RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str. psy62] (234 letters) >3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} (A:) Length = 232 Score = 154 bits (390), Expect = 1e-38 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 1/229 (0%) Query: 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHK 63 + + EN AQ LA VA+ L + KG A +A+SGG +P F LS ++DW Sbjct: 3 FVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQKDLDWKN 62 Query: 64 VVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQ 123 V +TL DER VP + SN + ++ L+NKA A +IP KT E A Sbjct: 63 VGITLADERIVPTNHADSNTGLVREYLLKNKAAAAVWIPXVEDGKTETELHPDAVVDYAL 122 Query: 124 LIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSA 183 + DV++LG G DGHTAS FPK A+D +++ T+ +R++ T A Sbjct: 123 KHYKQPDVLILGXGNDGHTASIFPKAPQFQTAIDGSAGVALVHTTPVTAPHERISXTLDA 182 Query: 184 LHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHW 232 + + L I+G +KK V ++A G++ E PI +L + V + Sbjct: 183 IAHTGHVFLAIQGEEKKAVFDQAAQGENR-EYPISLVLNHQGVNCHVFY 230 >3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax} (A:) Length = 312 Score = 134 bits (338), Expect = 1e-32 Identities = 50/270 (18%), Positives = 89/270 (32%), Gaps = 42/270 (15%) Query: 1 MLQYKLYVAENKKRLAQKLAKKVAEQLS--IGITNKGTASIALSGGLTPRFFLEELSII- 57 + K A++ QK A + Q++ G I LSGG TP + ++++ Sbjct: 24 LHNVKYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVK 83 Query: 58 --NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIR 115 +D K++ ++DER+ ++ SN + I F K + + K I E +R Sbjct: 84 DIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQLYRPDTSKNIVECVR 143 Query: 116 IANEKICQLIHF--PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSN 173 NEKI + D+ +LG G D H AS FP + +N Sbjct: 144 DYNEKIKNXVKKYTKVDIAILGXGSDFHIASLFPNIFFNIYXNNYQNSYIYDESSIKVAN 203 Query: 174 ---------------------------EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKA 206 +R+T++ L +A + T K + + Sbjct: 204 SNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSKIFLLNSTDKLDLWKNX 263 Query: 207 ISGD----DALEMPIRAILWNAQSPLEVHW 232 + + P + Sbjct: 264 LLKSYVDVNYCLYPAVYL----IDSXNTTV 289 >1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.55A {Thermotoga maritima} (A:) Length = 232 Score = 134 bits (338), Expect = 1e-32 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 10/221 (4%) Query: 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVD 60 K + + + +K+ ++ + K + L+GG TP E+L+ Sbjct: 11 HHMEKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFP 70 Query: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK 120 W+++ L DER+VPL++ +SN I++ + + IE+A + Sbjct: 71 WNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYERE 130 Query: 121 ICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMT 180 I FD+ +LGMG DGH AS F + R+T+T Sbjct: 131 IRSA-TDQFDLAILGMGPDGHVASIFDLETGNK-----DNLVTFTDPSGD-PKVPRVTLT 183 Query: 181 FSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221 F AL+ + ++ I G +K + L + + +P + Sbjct: 184 FRALNTSLYVLFLIRGKEKINRLTEILKDTP---LPAYFVR 221 >3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogenic protozoa consortium, SGPP, leishmaniasis; 1.70A {Leishmania braziliensismhom} PDB: 3ch7_A (A:) Length = 267 Score = 132 bits (333), Expect = 4e-32 Identities = 46/253 (18%), Positives = 89/253 (35%), Gaps = 27/253 (10%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN---VDW 61 + + EN +++ + + + + +ALSGG TP+ EEL + + Sbjct: 7 TVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKDLALLQQ 66 Query: 62 HKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQK-----------TI 110 H V L DER + ++ +SN S +K L++ Sbjct: 67 HAVQFILGDERLLSEDDEQSNFSMATKALLRDVPSSDVISIDRRAALATSKDEKGGLDGA 126 Query: 111 EEAIRIANEKICQLI-----------HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTH 159 + K+ + D+V+LG G DGHTAS FP + Sbjct: 127 WAVAQDYEVKLLNCLPCKQINGTAKSVPVVDIVLLGFGSDGHTASIFPDSVAATDEEHVV 186 Query: 160 TPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRA 219 + R+T++ + + A+ + + G K V+ +S +P+ Sbjct: 187 SVSFPSPTMS--PKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESPTDPLPVSR 244 Query: 220 ILWNAQSPLEVHW 232 L + + + + Sbjct: 245 FLRDCRGSVTLLL 257 >1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:) Length = 238 Score = 128 bits (322), Expect = 7e-31 Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 20/238 (8%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS----IINVD 60 + + + LA I+LSGG TP+ + L+ ++ Sbjct: 3 NHKIFPTADAVVKSLADDXLAY----SQQGQPVHISLSGGSTPKXLFKLLASQPYANDIQ 58 Query: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK 120 W + DER V ++ SN + A I + + + Sbjct: 59 WKNLHFWWGDERCVAPDDAESNYGEANALLFSKINXPAQNIHRILGENEPQAEAERFAQA 118 Query: 121 ICQLIHF-----PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQ 175 +I FD ++LG+G DGHTAS FP SV+A S + Sbjct: 119 XAHVIPTENGTPVFDWILLGVGADGHTASLFPGQT-----DYADANLSVVASHPE-SGQL 172 Query: 176 RMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWT 233 R++ T L A+ ++ + G K ++E+ + ++P A ++ S + + Sbjct: 173 RVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAE-QLPYPAAKIHSTSGVTEWYL 229 >3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME disease, non-hodgkin lymphomas; 2.20A {Borrelia burgdorferi B31} (A:) Length = 289 Score = 127 bits (319), Expect = 2e-30 Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 18/241 (7%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLS-IGITNKGTASIALSGGLTPRFFLEELS----IINV 59 +L + + +++ A VA++++ T + + L G +P + L + Sbjct: 23 RLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKI 82 Query: 60 DWHKVVVTLVDER-FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIAN 118 + V+ +DE + + S SF+ F + K I + + + Sbjct: 83 SFQNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEEY 142 Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFPK----GDTLSIALDTHTPRSVIAIKDYTSNE 174 EK + + V G+G DGH A P T L T + + N+ Sbjct: 143 EKKIKS-FGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNK 201 Query: 175 ---QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 +T+ + D+Q + + + G K L+ AI I A+ + Sbjct: 202 VPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHK----NAI 257 Query: 232 W 232 Sbjct: 258 I 258 >2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* (A:) Length = 242 Score = 123 bits (309), Expect = 2e-29 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 16/228 (7%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS----IINVD 60 K+ + + L+Q A+ A+ I K A + L+ G TP +L N+ Sbjct: 2 KVMECQTYEELSQIAARITADT----IKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLS 57 Query: 61 WHKVVVTLVDERFV-PLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANE 119 + + +DE ++ S +++ F Q+ K S + EA E Sbjct: 58 FQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYE 117 Query: 120 KICQLIHFPFDVVVLGMGIDGHTASFFP----KGDTLSIALDTHTPRSVIAIKDYTSN-- 173 ++ + D+ +LG+G +GH P K T + L+ T ++ + Sbjct: 118 QLVDSLGD-TDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPSIDSVP 176 Query: 174 EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221 ++ +TM + ++ + L I G K + K + G+ + + P A+ Sbjct: 177 KKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALH 224 >1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} (A:) Length = 289 Score = 122 bits (308), Expect = 3e-29 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 20/242 (8%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLS-IGITNKGTASIALSGGLTPRFFLEELS----IINV 59 KL + E+ + ++ AK + ++ + ++ L G TP ++L ++ Sbjct: 2 KLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDL 61 Query: 60 DWHKVVVTLVDERFVPLE-NLRSNQSFISKFFLQNKAQKAS-FIPLYYPQKTIEEAIRIA 117 + V +DE + S SF+ F ++ L ++ Sbjct: 62 SFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAF 121 Query: 118 NEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS----IALDTHTPRSVIAIKDYTSN 173 EKI ++ V G+G DGH A P +S L T + D Sbjct: 122 EEKIKA--AGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELT 179 Query: 174 E---QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEV 230 + +T+ + DA+ + + I G K L KAI + A + Sbjct: 180 KVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHP----RT 235 Query: 231 HW 232 + Sbjct: 236 VF 237 >3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A* (A:) Length = 266 Score = 122 bits (308), Expect = 3e-29 Identities = 47/251 (18%), Positives = 90/251 (35%), Gaps = 24/251 (9%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS----IINVD 60 + V + L+ +K+ E + + + SIAL+GG TP+ L + + Sbjct: 6 TISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLRE 65 Query: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTI--------EE 112 + + DER VP ++ SN + + L + F Sbjct: 66 KRALRFFMGDERMVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADAMR 125 Query: 113 AIRIANEKICQLI-----------HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTP 161 +++ L+ FDVV+LG+G DGHTAS FP Sbjct: 126 VAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVV 185 Query: 162 RSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221 + R+T++ + + A+ + + G +KK V++ ++ + P+ L Sbjct: 186 SVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAH-KAPVARFL 244 Query: 222 WNAQSPLEVHW 232 + + Sbjct: 245 RGCEGNVSFLL 255 >3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis} (A:) Length = 268 Score = 122 bits (307), Expect = 4e-29 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 16/229 (6%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN--VDWH 62 + + + L K++ + + +G A I L+GG L LS ++W Sbjct: 25 SIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQAQQIEWS 84 Query: 63 KVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQ-----KTIEEAIRIA 117 KV + DER+VP ++ N + L + ++ + ++ A Sbjct: 85 KVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAY 144 Query: 118 NEKICQLIHF-----PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTS 172 + + FDV +LGMG +GH S FP S A+ T V Sbjct: 145 EQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFP----HSPAVLESTRMVVAVDDSPKP 200 Query: 173 NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221 +R+T+T A+ ++ + L + G K + AI G D + +P + Sbjct: 201 PPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAV 249 >1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase, multiple conformers; HET: 16G TLA; 1.73A {Escherichia coli} (A:) Length = 266 Score = 118 bits (297), Expect = 5e-28 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTAS-IALSGGLTPRFFLEELS----IINV 59 +L +++ + A+ + +++ + L G TP + L V Sbjct: 2 RLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQV 61 Query: 60 DWHKVVVTLVDER-FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIAN 118 + VV +DE +P E+ S SF+ + F + A I L +A Sbjct: 62 SFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQY 121 Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS------IALDTHTPRSVIAIKDYTS 172 E+ + + + G+G DGH A P S + DT S D Sbjct: 122 EEKIRSYGK-IHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ 180 Query: 173 N-EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 + +T+ L DA+ + + + G+QK L+ A+ G I + + + Sbjct: 181 VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHP----KAI 236 Query: 232 W 232 Sbjct: 237 M 237 >2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism, hydrolase; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A* (A:) Length = 234 Score = 114 bits (286), Expect = 1e-26 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 16/224 (7%) Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKV 64 K +NK ++ + + E++ G ++ L+ G TP +E+ ++D+ + Sbjct: 3 KTIKVKNKTEGSKVAFRMLEEEI-----TFGAKTLGLATGSTPLELYKEIRESHLDFSDM 57 Query: 65 VVTLVDE-RFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQ 123 V +DE + ++ +S F+ + K K S++P +E ++I Sbjct: 58 VSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPNGLAADLAKETEY--YDQILA 115 Query: 124 LIHFPFDVVVLGMGIDGHTASFFPKGDTLS------IALDTHTPRSVIAIKDYTSNEQRM 177 +P D+ +LG+G + H P S + T S K +Q + Sbjct: 116 --QYPIDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAI 173 Query: 178 TMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221 +M +++ A+ + L G +K + + G E+P + Sbjct: 174 SMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQ 217 >3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114} (A:) Length = 267 Score = 82.5 bits (203), Expect = 5e-17 Identities = 18/221 (8%), Positives = 47/221 (21%), Gaps = 22/221 (9%) Query: 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVV 65 N +++A V+ L+ + +A+ G + I+ + V Sbjct: 28 SLDQPNTNEQRKQVAALVSSYLNNNLQEGXA--VAVGQGQNVAAVADHAGIVTQRNARFV 85 Query: 66 VTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLI 125 N I + + + + + Sbjct: 86 ---SAIGGTHRSGDIINADHICRRLAKKYGGSSETLYAPAYVNDPSLRSAFXEHATIKET 142 Query: 126 HF---PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVI--------------AIK 168 + ++G+G + G I Sbjct: 143 LSQARKAEFALVGIGDXDENSHXVKLGFFTPKEFVEARLNDGIVGDIGGFDFFKLDGTDA 202 Query: 169 DYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209 D + + + L + ++K + A+ Sbjct: 203 DTLXRGRVIGLEXEDLRQIPNVVAXASESRKALSIXGALRT 243 >2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae TIGR4} (A:) Length = 266 Score = 74.5 bits (182), Expect = 1e-14 Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 23/236 (9%) Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67 + L++++++ A L I I S G + ++ + + V Sbjct: 32 FDDTPTILSERISQVAAGVLRNLI--DDNXKIGFSWGKSLSNLVDLI--HSKSVRNVHFY 87 Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKA-SFIPLYYPQKTIEEAIRIANEKICQL-I 125 + + + I + + + + K + + I + Sbjct: 88 PLAGGPSHIHAKYHVNTLIYEXSRKFHGECTFXNATIVQENKLLADGILQSRYFENLKNS 147 Query: 126 HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIA------------IKDYTSN 173 D+ V+G+G + T + Sbjct: 148 WKDLDIAVVGIGDFSNKGKHQWLDXLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQ 207 Query: 174 EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL-----EMPIRAILWNA 224 E+ + ++ L + G K + + + + I +L Sbjct: 208 ERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEED 263 >2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} (A:) Length = 264 Score = 74.4 bits (182), Expect = 1e-14 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 19/218 (8%) Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67 ++++ + Q + A L ++ + I+ S T R + V Sbjct: 32 EPDDEESIKQAIGSAAAHYLETSLSAQDHIGIS-SWSSTIRAXVSHXHPQPGKQSAQEV- 89 Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH- 126 V + +++ A +P ++++E RI + + + Sbjct: 90 -VQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQSIEQSVESKQRIVEXEEVKEVLH 148 Query: 127 --FPFDVVVLGMGIDGHTASFFPKG----DTLSIALDTHT---------PRSVIAIKDYT 171 + ++G+G + G + L + Sbjct: 149 RFDSITLAIVGIGELEPSQLLRNSGNYYTEDXLRVLAERGAVGDICLRYFDAQGKPVLEE 208 Query: 172 SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209 E ++ L + G +K ++ A+ G Sbjct: 209 DEEFVVSXGLGKLRSINRVLGLAGGVRKVQAIKGALLG 246 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:55-315) Length = 261 Score = 72.2 bits (176), Expect = 5e-14 Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 18/217 (8%) Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67 ++ + + A + + + I S G R +E L +V+ Sbjct: 30 DGLLEEEQLSAMGQHGALLVDRLL--EPGDIIGFSWGRAVRSLVENL-PQRSQSRQVICV 86 Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH- 126 + R + + ++ ++ I + + I Sbjct: 87 PIIGGPSGKLESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISS 146 Query: 127 --FPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVI------------AIKDYTS 172 DV ++G+G S D R V + D Sbjct: 147 YWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNM 206 Query: 173 NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209 +E+ +++ + L A++ G +K + A+ G Sbjct: 207 SEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHG 243 >2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} (A:) Length = 255 Score = 71.7 bits (175), Expect = 8e-14 Identities = 21/209 (10%), Positives = 56/209 (26%), Gaps = 13/209 (6%) Query: 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTL 68 ++ + ++ + G +A++GG T E + D + Sbjct: 32 SDQSPWVKKEXGRAAVACXKKRF--SGKNIVAVTGGTTIEAVAEXXTP---DSKNRELLF 86 Query: 69 VDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHF- 127 V R E++++ + I + + + + + I + ++++ Sbjct: 87 VPARGGLGEDVKNQANTICAHXAEKASGTYRLLFVPGQLSQGAYSSIIEEPSVKEVLNTI 146 Query: 128 -PFDVVVLGMGIDGHTASFFPKGDTLS------IALDTHTPRSVIAIKDYTSNEQRMTMT 180 +V G+G A A+ A + + Sbjct: 147 KSASXLVHGIGEAKTXAQRRNTPLEDLKKIDDNDAVTEAFGYYFNADGEVVHKVHSVGXQ 206 Query: 181 FSALHDAQFLALHIEGTQKKHVLEKAISG 209 + + G+ K +E Sbjct: 207 LDDIDAIPDIIAVAGGSSKAEAIEAYFKK 235 >3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str} (A:) Length = 266 Score = 67.1 bits (163), Expect = 2e-12 Identities = 21/217 (9%), Positives = 59/217 (27%), Gaps = 18/217 (8%) Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67 E+++ A+ L + + + S G +E L +++ Sbjct: 35 NDEDEETQLAXXGLHGAQLLDRLL--EPGDIVGFSWGRAVSALVENLPQA-GQSRQLICV 91 Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIE-EAIRIANEKICQLIH 126 + R + + ++ ++ ++ + Sbjct: 92 PIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIXQSQHFKTISA 151 Query: 127 F--PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVI------------AIKDYTS 172 + D+ ++G+G D R V A + Sbjct: 152 YWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAXVETNX 211 Query: 173 NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209 +E+ +++ + L A++ +K + A+ G Sbjct: 212 SEKTLSIEXNKLKQARYSIGIAXSEEKYSGIIGALRG 248 >2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} (A:) Length = 345 Score = 66.8 bits (162), Expect = 2e-12 Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 7/201 (3%) Query: 15 LAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFV 74 + + L++ + N G +IA+ GG T E + + + Sbjct: 123 VLSDFGDVLTNTLNLLLPN-GENTIAVXGGTTXAXVAENXGSLETEKRHNLFVPARGGIG 181 Query: 75 PLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVL 134 ++++N +A ++P ++T ++ + + + + VV Sbjct: 182 EAVSVQANSISAVXANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVH 241 Query: 135 GMGIDGHTASFFPKGD------TLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQ 188 +G H A+ D A+ R+ + L + Sbjct: 242 SIGRALHXAARRKXSDDEXVXLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIP 301 Query: 189 FLALHIEGTQKKHVLEKAISG 209 ++ G K + Sbjct: 302 YVVAIAGGKTKAKAIRAYXKN 322 >2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} (A:292-411) Length = 120 Score = 28.3 bits (63), Expect = 1.0 Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 77 ENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHF 127 E +R+ ++ I + ++ + K I + +E I I LI+ Sbjct: 13 EYVRTRRALILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLINT 63 >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} (A:1-274,A:432-527,A:631-662) Length = 402 Score = 27.0 bits (58), Expect = 2.0 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Query: 106 PQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASF 145 P K + IA I + D++++G G+ A+F Sbjct: 3 PSKETPRGVAIAEPII---VEHSVDLLMVGGGMGNCGAAF 39 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 26.7 bits (58), Expect = 2.7 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 7/71 (9%) Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL-----TPRFFLEELSIINVDWH 62 +A + ++ K ++ K + TP ++ + +D Sbjct: 201 LARQIMDVVTEMGKY--TEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDAR 258 Query: 63 KVVVTLVDERF 73 + V ++DE Sbjct: 259 DIKVFVLDEAD 269 >1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} (S:1-180) Length = 180 Score = 26.2 bits (57), Expect = 4.0 Identities = 15/135 (11%), Positives = 38/135 (28%), Gaps = 12/135 (8%) Query: 38 SIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQK 97 S ++ P L +++D+H+ T++ E + + + Sbjct: 21 SESVLRAFEPYIDTLILDTLSLDYHE---TIMAAAGDAAEAAL-------EQAVNSPHGF 70 Query: 98 ASFIPLYYPQKTIEEAIRIANEKICQLIH--FPFDVVVLGMGIDGHTASFFPKGDTLSIA 155 + + P ++AN + + P V+ G + A Sbjct: 71 IAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGA 130 Query: 156 LDTHTPRSVIAIKDY 170 + + +K Sbjct: 131 KGVNDALKHLGVKAI 145 >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} (A:1-159,A:272-374) Length = 262 Score = 25.7 bits (55), Expect = 5.5 Identities = 9/53 (16%), Positives = 19/53 (35%) Query: 127 FPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTM 179 +D++V+G G G A+ +AL + + ++ M Sbjct: 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFN 53 >1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:) Length = 186 Score = 25.5 bits (55), Expect = 7.1 Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 17/122 (13%) Query: 107 QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIA 166 + +++ I + G G G A F H + Sbjct: 16 HNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSF-------AMRLMHMGFNAHI 68 Query: 167 IKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQS 226 + + + L + G+ + L + +L + A+ N +S Sbjct: 69 VGEIL----------TPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPES 118 Query: 227 PL 228 + Sbjct: 119 SI 120 >3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} (A:1-126,A:284-326) Length = 169 Score = 25.3 bits (54), Expect = 7.6 Identities = 6/18 (33%), Positives = 10/18 (55%) Query: 129 FDVVVLGMGIDGHTASFF 146 V ++G G HTA+ + Sbjct: 11 NKVTIIGSGPAAHTAAIY 28 >3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structural genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} (A:1-87,A:149-321) Length = 260 Score = 25.1 bits (54), Expect = 8.0 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 5/57 (8%) Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFPKGD----TLSIA-LDTHTPRSVIAIKDY 170 ++ + PF + V G G + D HTP + KD Sbjct: 190 IELARQTDIPFQLEVEGAGASDGRELQLSPYPWDWCFIGAPEKDAHTPNECVHKKDI 246 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0549 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,729,464 Number of extensions: 73531 Number of successful extensions: 401 Number of sequences better than 10.0: 1 Number of HSP's gapped: 373 Number of HSP's successfully gapped: 36 Length of query: 234 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 148 Effective length of database: 2,048,819 Effective search space: 303225212 Effective search space used: 303225212 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.6 bits)