HHSEARCH alignment of GI: 254780505 and SCOP domain: d3efba1

Alignment
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]}
Probab=99.65  E-value=1.3e-16  Score=118.92  Aligned_cols=196  Identities=9%  Similarity=-0.020  Sum_probs=114.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC--CCCCCEEEEECC-CCCCCCCCCCCHHHHH
Q ss_conf             8989999999999999999999728977999879864699998787630--795323899813-2100356732027889
Q gi|254780505|r   10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN--VDWHKVVVTLVD-ERFVPLENLRSNQSFI   86 (234)
Q Consensus        10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~--~~w~kv~~~~~D-ER~V~~~~~~Sn~~~~   86 (234)
                      ++.++..+.+++..++.+.+.++.  ...|++++|+|+..+++.|.+..  .++.-+.++-.. .+..+..+.++....+
T Consensus        26 ~~~~~~~~~lg~aAA~~l~~~l~~--~~~igvswG~T~~~~~~~l~~~~~~~~~~~v~l~G~~~~~~~~~~~~~~~~~~~  103 (255)
T d3efba1          26 EDEETQLAMMGLHGAQLLDRLLEP--GDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSA  103 (255)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCCT--TCEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             760689999999999999986789--988999386889999998220034678169981467677757877878999999


Q ss_pred             HHHHHCCCCCCCCEEECCCCCC---CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC----CCC
Q ss_conf             9976235677632144458878---989999999999963158776489944788771434027864100221----566
Q gi|254780505|r   87 SKFFLQNKAQKASFIPLYYPQK---TIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL----DTH  159 (234)
Q Consensus        87 ~~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~----~~~  159 (234)
                      .+.|..+.....  .|.+.+..   +.......+.+.++...  .+|++++|||.+||.++++|+........    ...
T Consensus       104 a~~~~~~~~~l~--~P~~~~~~~~~~~l~~~~~v~~~l~~~~--~~Dval~GIG~~~~~~~~~~~~~~~~~~~~~l~~~~  179 (255)
T d3efba1         104 AAKLKGESHLAD--FPALLDNPLIRNGIMQSQHFKTISAYWD--NLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQ  179 (255)
T ss_dssp             HHHTTCEECCCC--SBSBCSSHHHHHHHHTSHHHHHHHHHHH--TCSEEEECCBCCC---------CSCHHHHHHHHHTT
T ss_pred             HHHHCCCCCCCC--CCCCCCCHHHHHHHHHCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             999289644777--5335799889999985859999999750--599999916878765654456788889999999848


Q ss_pred             --CCCCEEEECC------CCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf             --7431899538------998721587087888415829999818348999999980898
Q gi|254780505|r  160 --TPRSVIAIKD------YTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD  211 (234)
Q Consensus       160 --~~~~~~~~~~------~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~  211 (234)
                        .+-...+.+.      .+.+.+.|++++..|+++++++++|.|++|+++++.++.|.-
T Consensus       180 avgdi~~~f~d~~G~~v~~~~~~r~i~i~l~~l~~~~~~I~vA~G~~Ka~aI~aaL~gg~  239 (255)
T d3efba1         180 VAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKY  239 (255)
T ss_dssp             CCEEETTEEECTTSCBCCCTTGGGBCBCCHHHHHTSSEEEEECCCSCSSCHHHHHHHTTS
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf             299997323767998945667740565588997168838999658166999999983699


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Sor-operon regulator SorC
species: Shigella flexneri [TaxId: 623]