HHsearch results for GI: 254780505 and protein with PDBid: 3kv1_A

>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114}
Probab=98.31  E-value=1.3e-05  Score=52.96  Aligned_cols=195  Identities=9%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf             89899999999999999999997289779998798646999987876307953238998132100356732027889997
Q gi|254780505|r   10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKF   89 (234)
Q Consensus        10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~   89 (234)
                      ++.++..+.+++..++.+...++.  .-.|+++.|+|...+.+.|...  .-.+++|..+== -+...+...+...+-+.
T Consensus        32 ~~~~~~~~~v~~~aA~~l~~~l~~--~~~iGv~wG~Tl~~~~~~l~~~--~~~~~~vv~l~G-g~~~~~~~~~~~~i~~~  106 (267)
T 3kv1_A           32 PNTNEQRKQVAALVSSYLNNNLQE--GMAVAVGQGQNVAAVADHAGIV--TQRNARFVSAIG-GTHRSGDIINADHICRR  106 (267)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHCCT--TCEEEECCSHHHHHHHHCCCCC--CCCCCEEEESBC-BCC----CCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHCCCC--CCCCCEEEECCC-CCCCCCCCCCHHHHHHH
T ss_conf             993699999999999999975768--9889994788999999835766--778956994688-76777675689999999


Q ss_pred             HHCCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCC-----CCCEEECCC-
Q ss_conf             6235677632144458878989999-----99999996315877648994478877143402786-----410022156-
Q gi|254780505|r   90 FLQNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKG-----DTLSIALDT-  158 (234)
Q Consensus        90 ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~-----~~l~~~~~~-  158 (234)
                      |-+....+..++|.|.--.+.+...     ..+.+-+....  ..|+++.|+|.=+..+++....     +........ 
T Consensus       107 lA~~~gg~~~~l~aP~~v~s~~~~~~l~~e~~i~~~l~~~~--~~diai~GIG~~~~~~~~~~~~~~~~~e~~~~l~~~g  184 (267)
T 3kv1_A          107 LAKKYGGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQAR--KAEFALVGIGDMDENSHMVKLGFFTPKEFVEARLNDG  184 (267)
T ss_dssp             HHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHHH--TCSEEEEEEEEHHHHTHHHHTTSSCHHHHHHHHHTTC
T ss_pred             HHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHH--HCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHCC
T ss_conf             99982998999827822799999999975868999999998--6999999526888774045416898699999999789


Q ss_pred             -C---CCCCEEEECCCCC--C-C-EEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf             -6---7431899538998--7-2-1587087888415829999818348999999980898
Q gi|254780505|r  159 -H---TPRSVIAIKDYTS--N-E-QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD  211 (234)
Q Consensus       159 -~---~~~~~~~~~~~~~--p-~-~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~  211 (234)
                       .   ....++-.+....  + . +.|.+++..|.+.++++.++.|++|++++..++.|.-
T Consensus       185 avgdi~~~rf~D~~G~~v~~~~~~r~igi~le~l~~ip~~I~vA~G~~K~~AI~aALrgg~  245 (267)
T 3kv1_A          185 IVGDIGGFDFFKLDGTDADTLMRGRVIGLEMEDLRQIPNVVAMASESRKALSIMGALRTGV  245 (267)
T ss_dssp             EEEEETTTEEEETTSCBCCCGGGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTSC
T ss_pred             CEEEEECCEEECCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf             5799933403658998955634254211687997479968999678166999999983599