HHsearch alignment for GI: 254780506 and conserved domain: PRK12549
>PRK12549 shikimate 5-dehydrogenase; Reviewed.
Probab=97.67 E-value=0.006 Score=41.37 Aligned_cols=215 Identities=17% Similarity=0.169 Sum_probs=133.2
Q ss_pred HHHHHHHHHCCCCEEECCC--C-CCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-CCHHHCCHH-
Q ss_conf 9999999983970000247--4-1112266999999852312212588834688711378898606874-351321553-
Q gi|254780506|r 51 SAKTRMAKHCGFHSVQYNF--P-VDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE-KDVDGLHVV- 125 (306)
Q Consensus 51 ~~K~K~a~~lGI~~~~~~l--~-~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~-KDVDGl~~~- 125 (306)
T Consensus 22 ~iHn~~~~~lgl~~~Y~~~d~~~~~~~~~~l~~~~~~~~-~~~~~G~nVTiP~K~~~--~~~~d~l~~~A~~igAvNTi~ 98 (284)
T PRK12549 22 AMHEAEGDAQGLRYVYRLIDLDALGLSADALPELLDAAE-RMGFNGLNITHPCKQAV--IPLLDELSDDARALGAVNTVV 98 (284)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCHHHH--HHHHHHHHHHHHHHCCEEEEE
T ss_conf 999999998799809997532121399789999999987-68998899811749999--999705237899856521489
Q ss_pred -HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCC--------
Q ss_conf -3888730477887567667999999998678772001289961644203468999986204-533124676--------
Q gi|254780506|r 126 -NAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKT-------- 195 (306)
Q Consensus 126 -N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T-------- 195 (306)
T Consensus 99 ~~~g~l-~G~NTD------~~G~~~~l~~~-~~~~~~~~vlilGaGG-aa~ai~~al~~~g~~~i~I~nR~~~r~~~l~~ 169 (284)
T PRK12549 99 FRDGRR-IGHNTD------WSGFAEGFRRG-LPDASLERVVQLGAGG-AGAAVAHALLTLGVERLTLFDVDPARAQALAD 169 (284)
T ss_pred EECCEE-EEEECC------HHHHHHHHHHH-CCCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 759989-998066------68899999974-6453557189965661-68999999997699989999798899999999
Q ss_pred --------------CCHHHHHHHCCEEEEECC-----CCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHHH
Q ss_conf --------------534776422357365224-----4321-22010476626998311111267668856841775678
Q gi|254780506|r 196 --------------KNLPEICRTADILVVAVG-----RPRM-VQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADEC 255 (306)
Q Consensus 196 --------------~~l~~~~~~ADivIsAvG-----~p~~-i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~ 255 (306)
T Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~~d~iINaTp~Gm~~~~~~p~~~~~l~~~~~v~D~vY~P~~T------------~ll~ 237 (284)
T PRK12549 170 ELNARFPAARVTAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET------------ELLR 237 (284)
T ss_pred HHHHHCCCCEEEECHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCC------------HHHH
T ss_conf 9986579863764167676542138266578988778999999988918787567612077457------------9999
Q ss_pred HHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7314400898698686899999999999999986889855
Q gi|254780506|r 256 KSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPK 295 (306)
Q Consensus 256 ~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~~ 295 (306)
T Consensus 238 ~A~~~G~~~i~G------l~MLv~Qa~~qfelwtG~~~~~ 271 (284)
T PRK12549 238 AARALGCRTLDG------GGMAVFQAVDAFELFTGREPDA 271 (284)
T ss_pred HHHHCCCEEECC------HHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999885907783------9999999999999970999999