HHsearch alignment for GI: 254780506 and conserved domain: TIGR03316
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=97.09 E-value=0.036 Score=35.94 Aligned_cols=201 Identities=16% Similarity=0.155 Sum_probs=112.1
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHH--CCCCC-----EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC---
Q ss_conf 0053899999999999999999983--69997-----5999996798678999999999999839700002474111---
Q gi|254780506|r 4 LIDGKVVASVLTDKIAESVAFLKKE--TGVQV-----GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI--- 73 (306)
Q Consensus 4 iLdGk~iA~~i~~~lk~~i~~l~~~--~g~~P-----~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~--- 73 (306)
T Consensus 6 ~L~~~dls~~ei~~ll~~A~~lK~~~~~~~~~~~L~gk~~~~lF-~epSTRTR~SF-e~A~~~LGg~~i~l~~-~~ss~~ 82 (357)
T TIGR03316 6 FILTWEWTRDELDTVLDVAFDLKRLRALNISTKLFESGLGISLF-RDNSTRTRFSF-ASAMNLLGLHAQDLDE-GKSQIG 82 (357)
T ss_pred CCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-CCCCCCHHHHH-HHHHHHCCCEEEEECC-CCCCCC
T ss_conf 28811289999999999999998776468877557898899997-38984038999-9999985995999783-224476
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH---HHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHH
Q ss_conf 226699999985231221258883468871137889---8606874351321553388873047788756766799-999
Q gi|254780506|r 74 SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSI---IQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AIL 149 (306)
Q Consensus 74 se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i---~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ 149 (306)
T Consensus 83 kGEsv~DTarvls~--y~D~IviR~~~~~~~~~~~~~e~a~~~~~-~~~~~~~~s~v--PVINal~d~~HPtQaLaDl~T 157 (357)
T TIGR03316 83 HGETVRETAEMISF--FADGIGIRDDMYIGVGNAYMREVAKYVQE-GYKDGVLEQRP--PLVNLQCDIDHPTQAMADIMT 157 (357)
T ss_pred CCCCHHHHHHHHHH--HCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCC--CEEECCCCCCCCHHHHHHHHH
T ss_conf 89887999999996--38889998243334037889999987655-44310223689--878378887783699999999
Q ss_pred HHHHHCCC-CCCCCEEEEE-------CCCCCCHHHHHHHHHHHCCCEEECCCC-------------------------CC
Q ss_conf 99986787-7200128996-------164420346899998620453312467-------------------------65
Q gi|254780506|r 150 LIEQFKGC-DLSGQHAVVI-------GRSNLFGKPMGQLLLSRNATVTMAHSK-------------------------TK 196 (306)
Q Consensus 150 ll~~y~~i-~l~Gk~vvVv-------Grs~~VG~Pla~lL~~~~atVti~hs~-------------------------T~ 196 (306)
T Consensus 158 i~e~~G~~~~l~g~~v~i~~~~~~~~g~~~~Va~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 158 LQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN 237 (357)
T ss_pred HHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99984872246777489998612556515379999999999759809997784236787999999999998199289975
Q ss_pred CHHHHHHHCCEEEEEC
Q ss_conf 3477642235736522
Q gi|254780506|r 197 NLPEICRTADILVVAV 212 (306)
Q Consensus 197 ~l~~~~~~ADivIsAv 212 (306)
T Consensus 238 d~~eav~~aDVvytd~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHHCCCCEEEECC
T ss_conf 9999956899998366