HHsearch alignment for GI: 254780506 and conserved domain: PRK09526
>PRK09526 lacI lac repressor; Reviewed.
Probab=90.53 E-value=1.7 Score=24.37 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=60.4
Q ss_pred EEECHHH-HHHHHHHHHHHHHHHHHHHCCCCC------------EEEEEEECC--CHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 5005389-999999999999999998369997------------599999679--8678999999999999839700002
Q gi|254780506|r 3 SLIDGKV-VASVLTDKIAESVAFLKKETGVQV------------GLAVVLVGN--DPASCSYVSAKTRMAKHCGFHSVQY 67 (306)
Q Consensus 3 ~iLdGk~-iA~~i~~~lk~~i~~l~~~~g~~P------------~LavIlvGd--dpaS~~Yv~~K~K~a~~lGI~~~~~ 67 (306)
T Consensus 24 rvLn~~~~vs~~tr~rV~~~a~el----gY~pn~~Ar~l~~~~t~~Igli~~~i~~~~~~~~~~~i~~~~~~~gy~~~l~ 99 (342)
T PRK09526 24 RVLNQASHVSAKTREKVEAAMAEL----NYVPNRVAQQLAGKQSLTIGLVTTSLALHAPSQIAAAIKSRADQLGYSVVIS 99 (342)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 997897999999999999999983----9997888887513887279999346665247999999999999869969999
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH
Q ss_conf 4741112266999999852312212588834688711
Q gi|254780506|r 68 NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV 104 (306)
Q Consensus 68 ~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i 104 (306)
T Consensus 100 ~~~-~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~~ 134 (342)
T PRK09526 100 MVE-RSGVEACQAAVNELLA-QRVSGVIINVPLEDAD 134 (342)
T ss_pred ECC-CCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHH
T ss_conf 688-9808999999999996-6988899956888448