HHsearch alignment for GI: 254780506 and conserved domain: COG1004

Probab=90.48  E-value=1.7  Score=24.35  Aligned_cols=85  Identities=21%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCC---------CHHHHHHHHHHHCCCEEECCC--------------CCCCHHHH
Q ss_conf             9999999986787720012899616442---------034689999862045331246--------------76534776
Q gi|254780506|r  145 AGAILLIEQFKGCDLSGQHAVVIGRSNL---------FGKPMGQLLLSRNATVTMAHS--------------KTKNLPEI  201 (306)
Q Consensus       145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~---------VG~Pla~lL~~~~atVti~hs--------------~T~~l~~~  201 (306)
T Consensus       296 ~~~~~~i~~~~~--l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~  373 (414)
T COG1004         296 DKLAEKILNHLG--LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEA  373 (414)
T ss_pred             HHHHHHHHHHCC--CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEECCHHHH
T ss_conf             999999998468--778679999874169984200031799999999779989997825437777307871674899999


Q ss_pred             HHHCCEEEEECCCCCCCCCCCCC---CCCEEEE
Q ss_conf             42235736522443212201047---6626998
Q gi|254780506|r  202 CRTADILVVAVGRPRMVQVDWIK---TGSLVID  231 (306)
Q Consensus       202 ~~~ADivIsAvG~p~~i~~~~vk---~gavvID  231 (306)
T Consensus       374 ~~~aDaivi~tew~ef~~~d~~~~~m~~~~v~D  406 (414)
T COG1004         374 LKGADAIVINTEWDEFRDLDFEKLLMKTPVVID  406 (414)
T ss_pred             HHHCCEEEEECCHHHHHCCCHHHHHCCCCEEEE
T ss_conf             840989999555798755575665025877986