HHsearch alignment for GI: 254780506 and conserved domain: cd01078
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.15 E-value=1.4e-05 Score=59.76 Aligned_cols=132 Identities=24% Similarity=0.304 Sum_probs=86.0
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC--------------------------CCHHHHH
Q ss_conf 99998678772001289961644203468999986204533124676--------------------------5347764
Q gi|254780506|r 149 LLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT--------------------------KNLPEIC 202 (306)
Q Consensus 149 ~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T--------------------------~~l~~~~ 202 (306)
T Consensus 17 kal~~~-g~dl~g~~~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l 95 (194)
T cd01078 17 KALELM-GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAI 95 (194)
T ss_pred HHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999982-9986798899985885789999999998399799995878889999999999709873113578877899774
Q ss_pred HHCCEEEEECCCCC---CCCCCC-CCCCCEEEEEEEEECCCCCCCCCEEEC-CCCHHHHHHCCEECCCCCCCCHHHHHHH
Q ss_conf 22357365224432---122010-476626998311111267668856841-7756787314400898698686899999
Q gi|254780506|r 203 RTADILVVAVGRPR---MVQVDW-IKTGSLVIDVGINRINSPQLGKTVLVG-DVADECKSVVGAITPVPGGVGPMTIAML 277 (306)
Q Consensus 203 ~~ADivIsAvG~p~---~i~~~~-vk~gavvIDvGi~~~~~~~~~~~~~~G-Dvd~~~~~~a~~iTPVPGGVGp~Tva~L 277 (306)
T Consensus 96 ~~adiV~~a~-aAGv~~~~~~~~~~k~l~Vv~DVN--AvPP~--G---i~Gv~~~D~~~~i~-----G~~~~Gal~iG~~ 162 (194)
T cd01078 96 KGADVVFAAG-AAGVELLEKLAWAPKPLAVAADVN--AVPPV--G---IEGIDVPDKGVDRE-----GKVPYGAIGVGGL 162 (194)
T ss_pred CCCCEEEECC-HHHHHHHHHHHHCCCCCEEEEECC--CCCCC--C---CCCCCCCCCCEECC-----CCEEECCCCCCHH
T ss_conf 6698999642-777888788885088865998658--99985--5---01103366734507-----9725643112421
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 99999999998688985
Q gi|254780506|r 278 MANTVIAAYRSLGMKSP 294 (306)
Q Consensus 278 ~~N~v~aa~~~~~~~~~ 294 (306)
T Consensus 163 K~k~~~~~~~~m~~s~~ 179 (194)
T cd01078 163 KMKTHRACIAKLFESNP 179 (194)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 69999999999963798