HHsearch alignment for GI: 254780506 and conserved domain: COG3288

Probab=92.00  E-value=0.11  Score=32.52  Aligned_cols=85  Identities=20%  Similarity=0.357  Sum_probs=47.0

Q ss_pred             HHHHHHHCCEEEEEC---CC--CCCCCCCCC---CCCCEEEEEEEEECCCCC-CCCCEEECCCCHHHHHHCCEECCCCCC
Q ss_conf             477642235736522---44--321220104---766269983111112676-688568417756787314400898698
Q gi|254780506|r  198 LPEICRTADILVVAV---GR--PRMVQVDWI---KTGSLVIDVGINRINSPQ-LGKTVLVGDVADECKSVVGAITPVPGG  268 (306)
Q Consensus       198 l~~~~~~ADivIsAv---G~--p~~i~~~~v---k~gavvIDvGi~~~~~~~-~~~~~~~GDvd~~~~~~a~~iTPVPGG  268 (306)
T Consensus       238 ~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~--~~gV--~iig~~nlp~r  313 (356)
T COG3288         238 VAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVT--KNGV--KIIGYTNLPGR  313 (356)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCCCEEE--ECCE--EEEEECCCCHH
T ss_conf             9988447888998144589987435279999744899689981322289865566980787--4786--99964576111


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             686899999999999999
Q gi|254780506|r  269 VGPMTIAMLMANTVIAAY  286 (306)
Q Consensus       269 VGp~Tva~L~~N~v~aa~  286 (306)
T Consensus       314 ~a~~aS~LYa~Nl~~~l~  331 (356)
T COG3288         314 LAAQASQLYATNLVNLLK  331 (356)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             022588999987999999