HHsearch alignment for GI: 254780506 and conserved domain: TIGR00658
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=94.48 E-value=0.19 Score=30.96 Aligned_cols=150 Identities=21% Similarity=0.327 Sum_probs=86.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEC-----CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 5999996798678999999999999839700002-----47411122669999998523122125888346887113788
Q gi|254780506|r 34 GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQY-----NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQS 108 (306)
Q Consensus 34 ~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~-----~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~ 108 (306)
T Consensus 47 tlAliF--eK~STRTRvSFEv-A~y~lGg~~lyL~~~~~QlG~---gEsi~DTARVL--sRyVD~I~~R--~~~h~~v~~ 116 (341)
T TIGR00658 47 TLALIF--EKPSTRTRVSFEV-AAYQLGGQPLYLNPSDLQLGR---GESIKDTARVL--SRYVDGIMAR--VYKHEDVEE 116 (341)
T ss_pred CEEEEE--ECCCCCCCCCHHH-HHHHCCCCEEECCCCCCEECC---CCCCCCHHHHH--CCEEEEEEEE--CCCHHHHHH
T ss_conf 166665--2698652100779-998649821224875320036---88700011020--3156567773--255378999
Q ss_pred HHH--HCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCC-CCCCCC--------EEEEECCC-CCCHH
Q ss_conf 986--06874351321553388873047788756766799-9999998678-772001--------28996164-42034
Q gi|254780506|r 109 IIQ--SIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKG-CDLSGQ--------HAVVIGRS-NLFGK 175 (306)
Q Consensus 109 i~~--~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~-i~l~Gk--------~vvVvGrs-~~VG~ 175 (306)
T Consensus 117 lA~yasVPV----------------INgLtD~~HPcQ~LADllTI~E~~-g~~~l~g~nkGinsklk~vy~GDgRNNVcn 179 (341)
T TIGR00658 117 LAKYASVPV----------------INGLTDLFHPCQALADLLTIKEHF-GEKKLKGVNKGINSKLKVVYVGDGRNNVCN 179 (341)
T ss_pred HHHHCCCCE----------------ECCCCCCCCHHHHHHHHHHHHHHC-CCCCCCHHCCCCCCCCEEEEECCCCHHHHH
T ss_conf 985489854----------------605568552379999988898746-795600000352442168997378512688
Q ss_pred HHHHHHH--HHCCCEEECCCC-------------------------CCCHHHHHHHCCEEEEEC
Q ss_conf 6899998--620453312467-------------------------653477642235736522
Q gi|254780506|r 176 PMGQLLL--SRNATVTMAHSK-------------------------TKNLPEICRTADILVVAV 212 (306)
Q Consensus 176 Pla~lL~--~~~atVti~hs~-------------------------T~~l~~~~~~ADivIsAv 212 (306)
T Consensus 180 S--L~la~a~~Gm~~~v~tP~gyeP~~~~v~~A~~~a~e~Gg~~~lt~Dp~eAv~gADv~YTDV 241 (341)
T TIGR00658 180 S--LLLAAAKLGMDVVVATPEGYEPDAEIVKKAKKIAKENGGSVELTHDPKEAVKGADVIYTDV 241 (341)
T ss_pred H--HHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEEE
T ss_conf 9--9999997285478878888887878999999999717985999637798612897899741