HHsearch alignment for GI: 254780506 and conserved domain: PRK12548
>PRK12548 shikimate 5-dehydrogenase; Provisional.
Probab=98.03 E-value=0.00069 Score=47.90 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-CCHHHCCHH--
Q ss_conf 99999999998397000024741112266999999852312212588834688711378898606874-351321553--
Q gi|254780506|r 49 YVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE-KDVDGLHVV-- 125 (306)
Q Consensus 49 Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~-KDVDGl~~~-- 125 (306)
T Consensus 24 SP~ihn~~~~~~gi~~~Y~~~--~v~~~~l~~~~~~~~-~~~~~G~nVTiP~K~~v--~~~~d~l~~~A~~iGAvNTi~~ 98 (289)
T PRK12548 24 SPAMYNYSFQKAGLDYAYLAF--DVPKEKVADAITAIR-TFNMRGANVTMPCKSEV--AKLMDELSPAARIIGAVNTIVN 98 (289)
T ss_pred CHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHHHHHH-HCCCCEEEECHHHHHHH--HHHHCCCCHHHHHHCCEEEEEC
T ss_conf 499999999986999299978--778889999999887-47998899726139999--9975649988998405247773
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCC------CC--
Q ss_conf 38887304778875676679999999986787720012899616442034689999862045-3312467------65--
Q gi|254780506|r 126 NAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSK------TK-- 196 (306)
Q Consensus 126 N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~------T~-- 196 (306)
T Consensus 99 ~~g~l-~G~NT------D~~Gf~~~L~~~-~~~~~~k~vlIlGaGG-aa~ai~~~l~~~g~~~i~i~nr~~~~~~ra~~~ 169 (289)
T PRK12548 99 DDGKL-TGHIT------DGLGFVRNLREH-GVDVKGKKLTIIGAGG-AATAIQVQCALDGAKEITIFNIKDDFYERAEQT 169 (289)
T ss_pred CCCEE-EEECC------CHHHHHHHHHHH-CCCCCCCEEEEEECCH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf 39989-98758------779999999980-9996777479995216-799999999976998899996881488999999
Q ss_pred ----------------------CHHHHHHHCCEEEEEC--CC-C-----CCCCCCCCCCCCEEEEEEEEECCCCCCCCCE
Q ss_conf ----------------------3477642235736522--44-3-----2122010476626998311111267668856
Q gi|254780506|r 197 ----------------------NLPEICRTADILVVAV--GR-P-----RMVQVDWIKTGSLVIDVGINRINSPQLGKTV 246 (306)
Q Consensus 197 ----------------------~l~~~~~~ADivIsAv--G~-p-----~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~ 246 (306)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliINaT~~Gm~p~~~~~~~~~~~~~~~~~~v~D~vY~P~~T------- 242 (289)
T PRK12548 170 VAKIKEEVPACIVHVYDLNDTEKLNAEIATSDILVNATLVGMHPNEDETPIKDTSVFRKDLVVADTVYNPKKT------- 242 (289)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC-------
T ss_conf 9999845877647985143166665543226744533565668775568887866738897899831388478-------
Q ss_pred EECCCCH-HHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8417756-7873144008986986868999999999999999868898555
Q gi|254780506|r 247 LVGDVAD-ECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKF 296 (306)
Q Consensus 247 ~~GDvd~-~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~~~ 296 (306)
T Consensus 243 -----~ll~~A~~-~G~~~i~G------l~MLv~Qa~~~FelwtG~~~p~~ 281 (289)
T PRK12548 243 -----KLLEDAEA-AGCKTVGG------LGMLLWQGAEAYKLFTGKDMPVS 281 (289)
T ss_pred -----HHHHHHHH-CCCEEECH------HHHHHHHHHHHHHHHHCCCCCHH
T ss_conf -----99999998-82968572------99999999999999839999999