BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase
[Candidatus Liberibacter asiaticus str. psy62]
(234 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 234
Score = 485 bits (1248), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVD 60
MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVD
Sbjct: 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVD 60
Query: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK 120
WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK
Sbjct: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK 120
Query: 121 ICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMT 180
ICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMT
Sbjct: 121 ICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMT 180
Query: 181 FSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWTS 234
FSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWTS
Sbjct: 181 FSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWTS 234
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 57 INVDWHKVVVTLVDERFVPLENLRSNQSFIS 87
I DW K ++ + F P+ N+R + ++S
Sbjct: 444 IEADWRKKIIGPLGILFTPIANIRGDLHYLS 474
>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 223
Score = 24.3 bits (51), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 117 ANEKICQLIHFPF 129
NE ICQL+ PF
Sbjct: 65 TNETICQLLDLPF 77
>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 753
Score = 23.9 bits (50), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 142 TASFFPKGDTLSIALDTHTPRSVI 165
+A F +GD+L IAL HT ++
Sbjct: 541 SALHFKEGDSLKIALHAHTTDRIL 564
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 23.5 bits (49), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 127 FPFDVVVLGMGI---DGHTASFFPKGDTLSI-----ALDTHTPRSVIAIKDYTSNEQRMT 178
+PF + G+ + +G SF P + +I A++ I ++D N T
Sbjct: 20 YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
Query: 179 MTFSALHDAQFLALHIEGTQKK 200
+T H+ L +HIE Q +
Sbjct: 80 VTRLLQHNKSALIVHIEDIQDQ 101
>gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 316
Score = 23.5 bits (49), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 44 GLTPRF--FLEELSIINVDWHKVVVTL 68
G+TP + FLE++S++ V H+V+ +L
Sbjct: 38 GITPLYTQFLEQVSVLEVISHRVLWSL 64
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 22.7 bits (47), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 156 LDTHTPRSVIAIKDYTS--NEQRMTMTFSALHDAQFLAL-HIEGTQK 199
LD H P SV+ + D T+ N R F A+ L + ++GT +
Sbjct: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 427
Score = 22.7 bits (47), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 134 LGMGIDGHTASFFPKGDTLS 153
+ +G DGH + F D LS
Sbjct: 1 MNIGYDGHNSDFLENEDNLS 20
>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 22.3 bits (46), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 216 PIRAILWNAQSPLEVHWTS 234
P ILW +P+E W S
Sbjct: 188 PADFILWKRSTPMEPGWES 206
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,724
Number of Sequences: 1233
Number of extensions: 5594
Number of successful extensions: 22
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 12
length of query: 234
length of database: 328,796
effective HSP length: 71
effective length of query: 163
effective length of database: 241,253
effective search space: 39324239
effective search space used: 39324239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)