HHsearch alignment for GI: 254780506 and conserved domain: PRK12550
>PRK12550 shikimate 5-dehydrogenase; Reviewed.
Probab=97.85 E-value=0.0013 Score=46.04 Aligned_cols=216 Identities=17% Similarity=0.177 Sum_probs=140.8
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-------H-HHHH
Q ss_conf 9967986789999999999998397000024741112266999999852312212588834688711-------3-7889
Q gi|254780506|r 38 VLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV-------S-EQSI 109 (306)
Q Consensus 38 IlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i-------d-~~~i 109 (306)
T Consensus 13 ~~~~~~p~~~~~-~mHN~af~~lgl~~~Y~~~~----~~~l~~~i~~lr-~~~~~G~nVTiP~K~~i~~~lD~ld~~A~~ 86 (272)
T PRK12550 13 ISLAARPSNFGT-RFHNYLYEALGLNFLYKAFT----TTDLTAAIGGVR-ALGIRGCAVSMPFKEACIPLVDELDPSAKA 86 (272)
T ss_pred EEECCCCCCCCH-HHHHHHHHHCCCCEEEEEEC----HHHHHHHHHHHH-HCCCCEEEECCCCHHHHHHHHCCCCHHHHH
T ss_conf 994469886778-99999999879992998637----877999999887-579988998643699999985436888997
Q ss_pred HHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CE
Q ss_conf 86068743513215533888730477887567667999999998678772001289961644203468999986204-53
Q gi|254780506|r 110 IQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TV 188 (306)
Q Consensus 110 ~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tV 188 (306)
T Consensus 87 iGAVNTiv~~~g-------~-l~G~NTD------~~G~~~~l~~~-~~~-~~~~~lilGaGG-aarai~~aL~~~G~~~i 149 (272)
T PRK12550 87 IESVNTIVNTDG-------H-LKAYNTD------YIAIAQLLEEY-QVP-PDAVVALRGSGG-MAKAVAAALRDAGFTDG 149 (272)
T ss_pred HCCEEEEEEECC-------E-EEEEECC------HHHHHHHHHHC-CCC-CCCEEEEECCCH-HHHHHHHHHHHCCCCEE
T ss_conf 275547995599-------8-9999377------89999999970-888-677389973623-38999999997699879
Q ss_pred EECCCCCCC---HH----------HHHHHCCEEEEECCC-----CC----CCCCCCCCCCCEEEEEEEEECCCCCCCCCE
Q ss_conf 312467653---47----------764223573652244-----32----122010476626998311111267668856
Q gi|254780506|r 189 TMAHSKTKN---LP----------EICRTADILVVAVGR-----PR----MVQVDWIKTGSLVIDVGINRINSPQLGKTV 246 (306)
Q Consensus 189 ti~hs~T~~---l~----------~~~~~ADivIsAvG~-----p~----~i~~~~vk~gavvIDvGi~~~~~~~~~~~~ 246 (306)
T Consensus 150 ~I~nR~~~~a~~L~~~~~~~~~~~~~~~~~dliINaTpvGm~~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~-------- 221 (272)
T PRK12550 150 TIVARNEKTGKALAELYGYEWRPDLGGIEADLLVNVTPIGMAGGPEADKLAFSEAEIDAASVVFDVVALPAE-------- 221 (272)
T ss_pred EEEECCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCC--------
T ss_conf 999899899999998739733464334668979966766557897534588997885888789997438987--------
Q ss_pred EECCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 841775678731440089869868689999999999999998688985
Q gi|254780506|r 247 LVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 247 ~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
T Consensus 222 ----T~ll~~A~~~G~~~i~G------l~MLi~Qa~~qF~lwTG~~p~ 259 (272)
T PRK12550 222 ----TPLIRYARARGKTVITG------AEVIALQAVEQFVLYTGVRPT 259 (272)
T ss_pred ----CHHHHHHHHCCCCEECC------HHHHHHHHHHHHHHHHCCCCC
T ss_conf ----89999999884936276------999999999999997099999