             987289994898999999999999999999972897799987986469999878763----0795323899813210035
Q gi|254780505|r    1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERFVPL   76 (234)
Q Consensus         1 M~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~V~~   76 (234)
                      ||++  ++|+|.+++++++|+.|.+.    +++++.++|+||||+||+.+|+.|++.    ++||+||+||++||||||.
T Consensus         1 m~n~--~if~~~~~~~~~~a~~i~~~----~~~~~~~~i~lsGG~tp~~~y~~L~~~~~~~~l~w~~v~~f~~DER~V~~   74 (238)
T 1y89_A            1 MINH--KIFPTADAVVKSLADDMLAY----SQQGQPVHISLSGGSTPKMLFKLLASQPYANDIQWKNLHFWWGDERCVAP   74 (238)
T ss_dssp             CEEE--EEESSHHHHHHHHHHHHHHH----HTTSSCEEEEECCSHHHHHHHHHHTSTTHHHHSCGGGEEEEESEEESSCT
T ss_pred             CCCE--EEECCHHHHHHHHHHHHHHH----HHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECEEECCCC
T ss_conf             9843--88199999999999999999----98589889997799679999999986552248981576999551445587


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCC-----CCCCEEEECCCCCCCEEEECCCCCC
Q ss_conf             67320278899976235677632144458878989999999999963158-----7764899447887714340278641
Q gi|254780505|r   77 ENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH-----FPFDVVVLGMGIDGHTASFFPKGDT  151 (234)
Q Consensus        77 ~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dl~lLGiG~DGH~ASlFP~~~~  151 (234)
                      +|++||+++++++|+++.+.+..+++.+.+..+++++++.|++.+.+...     ++||+++||||+||||||||||++.
T Consensus        75 ~~~~Sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~lLG~G~DGHiASlfP~~~~  154 (238)
T 1y89_A           75 DDAESNYGEANALLFSKINMPAQNIHRILGENEPQAEAERFAQAMAHVIPTENGTPVFDWILLGVGADGHTASLFPGQTD  154 (238)
T ss_dssp             TSTTCHHHHHHHHTGGGSCCCGGGBCCCCTTSCHHHHHHHHHHHHHHHSCEETTEECCSEEEECCCTTSCBTTBCTTTCC
T ss_pred             CCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCH
T ss_conf             66655687774410122356521043567778989999999999998645521799777688614688853634799810


Q ss_pred             CEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC-CCCHHHHHHCCCC
Q ss_conf             00221566743189953899872158708788841582999981834899999998089832-0608999618999
Q gi|254780505|r  152 LSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL-EMPIRAILWNAQS  226 (234)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~-~~Pas~ll~~~~~  226 (234)
                      +.      ....++....+++|++|||||++.|++|++|+|+++|++|++++++++.++.+. .+||++++.+.+.
T Consensus       155 ~~------~~~~~~~~~~p~~p~~RiTlt~~~i~~a~~i~~~~~G~~K~~~~~~~~~~~~~~~~~Pa~~l~~~~~~  224 (238)
T 1y89_A          155 YA------DANLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAEQLPYPAAKIHSTSGV  224 (238)
T ss_dssp             TT------CCSSEEEEECTTTCCEEEEECHHHHHHSSEEEEEECSGGGHHHHHHHHHSCGGGCCCHHHHCCCSSSE
T ss_pred             HC------CCCEEEEECCCCCCCCCCCCCHHHHHHHCEEEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCC
T ss_conf             02------47515870599998340047789998409689998485899999999838999887587885469996