HHsearch alignment for GI: 254780506 and conserved domain: PRK00258
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed.
Probab=98.15 E-value=0.00016 Score=52.21 Aligned_cols=224 Identities=18% Similarity=0.254 Sum_probs=136.8
Q ss_pred EECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-C
Q ss_conf 967986789999999999998397000024741112266999999852312212588834688711378898606874-3
Q gi|254780506|r 39 LVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE-K 117 (306)
Q Consensus 39 lvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~-K 117 (306)
T Consensus 10 liG~pi~hS~SP~ihn~~f~~~gl~~~Y~~~--~v~~~~l~~~i~~l~~-~~~~G~nVT~P~K~~v--~~~ld~l~~~A~ 84 (275)
T PRK00258 10 VIGNPIAHSKSPFIHNAAAKQLGLDGEYLAF--LVPLDDLEDAVRGFFA-LGGKGANVTVPFKEAA--FALADELSERAR 84 (275)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHHHHHHH-CCCCEEEECHHHHHHH--HHCCCHHHHHHH
T ss_conf 9888824130799999999986999389988--7888899999997776-6987799668989999--862460217788
Q ss_pred CHHHCCHH-H-HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCC
Q ss_conf 51321553-3-888730477887567667999999998678772001289961644203468999986204-53312467
Q gi|254780506|r 118 DVDGLHVV-N-AGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSK 194 (306)
Q Consensus 118 DVDGl~~~-N-~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~ 194 (306)
T Consensus 85 ~igavNTi~~~~g~-l~G~------NTD~~G~~~~l~~~-~~~~~~k~vlIlGaGG-aarai~~al~~~g~~~i~i~nR~ 155 (275)
T PRK00258 85 LAGAVNTLVLEDGR-LIGD------NTDGIGFVRDLERL-GLDLKGKRILLLGAGG-AARAVILPLLELGVAEITIVNRT 155 (275)
T ss_pred HHCCEEEEEEECCE-EEEE------ECCHHHHHHHHHHH-CCCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECC
T ss_conf 74554589955998-9998------36778999999984-8785687599988871-07999999997699989999589
Q ss_pred C-------------------CCHHHHHHHCCEEEEECCC---CC--CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECC
Q ss_conf 6-------------------5347764223573652244---32--1220104766269983111112676688568417
Q gi|254780506|r 195 T-------------------KNLPEICRTADILVVAVGR---PR--MVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGD 250 (306)
Q Consensus 195 T-------------------~~l~~~~~~ADivIsAvG~---p~--~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GD 250 (306)
T Consensus 156 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiInaTp~Gm~~~~~~~~~~~~~~~~~v~D~~Y~P~~T----------- 224 (275)
T PRK00258 156 VERAEELAELFGEGVQALGLDELAGELADFDLIINTTSAGMSGELPPLPASLLRPGTVVYDMIYGPLPT----------- 224 (275)
T ss_pred HHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCC-----------
T ss_conf 999999999835676275378754304457779965777777886511387648886699866579999-----------
Q ss_pred CCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 75678731440089869868689999999999999998688985
Q gi|254780506|r 251 VADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 251 vd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
T Consensus 225 -~ll~~a~~~G~~~i~G------l~Mli~Qa~~qf~iwtg~~~~ 261 (275)
T PRK00258 225 -PFLAWAKAQGARTVDG------LGMLVHQAAEAFELWTGVRPD 261 (275)
T ss_pred -HHHHHHHHCCCEEECC------HHHHHHHHHHHHHHHHCCCCC
T ss_conf -9999999882948577------999999999999998499999