Query gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 306
No_of_seqs 145 out of 2341
Neff 5.9
Searched_HMMs 39220
Date Sun May 29 23:20:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780506.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10792 bifunctional 5,10-met 100.0 0 0 727.7 29.7 281 2-290 3-284 (288)
2 COG0190 FolD 5,10-methylene-te 100.0 0 0 719.7 29.0 281 3-291 1-282 (283)
3 KOG4230 consensus 100.0 0 0 699.0 24.8 304 1-305 2-308 (935)
4 KOG0089 consensus 100.0 0 0 599.6 25.0 289 1-290 7-307 (309)
5 cd01080 NAD_bind_m-THF_DH_Cycl 100.0 0 0 459.3 15.2 167 115-286 1-168 (168)
6 pfam02882 THF_DHG_CYH_C Tetrah 100.0 0 0 430.8 14.8 158 123-288 1-159 (159)
7 cd01079 NAD_bind_m-THF_DH NAD 100.0 0 0 378.6 14.7 160 115-290 1-197 (197)
8 cd05212 NAD_bind_m-THF_DH_Cycl 100.0 0 0 358.9 12.2 139 134-286 2-140 (140)
9 pfam00763 THF_DHG_CYH Tetrahyd 100.0 2.8E-33 7.2E-38 252.2 13.3 117 3-120 1-117 (117)
10 PRK08306 dipicolinate synthase 98.8 1.1E-07 2.9E-12 74.2 10.4 223 39-284 7-284 (296)
11 TIGR02853 spore_dpaA dipicolin 98.5 1.3E-06 3.4E-11 66.8 10.4 128 140-283 132-283 (288)
12 pfam05221 AdoHcyase S-adenosyl 98.5 4.6E-07 1.2E-11 70.0 7.7 92 143-235 192-299 (430)
13 cd00401 AdoHcyase S-adenosyl-L 98.5 4E-07 1E-11 70.4 7.3 92 143-235 184-291 (413)
14 PRK00045 hemA glutamyl-tRNA re 98.5 5E-07 1.3E-11 69.7 7.5 97 143-241 165-288 (429)
15 pfam00670 AdoHcyase_NAD S-aden 98.5 4.2E-07 1.1E-11 70.3 6.5 83 152-235 14-112 (162)
16 pfam01488 Shikimate_DH Shikima 98.5 4.6E-07 1.2E-11 70.0 6.2 92 152-258 4-120 (134)
17 cd05191 NAD_bind_amino_acid_DH 98.4 5.6E-07 1.4E-11 69.4 6.2 78 142-232 1-85 (86)
18 PTZ00075 S-adenosyl-L-homocyst 98.4 7.3E-07 1.9E-11 68.6 6.5 92 143-235 236-343 (476)
19 PRK05476 S-adenosyl-L-homocyst 98.4 7E-07 1.8E-11 68.7 6.3 88 147-235 194-297 (427)
20 cd05213 NAD_bind_Glutamyl_tRNA 98.3 3.6E-06 9.3E-11 63.7 8.2 93 143-237 161-277 (311)
21 PRK13940 glutamyl-tRNA reducta 98.3 6E-06 1.5E-10 62.2 8.6 97 143-241 164-281 (414)
22 COG0373 HemA Glutamyl-tRNA red 98.2 5E-06 1.3E-10 62.8 6.9 149 74-241 109-282 (414)
23 TIGR01035 hemA glutamyl-tRNA r 98.2 8.7E-06 2.2E-10 61.1 7.4 171 36-238 89-298 (436)
24 PRK00258 aroE shikimate 5-dehy 98.1 0.00016 4.2E-09 52.2 13.6 224 39-294 10-261 (275)
25 cd01078 NAD_bind_H4MPT_DH NADP 98.1 1.4E-05 3.4E-10 59.8 8.0 132 149-294 17-179 (194)
26 PRK12548 shikimate 5-dehydroge 98.0 0.00069 1.7E-08 47.9 14.9 215 49-296 24-281 (289)
27 PRK12749 quinate/shikimate deh 98.0 0.00058 1.5E-08 48.4 13.6 214 51-294 24-276 (288)
28 COG0499 SAM1 S-adenosylhomocys 98.0 2.3E-05 5.8E-10 58.2 6.3 80 153-233 201-296 (420)
29 PRK12550 shikimate 5-dehydroge 97.8 0.0013 3.2E-08 46.0 13.5 216 38-294 13-259 (272)
30 TIGR00936 ahcY adenosylhomocys 97.8 3E-05 7.5E-10 57.4 5.0 80 155-235 205-300 (422)
31 PRK00257 erythronate-4-phospha 97.8 0.001 2.6E-08 46.7 12.7 146 151-301 106-290 (379)
32 COG0686 Ald Alanine dehydrogen 97.8 5E-05 1.3E-09 55.8 6.0 121 160-281 167-316 (371)
33 pfam01262 AlaDh_PNT_C Alanine 97.7 7.2E-05 1.8E-09 54.7 5.1 77 159-236 18-124 (150)
34 PRK12549 shikimate 5-dehydroge 97.7 0.006 1.5E-07 41.4 14.7 215 51-295 22-271 (284)
35 PRK09310 aroDE bifunctional 3- 97.6 0.0014 3.7E-08 45.6 11.1 205 52-292 233-457 (477)
36 pfam02826 2-Hacid_dh_C D-isome 97.6 0.00024 6.1E-09 51.1 6.7 79 155-234 30-126 (176)
37 PRK03515 ornithine carbamoyltr 97.6 0.0096 2.5E-07 39.9 14.7 155 37-210 48-231 (334)
38 KOG1370 consensus 97.4 0.00033 8.5E-09 50.1 5.8 98 138-237 192-305 (434)
39 pfam02423 OCD_Mu_crystall Orni 97.4 0.00059 1.5E-08 48.4 6.9 90 139-236 134-227 (312)
40 cd01065 NAD_bind_Shikimate_DH 97.4 0.0031 7.9E-08 43.3 10.4 126 144-289 3-154 (155)
41 COG0111 SerA Phosphoglycerate 97.4 0.00058 1.5E-08 48.4 6.4 137 154-291 135-308 (324)
42 PRK12562 ornithine carbamoyltr 97.3 0.017 4.4E-07 38.1 13.5 186 5-211 10-232 (334)
43 PRK01713 ornithine carbamoyltr 97.3 0.015 3.7E-07 38.7 12.9 154 36-210 49-231 (334)
44 PRK09424 pntA NAD(P) transhydr 97.3 0.00056 1.4E-08 48.5 5.5 125 159-290 163-339 (510)
45 PRK02102 ornithine carbamoyltr 97.3 0.012 3.2E-07 39.1 12.4 153 35-211 48-231 (331)
46 PRK06823 ornithine cyclodeamin 97.2 0.0011 2.7E-08 46.6 5.8 91 138-236 132-225 (315)
47 COG0169 AroE Shikimate 5-dehyd 97.1 0.032 8.2E-07 36.3 13.5 209 49-294 21-269 (283)
48 PRK08291 ornithine cyclodeamin 97.1 0.0029 7.4E-08 43.6 7.7 72 161-236 157-230 (330)
49 PRK13243 glyoxylate reductase; 97.1 0.0018 4.5E-08 45.0 6.5 219 63-294 24-317 (333)
50 PRK08605 D-lactate dehydrogena 97.1 0.015 3.9E-07 38.5 11.2 177 40-235 7-238 (332)
51 TIGR03316 ygeW probable carbam 97.1 0.036 9.2E-07 35.9 13.8 201 4-212 6-253 (357)
52 PRK02255 putrescine carbamoylt 97.1 0.037 9.4E-07 35.9 15.3 187 4-210 7-229 (341)
53 PRK06487 glycerate dehydrogena 97.1 0.0019 4.9E-08 44.8 6.2 212 61-290 25-309 (317)
54 COG5322 Predicted dehydrogenas 96.9 0.0034 8.7E-08 43.1 6.5 149 88-236 68-264 (351)
55 PRK01438 murD UDP-N-acetylmura 96.9 0.0042 1.1E-07 42.4 6.6 30 158-190 145-175 (481)
56 PRK12480 D-lactate dehydrogena 96.8 0.0041 1E-07 42.5 6.3 79 156-235 141-236 (330)
57 PRK08410 2-hydroxyacid dehydro 96.8 0.0041 1E-07 42.5 6.2 79 158-237 142-236 (311)
58 PRK04284 ornithine carbamoyltr 96.8 0.06 1.5E-06 34.4 13.4 149 42-210 53-230 (332)
59 PRK06436 glycerate dehydrogena 96.8 0.0047 1.2E-07 42.1 6.3 80 157-237 118-213 (303)
60 PRK06141 ornithine cyclodeamin 96.8 0.0048 1.2E-07 42.0 6.3 72 161-236 150-222 (313)
61 PRK06199 ornithine cyclodeamin 96.7 0.0066 1.7E-07 41.1 6.8 42 197-238 216-264 (379)
62 KOG0069 consensus 96.7 0.0047 1.2E-07 42.1 6.0 78 156-235 157-255 (336)
63 PRK06932 glycerate dehydrogena 96.7 0.0048 1.2E-07 42.1 5.9 159 63-236 24-236 (314)
64 PRK07589 ornithine cyclodeamin 96.6 0.0072 1.8E-07 40.8 6.1 70 162-235 155-227 (346)
65 PRK13581 D-3-phosphoglycerate 96.6 0.007 1.8E-07 40.9 6.0 204 70-289 26-297 (524)
66 COG1052 LdhA Lactate dehydroge 96.5 0.0099 2.5E-07 39.8 6.4 225 57-294 16-317 (324)
67 PRK00779 ornithine carbamoyltr 96.5 0.1 2.6E-06 32.8 14.9 185 4-211 8-225 (308)
68 pfam03446 NAD_binding_2 NAD bi 96.4 0.0082 2.1E-07 40.4 5.6 76 162-238 2-100 (163)
69 PRK07574 formate dehydrogenase 96.4 0.011 2.9E-07 39.4 6.3 136 156-292 187-360 (385)
70 PRK00856 pyrB aspartate carbam 96.4 0.11 2.9E-06 32.5 15.3 188 2-210 7-219 (304)
71 PRK06407 ornithine cyclodeamin 96.3 0.025 6.4E-07 37.1 7.7 72 162-237 144-217 (302)
72 PRK11559 garR tartronate semia 96.3 0.012 3.2E-07 39.2 5.8 124 162-286 2-181 (295)
73 PRK11790 D-3-phosphoglycerate 96.2 0.017 4.3E-07 38.2 6.1 168 57-236 27-242 (409)
74 TIGR03026 NDP-sugDHase nucleot 96.1 0.1 2.6E-06 32.8 9.9 87 145-232 298-409 (411)
75 PRK03806 murD UDP-N-acetylmura 96.1 0.02 5.1E-07 37.7 6.0 20 160-182 130-149 (438)
76 PRK01390 murD UDP-N-acetylmura 96.0 0.041 1.1E-06 35.5 7.5 19 160-181 139-157 (457)
77 PRK06046 alanine dehydrogenase 96.0 0.039 9.9E-07 35.7 7.1 70 162-236 155-226 (326)
78 PRK03369 murD UDP-N-acetylmura 95.9 0.03 7.6E-07 36.5 6.4 20 160-182 142-161 (487)
79 PRK08618 ornithine cyclodeamin 95.9 0.047 1.2E-06 35.1 7.4 69 162-235 153-223 (325)
80 PRK07232 malic enzyme; Reviewe 95.8 0.06 1.5E-06 34.4 7.7 167 45-231 85-283 (753)
81 PRK12862 malic enzyme; Reviewe 95.8 0.066 1.7E-06 34.1 7.8 168 45-232 91-290 (761)
82 COG0281 SfcA Malic enzyme [Ene 95.7 0.11 2.8E-06 32.6 8.6 163 45-226 98-290 (432)
83 PRK04965 nitric oxide reductas 95.7 0.048 1.2E-06 35.1 6.7 34 160-194 140-173 (378)
84 cd01075 NAD_bind_Leu_Phe_Val_D 95.7 0.032 8.3E-07 36.3 5.7 83 140-224 2-104 (200)
85 PRK11199 tyrA bifunctional cho 95.6 0.043 1.1E-06 35.4 6.2 73 160-234 97-176 (374)
86 PRK06718 precorrin-2 dehydroge 95.6 0.028 7.1E-07 36.7 5.2 109 157-280 6-139 (202)
87 COG0287 TyrA Prephenate dehydr 95.5 0.032 8.1E-07 36.3 5.2 74 161-236 3-101 (279)
88 PRK07424 bifunctional sterol d 95.5 0.028 7.2E-07 36.7 4.9 81 156-236 175-259 (410)
89 PRK09599 6-phosphogluconate de 95.4 0.035 8.9E-07 36.0 5.2 13 93-105 62-74 (301)
90 PRK06719 precorrin-2 dehydroge 95.4 0.035 8.9E-07 36.1 5.2 60 157-217 9-83 (157)
91 PRK07200 aspartate/ornithine c 95.4 0.074 1.9E-06 33.8 6.7 163 37-213 62-271 (395)
92 PRK08655 prephenate dehydrogen 95.4 0.045 1.1E-06 35.3 5.6 33 159-191 126-161 (441)
93 COG2084 MmsB 3-hydroxyisobutyr 95.3 0.046 1.2E-06 35.2 5.5 72 163-235 2-97 (286)
94 PRK00676 hemA glutamyl-tRNA re 95.3 0.14 3.6E-06 31.8 8.0 105 145-253 160-282 (338)
95 PRK02472 murD UDP-N-acetylmura 95.3 0.051 1.3E-06 34.9 5.6 22 160-184 137-158 (450)
96 TIGR03026 NDP-sugDHase nucleot 95.3 0.044 1.1E-06 35.3 5.2 20 208-227 239-258 (411)
97 COG1648 CysG Siroheme synthase 95.1 0.069 1.8E-06 34.0 6.0 60 157-217 8-85 (210)
98 PRK01710 murD UDP-N-acetylmura 95.1 0.059 1.5E-06 34.5 5.6 28 160-190 142-170 (458)
99 PRK04523 N-acetylornithine car 95.1 0.36 9.1E-06 29.0 11.0 193 1-211 3-251 (335)
100 PRK02006 murD UDP-N-acetylmura 95.1 0.1 2.5E-06 32.9 6.6 22 159-183 146-167 (501)
101 PRK04308 murD UDP-N-acetylmura 95.1 0.097 2.5E-06 32.9 6.6 21 160-183 135-155 (445)
102 pfam01210 NAD_Gly3P_dh_N NAD-d 95.1 0.056 1.4E-06 34.6 5.3 70 162-232 1-103 (159)
103 PRK07340 ornithine cyclodeamin 95.1 0.076 1.9E-06 33.7 6.0 71 162-237 151-221 (304)
104 PRK06545 prephenate dehydrogen 95.0 0.048 1.2E-06 35.1 4.8 33 159-191 135-170 (357)
105 PRK07502 cyclohexadienyl dehyd 95.0 0.047 1.2E-06 35.2 4.7 51 138-192 119-178 (307)
106 pfam03721 UDPG_MGDP_dh_N UDP-g 95.0 0.046 1.2E-06 35.2 4.7 30 162-192 1-30 (185)
107 PRK00141 murD UDP-N-acetylmura 95.0 0.097 2.5E-06 33.0 6.3 30 158-190 146-176 (476)
108 COG2423 Predicted ornithine cy 94.9 0.086 2.2E-06 33.3 5.8 72 160-235 154-227 (330)
109 COG2085 Predicted dinucleotide 94.8 0.07 1.8E-06 33.9 5.3 71 162-234 2-94 (211)
110 PRK08192 aspartate carbamoyltr 94.8 0.43 1.1E-05 28.4 14.7 150 42-210 52-232 (338)
111 COG0078 ArgF Ornithine carbamo 94.8 0.15 3.9E-06 31.6 6.9 145 42-212 52-229 (310)
112 PRK09754 phenylpropionate diox 94.7 0.052 1.3E-06 34.8 4.3 118 160-295 143-313 (400)
113 PRK11064 wecC UDP-N-acetyl-D-m 94.7 0.097 2.5E-06 32.9 5.7 75 156-231 315-414 (415)
114 TIGR00507 aroE shikimate 5-deh 94.6 0.13 3.3E-06 32.1 6.2 207 53-292 19-269 (286)
115 PRK12861 malic enzyme; Reviewe 94.6 0.23 5.8E-06 30.4 7.4 167 45-231 86-284 (762)
116 COG0771 MurD UDP-N-acetylmuram 94.5 0.11 2.7E-06 32.7 5.6 33 161-194 7-39 (448)
117 TIGR00658 orni_carb_tr ornithi 94.5 0.19 4.8E-06 31.0 6.8 150 34-212 47-241 (341)
118 COG1748 LYS9 Saccharopine dehy 94.5 0.052 1.3E-06 34.8 3.9 54 49-108 80-133 (389)
119 TIGR02992 ectoine_eutC ectoine 94.5 0.12 3E-06 32.4 5.7 164 75-263 20-245 (326)
120 PRK06124 gluconate 5-dehydroge 94.5 0.044 1.1E-06 35.4 3.5 69 145-222 131-200 (259)
121 PRK05579 bifunctional phosphop 94.4 0.2 5.1E-06 30.8 6.7 95 127-222 152-283 (392)
122 PRK06949 short chain dehydroge 94.3 0.05 1.3E-06 35.0 3.6 161 37-224 36-205 (258)
123 TIGR03451 mycoS_dep_FDH mycoth 94.3 0.25 6.3E-06 30.1 7.1 94 139-235 156-278 (358)
124 PRK08339 short chain dehydroge 94.3 0.048 1.2E-06 35.1 3.4 30 193-223 166-195 (263)
125 PRK07041 short chain dehydroge 94.3 0.057 1.4E-06 34.6 3.7 27 194-223 157-183 (240)
126 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.052 1.3E-06 34.8 3.5 71 145-225 123-196 (253)
127 PRK05867 short chain dehydroge 94.2 0.054 1.4E-06 34.7 3.5 45 176-225 157-201 (253)
128 PRK07576 short chain dehydroge 94.2 0.053 1.3E-06 34.8 3.4 44 37-85 35-79 (260)
129 PRK06500 short chain dehydroge 94.1 0.056 1.4E-06 34.6 3.5 153 37-223 33-188 (249)
130 PRK07062 short chain dehydroge 94.1 0.06 1.5E-06 34.4 3.6 30 193-223 168-197 (265)
131 KOG0409 consensus 94.1 0.18 4.6E-06 31.1 6.1 66 157-223 31-110 (327)
132 PRK08277 D-mannonate oxidoredu 94.1 0.059 1.5E-06 34.5 3.5 31 192-223 182-212 (278)
133 cd05211 NAD_bind_Glu_Leu_Phe_V 94.1 0.13 3.2E-06 32.2 5.2 51 142-194 1-56 (217)
134 PRK08213 gluconate 5-dehydroge 94.0 0.061 1.6E-06 34.3 3.5 40 180-224 166-205 (259)
135 PRK05866 short chain dehydroge 94.0 0.055 1.4E-06 34.6 3.2 47 175-226 186-233 (290)
136 PRK04690 murD UDP-N-acetylmura 94.0 0.21 5.4E-06 30.6 6.2 31 30-60 183-219 (468)
137 PRK08217 fabG 3-ketoacyl-(acyl 93.9 0.067 1.7E-06 34.1 3.5 30 193-223 172-201 (253)
138 PRK07774 short chain dehydroge 93.9 0.068 1.7E-06 34.0 3.5 54 37-95 33-88 (250)
139 PRK05653 fabG 3-ketoacyl-(acyl 93.9 0.068 1.7E-06 34.0 3.5 156 37-223 32-192 (246)
140 KOG1494 consensus 93.9 0.057 1.4E-06 34.6 3.1 69 157-225 24-120 (345)
141 PRK06125 short chain dehydroge 93.8 0.078 2E-06 33.6 3.7 155 37-222 34-190 (259)
142 PTZ00079 NADP-specific glutama 93.8 0.57 1.4E-05 27.6 8.1 83 107-191 172-281 (469)
143 PRK07417 arogenate dehydrogena 93.8 0.11 2.8E-06 32.5 4.5 98 91-194 59-169 (280)
144 PRK07814 short chain dehydroge 93.8 0.073 1.9E-06 33.8 3.5 44 37-84 37-80 (263)
145 PRK12428 3-alpha-hydroxysteroi 93.7 0.14 3.7E-06 31.8 5.0 38 158-195 2-39 (261)
146 PRK09186 flagellin modificatio 93.7 0.072 1.8E-06 33.9 3.4 36 58-95 50-87 (255)
147 PRK12939 short chain dehydroge 93.7 0.085 2.2E-06 33.4 3.7 160 37-224 34-195 (250)
148 PRK08703 short chain dehydroge 93.7 0.079 2E-06 33.6 3.5 69 145-223 128-199 (239)
149 cd01076 NAD_bind_1_Glu_DH NAD( 93.6 0.21 5.2E-06 30.7 5.6 84 138-224 5-125 (227)
150 PRK07035 short chain dehydroge 93.6 0.081 2.1E-06 33.5 3.5 31 192-223 166-196 (252)
151 PRK05786 fabG 3-ketoacyl-(acyl 93.6 0.086 2.2E-06 33.3 3.6 61 160-225 127-190 (238)
152 PRK07231 fabG 3-ketoacyl-(acyl 93.6 0.082 2.1E-06 33.4 3.5 31 193-224 163-193 (250)
153 PRK13814 pyrB aspartate carbam 93.6 0.75 1.9E-05 26.8 13.1 186 4-210 8-223 (310)
154 PRK09414 glutamate dehydrogena 93.5 0.56 1.4E-05 27.7 7.7 83 107-191 149-258 (446)
155 PRK08945 short chain dehydroge 93.5 0.079 2E-06 33.6 3.3 31 192-223 174-204 (245)
156 PRK05875 short chain dehydroge 93.5 0.087 2.2E-06 33.3 3.5 57 37-95 34-92 (277)
157 PRK06720 hypothetical protein; 93.5 0.091 2.3E-06 33.1 3.6 54 149-202 4-57 (169)
158 PRK12829 short chain dehydroge 93.5 0.092 2.3E-06 33.1 3.6 71 145-224 127-199 (264)
159 PRK12742 oxidoreductase; Provi 93.5 0.1 2.7E-06 32.7 3.9 60 161-225 124-186 (237)
160 PRK07097 gluconate 5-dehydroge 93.4 0.091 2.3E-06 33.1 3.5 160 37-224 37-198 (265)
161 PRK07776 consensus 93.4 0.098 2.5E-06 32.9 3.7 30 193-224 165-194 (252)
162 PRK07060 short chain dehydroge 93.4 0.097 2.5E-06 33.0 3.6 55 164-223 130-188 (245)
163 PRK08862 short chain dehydroge 93.4 0.095 2.4E-06 33.0 3.6 155 37-222 32-191 (227)
164 PRK12825 fabG 3-ketoacyl-(acyl 93.3 0.11 2.8E-06 32.6 3.8 57 163-224 138-196 (250)
165 PRK08818 prephenate dehydrogen 93.3 0.25 6.3E-06 30.1 5.6 20 165-184 8-27 (373)
166 PRK12936 3-ketoacyl-(acyl-carr 93.3 0.095 2.4E-06 33.0 3.5 48 171-223 142-190 (245)
167 PRK12367 short chain dehydroge 93.3 0.16 4.1E-06 31.4 4.6 59 157-215 13-93 (250)
168 PRK12490 6-phosphogluconate de 93.2 0.18 4.5E-06 31.2 4.7 14 92-105 61-74 (298)
169 PRK09564 coenzyme A disulfide 93.2 0.38 9.7E-06 28.8 6.4 73 158-231 146-266 (443)
170 PRK08416 7-alpha-hydroxysteroi 93.2 0.13 3.3E-06 32.1 4.0 49 172-225 156-205 (260)
171 PRK12744 short chain dehydroge 93.1 0.15 3.9E-06 31.6 4.3 40 179-223 158-197 (257)
172 PRK06114 short chain dehydroge 93.1 0.14 3.6E-06 31.9 4.1 41 178-223 166-206 (262)
173 PRK09242 tropinone reductase; 93.1 0.11 2.8E-06 32.6 3.5 30 194-224 171-200 (258)
174 PRK06172 short chain dehydroge 93.1 0.12 3.1E-06 32.3 3.7 150 37-224 34-196 (253)
175 PRK07523 gluconate 5-dehydroge 93.0 0.11 2.8E-06 32.6 3.5 156 37-224 36-194 (251)
176 PRK05565 fabG 3-ketoacyl-(acyl 93.0 0.13 3.4E-06 32.0 3.8 148 50-224 43-194 (247)
177 PRK05557 fabG 3-ketoacyl-(acyl 93.0 0.15 3.8E-06 31.7 4.1 31 193-224 164-194 (248)
178 PRK07890 short chain dehydroge 93.0 0.11 2.8E-06 32.5 3.4 68 145-223 123-192 (258)
179 PRK06113 7-alpha-hydroxysteroi 92.9 0.13 3.4E-06 32.0 3.7 42 178-224 157-198 (255)
180 pfam03949 Malic_M Malic enzyme 92.9 0.37 9.5E-06 28.9 6.0 79 145-225 10-127 (255)
181 PRK09072 short chain dehydroge 92.9 0.12 3.1E-06 32.3 3.4 33 191-224 158-190 (262)
182 PRK10754 quinone oxidoreductas 92.9 0.54 1.4E-05 27.8 6.8 96 139-235 120-241 (327)
183 cd05311 NAD_bind_2_malic_enz N 92.7 0.38 9.6E-06 28.8 5.8 83 145-230 10-125 (226)
184 PRK06200 2,3-dihydroxy-2,3-dih 92.7 0.13 3.3E-06 32.1 3.4 70 145-225 125-195 (263)
185 PRK06138 short chain dehydroge 92.6 0.15 3.8E-06 31.7 3.7 72 145-225 121-193 (252)
186 TIGR03366 HpnZ_proposed putati 92.6 0.57 1.4E-05 27.6 6.6 94 139-235 101-220 (280)
187 PRK08628 short chain dehydroge 92.6 0.16 4.2E-06 31.4 3.9 68 145-222 122-190 (258)
188 PRK08594 enoyl-(acyl carrier p 92.6 0.17 4.3E-06 31.3 3.9 39 55-95 50-91 (256)
189 COG0569 TrkA K+ transport syst 92.6 0.2 5.1E-06 30.7 4.3 54 162-234 151-209 (225)
190 PRK12828 short chain dehydroge 92.5 0.17 4.3E-06 31.3 3.8 73 145-226 122-195 (239)
191 PRK09496 trkA potassium transp 92.5 0.43 1.1E-05 28.4 5.9 82 139-222 210-317 (455)
192 PRK13394 3-hydroxybutyrate deh 92.5 0.15 3.9E-06 31.6 3.6 57 162-223 137-195 (262)
193 COG0334 GdhA Glutamate dehydro 92.5 0.27 6.8E-06 29.9 4.8 84 108-192 127-237 (411)
194 PRK07825 short chain dehydroge 92.5 0.14 3.7E-06 31.8 3.4 95 192-300 158-259 (273)
195 PRK08265 short chain dehydroge 92.4 0.16 4.1E-06 31.4 3.6 30 53-84 43-73 (261)
196 PRK07666 fabG 3-ketoacyl-(acyl 92.4 0.14 3.7E-06 31.8 3.4 160 37-225 33-195 (238)
197 PRK07889 enoyl-(acyl carrier p 92.4 0.17 4.3E-06 31.3 3.7 58 161-223 138-196 (256)
198 cd05312 NAD_bind_1_malic_enz N 92.4 0.47 1.2E-05 28.2 5.9 31 196-226 95-127 (279)
199 PRK12823 benD 1,6-dihydroxycyc 92.3 0.2 5.2E-06 30.7 4.0 26 193-219 164-189 (260)
200 PTZ00142 6-phosphogluconate de 92.3 0.14 3.5E-06 31.9 3.1 34 78-116 61-94 (474)
201 PRK00066 ldh L-lactate dehydro 92.3 0.27 6.9E-06 29.8 4.6 63 151-217 160-234 (315)
202 TIGR03385 CoA_CoA_reduc CoA-di 92.2 1.1 2.9E-05 25.5 9.1 72 159-231 135-254 (427)
203 PRK12439 NAD(P)H-dependent gly 92.2 0.34 8.7E-06 29.2 5.1 18 31-48 5-22 (340)
204 PRK06196 oxidoreductase; Provi 92.2 0.18 4.5E-06 31.2 3.6 53 36-95 52-104 (316)
205 PRK04663 murD UDP-N-acetylmura 92.1 0.47 1.2E-05 28.2 5.7 27 160-190 133-159 (438)
206 PRK07856 short chain dehydroge 92.1 0.14 3.6E-06 31.8 3.0 95 116-222 89-185 (254)
207 PRK12429 3-hydroxybutyrate deh 92.1 0.17 4.3E-06 31.3 3.4 70 145-224 121-192 (258)
208 PRK07478 short chain dehydroge 92.1 0.18 4.6E-06 31.1 3.5 42 178-224 155-196 (254)
209 TIGR01316 gltA glutamate synth 92.0 0.45 1.1E-05 28.3 5.5 150 50-231 195-421 (462)
210 PRK07201 short chain dehydroge 92.0 0.16 4.1E-06 31.4 3.2 45 158-202 373-417 (663)
211 COG3288 PntA NAD/NADP transhyd 92.0 0.11 2.9E-06 32.5 2.4 85 198-286 238-331 (356)
212 PRK05717 oxidoreductase; Valid 92.0 0.19 4.8E-06 30.9 3.5 51 37-95 37-89 (255)
213 PRK05872 short chain dehydroge 91.9 0.17 4.4E-06 31.2 3.3 35 191-226 161-195 (296)
214 cd05313 NAD_bind_2_Glu_DH NAD( 91.9 0.47 1.2E-05 28.2 5.5 53 136-189 10-65 (254)
215 PRK07063 short chain dehydroge 91.9 0.2 5.2E-06 30.7 3.6 31 193-224 166-196 (259)
216 PRK08220 2,3-dihydroxybenzoate 91.8 0.17 4.3E-06 31.3 3.1 32 192-224 157-188 (253)
217 PRK08085 gluconate 5-dehydroge 91.8 0.21 5.3E-06 30.6 3.5 49 172-225 149-198 (254)
218 PRK07479 consensus 91.7 0.21 5.3E-06 30.6 3.5 157 37-225 32-195 (252)
219 PRK06463 fabG 3-ketoacyl-(acyl 91.7 0.34 8.8E-06 29.1 4.6 41 178-223 149-189 (254)
220 PRK07806 short chain dehydroge 91.7 0.25 6.5E-06 30.0 3.9 32 53-85 47-78 (248)
221 PRK06841 short chain dehydroge 91.7 0.24 6.2E-06 30.2 3.8 72 145-225 129-201 (255)
222 PRK06346 consensus 91.6 0.22 5.7E-06 30.5 3.5 70 145-223 123-193 (251)
223 PRK08642 fabG 3-ketoacyl-(acyl 91.5 0.25 6.4E-06 30.1 3.8 68 145-223 128-198 (254)
224 PRK07326 short chain dehydroge 91.4 0.23 5.8E-06 30.4 3.4 32 192-224 160-191 (235)
225 PRK12827 short chain dehydroge 91.4 0.31 7.9E-06 29.4 4.1 49 171-224 150-199 (251)
226 KOG0725 consensus 91.3 0.29 7.4E-06 29.7 3.9 44 157-200 4-47 (270)
227 PRK06194 hypothetical protein; 91.3 0.24 6E-06 30.3 3.4 74 145-224 123-202 (301)
228 PTZ00082 L-lactate dehydrogena 91.3 0.34 8.6E-06 29.2 4.2 37 145-182 161-208 (322)
229 PRK13771 putative alcohol dehy 91.2 0.85 2.2E-05 26.4 6.2 94 139-234 143-256 (332)
230 TIGR01772 MDH_euk_gproteo mala 91.2 0.25 6.5E-06 30.1 3.5 65 163-227 1-114 (379)
231 PRK12935 acetoacetyl-CoA reduc 91.1 0.32 8.1E-06 29.4 4.0 42 179-225 155-196 (247)
232 PRK07677 short chain dehydroge 91.1 0.24 6.2E-06 30.2 3.3 55 37-95 30-85 (254)
233 PRK06057 short chain dehydroge 91.1 0.36 9.2E-06 29.0 4.2 40 180-224 154-193 (255)
234 KOG1504 consensus 91.0 0.79 2E-05 26.6 5.9 101 110-212 140-266 (346)
235 PRK06701 short chain dehydroge 91.0 0.32 8.1E-06 29.4 3.9 35 158-192 42-76 (289)
236 PRK05876 short chain dehydroge 91.0 0.26 6.6E-06 30.0 3.4 60 161-225 135-196 (275)
237 PRK07067 sorbitol dehydrogenas 91.0 0.27 6.9E-06 29.8 3.5 154 37-224 32-191 (256)
238 PRK07370 enoyl-(acyl carrier p 91.0 0.2 5.2E-06 30.7 2.8 28 194-222 172-199 (259)
239 PRK08264 short chain dehydroge 90.9 0.48 1.2E-05 28.1 4.7 33 191-224 150-182 (235)
240 PRK06550 fabG 3-ketoacyl-(acyl 90.9 0.48 1.2E-05 28.1 4.7 42 178-224 139-180 (237)
241 pfam00208 ELFV_dehydrog Glutam 90.8 0.76 1.9E-05 26.7 5.7 53 137-190 4-60 (237)
242 PRK10637 cysG siroheme synthas 90.8 0.64 1.6E-05 27.3 5.3 34 37-73 76-109 (457)
243 PRK06523 short chain dehydroge 90.8 0.3 7.6E-06 29.5 3.6 27 193-220 161-187 (260)
244 PRK06227 consensus 90.8 0.31 8E-06 29.4 3.7 159 37-224 32-193 (256)
245 COG0604 Qor NADPH:quinone redu 90.8 1.1 2.7E-05 25.8 6.3 96 139-235 122-243 (326)
246 PRK07792 fabG 3-ketoacyl-(acyl 90.7 0.4 1E-05 28.7 4.1 17 221-237 238-254 (303)
247 cd00762 NAD_bind_malic_enz NAD 90.7 0.97 2.5E-05 26.0 6.1 32 196-227 96-129 (254)
248 TIGR03325 BphB_TodD cis-2,3-di 90.6 0.4 1E-05 28.7 4.1 28 193-222 164-191 (262)
249 PRK09526 lacI lac repressor; R 90.5 1.7 4.2E-05 24.4 8.2 96 3-104 24-134 (342)
250 PRK08936 glucose-1-dehydrogena 90.5 0.39 9.9E-06 28.8 3.9 33 52-85 47-79 (261)
251 COG1004 Ugd Predicted UDP-gluc 90.5 1.7 4.3E-05 24.4 7.2 85 145-231 296-406 (414)
252 PRK06171 sorbitol-6-phosphate 90.5 0.26 6.6E-06 30.0 3.0 71 145-224 126-197 (266)
253 PRK08063 enoyl-(acyl carrier p 90.4 0.37 9.5E-06 28.9 3.8 158 38-224 32-193 (250)
254 pfam03435 Saccharop_dh Sacchar 90.3 0.33 8.5E-06 29.2 3.5 75 49-130 79-157 (384)
255 PRK06935 2-deoxy-D-gluconate 3 90.3 0.38 9.6E-06 28.9 3.7 41 179-224 162-202 (258)
256 cd05291 HicDH_like L-2-hydroxy 90.2 0.62 1.6E-05 27.4 4.8 86 145-235 149-254 (306)
257 PRK12746 short chain dehydroge 90.2 0.37 9.4E-06 28.9 3.6 40 40-84 37-77 (254)
258 PRK02705 murD UDP-N-acetylmura 90.1 1.3 3.3E-05 25.2 6.3 21 160-183 134-154 (459)
259 PRK08278 short chain dehydroge 90.1 0.36 9.2E-06 29.0 3.5 34 50-85 50-84 (273)
260 PRK06139 short chain dehydroge 90.1 0.29 7.5E-06 29.6 3.0 156 37-227 33-198 (324)
261 TIGR01692 HIBADH 3-hydroxyisob 90.1 0.32 8.2E-06 29.3 3.2 90 167-271 2-122 (290)
262 PRK12937 short chain dehydroge 90.1 0.46 1.2E-05 28.3 4.0 32 192-224 161-192 (245)
263 PRK06198 short chain dehydroge 90.0 0.42 1.1E-05 28.5 3.7 69 145-221 124-193 (268)
264 pfam00185 OTCace Aspartate/orn 90.0 0.63 1.6E-05 27.3 4.6 53 160-212 1-81 (155)
265 TIGR00518 alaDH alanine dehydr 89.9 1.3 3.4E-05 25.0 6.3 124 159-286 166-322 (372)
266 PRK07831 short chain dehydroge 89.9 0.41 1.1E-05 28.6 3.7 71 145-224 136-208 (261)
267 PRK05562 precorrin-2 dehydroge 89.9 0.9 2.3E-05 26.2 5.4 119 147-280 9-154 (222)
268 PRK12748 3-ketoacyl-(acyl-carr 89.9 0.47 1.2E-05 28.2 3.9 33 192-225 175-207 (257)
269 PRK05479 ketol-acid reductoiso 89.8 0.73 1.9E-05 26.9 4.8 22 38-64 43-64 (336)
270 PRK13512 coenzyme A disulfide 89.7 0.46 1.2E-05 28.3 3.8 72 159-231 146-262 (438)
271 pfam07991 IlvN Acetohydroxy ac 89.7 0.74 1.9E-05 26.8 4.8 77 159-236 2-99 (165)
272 KOG0068 consensus 89.7 1.3 3.2E-05 25.2 6.0 177 37-233 8-236 (406)
273 PRK07109 short chain dehydroge 89.6 0.37 9.5E-06 28.9 3.2 152 37-223 35-197 (338)
274 pfam00056 Ldh_1_N lactate/mala 89.6 0.55 1.4E-05 27.7 4.1 54 163-216 2-81 (142)
275 PRK00683 murD UDP-N-acetylmura 89.6 0.79 2E-05 26.6 4.9 23 160-185 127-149 (418)
276 smart00829 PKS_ER Enoylreducta 89.5 1.8 4.6E-05 24.1 6.7 95 140-235 85-207 (288)
277 TIGR01850 argC N-acetyl-gamma- 89.5 0.76 2E-05 26.7 4.7 84 145-233 14-105 (361)
278 PRK06398 aldose dehydrogenase; 89.4 0.41 1E-05 28.6 3.3 71 145-225 113-184 (256)
279 PRK08226 short chain dehydroge 89.3 0.5 1.3E-05 28.0 3.7 69 145-223 122-193 (263)
280 PRK03803 murD UDP-N-acetylmura 89.2 1.1 2.9E-05 25.5 5.5 22 160-184 134-155 (448)
281 PRK09496 trkA potassium transp 89.2 0.57 1.4E-05 27.6 3.9 84 143-226 129-254 (455)
282 PRK06598 aspartate-semialdehyd 89.2 0.82 2.1E-05 26.5 4.7 30 142-176 130-163 (348)
283 PRK09880 L-idonate 5-dehydroge 89.2 1.7 4.4E-05 24.3 6.4 77 158-235 167-268 (343)
284 PRK08993 2-deoxy-D-gluconate 3 89.2 0.45 1.1E-05 28.4 3.4 40 180-224 158-197 (253)
285 PRK00436 argC N-acetyl-gamma-g 89.0 0.77 2E-05 26.7 4.5 13 191-203 208-220 (345)
286 PRK07533 enoyl-(acyl carrier p 89.0 0.5 1.3E-05 28.0 3.5 52 37-94 35-88 (254)
287 PRK07102 short chain dehydroge 88.9 0.42 1.1E-05 28.5 3.1 57 163-224 129-187 (243)
288 PRK07775 short chain dehydroge 88.9 0.44 1.1E-05 28.4 3.2 30 193-223 168-197 (275)
289 cd06325 PBP1_ABC_uncharacteriz 88.9 2.2 5.6E-05 23.5 9.1 26 36-61 3-28 (281)
290 PRK07577 short chain dehydroge 88.9 0.49 1.2E-05 28.1 3.4 33 192-225 147-179 (234)
291 cd05293 LDH_1 A subgroup of L- 88.9 0.8 2E-05 26.6 4.5 26 32-57 3-28 (312)
292 PRK05855 short chain dehydroge 88.6 0.52 1.3E-05 27.9 3.4 44 158-201 312-355 (582)
293 pfam00389 2-Hacid_dh D-isomer 88.6 2.3 5.9E-05 23.4 11.3 163 54-234 12-232 (313)
294 PRK08507 prephenate dehydrogen 88.6 0.8 2E-05 26.6 4.3 53 136-192 106-167 (275)
295 PRK08589 short chain dehydroge 88.3 0.59 1.5E-05 27.5 3.5 69 145-223 123-192 (272)
296 PRK08251 short chain dehydroge 88.3 0.54 1.4E-05 27.8 3.3 57 163-224 134-193 (248)
297 PRK06079 enoyl-(acyl carrier p 88.2 0.63 1.6E-05 27.3 3.6 30 193-223 166-195 (252)
298 cd05292 LDH_2 A subgroup of L- 88.2 0.88 2.2E-05 26.3 4.4 33 150-183 153-196 (308)
299 pfam10727 Rossmann-like Rossma 88.2 0.65 1.7E-05 27.2 3.7 66 166-233 2-88 (111)
300 PRK11303 DNA-binding transcrip 88.1 2.5 6.3E-05 23.2 10.3 155 3-170 19-188 (330)
301 PRK05396 tdh L-threonine 3-deh 88.1 1.6 4E-05 24.6 5.6 78 157-235 160-265 (341)
302 PRK07985 oxidoreductase; Provi 88.0 0.73 1.9E-05 26.9 3.9 32 159-190 47-78 (294)
303 TIGR03206 benzo_BadH 2-hydroxy 88.0 0.6 1.5E-05 27.4 3.4 41 179-224 151-191 (250)
304 PRK08303 short chain dehydroge 87.9 0.29 7.3E-06 29.7 1.7 45 51-97 56-101 (305)
305 PRK06997 enoyl-(acyl carrier p 87.9 0.65 1.6E-05 27.2 3.5 41 52-95 47-89 (260)
306 PRK06484 short chain dehydroge 87.8 0.61 1.5E-05 27.4 3.3 40 157-196 270-309 (530)
307 PRK06077 fabG 3-ketoacyl-(acyl 87.8 0.75 1.9E-05 26.8 3.8 34 51-85 42-75 (249)
308 PRK12481 2-deoxy-D-gluconate 3 87.7 0.85 2.2E-05 26.4 4.0 42 179-225 155-196 (251)
309 PRK08415 enoyl-(acyl carrier p 87.6 0.4 1E-05 28.7 2.3 18 220-237 235-252 (274)
310 PRK06181 short chain dehydroge 87.6 0.57 1.5E-05 27.6 3.1 154 37-225 28-190 (263)
311 PRK08324 short chain dehydroge 87.6 0.74 1.9E-05 26.8 3.7 39 157-195 417-455 (676)
312 PRK09134 short chain dehydroge 87.5 0.84 2.2E-05 26.4 3.9 22 261-282 207-228 (256)
313 PRK09260 3-hydroxybutyryl-CoA 87.3 1.4 3.5E-05 25.0 4.9 86 76-170 98-184 (289)
314 pfam03807 F420_oxidored NADP o 87.2 1.2 3E-05 25.4 4.5 66 164-232 2-90 (93)
315 PRK08293 3-hydroxybutyryl-CoA 87.2 1.4 3.5E-05 25.0 4.8 104 69-181 92-200 (288)
316 PRK11863 N-acetyl-gamma-glutam 87.2 1.1 2.7E-05 25.7 4.3 13 190-202 178-190 (314)
317 cd01337 MDH_glyoxysomal_mitoch 87.2 1.4 3.5E-05 25.0 4.8 11 157-167 163-173 (310)
318 PRK05249 soluble pyridine nucl 87.2 2.4 6.2E-05 23.2 6.1 36 159-195 174-209 (465)
319 PRK13529 malate dehydrogenase; 87.1 2.4 6.2E-05 23.2 6.1 89 137-227 272-405 (563)
320 PRK09291 short chain dehydroge 87.0 0.69 1.7E-05 27.0 3.2 152 37-225 29-185 (257)
321 PRK06912 acoL dihydrolipoamide 86.8 2.7 7E-05 22.9 6.2 36 158-194 167-202 (458)
322 PRK12747 short chain dehydroge 86.8 0.96 2.5E-05 26.0 3.9 41 179-224 157-197 (252)
323 PRK06197 short chain dehydroge 86.6 0.76 1.9E-05 26.7 3.3 58 37-96 43-101 (306)
324 PRK07251 pyridine nucleotide-d 86.6 1.2 3.1E-05 25.3 4.3 34 160-194 156-189 (438)
325 PTZ00117 malate dehydrogenase; 86.5 1.2 3E-05 25.4 4.2 38 145-183 150-198 (313)
326 PRK11181 23S rRNA (guanosine-2 86.5 3 7.7E-05 22.6 10.3 214 1-277 1-230 (244)
327 PRK06300 enoyl-(acyl carrier p 86.4 0.86 2.2E-05 26.4 3.5 32 193-225 201-233 (298)
328 PRK07024 short chain dehydroge 86.3 0.77 2E-05 26.7 3.2 57 163-224 131-189 (256)
329 PRK08263 short chain dehydroge 86.2 0.79 2E-05 26.6 3.2 53 170-227 138-191 (275)
330 TIGR01763 MalateDH_bact malate 86.2 1.3 3.3E-05 25.1 4.3 64 162-227 2-98 (308)
331 TIGR01505 tartro_sem_red 2-hyd 86.0 1.8 4.5E-05 24.2 4.9 74 164-238 2-99 (291)
332 PRK01368 murD UDP-N-acetylmura 85.8 2.4 6E-05 23.3 5.5 23 160-185 129-151 (450)
333 KOG4169 consensus 85.8 0.99 2.5E-05 25.9 3.5 177 77-298 43-240 (261)
334 COG0240 GpsA Glycerol-3-phosph 85.7 3 7.6E-05 22.6 5.9 17 37-53 27-43 (329)
335 PRK06128 oxidoreductase; Provi 85.7 0.93 2.4E-05 26.1 3.4 35 158-192 52-86 (300)
336 cd00578 L-fuc_L-ara-isomerases 85.4 3.4 8.7E-05 22.2 6.6 109 34-147 160-279 (452)
337 PRK06505 enoyl-(acyl carrier p 85.4 1.2 3.1E-05 25.3 3.8 81 1-95 1-90 (271)
338 PRK12384 sorbitol-6-phosphate 85.3 0.98 2.5E-05 26.0 3.3 30 193-223 163-193 (259)
339 PRK07791 short chain dehydroge 85.1 0.53 1.3E-05 27.8 1.9 34 50-85 52-86 (285)
340 PRK12859 3-ketoacyl-(acyl-carr 85.1 1.2 3E-05 25.4 3.7 42 179-225 167-208 (257)
341 PRK06947 glucose-1-dehydrogena 85.1 1.3 3.4E-05 25.0 3.9 53 38-95 35-89 (252)
342 PRK07074 short chain dehydroge 85.0 1 2.6E-05 25.8 3.3 17 253-269 220-240 (256)
343 KOG1201 consensus 84.9 1.8 4.6E-05 24.1 4.5 37 76-113 102-142 (300)
344 PRK06182 short chain dehydroge 84.8 1.5 3.9E-05 24.6 4.1 55 165-224 127-185 (273)
345 PRK13982 bifunctional SbtC-lik 84.7 3.1 7.8E-05 22.5 5.6 108 110-219 201-350 (476)
346 PRK06123 short chain dehydroge 84.6 1.4 3.6E-05 24.9 3.8 72 145-225 122-198 (249)
347 cd05294 LDH-like_MDH_nadp A la 84.4 1.8 4.6E-05 24.1 4.3 15 90-104 168-188 (309)
348 PRK06483 short chain dehydroge 84.4 1.9 4.8E-05 24.0 4.4 40 54-95 40-79 (236)
349 pfam01118 Semialdhyde_dh Semia 84.2 1.1 2.9E-05 25.6 3.2 34 200-233 62-97 (121)
350 PRK06223 malate dehydrogenase; 84.1 1.8 4.6E-05 24.1 4.2 26 156-181 160-196 (312)
351 PRK05854 short chain dehydroge 84.1 1.2 3E-05 25.5 3.2 21 275-295 292-312 (314)
352 CHL00194 ycf39 Ycf39; Provisio 84.0 2.7 6.8E-05 22.9 5.1 28 255-287 220-247 (319)
353 PRK06914 short chain dehydroge 84.0 1.1 2.8E-05 25.6 3.1 72 145-226 121-194 (280)
354 PRK10262 thioredoxin reductase 83.9 2 5.1E-05 23.8 4.4 39 156-195 141-179 (321)
355 PRK08690 enoyl-(acyl carrier p 83.7 1.5 3.9E-05 24.6 3.7 40 53-95 48-89 (261)
356 cd01492 Aos1_SUMO Ubiquitin ac 83.6 3.2 8E-05 22.4 5.3 34 158-192 18-52 (197)
357 TIGR01525 ATPase-IB_hvy heavy 83.5 3.1 8E-05 22.5 5.3 87 10-109 447-537 (639)
358 PRK00421 murC UDP-N-acetylmura 83.4 4.1 0.0001 21.6 5.9 20 96-115 272-291 (459)
359 PRK12938 acetyacetyl-CoA reduc 83.2 1.7 4.4E-05 24.3 3.8 34 191-225 160-193 (246)
360 pfam02254 TrkA_N TrkA-N domain 83.2 1.5 3.8E-05 24.7 3.5 30 164-195 1-30 (115)
361 PRK08261 fabG 3-ketoacyl-(acyl 83.1 1.3 3.2E-05 25.2 3.1 37 157-193 203-239 (447)
362 PRK06101 short chain dehydroge 83.1 1.3 3.3E-05 25.2 3.1 62 160-226 119-182 (241)
363 TIGR02371 ala_DH_arch alanine 83.0 1.1 2.9E-05 25.5 2.8 57 195-260 185-242 (327)
364 PRK05671 aspartate-semialdehyd 82.9 1.5 3.8E-05 24.7 3.4 11 201-211 223-233 (336)
365 PRK05884 short chain dehydroge 82.8 1.5 3.8E-05 24.7 3.4 40 37-82 27-66 (223)
366 KOG3349 consensus 82.8 1.6 4.1E-05 24.5 3.5 80 147-231 27-108 (170)
367 PRK08159 enoyl-(acyl carrier p 82.8 0.65 1.7E-05 27.2 1.5 53 37-96 39-93 (272)
368 PRK06129 3-hydroxyacyl-CoA deh 82.7 2.8 7.1E-05 22.8 4.7 106 68-182 89-199 (308)
369 COG1028 FabG Dehydrogenases wi 82.5 2.5 6.3E-05 23.2 4.4 55 165-224 137-195 (251)
370 PRK08643 acetoin reductase; Va 82.4 1.6 4E-05 24.6 3.3 158 37-223 29-190 (256)
371 PRK07984 enoyl-(acyl carrier p 82.4 0.72 1.8E-05 26.9 1.6 27 193-220 168-194 (262)
372 PRK13608 diacylglycerol glucos 82.1 4.6 0.00012 21.3 7.2 56 157-212 198-281 (391)
373 PRK12831 putative oxidoreducta 81.8 2.7 7E-05 22.9 4.4 37 159-196 279-315 (464)
374 PRK06416 dihydrolipoamide dehy 81.7 4.2 0.00011 21.6 5.3 36 158-194 169-204 (462)
375 PRK08017 short chain dehydroge 81.6 1.6 4E-05 24.5 3.1 33 191-224 153-185 (256)
376 KOG3007 consensus 81.6 3.2 8.1E-05 22.4 4.7 76 161-236 164-240 (333)
377 PRK09287 6-phosphogluconate de 81.6 2.5 6.3E-05 23.2 4.1 31 78-113 45-75 (459)
378 COG0039 Mdh Malate/lactate deh 81.4 2.1 5.3E-05 23.7 3.7 34 149-183 154-198 (313)
379 PRK08664 aspartate-semialdehyd 81.1 2.4 6E-05 23.3 3.9 14 276-289 323-336 (350)
380 cd00704 MDH Malate dehydrogena 80.9 4 0.0001 21.7 5.0 68 32-104 117-194 (323)
381 PRK07832 short chain dehydroge 80.9 1.7 4.4E-05 24.3 3.1 58 163-225 132-191 (272)
382 TIGR01511 ATPase-IB1_Cu copper 80.8 2.4 6.2E-05 23.2 3.9 65 9-88 367-431 (545)
383 PRK06728 aspartate-semialdehyd 80.7 5.1 0.00013 21.0 7.6 11 142-152 132-142 (347)
384 PRK08340 glucose-1-dehydrogena 80.7 1.9 4.9E-05 23.9 3.3 53 37-95 27-81 (259)
385 TIGR01317 GOGAT_sm_gam glutama 80.7 1.7 4.3E-05 24.3 3.0 33 159-192 149-181 (517)
386 PRK07819 3-hydroxybutyryl-CoA 80.6 3.7 9.5E-05 21.9 4.8 29 141-170 157-185 (284)
387 PRK05976 dihydrolipoamide dehy 80.6 5.2 0.00013 20.9 5.5 36 158-194 172-207 (464)
388 PRK10309 galactitol-1-phosphat 80.6 4.8 0.00012 21.1 5.3 77 158-235 158-262 (347)
389 PRK13403 ketol-acid reductoiso 80.3 3.9 9.9E-05 21.8 4.8 22 38-65 42-63 (335)
390 PRK12814 putative NADPH-depend 80.1 5.1 0.00013 21.0 5.3 48 147-195 307-357 (652)
391 TIGR01292 TRX_reduct thioredox 80.1 2.1 5.3E-05 23.7 3.3 64 158-222 148-219 (321)
392 smart00859 Semialdhyde_dh Semi 80.0 2.2 5.7E-05 23.5 3.4 31 203-233 64-99 (122)
393 PRK12743 acetoin dehydrogenase 79.9 2.5 6.4E-05 23.1 3.7 57 161-222 133-190 (253)
394 pfam04392 ABC_sub_bind ABC tra 79.7 5.5 0.00014 20.8 9.2 59 35-94 2-63 (292)
395 COG0059 IlvC Ketol-acid reduct 79.6 3.9 0.0001 21.8 4.6 85 38-136 44-143 (338)
396 PRK13984 putative oxidoreducta 79.6 5.1 0.00013 21.0 5.2 24 159-183 416-439 (604)
397 PRK11749 putative oxidoreducta 79.4 4.7 0.00012 21.3 4.9 49 147-196 254-311 (460)
398 PRK07454 short chain dehydroge 79.3 2.1 5.2E-05 23.7 3.1 154 36-225 32-195 (241)
399 PRK05993 short chain dehydroge 79.3 2 5.2E-05 23.7 3.1 59 160-223 127-186 (277)
400 PRK07530 3-hydroxybutyryl-CoA 79.2 4.3 0.00011 21.5 4.7 25 103-127 121-145 (292)
401 PRK12745 3-ketoacyl-(acyl-carr 79.1 3.1 7.8E-05 22.5 3.9 29 194-223 173-201 (259)
402 PRK08267 short chain dehydroge 79.1 2.1 5.4E-05 23.7 3.1 72 145-226 117-190 (258)
403 PRK12810 gltD glutamate syntha 78.9 5 0.00013 21.0 5.0 32 157-189 277-309 (472)
404 PRK12809 putative oxidoreducta 78.7 5.7 0.00015 20.7 5.2 37 158-195 448-485 (639)
405 cd01338 MDH_choloroplast_like 78.5 4.6 0.00012 21.3 4.7 13 171-183 197-209 (322)
406 COG0136 Asd Aspartate-semialde 78.5 3.2 8.1E-05 22.4 3.9 27 30-56 25-51 (334)
407 PRK12770 putative glutamate sy 78.2 2.7 6.9E-05 22.9 3.4 37 158-195 168-205 (350)
408 PRK11033 zntA zinc/cadmium/mer 78.2 5.7 0.00014 20.7 5.1 17 52-68 100-116 (739)
409 TIGR02823 oxido_YhdH putative 78.0 6.1 0.00016 20.4 5.2 81 130-224 123-205 (330)
410 COG2072 TrkA Predicted flavopr 77.8 2.5 6.5E-05 23.1 3.2 36 156-192 170-205 (443)
411 COG0272 Lig NAD-dependent DNA 77.7 4 0.0001 21.7 4.2 16 265-280 449-464 (667)
412 PRK06130 3-hydroxybutyryl-CoA 77.5 5 0.00013 21.0 4.6 105 69-182 86-195 (310)
413 KOG0023 consensus 77.2 6.2 0.00016 20.4 5.0 175 36-236 76-282 (360)
414 PRK05693 short chain dehydroge 76.9 3.8 9.6E-05 21.9 3.8 70 145-224 112-182 (274)
415 PRK08177 short chain dehydroge 76.7 2.6 6.5E-05 23.1 3.0 43 179-226 146-188 (225)
416 pfam04321 RmlD_sub_bind RmlD s 76.5 6.1 0.00016 20.4 4.8 12 285-296 261-272 (284)
417 pfam00743 FMO-like Flavin-bind 76.4 2.5 6.4E-05 23.1 2.8 36 158-194 180-215 (532)
418 PRK07066 3-hydroxybutyryl-CoA 76.1 6.3 0.00016 20.4 4.8 152 11-181 43-199 (321)
419 PRK07531 bifunctional 3-hydrox 75.8 6.4 0.00016 20.3 4.8 10 113-122 175-184 (489)
420 KOG1208 consensus 75.6 4.7 0.00012 21.3 4.1 68 35-108 36-103 (314)
421 PRK12771 putative glutamate sy 75.6 7 0.00018 20.0 4.9 49 147-196 251-302 (560)
422 PRK12769 putative oxidoreducta 75.5 7.2 0.00018 20.0 5.1 39 157-196 464-503 (654)
423 COG1064 AdhP Zn-dependent alco 75.5 7.2 0.00018 19.9 5.3 76 159-236 165-262 (339)
424 TIGR02733 desat_CrtD C-3',4' d 75.3 5.7 0.00015 20.6 4.4 79 32-121 84-165 (499)
425 PRK10693 response regulator of 75.3 5.1 0.00013 21.0 4.2 64 36-111 9-74 (337)
426 pfam05368 NmrA NmrA-like famil 75.0 5.5 0.00014 20.8 4.3 39 55-102 38-76 (232)
427 cd06303 PBP1_LuxPQ_Quorum_Sens 74.8 7.5 0.00019 19.8 5.6 66 34-102 1-71 (280)
428 PRK07634 pyrroline-5-carboxyla 74.8 6.9 0.00018 20.1 4.7 46 175-222 121-166 (245)
429 PRK07707 consensus 74.8 4 0.0001 21.7 3.5 31 193-224 156-186 (239)
430 PRK08223 hypothetical protein; 74.6 2.9 7.4E-05 22.7 2.8 22 162-184 28-49 (287)
431 KOG1210 consensus 74.5 6.3 0.00016 20.4 4.5 33 204-236 205-243 (331)
432 PRK06847 hypothetical protein; 74.3 4.1 0.0001 21.7 3.5 21 202-222 149-169 (375)
433 PRK06603 enoyl-(acyl carrier p 74.2 4.5 0.00011 21.4 3.7 43 37-85 37-80 (260)
434 PRK05225 ketol-acid reductoiso 74.0 3.4 8.7E-05 22.2 3.0 91 40-138 65-168 (489)
435 PRK06924 short chain dehydroge 73.7 4.8 0.00012 21.2 3.7 41 179-223 153-194 (251)
436 KOG1200 consensus 73.1 4.6 0.00012 21.3 3.5 144 53-224 51-203 (256)
437 PRK08219 short chain dehydroge 73.0 4.4 0.00011 21.5 3.4 57 163-225 122-180 (226)
438 TIGR01088 aroQ 3-dehydroquinat 72.9 8.1 0.00021 19.6 4.7 46 50-97 30-75 (144)
439 PRK08268 3-hydroxybutyryl-CoA 72.8 7.8 0.0002 19.7 4.6 117 63-188 84-211 (503)
440 PRK07956 ligA NAD-dependent DN 72.8 6.3 0.00016 20.4 4.1 15 266-280 450-464 (668)
441 COG0002 ArgC Acetylglutamate s 72.8 4.8 0.00012 21.2 3.5 18 186-204 207-224 (349)
442 TIGR03466 HpnA hopanoid-associ 72.7 8.4 0.00021 19.5 5.2 15 160-174 159-173 (328)
443 KOG0025 consensus 72.6 8.4 0.00021 19.5 5.2 67 139-211 143-216 (354)
444 PRK12824 acetoacetyl-CoA reduc 72.0 5.5 0.00014 20.8 3.7 41 180-225 152-192 (245)
445 PRK06953 short chain dehydroge 71.6 4 0.0001 21.7 2.9 20 206-226 166-185 (222)
446 PRK06180 short chain dehydroge 71.6 4.3 0.00011 21.5 3.1 34 192-226 158-191 (277)
447 TIGR02356 adenyl_thiF thiazole 71.3 3.8 9.8E-05 21.9 2.7 34 158-192 18-52 (210)
448 pfam00106 adh_short short chai 70.8 4 0.0001 21.8 2.7 23 164-186 3-25 (167)
449 PRK08644 thiamine biosynthesis 70.7 2.9 7.4E-05 22.7 2.0 31 246-276 170-200 (209)
450 KOG1205 consensus 70.6 3.3 8.4E-05 22.3 2.3 84 138-230 125-209 (282)
451 COG2910 Putative NADH-flavin r 70.4 8.1 0.00021 19.6 4.3 54 162-215 1-73 (211)
452 cd06312 PBP1_ABC_sugar_binding 69.8 9.6 0.00025 19.1 7.6 69 34-104 1-71 (271)
453 PRK08020 ubiF 2-octaprenyl-3-m 69.7 6.4 0.00016 20.3 3.6 19 202-220 155-173 (391)
454 PRK12409 D-amino acid dehydrog 69.2 4.6 0.00012 21.3 2.8 13 202-214 244-256 (410)
455 PRK07846 mycothione/glutathion 69.1 9.9 0.00025 19.0 4.5 32 162-194 169-200 (453)
456 PRK06444 prephenate dehydrogen 69.0 9.2 0.00024 19.2 4.3 55 163-233 2-59 (197)
457 COG0492 TrxB Thioredoxin reduc 69.0 6.9 0.00018 20.1 3.7 38 158-196 140-177 (305)
458 PRK09492 treR trehalose repres 69.0 10 0.00026 19.0 7.8 92 3-97 23-125 (315)
459 COG1063 Tdh Threonine dehydrog 68.9 10 0.00026 18.9 7.2 79 159-238 167-274 (350)
460 COG0300 DltE Short-chain dehyd 68.9 6.6 0.00017 20.2 3.5 156 36-224 32-195 (265)
461 PRK08849 2-octaprenyl-3-methyl 68.8 6.8 0.00017 20.1 3.6 32 203-234 154-193 (384)
462 PRK05868 hypothetical protein; 68.6 6.4 0.00016 20.3 3.4 17 204-220 148-164 (372)
463 COG0677 WecC UDP-N-acetyl-D-ma 68.4 10 0.00026 18.9 7.8 144 78-232 243-419 (436)
464 PRK10538 3-hydroxy acid dehydr 68.4 5.5 0.00014 20.8 3.0 31 192-223 155-185 (248)
465 PRK06732 phosphopantothenate-- 68.4 5.2 0.00013 20.9 2.9 139 42-193 21-188 (228)
466 cd00755 YgdL_like Family of ac 68.0 5.1 0.00013 21.0 2.8 41 76-122 68-110 (231)
467 TIGR01702 CO_DH_cata carbon-mo 68.0 3.1 7.9E-05 22.5 1.7 137 116-296 413-563 (647)
468 PRK10083 putative dehydrogenas 67.5 11 0.00027 18.7 7.4 78 158-236 158-262 (339)
469 pfam03720 UDPG_MGDP_dh_C UDP-g 67.4 11 0.00027 18.7 4.4 36 196-232 52-93 (99)
470 PRK09853 putative selenate red 67.3 11 0.00027 18.7 5.2 141 34-196 552-715 (1032)
471 PRK03562 glutathione-regulated 67.1 11 0.00027 18.8 4.3 56 160-216 398-475 (615)
472 PRK08243 4-hydroxybenzoate 3-m 66.8 5.8 0.00015 20.6 2.9 22 199-220 146-167 (392)
473 pfam00070 Pyr_redox Pyridine n 66.5 6.1 0.00015 20.5 2.9 35 163-198 1-35 (82)
474 PRK07411 hypothetical protein; 66.3 5.7 0.00015 20.7 2.8 48 76-130 95-144 (390)
475 PRK05808 3-hydroxybutyryl-CoA 66.2 7.4 0.00019 19.9 3.3 108 64-180 85-196 (282)
476 cd01336 MDH_cytoplasmic_cytoso 66.1 11 0.00029 18.6 4.9 21 33-53 120-140 (325)
477 TIGR03590 PseG pseudaminic aci 66.0 11 0.00029 18.6 5.6 67 162-231 202-268 (280)
478 PRK10727 DNA-binding transcrip 66.0 11 0.00029 18.6 8.1 106 3-115 20-140 (342)
479 TIGR03140 AhpF alkyl hydropero 65.9 7 0.00018 20.0 3.2 39 156-195 347-385 (515)
480 COG1090 Predicted nucleoside-d 65.9 10 0.00026 19.0 4.0 18 157-174 148-165 (297)
481 COG4221 Short-chain alcohol de 65.8 8.1 0.00021 19.6 3.5 20 191-210 160-179 (246)
482 PRK05650 short chain dehydroge 65.4 7.5 0.00019 19.8 3.2 60 160-224 128-188 (270)
483 PRK07023 short chain dehydroge 65.3 12 0.0003 18.5 4.7 32 191-224 157-188 (243)
484 PRK05690 molybdopterin biosynt 65.0 5.3 0.00013 20.9 2.4 74 159-235 30-156 (245)
485 TIGR01524 ATPase-IIIB_Mg magne 64.6 12 0.00031 18.4 5.0 48 15-72 542-589 (892)
486 COG3967 DltE Short-chain dehyd 64.5 9.6 0.00024 19.1 3.6 158 12-212 15-180 (245)
487 PRK06179 short chain dehydroge 64.2 6.2 0.00016 20.4 2.6 42 160-201 3-44 (270)
488 PRK01906 tetraacyldisaccharide 64.2 12 0.00031 18.3 4.2 64 143-210 72-155 (339)
489 PRK05597 molybdopterin biosynt 64.0 9.4 0.00024 19.1 3.5 57 159-216 26-83 (355)
490 TIGR03143 AhpF_homolog putativ 64.0 7.8 0.0002 19.7 3.1 35 159-194 141-175 (555)
491 PRK06567 putative bifunctional 63.7 6 0.00015 20.5 2.5 38 151-189 391-428 (1048)
492 TIGR02694 arsenite_ox_S arseni 63.7 2.5 6.4E-05 23.1 0.6 9 263-271 39-47 (130)
493 PRK05599 hypothetical protein; 63.6 7.6 0.00019 19.8 3.0 41 163-204 2-42 (246)
494 KOG1198 consensus 63.0 13 0.00033 18.2 7.6 94 140-234 132-256 (347)
495 PRK01122 potassium-transportin 62.9 13 0.00033 18.2 5.1 72 10-95 447-518 (684)
496 PRK03659 glutathione-regulated 62.6 13 0.00033 18.2 4.0 53 163-216 402-476 (602)
497 PRK06617 2-octaprenyl-6-methox 62.6 9 0.00023 19.3 3.2 47 163-212 3-49 (374)
498 cd06314 PBP1_tmGBP Periplasmic 62.5 13 0.00034 18.1 6.2 61 34-96 1-61 (271)
499 KOG1502 consensus 62.5 13 0.00034 18.1 4.2 65 160-227 5-71 (327)
500 TIGR00182 plsX fatty acid/phos 62.5 5.8 0.00015 20.6 2.3 57 204-260 94-174 (344)
No 1
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=0 Score=727.65 Aligned_cols=281 Identities=43% Similarity=0.701 Sum_probs=272.4
Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH
Q ss_conf 65005389999999999999999998369997599999679867899999999999983970000247411122669999
Q gi|254780506|r 2 GSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENA 81 (306)
Q Consensus 2 a~iLdGk~iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~ 81 (306)
|+|||||++|++++++++++++.++++.+++|+|++|+|||||+|.+|+++|+|+|+++||.++.++||++++|+|+++.
T Consensus 3 A~ildGk~iA~~i~~~l~~~v~~~~~~~~~~P~Lavilvg~d~aS~~Yv~~K~k~a~~~Gi~~~~~~l~~~~s~~el~~~ 82 (288)
T PRK10792 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLAL 82 (288)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf 77725699999999999999999997389998579999589844799999999999975997999866889999999999
Q ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99852312212588834688711378898606874351321553388873047788756766799999999867877200
Q gi|254780506|r 82 VLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSG 161 (306)
Q Consensus 82 I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~G 161 (306)
|++||+|++|||||||+|||+|+|+++++++|+|+||||||||+|+|+|+.+. +.|+||||+||++||++| +++++|
T Consensus 83 I~~LN~d~~V~GIiVQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~G~L~~~~--~~~~PcTp~av~~lL~~y-~i~~~G 159 (288)
T PRK10792 83 IDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRA--PRLRPCTPRGIVTLLERY-NIDTFG 159 (288)
T ss_pred HHHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCC--CCCCCCCHHHHHHHHHHC-CCCCCC
T ss_conf 99996799878637836899885779998514988898879988998770699--866787199999999974-756378
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 12899616442034689999862045331246765347764223573652244321220104766269983111112676
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQ 241 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~~~~~ 241 (306)
|+++|||||++||+|+|+||+++|||||+|||+|+|+++++++|||+|||+|+|+||++||||+|++|||||||++++
T Consensus 160 k~vvVvGrS~iVGkPla~lL~~~~atVTichs~T~nl~~~~~~ADIvIsA~G~p~~i~~d~vk~gaiVIDvGin~~~~-- 237 (288)
T PRK10792 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLEN-- 237 (288)
T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCEEEEECCCCCCCCHHHCCCCCEEEEECCCCCCC--
T ss_conf 889995676634389999998669959862578878899998578976404886756888828985899802315588--
Q ss_pred CCCCEEECCCCHH-HHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6885684177567-873144008986986868999999999999999868
Q gi|254780506|r 242 LGKTVLVGDVADE-CKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLG 290 (306)
Q Consensus 242 ~~~~~~~GDvd~~-~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~ 290 (306)
+++||||||+ ++++|+|||||||||||||+||||+|+++||+++..
T Consensus 238 ---gklvGDVd~~~~~~~a~~iTPVPGGVGP~Tva~L~~N~v~aae~~~~ 284 (288)
T PRK10792 238 ---GKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACEEYHD 284 (288)
T ss_pred ---CCEECCCCHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf ---97735777799986474858999961699999999999999998608
No 2
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=719.72 Aligned_cols=281 Identities=52% Similarity=0.846 Sum_probs=273.6
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf 50053899999999999999999983699975999996798678999999999999839700002474111226699999
Q gi|254780506|r 3 SLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAV 82 (306)
Q Consensus 3 ~iLdGk~iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I 82 (306)
++||||++|++++++++++++.++++.++.|+|++|++||||+|.+|+++|.|+|+++||.++.++||++++|+|+++.|
T Consensus 1 ~~idGk~lA~~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I 80 (283)
T COG0190 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALI 80 (283)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 94235999999999999999998744688843899996797789999999999999819736898578757899999999
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 98523122125888346887113788986068743513215533888730477887567667999999998678772001
Q gi|254780506|r 83 LSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQ 162 (306)
Q Consensus 83 ~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk 162 (306)
.+||+|++|||||||+|||+|+|+++++++|+|+||||||||+|+|+|+.+ .+.|+||||+|||+||++| +++++||
T Consensus 81 ~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~-~i~l~Gk 157 (283)
T COG0190 81 DELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEY-GIDLRGK 157 (283)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCHHCC--CCCCCCCCHHHHHHHHHHH-CCCCCCC
T ss_conf 996089877579994778877788889860586778566696673532108--9987789899999999983-9987898
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 28996164420346899998620453312467653477642235736522443212201047662699831111126766
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQL 242 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~~~~~~ 242 (306)
++||||||++||||+|+||+++|||||+|||+|+|+.+++++|||+|+|+|+|+|+++||||||++|||||||++++
T Consensus 158 ~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~~--- 234 (283)
T COG0190 158 NVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND--- 234 (283)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC---
T ss_conf 89998998767679999998679989997577888789862389999954875645514135787899647754048---
Q ss_pred CCCEEECCCCHH-HHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 885684177567-8731440089869868689999999999999998688
Q gi|254780506|r 243 GKTVLVGDVADE-CKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGM 291 (306)
Q Consensus 243 ~~~~~~GDvd~~-~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~ 291 (306)
+++||||||+ ++++|+|||||||||||||+||||+|++++++++.+.
T Consensus 235 --~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~~ 282 (283)
T COG0190 235 --GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRGE 282 (283)
T ss_pred --CCEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf --835760468998875222278998647999999999999999987445
No 3
>KOG4230 consensus
Probab=100.00 E-value=0 Score=699.00 Aligned_cols=304 Identities=42% Similarity=0.687 Sum_probs=293.4
Q ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH
Q ss_conf 965005389999999999999999998-3699975999996798678999999999999839700002474111226699
Q gi|254780506|r 1 MGSLIDGKVVASVLTDKIAESVAFLKK-ETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLE 79 (306)
Q Consensus 1 Ma~iLdGk~iA~~i~~~lk~~i~~l~~-~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~ 79 (306)
|++||+||++|++++++++++|+.++. .+++.|.|++|+||++++|.+|+|+|.|+|+++||.+..++||++++|-|++
T Consensus 2 ~a~IL~Gk~la~kvr~~v~~eI~~ik~~~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~ell 81 (935)
T KOG4230 2 VAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGELL 81 (935)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHCCCCEEEECCCCCCCHHHHH
T ss_conf 10441608999999999999999988528998844789984586775201105566788629722784485312589999
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998523122125888346887113788986068743513215533888730477887567667999999998678772
Q gi|254780506|r 80 NAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDL 159 (306)
Q Consensus 80 ~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l 159 (306)
.+|..||+|++|||||||||||.|||++.+.++|+|+||||||+++|.|+|..++..+.|+||||.|||+||+++ ++.+
T Consensus 82 ~~I~~lNeD~tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a-~v~v 160 (935)
T KOG4230 82 REIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEA-GVFV 160 (935)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCHHHHHHHHHHC-CCCC
T ss_conf 999741689752428995547653465567650386335665453564255326898216425828899999974-9743
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 00128996164420346899998620453312467653477642235736522443212201047662699831111126
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINS 239 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~~~ 239 (306)
+||++||+|||.+||.|+|.||.+.|||||+|||+|+|+.+++++|||+|+|+|+|+|++.||+|||++|||||||++.|
T Consensus 161 ~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvpD 240 (935)
T KOG4230 161 AGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVPD 240 (935)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCEEEEECCCCCEEECCCCCCCCEEEECCCCCCCC
T ss_conf 56256997124235775999998559659985378710888732178899973886222034436874899745544689
Q ss_pred -CCCCCCEEECCCCHH-HHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf -766885684177567-873144008986986868999999999999999868898555643441013
Q gi|254780506|r 240 -PQLGKTVLVGDVADE-CKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQSIAKKT 305 (306)
Q Consensus 240 -~~~~~~~~~GDvd~~-~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~~~~~~~~~~~~ 305 (306)
++.++++++|||||| ++++||+|||||||||||||||||+|++++|+|++-.+..++.-+.||||+
T Consensus 241 ~~Kksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r~es~~~~~i~~~pl~l 308 (935)
T KOG4230 241 PSKKSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQREESKKKRKIDLLPLKL 308 (935)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 87766666765212676666640343478885527899999999999999987424667688875314
No 4
>KOG0089 consensus
Probab=100.00 E-value=0 Score=599.56 Aligned_cols=289 Identities=46% Similarity=0.720 Sum_probs=279.8
Q ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHH
Q ss_conf 96500538999999999999999999836999759999967986789999999999998397000024741112266999
Q gi|254780506|r 1 MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLEN 80 (306)
Q Consensus 1 Ma~iLdGk~iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~ 80 (306)
|+.+++||.+|..+++++.++++.+++.+|..|+|+.++||+||+|..|+.+|.|+|+++||.+..+.|+++.++++++.
T Consensus 7 ~~~viagk~~a~~i~~~i~~e~~~~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~ 86 (309)
T KOG0089 7 TAVVIAGKVAATFIRQEIANEVEGMKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELES 86 (309)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 34886227899999998888877777517888731699838984027889888879998530222125655456677999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99985231221258883468871137889860687435132155338887304778875676679999999986787720
Q gi|254780506|r 81 AVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLS 160 (306)
Q Consensus 81 ~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~ 160 (306)
.|.++|+|++|||||||+|+|.|+++++|+++++|+|||||||+.|.|+|.+.++.+.|+||||+||+++|+++ +|++-
T Consensus 87 ~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~-gI~~~ 165 (309)
T KOG0089 87 AIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERT-GIETY 165 (309)
T ss_pred HHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH-CCEEC
T ss_conf 99974589852258998646431008999742176656565531213121402456544677659999999971-97442
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH--------CCCEEECCCCCCC--HHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 012899616442034689999862--------0453312467653--477642235736522443212201047662699
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLLLSR--------NATVTMAHSKTKN--LPEICRTADILVVAVGRPRMVQVDWIKTGSLVI 230 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL~~~--------~atVti~hs~T~~--l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvI 230 (306)
||++||+|||.+||+|+|+||.++ +||||++|++|++ ++.+++.|||+|+|+|+|++++.||||||+.+|
T Consensus 166 GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vi 245 (309)
T KOG0089 166 GKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVI 245 (309)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEHHCCCCCCCCCCEEECCCEEE
T ss_conf 75689971432134348999742687312368613899965888267767776416452111787632235044286467
Q ss_pred EEEEEECCCCCCC-CCEEECCCCHH-HHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8311111267668-85684177567-873144008986986868999999999999999868
Q gi|254780506|r 231 DVGINRINSPQLG-KTVLVGDVADE-CKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLG 290 (306)
Q Consensus 231 DvGi~~~~~~~~~-~~~~~GDvd~~-~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~ 290 (306)
|+|||++.++... +.+++|||||| ++.+|++||||||||||||+||||+|++++|+|...
T Consensus 246 dvgin~v~dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~~ 307 (309)
T KOG0089 246 DVGINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFL 307 (309)
T ss_pred ECCCCCCCCCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 41687532666632578740023777654057421169987713089999879999988750
No 5
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=100.00 E-value=0 Score=459.31 Aligned_cols=167 Identities=60% Similarity=0.963 Sum_probs=159.8
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 74351321553388873047788756766799999999867877200128996164420346899998620453312467
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
|+|||||||++|+|+|+.++ +.|+||||+||++||++| +++++||+++|+|||++||+|+|+||+++|||||+|||+
T Consensus 1 P~KDVDGl~~~N~g~l~~~~--~~~~PcTp~ai~~ll~~~-~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~ 77 (168)
T cd01080 1 PEKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRY-GIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCCCCCHHHHHHHHCCC--CCCCCCCHHHHHHHHHHH-CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 99884789967654786599--988698499999999994-988778569998787300899999998489979997689
Q ss_pred CCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHH-HHHHCCEECCCCCCCCHHH
Q ss_conf 653477642235736522443212201047662699831111126766885684177567-8731440089869868689
Q gi|254780506|r 195 TKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADE-CKSVVGAITPVPGGVGPMT 273 (306)
Q Consensus 195 T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~-~~~~a~~iTPVPGGVGp~T 273 (306)
|+|+++++++|||+|||+|+|+||++||||||++|||||||++++. ++++++|||||| +.++|+|||||||||||||
T Consensus 78 T~~l~~~~~~ADIvIsA~G~~~li~~~~vk~gavvIDvGin~~~~~--~~~kl~GDvd~~~v~~~a~~iTPVPGGVGpmT 155 (168)
T cd01080 78 TKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPDK--SGGKLVGDVDFESAKEKASAITPVPGGVGPMT 155 (168)
T ss_pred CCCHHHHHHHCCEEEEECCCCCCCCHHHCCCCCEEEECCCCCCCCC--CCCEEECCCCHHHHHHHCEEECCCCCCCCHHH
T ss_conf 8897997410453554158766378999589988996665423348--89846377888999864638689999608999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780506|r 274 IAMLMANTVIAAY 286 (306)
Q Consensus 274 va~L~~N~v~aa~ 286 (306)
+||||+|+++||+
T Consensus 156 va~L~~N~v~aa~ 168 (168)
T cd01080 156 VAMLMKNTVEAAK 168 (168)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999829
No 6
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=100.00 E-value=0 Score=430.80 Aligned_cols=158 Identities=59% Similarity=1.000 Sum_probs=151.8
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHH
Q ss_conf 55338887304778875676679999999986787720012899616442034689999862045331246765347764
Q gi|254780506|r 123 HVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEIC 202 (306)
Q Consensus 123 ~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~ 202 (306)
||+|+|+|+.|+ ++|+||||+||++||++| +++++||+++|||||.+||+||++||+++|||||+|||+|+|+++++
T Consensus 1 hp~N~G~l~~g~--~~~~PcTp~ai~~lL~~~-~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVtichs~T~nl~~~~ 77 (159)
T pfam02882 1 HPINLGRLVLGE--PGFVPCTPRGIMELLKRY-GIDLAGKNVVVIGRSNIVGKPLALLLLNANATVTVCHSKTKDLAEIT 77 (159)
T ss_pred CCHHHHHHHCCC--CCCCCCCHHHHHHHHHHC-CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf 956155796699--999696499999999983-99857866999888731489999999877998999818999978963
Q ss_pred HHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHH-HHHHCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 2235736522443212201047662699831111126766885684177567-873144008986986868999999999
Q gi|254780506|r 203 RTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADE-CKSVVGAITPVPGGVGPMTIAMLMANT 281 (306)
Q Consensus 203 ~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~-~~~~a~~iTPVPGGVGp~Tva~L~~N~ 281 (306)
++|||+|+|+|+|+||++||||||++|||||||+.++ ++++|||||+ +.++|++||||||||||||+||||+|+
T Consensus 78 ~~ADIvI~A~G~p~~i~~~~ik~gavvIDvGi~~~~~-----gkl~GDvd~~~v~~~a~~iTPVPGGVGPmTva~L~~N~ 152 (159)
T pfam02882 78 READIVVVAVGKPGLIKADWVKPGAVVIDVGINRVEN-----GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNT 152 (159)
T ss_pred HCCCEEEEECCCCCCCCHHHCCCCCEEEEECCCCCCC-----CCEECCCCHHHHHHHCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 0034442315885505698858998899802206589-----96757877789996472868999950699999999999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780506|r 282 VIAAYRS 288 (306)
Q Consensus 282 v~aa~~~ 288 (306)
+++++||
T Consensus 153 v~a~~~~ 159 (159)
T pfam02882 153 VEAAKRQ 159 (159)
T ss_pred HHHHHCC
T ss_conf 9999749
No 7
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=100.00 E-value=0 Score=378.57 Aligned_cols=160 Identities=24% Similarity=0.406 Sum_probs=143.3
Q ss_pred CCCCHHHCCHHHHHHHHHCC-------CCCCCCCCCHHHHHHHHHHH--------CCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 74351321553388873047-------78875676679999999986--------7877200128996164420346899
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGD-------FTTGLVPCTPAGAILLIEQF--------KGCDLSGQHAVVIGRSNLFGKPMGQ 179 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~-------~~~~~~PcTp~av~~ll~~y--------~~i~l~Gk~vvVvGrs~~VG~Pla~ 179 (306)
|+||||||||+|+|+|+.+. ..+.|+||||+||++||++| ||++++||++||||||++||||+|+
T Consensus 1 P~KDVDGlhp~N~G~L~~~~~~~~~~~~~~~~iPCTP~gv~~LL~~~~i~~~~~~yg~~l~Gk~vvVIGRS~iVGkPla~ 80 (197)
T cd01079 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA 80 (197)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
T ss_conf 99775688978876676176533445677778778699999999971855433235778899989998987315488999
Q ss_pred HHHHHCCCEEE---------------------CCCCCCCHHHHHHHCCEEEEECCCCCC-CCCCCCCCCCEEEEEEEEEC
Q ss_conf 99862045331---------------------246765347764223573652244321-22010476626998311111
Q gi|254780506|r 180 LLLSRNATVTM---------------------AHSKTKNLPEICRTADILVVAVGRPRM-VQVDWIKTGSLVIDVGINRI 237 (306)
Q Consensus 180 lL~~~~atVti---------------------~hs~T~~l~~~~~~ADivIsAvG~p~~-i~~~~vk~gavvIDvGi~~~ 237 (306)
||+++|||||. +|+.+.++.+.+++|||+|+|+|+|+| ++.||+|||++|||||+++
T Consensus 81 LL~~~~ATVt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDIvI~avg~p~~~i~~~~vk~GaivIDvg~~~- 159 (197)
T cd01079 81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK- 159 (197)
T ss_pred HHHHCCCEEEEECCCCEEEEECCCCCCCEEEEECCCCHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCC-
T ss_conf 9973899677503442146404665221245641421005654234799998878776656675544896899816843-
Q ss_pred CCCCCCCCEEECCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 26766885684177567873144008986986868999999999999999868
Q gi|254780506|r 238 NSPQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLG 290 (306)
Q Consensus 238 ~~~~~~~~~~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~ 290 (306)
|++++++++|+++||| |||||+||||+||+++|+++.+
T Consensus 160 ------------~~~~~v~~~a~~itPv---VGPmTvAmLl~Ntv~~~~~~h~ 197 (197)
T cd01079 160 ------------NFEPSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQHH 197 (197)
T ss_pred ------------CCCHHHHHCCCEECCC---CCHHHHHHHHHHHHHHHHHHHC
T ss_conf ------------6674563003133898---8989999999999999998509
No 8
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=100.00 E-value=0 Score=358.90 Aligned_cols=139 Identities=33% Similarity=0.518 Sum_probs=131.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECC
Q ss_conf 77887567667999999998678772001289961644203468999986204533124676534776422357365224
Q gi|254780506|r 134 DFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVG 213 (306)
Q Consensus 134 ~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG 213 (306)
...+.|+|||+.|++++|++| +++++||+++|||||.+||+|||+||+++|||||+|||+|+|+++++++|||+|||+|
T Consensus 2 PCTP~~ip~t~~av~~ll~~y-~i~l~Gk~vvVvGrS~~VG~Pla~lL~~~~atVt~~hs~t~~l~~~~~~ADIvI~a~G 80 (140)
T cd05212 2 PCTPLFVSPVAKAVKELLNKE-GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCEEEECCC
T ss_conf 988750067799999999980-9999999999999981249999999997889899946999598998523499998168
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4321220104766269983111112676688568417756787314400898698686899999999999999
Q gi|254780506|r 214 RPRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAY 286 (306)
Q Consensus 214 ~p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~ 286 (306)
+|+||++||+|||++|||||+|+++ | +++.++|+++|||||||||||+||||+|+++|++
T Consensus 81 ~p~~i~~~~vk~GavvIDvGi~~~~----------~---~~v~~~a~~iTPVPGGVGP~Tva~L~~N~v~a~k 140 (140)
T cd05212 81 KPEKVPTEWIKPGATVINCSPTKLS----------G---DDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140 (140)
T ss_pred CCCCCCHHHCCCCCEEEEECCCCCC----------C---HHHHCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7672789776799889980377567----------7---2144165287789995469999999999999709
No 9
>pfam00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain.
Probab=100.00 E-value=2.8e-33 Score=252.21 Aligned_cols=117 Identities=46% Similarity=0.727 Sum_probs=114.5
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf 50053899999999999999999983699975999996798678999999999999839700002474111226699999
Q gi|254780506|r 3 SLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAV 82 (306)
Q Consensus 3 ~iLdGk~iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I 82 (306)
+|||||++|+.++++++++++.++.+ |++|+|++|+||+||+|.+|+++|+|+|+++||.+++++||++++|+++++.|
T Consensus 1 ~iLdGk~vA~~i~~~l~~~i~~l~~~-g~~P~Laii~vg~~~~s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~~l~~~I 79 (117)
T pfam00763 1 KILDGKALAKKIREELKEEVAKLKEK-GVTPKLAVILVGDDPASQVYVRSKRKAAEELGIESELIRLPEDITEEELLALI 79 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 90326999999999999999999857-99971899984897567999999999999728716998777633499999999
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 98523122125888346887113788986068743513
Q gi|254780506|r 83 LSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD 120 (306)
Q Consensus 83 ~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVD 120 (306)
++||+|++|||||||+|||+|+|+++++++|+|+||||
T Consensus 80 ~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVD 117 (117)
T pfam00763 80 EKLNADPSVHGILVQLPLPKHIDEEKILNAIDPEKDVD 117 (117)
T ss_pred HHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 99967887887988388988879999986279656999
No 10
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.77 E-value=1.1e-07 Score=74.21 Aligned_cols=223 Identities=19% Similarity=0.240 Sum_probs=136.2
Q ss_pred EECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC---CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH---------
Q ss_conf 96798678999999999999839700002474111---226699999985231221258883468871137---------
Q gi|254780506|r 39 LVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI---SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSE--------- 106 (306)
Q Consensus 39 lvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~---se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~--------- 106 (306)
.+|-|. =..|+- +...+.|-....+-|+..- +........++.=+ +.+.|+ +|+|.--|.
T Consensus 7 viGGD~-Rq~~l~---~~L~~~g~~V~~~gf~~~~~~~~~~~~~~~~~~~~~--~~d~iI--lPvpg~~d~g~i~~~~~~ 78 (296)
T PRK08306 7 VIGGDA-RQLELI---RKLVELGAKVSLVGFDQLDHGFTGVAKCSSLEEALS--DVDVII--LPVPGTNDEGEVDTVFSN 78 (296)
T ss_pred EECCCH-HHHHHH---HHHHHCCCEEEEEECCCCCCCCCCEEEECCHHHHHH--CCCEEE--ECCCCCCCCCEEECCCCC
T ss_conf 978758-999999---999977997999835765556676177346788872--399999--788322589638553467
Q ss_pred ------HHHHHHCCCCC-CHHHCCHHHHHHHHHCCC--------CCCC----CCCCHHHHHH-HHHHHCCCCCCCCEEEE
Q ss_conf ------88986068743-513215533888730477--------8875----6766799999-99986787720012899
Q gi|254780506|r 107 ------QSIIQSIVPEK-DVDGLHVVNAGKVMIGDF--------TTGL----VPCTPAGAIL-LIEQFKGCDLSGQHAVV 166 (306)
Q Consensus 107 ------~~i~~~I~p~K-DVDGl~~~N~g~l~~~~~--------~~~~----~PcTp~av~~-ll~~y~~i~l~Gk~vvV 166 (306)
+.+++.+.|.- =.=|..+-.+-++..... .+.+ .-+|+.|++. .+++ ..+.+.|-+++|
T Consensus 79 ~~~~l~~~~~~~l~~~~~vf~G~~~~~l~~~~~~~~~~~~d~~e~d~vAi~NaipTAEGai~~ai~~-tp~ti~gs~~lV 157 (296)
T PRK08306 79 EKLVLTKELLEKTPEHCTIFSGIANPYLKELAETTGRKLIELFERDDVAIYNSIPTAEGAIMMAIEH-TPITIHGSNVLV 157 (296)
T ss_pred CCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHC-CCCCCCCCCEEE
T ss_conf 8763229999746999879995599899999997598367620020355562701489999999965-996324765899
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEECCCCC----------------CCHHHHHHHCCEEEEECCCCCCCCCCCC---CCCC
Q ss_conf 61644203468999986204533124676----------------5347764223573652244321220104---7662
Q gi|254780506|r 167 IGRSNLFGKPMGQLLLSRNATVTMAHSKT----------------KNLPEICRTADILVVAVGRPRMVQVDWI---KTGS 227 (306)
Q Consensus 167 vGrs~~VG~Pla~lL~~~~atVti~hs~T----------------~~l~~~~~~ADivIsAvG~p~~i~~~~v---k~ga 227 (306)
+|-++ +|+.+|.+|...||.|+++-++. .+|.+++.++|++|-.+..+ .++.+++ ++++
T Consensus 158 lG~Gr-~G~~lA~~l~~lGA~V~V~aR~~~~~a~a~~~G~~~v~~~~L~~~~~~~D~i~NTIPa~-Vlt~~~l~~~~~~a 235 (296)
T PRK08306 158 LGFGR-TGMTLARTLKALGAKVKVGARKSAHLARITEMGYSPVHLSELAEEVGEADIIFNTIPAL-VLTKNVLSKMPPHA 235 (296)
T ss_pred ECCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEECCCHH-HCCHHHHHCCCCCC
T ss_conf 89868-99999999997799699997999999999976985871999997735699999898525-43999994189996
Q ss_pred EEEEEEEEECCCCCCCCCEEECCCCHHHHHH----CCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6998311111267668856841775678731----44008986986868999999999999
Q gi|254780506|r 228 LVIDVGINRINSPQLGKTVLVGDVADECKSV----VGAITPVPGGVGPMTIAMLMANTVIA 284 (306)
Q Consensus 228 vvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~----a~~iTPVPGGVGp~Tva~L~~N~v~a 284 (306)
++||..-.+ |-+||++.++ |.+--.-||=|-|.|..-.+.+++..
T Consensus 236 vIIDLAS~P------------GG~Df~~A~~~Gika~lapgLPGk~APkTag~Ila~~i~~ 284 (296)
T PRK08306 236 LIIDLASKP------------GGTDFEYAKKLGIKALLAPGLPGKVAPKTAGQILANVLSN 284 (296)
T ss_pred EEEEECCCC------------CCCCHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999947799------------9738899998398599728999731715399999999999
No 11
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=98.54 E-value=1.3e-06 Score=66.79 Aligned_cols=128 Identities=21% Similarity=0.410 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC----------------CCHHHHHH
Q ss_conf 67667999999998678772001289961644203468999986204533124676----------------53477642
Q gi|254780506|r 140 VPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT----------------KNLPEICR 203 (306)
Q Consensus 140 ~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T----------------~~l~~~~~ 203 (306)
+|..--|+|.-++|. .+-+-|-|+.|+|-+| +|+-+|++|..-||.|.+|=+++ ++|++.+.
T Consensus 132 IPtaEGAimMA~e~t-d~TIHgS~v~VlGfGR-tG~tiAr~f~aLGA~V~V~AR~~~dlARI~E~g~~P~~~~~L~~~v~ 209 (288)
T TIGR02853 132 IPTAEGAIMMAIEHT-DFTIHGSNVMVLGFGR-TGMTIARTFSALGARVSVGARSSADLARITEMGLEPVPLNKLEEKVA 209 (288)
T ss_pred CCCHHHHHHHHHHCC-CCCEECCEEEEECCCC-HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 755678999997248-9625013457884470-56899999972698057531783678999996068827167887650
Q ss_pred HCCEEEEECCCCCC-CCCCC---CCCCCEEEEEEEEECCCCCCCCCEEECCCCHHHHH---HCCEECC-CCCCCCHHHHH
Q ss_conf 23573652244321-22010---47662699831111126766885684177567873---1440089-86986868999
Q gi|254780506|r 204 TADILVVAVGRPRM-VQVDW---IKTGSLVIDVGINRINSPQLGKTVLVGDVADECKS---VVGAITP-VPGGVGPMTIA 275 (306)
Q Consensus 204 ~ADivIsAvG~p~~-i~~~~---vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~---~a~~iTP-VPGGVGp~Tva 275 (306)
++||||=-+ |.+ ++++- .+..|+|||+.-++ |=+||+.++ ..+.+-| -||=|=|-|.=
T Consensus 210 e~DIviNTi--PaLvlt~~~l~~lp~~AviiDLAS~P------------GGtDF~yAk~~Gi~A~LAPGLPGiVAPkTAG 275 (288)
T TIGR02853 210 EIDIVINTI--PALVLTKDVLSKLPKHAVIIDLASKP------------GGTDFEYAKKRGIKALLAPGLPGIVAPKTAG 275 (288)
T ss_pred CCCEEEECC--CCCCCCHHHHHHCCCCCEEEEECCCC------------CCCCHHHHHHCCCEEEECCCCCCCCCCHHHH
T ss_conf 002477067--63003658995268584899732784------------8737698986298289718787830723567
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780506|r 276 MLMANTVI 283 (306)
Q Consensus 276 ~L~~N~v~ 283 (306)
-++-|++-
T Consensus 276 kIlA~VL~ 283 (288)
T TIGR02853 276 KILANVLS 283 (288)
T ss_pred HHHHHHHH
T ss_conf 89999999
No 12
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=98.52 E-value=4.6e-07 Score=69.99 Aligned_cols=92 Identities=23% Similarity=0.287 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC-------------CCCCHHHHHHHCCEEE
Q ss_conf 679999999986787720012899616442034689999862045331246-------------7653477642235736
Q gi|254780506|r 143 TPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS-------------KTKNLPEICRTADILV 209 (306)
Q Consensus 143 Tp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs-------------~T~~l~~~~~~ADivI 209 (306)
|-..++.-+.+-.++-+.||++||+|.+. +||-.|+-+...||.|++|-- +.-++.+.++.+||+|
T Consensus 192 tgqS~~dgi~r~Tn~liaGK~vVV~GYG~-cGkG~A~r~rglGA~V~VtEvDPi~ALeA~mDGf~V~~m~eaa~~~Difv 270 (430)
T pfam05221 192 CRESLPDGIKRATDVMIAGKVAVVCGYGD-VGKGCAASLRGQGARVIVTEIDPICALQAAMEGYQVVTLEEVVKDADIFV 270 (430)
T ss_pred CHHHHHHHHHHHHCCEECCCEEEEECCCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHCCEEE
T ss_conf 12309999998617134276799955675-35789999842798899954785899999855884577999985599999
Q ss_pred EECCCCCCCCCCCC---CCCCEEEEEEEE
Q ss_conf 52244321220104---766269983111
Q gi|254780506|r 210 VAVGRPRMVQVDWI---KTGSLVIDVGIN 235 (306)
Q Consensus 210 sAvG~p~~i~~~~v---k~gavvIDvGi~ 235 (306)
+|+|..+.|+.+++ |+|+++-+.|-.
T Consensus 271 T~TG~~~vI~~~H~~~MKdgaIl~N~GHf 299 (430)
T pfam05221 271 TTTGCVDIIVGRHFMNMKKDAIVCNIGHF 299 (430)
T ss_pred EECCCCCCCCHHHHHHHCCCEEEEECCCC
T ss_conf 93698875689999864178499956887
No 13
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.52 E-value=4e-07 Score=70.38 Aligned_cols=92 Identities=24% Similarity=0.353 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC-------------CCCCHHHHHHHCCEEE
Q ss_conf 679999999986787720012899616442034689999862045331246-------------7653477642235736
Q gi|254780506|r 143 TPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS-------------KTKNLPEICRTADILV 209 (306)
Q Consensus 143 Tp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs-------------~T~~l~~~~~~ADivI 209 (306)
|-..++.-+.+-.++-+.||++||+|.+. |||-+|+-+...||.|++|-- +.-++.+.++.+||+|
T Consensus 184 tgqS~~dgi~r~Tn~liaGK~vVV~GYG~-~GkG~A~r~rglGA~V~VtEvDPi~ALeA~mDGf~V~~m~~a~~~~Difi 262 (413)
T cd00401 184 CRESLIDGIKRATDVMIAGKVAVVAGYGD-VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFV 262 (413)
T ss_pred CCHHHHHHHHHHHHHEECCCEEEEECCCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHCCEEE
T ss_conf 32108999998742121377799945776-35688998865898899971775889999856894577999972389999
Q ss_pred EECCCCCCCCCCCC---CCCCEEEEEEEE
Q ss_conf 52244321220104---766269983111
Q gi|254780506|r 210 VAVGRPRMVQVDWI---KTGSLVIDVGIN 235 (306)
Q Consensus 210 sAvG~p~~i~~~~v---k~gavvIDvGi~ 235 (306)
+|+|..+.|+.+++ |+|+++-++|-.
T Consensus 263 TaTGn~~VI~~eH~~~MKdgaIl~N~GHf 291 (413)
T cd00401 263 TTTGNKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred EECCCCCCCCHHHHHHHCCCEEEEECCCC
T ss_conf 93388773739999984588699806777
No 14
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.50 E-value=5e-07 Score=69.72 Aligned_cols=97 Identities=27% Similarity=0.479 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCC-----------------CCHHHHHHH
Q ss_conf 67999999998678772001289961644203468999986204-533124676-----------------534776422
Q gi|254780506|r 143 TPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKT-----------------KNLPEICRT 204 (306)
Q Consensus 143 Tp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T-----------------~~l~~~~~~ 204 (306)
-+.+++.+.+...+ +++|++++|||-|. .|+-.+..|.++|+ .++++++.- .++.+.+.+
T Consensus 165 i~s~Av~la~~~~~-~l~~~~vlviGaGe-m~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~l~~~l~~ 242 (429)
T PRK00045 165 VASAAVELAKKIFG-DLSGKKVLVIGAGE-MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGAEAIPLEELPEALAE 242 (429)
T ss_pred HHHHHHHHHHHHCC-CCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHH
T ss_conf 89999999998647-81206599976748-99999999985599849997586778999999759889749999999965
Q ss_pred CCEEEEECCCCCC-CCCCCCCC--------CCEEEEEEEEECCCCC
Q ss_conf 3573652244321-22010476--------6269983111112676
Q gi|254780506|r 205 ADILVVAVGRPRM-VQVDWIKT--------GSLVIDVGINRINSPQ 241 (306)
Q Consensus 205 ADivIsAvG~p~~-i~~~~vk~--------gavvIDvGi~~~~~~~ 241 (306)
+||||||+|-|+. +++++++. .-++||.++-+.-++.
T Consensus 243 ~DvvisaT~s~~~ii~~~~~~~~~~~r~~~~~~iiDLavPRdidp~ 288 (429)
T PRK00045 243 ADIVISSTAAPHPIITKGMVERALKQRRHRPLLLIDLAVPRDIEPE 288 (429)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
T ss_conf 8999994489975027999999987346995699961688777443
No 15
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=98.48 E-value=4.2e-07 Score=70.26 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=72.2
Q ss_pred HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC-------------CCCCHHHHHHHCCEEEEECCCCCCC
Q ss_conf 986787720012899616442034689999862045331246-------------7653477642235736522443212
Q gi|254780506|r 152 EQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS-------------KTKNLPEICRTADILVVAVGRPRMV 218 (306)
Q Consensus 152 ~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs-------------~T~~l~~~~~~ADivIsAvG~p~~i 218 (306)
.+..++-+.||++||+|.+. +||-+|+-|...||.|+++.. ++..+.+..+.|||+|+|+|..+.+
T Consensus 14 ~r~tn~llaGk~vvV~GYG~-~GkGvA~~~rg~Ga~V~V~EvDPi~aleA~mdGf~V~~~~ea~~~aDi~VTaTG~~~vi 92 (162)
T pfam00670 14 KRATDVMIAGKVAVVCGYGD-VGKGCAASLKGQGARVIVTEIDPICALQAAMEGFQVVTLEEVVKKADIFVTTTGNKDII 92 (162)
T ss_pred HHHHCCEECCCEEEEECCCC-CCHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHHCCCEEEECCCCCCCC
T ss_conf 88617657487899967876-67779998622999899994793069999864995478889860499999924897747
Q ss_pred CCCC---CCCCCEEEEEEEE
Q ss_conf 2010---4766269983111
Q gi|254780506|r 219 QVDW---IKTGSLVIDVGIN 235 (306)
Q Consensus 219 ~~~~---vk~gavvIDvGi~ 235 (306)
+.++ .|+|+++-++|=.
T Consensus 93 ~~eh~~~mKdgaIlaN~GHf 112 (162)
T pfam00670 93 TGEHMAKMKNDAIVCNIGHF 112 (162)
T ss_pred CHHHHHHHCCCEEEECCCCC
T ss_conf 39999984488699877756
No 16
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=98.45 E-value=4.6e-07 Score=69.99 Aligned_cols=92 Identities=27% Similarity=0.542 Sum_probs=72.2
Q ss_pred HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCC--------------------CCHHHHHHHCCEEEE
Q ss_conf 98678772001289961644203468999986204-533124676--------------------534776422357365
Q gi|254780506|r 152 EQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKT--------------------KNLPEICRTADILVV 210 (306)
Q Consensus 152 ~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T--------------------~~l~~~~~~ADivIs 210 (306)
+...+ +++||+++|||.|. .|+.++..|.++|+ .|+++++.- .++.+.+.++|+||+
T Consensus 4 ~~~~~-~l~~~~vlVIGaG~-~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~ 81 (134)
T pfam01488 4 KKIFG-DLKGKKVLLIGAGE-MARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLAEADIVIS 81 (134)
T ss_pred HHHHC-CCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEE
T ss_conf 77638-81489899999609-99999999997599889995475789999999849972589851354413631999999
Q ss_pred ECCCCC-CCCCCCCCC---CCEEEEEEEEECCCCCCCCCEEECCCCHHHHHH
Q ss_conf 224432-122010476---626998311111267668856841775678731
Q gi|254780506|r 211 AVGRPR-MVQVDWIKT---GSLVIDVGINRINSPQLGKTVLVGDVADECKSV 258 (306)
Q Consensus 211 AvG~p~-~i~~~~vk~---gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~ 258 (306)
|++.|+ +|+++++++ ..++||.++-+ |||+++.+.
T Consensus 82 aT~s~~~ii~~~~~~~~~~~~~iiDLavPr-------------nvd~~v~~l 120 (134)
T pfam01488 82 ATSAPTPIITKEMVEEALKGLLFVDIAVPR-------------DIEPEVGEL 120 (134)
T ss_pred ECCCCCCEECHHHHHHCCCCEEEEEECCCC-------------CCCHHHCCC
T ss_conf 259997364899997443985999834788-------------866545456
No 17
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.43 E-value=5.6e-07 Score=69.40 Aligned_cols=78 Identities=33% Similarity=0.476 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHH---CCCCCCCCEEEEECCCCCCHHHHHHHHHHH-CCCEEECCCCCCCHHHHHHHCCEEEEECCCCCC
Q ss_conf 6679999999986---787720012899616442034689999862-045331246765347764223573652244321
Q gi|254780506|r 142 CTPAGAILLIEQF---KGCDLSGQHAVVIGRSNLFGKPMGQLLLSR-NATVTMAHSKTKNLPEICRTADILVVAVGRPRM 217 (306)
Q Consensus 142 cTp~av~~ll~~y---~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~-~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~ 217 (306)
||+.+++++++.- .+.+++|++++|+|++. +|++++.||... +++|++|++ ||+|+|++.+..
T Consensus 1 ~Ta~~~v~~l~~~~~~~~~~l~~~~v~v~G~G~-vg~~ia~ll~~~~~k~V~~~d~------------Di~v~~t~~~~~ 67 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE-VGKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP 67 (86)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEECCC------------CEEEECCCCCCC
T ss_conf 951348999999999848775675899977860-4289999999817970787155------------528860577871
Q ss_pred CCC---CCCCCCCEEEEE
Q ss_conf 220---104766269983
Q gi|254780506|r 218 VQV---DWIKTGSLVIDV 232 (306)
Q Consensus 218 i~~---~~vk~gavvIDv 232 (306)
+.+ .+++++.+|+|.
T Consensus 68 ~~~~~~~~~~~~~vv~~~ 85 (86)
T cd05191 68 VLEEATAKINEGAVVIDL 85 (86)
T ss_pred CHHHHHHHCCCCCEEEEC
T ss_conf 278776421687188853
No 18
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.42 E-value=7.3e-07 Score=68.57 Aligned_cols=92 Identities=24% Similarity=0.331 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC-------------CCCCHHHHHHHCCEEE
Q ss_conf 679999999986787720012899616442034689999862045331246-------------7653477642235736
Q gi|254780506|r 143 TPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS-------------KTKNLPEICRTADILV 209 (306)
Q Consensus 143 Tp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs-------------~T~~l~~~~~~ADivI 209 (306)
|-..++.-+.+..++-+.||++||+|.+. |||-.|+-+...||.|++|-. +.-.+.+.++.+||+|
T Consensus 236 tgqS~~dgi~raTn~liaGK~vVV~GYG~-~GkG~A~~~rg~GA~ViVtEiDPi~ALqA~MdGf~V~~m~ea~~~~DifV 314 (476)
T PTZ00075 236 CRESLVDGIKRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVLLEDVVETADIFV 314 (476)
T ss_pred HHHHHHHHHHHHHCCEECCCEEEEEECCC-CCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHCCEEE
T ss_conf 13659999998628345475899950453-01214766535897899961680789998745878756999883399999
Q ss_pred EECCCCCCCCCCCC---CCCCEEEEEEEE
Q ss_conf 52244321220104---766269983111
Q gi|254780506|r 210 VAVGRPRMVQVDWI---KTGSLVIDVGIN 235 (306)
Q Consensus 210 sAvG~p~~i~~~~v---k~gavvIDvGi~ 235 (306)
+|+|..+.|+.+++ |+|+++-+.|-.
T Consensus 315 TaTGn~~VI~~~H~~~MKdgaIl~N~GHf 343 (476)
T PTZ00075 315 TATGNDDIITLEHFPRMKDDAIVGNIGHF 343 (476)
T ss_pred EECCCCCCCCHHHHHHHCCCEEEEECCCC
T ss_conf 93499774689999865378099945878
No 19
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.41 E-value=7e-07 Score=68.72 Aligned_cols=88 Identities=25% Similarity=0.360 Sum_probs=73.8
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC-------------CCCCHHHHHHHCCEEEEECC
Q ss_conf 99999986787720012899616442034689999862045331246-------------76534776422357365224
Q gi|254780506|r 147 AILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS-------------KTKNLPEICRTADILVVAVG 213 (306)
Q Consensus 147 v~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs-------------~T~~l~~~~~~ADivIsAvG 213 (306)
++.-+.+..++-+.||++||+|.+. |||-.|+-+...||.|++|-- +...+.+..+.+||+|+|+|
T Consensus 194 ~~dgi~r~Tn~llaGK~vVV~GYG~-~GkG~A~~arg~GA~ViVtEvDPi~ALeA~mDGf~V~~~~~a~~~~DifiT~TG 272 (427)
T PRK05476 194 LLDGIKRATNVLIAGKVVVVAGYGD-VGKGSAQRLRGLGARVIVTEIDPICALQAAMDGFEVMTMEEAAEKADIFVTATG 272 (427)
T ss_pred HHHHHHHHHCCEECCCEEEEECCCC-CCCHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECC
T ss_conf 9999998735212573799955665-560089987418987999804737999988627835658998620899999048
Q ss_pred CCCCCCCCCC---CCCCEEEEEEEE
Q ss_conf 4321220104---766269983111
Q gi|254780506|r 214 RPRMVQVDWI---KTGSLVIDVGIN 235 (306)
Q Consensus 214 ~p~~i~~~~v---k~gavvIDvGi~ 235 (306)
..+.|+.+++ |+|+++-+.|-.
T Consensus 273 ~~~vI~~~h~~~MKdgaIl~N~GHf 297 (427)
T PRK05476 273 NKDVITAEHMEAMKDGAIVCNIGHF 297 (427)
T ss_pred CCCCCCHHHHHHHCCCEEEECCCCC
T ss_conf 9572489999850788299767777
No 20
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.32 E-value=3.6e-06 Score=63.72 Aligned_cols=93 Identities=26% Similarity=0.446 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCC-----------------CCHHHHHHH
Q ss_conf 679999999986787720012899616442034689999862045-33124676-----------------534776422
Q gi|254780506|r 143 TPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKT-----------------KNLPEICRT 204 (306)
Q Consensus 143 Tp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T-----------------~~l~~~~~~ 204 (306)
-+.+++++.++.. -++++|+++|||-|. .|+=.+..|.++|+. ++++++.- .++.+.+.+
T Consensus 161 v~~~av~~a~~~~-~~l~~~~vLviGaGe-m~~l~~~~L~~~g~~~i~v~nRt~~ra~~la~~~g~~~~~~~~l~~~l~~ 238 (311)
T cd05213 161 ISSAAVELAEKIF-GNLKGKKVLVIGAGE-MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNE 238 (311)
T ss_pred HHHHHHHHHHHHH-CCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHH
T ss_conf 9999999999871-872116799986879-99999999996599825997686789999999749899729999999976
Q ss_pred CCEEEEECCCCCC-CCCCCC-C----CCCEEEEEEEEEC
Q ss_conf 3573652244321-220104-7----6626998311111
Q gi|254780506|r 205 ADILVVAVGRPRM-VQVDWI-K----TGSLVIDVGINRI 237 (306)
Q Consensus 205 ADivIsAvG~p~~-i~~~~v-k----~gavvIDvGi~~~ 237 (306)
+||||||+|.|++ ++.+.+ + ..-++||.++-+.
T Consensus 239 ~DvvisaT~s~~~~~~~~~~~~~~~~~~~~iiDLavPRd 277 (311)
T cd05213 239 ADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 899999279996203599997534799769999179998
No 21
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.28 E-value=6e-06 Score=62.19 Aligned_cols=97 Identities=21% Similarity=0.370 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCC------------------CCHHHHHH
Q ss_conf 679999999986787720012899616442034689999862045-33124676------------------53477642
Q gi|254780506|r 143 TPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKT------------------KNLPEICR 203 (306)
Q Consensus 143 Tp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T------------------~~l~~~~~ 203 (306)
-+.+++.+.+... -+++||+++|||.|. .|+-.+.-|.++|+. ++++++.- .++.+.+.
T Consensus 164 v~~~Av~la~~~~-~~l~~~~vlvvGaGe-m~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~~l~~~l~ 241 (414)
T PRK13940 164 VAFSAITLAKRQL-DNISSKNVLIIGAGQ-TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIK 241 (414)
T ss_pred HHHHHHHHHHHHC-CCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 8999999999862-871228389966864-78999999997699879994575677999999708885016999999986
Q ss_pred HCCEEEEECCCCCC-CCCCCCCCC-CEEEEEEEEECCCCC
Q ss_conf 23573652244321-220104766-269983111112676
Q gi|254780506|r 204 TADILVVAVGRPRM-VQVDWIKTG-SLVIDVGINRINSPQ 241 (306)
Q Consensus 204 ~ADivIsAvG~p~~-i~~~~vk~g-avvIDvGi~~~~~~~ 241 (306)
+|||||||+|.|++ ++.++++.. -++||.++-+.-++.
T Consensus 242 ~aDivisaT~a~~~ii~~~~~~~~p~~~iDLavPRdidp~ 281 (414)
T PRK13940 242 KADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIPQALDPK 281 (414)
T ss_pred HCCEEEEECCCCHHHCCHHHHCCCCEEEEEECCCCCCCHH
T ss_conf 3887998169824440486645797589984588888843
No 22
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.21 E-value=5e-06 Score=62.76 Aligned_cols=149 Identities=18% Similarity=0.314 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 22669999998523122125888346887113788986068743513215533888730477887567667999999998
Q gi|254780506|r 74 SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQ 153 (306)
Q Consensus 74 se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~ 153 (306)
.|.|++.+++..=.-..=.| .+.+.++ .-...+|...|-|---|..+ .+-+. -+-+++++.++
T Consensus 109 GE~QILGQVK~Ay~~a~~~g-----~~g~~L~-~lFqkAi~~gKrvRseT~I~----------~~~VS-i~saAv~lA~~ 171 (414)
T COG0373 109 GETQILGQVKDAYAKAQENG-----TLGKVLN-RLFQKAISVGKRVRSETGIG----------KGAVS-ISSAAVELAKR 171 (414)
T ss_pred CCHHHHHHHHHHHHHHHHCC-----CCHHHHH-HHHHHHHHHHHHHHCCCCCC----------CCCCC-HHHHHHHHHHH
T ss_conf 86999999999999999819-----8528999-99999998777641014778----------88612-39999999999
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCEEECCCCC-----------------CCHHHHHHHCCEEEEECCCC
Q ss_conf 67877200128996164420346899998620-4533124676-----------------53477642235736522443
Q gi|254780506|r 154 FKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRN-ATVTMAHSKT-----------------KNLPEICRTADILVVAVGRP 215 (306)
Q Consensus 154 y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~-atVti~hs~T-----------------~~l~~~~~~ADivIsAvG~p 215 (306)
.. -++++|++++||.|. .|.=.|..|.++| ..||+|++.- .++.+++.++||||||+|-|
T Consensus 172 ~~-~~L~~~~vlvIGAGe-m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 172 IF-GSLKDKKVLVIGAGE-MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred HH-CCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEECHHHHHHHHHHCCEEEEECCCC
T ss_conf 83-654467699986518-9999999998589877999758789999999983870221877887652079999906998
Q ss_pred CC-CCCCCCCCC------CEEEEEEEEECCCCC
Q ss_conf 21-220104766------269983111112676
Q gi|254780506|r 216 RM-VQVDWIKTG------SLVIDVGINRINSPQ 241 (306)
Q Consensus 216 ~~-i~~~~vk~g------avvIDvGi~~~~~~~ 241 (306)
+. ++.+++... -++||.+.-+.-++.
T Consensus 250 ~~ii~~~~ve~a~~~r~~~livDiavPRdie~~ 282 (414)
T COG0373 250 HPIITREMVERALKIRKRLLIVDIAVPRDVEPE 282 (414)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 554078889988741167599982699998722
No 23
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=98.17 E-value=8.7e-06 Score=61.10 Aligned_cols=171 Identities=22% Similarity=0.329 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996798678999999999999839700002474111226699999985231221258883468871137889860687
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVP 115 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p 115 (306)
..+..||+. |+..-|.| .|+++-++ -|.+++.++++-=....=.|. . +.+=++-...|+..
T Consensus 89 ~~~~~~e~A-----V~HLfrVA--sGLdS~V~------GE~QILGQvk~ay~~a~~~~~-----~-g~~L~rl~~kA~~v 149 (436)
T TIGR01035 89 LYILLGESA-----VEHLFRVA--SGLDSMVV------GETQILGQVKNAYKVAQEEKT-----V-GKVLERLFKKALSV 149 (436)
T ss_pred EEEEECHHH-----HHHHHHHH--CCCCCCCC------CCHHHHHHHHHHHHHHHHCCC-----C-HHHHHHHHHHHHHH
T ss_conf 777517789-----99999985--12122010------311288899999999873587-----1-06899999999877
Q ss_pred CCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHC-CCEEECC
Q ss_conf 4351321553388873047788756766799999999867877--200128996164420346899998620-4533124
Q gi|254780506|r 116 EKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCD--LSGQHAVVIGRSNLFGKPMGQLLLSRN-ATVTMAH 192 (306)
Q Consensus 116 ~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~--l~Gk~vvVvGrs~~VG~Pla~lL~~~~-atVti~h 192 (306)
.|=|=--|..+.|- ++- .-|+++|-++--| + |+||++++||-|. -|.=.+.-|.++| ..|+|.+
T Consensus 150 gkRVR~ET~I~~~a----------VSv-ssAAVelA~~ifG-~erL~~~~~LliGAGe-Mg~Lva~~L~~~~v~~~~i~N 216 (436)
T TIGR01035 150 GKRVRTETDISKGA----------VSV-SSAAVELAEKIFG-SERLKGKKVLLIGAGE-MGELVAKHLREKGVGKVLIAN 216 (436)
T ss_pred HHHHCCCCCCCCCC----------CCH-HHHHHHHHHHHHC-CCCCCCCEEEEEECCH-HHHHHHHHHHHCCCCEEEEEC
T ss_conf 35421204668885----------001-2777789998725-6211664189982745-799999999648952898855
Q ss_pred CCC------------------C-----CHHHHHHHCCEEEEECCCCCC-CCCCCCCC------------CCEEEEEEEEE
Q ss_conf 676------------------5-----347764223573652244321-22010476------------62699831111
Q gi|254780506|r 193 SKT------------------K-----NLPEICRTADILVVAVGRPRM-VQVDWIKT------------GSLVIDVGINR 236 (306)
Q Consensus 193 s~T------------------~-----~l~~~~~~ADivIsAvG~p~~-i~~~~vk~------------gavvIDvGi~~ 236 (306)
+.- . +|.++++.|||||||+|-|++ ++.+|+.. -.++||.+.=|
T Consensus 217 Rt~~rA~~LA~e~~~P~~~~f~~La~~~L~~~L~~~DivissTgA~~pi~~~~~~e~a~~~Rr~de~~~pl~~~DIAvPR 296 (436)
T TIGR01035 217 RTYERAEKLAKELGGPEAVKFEALALEKLEEALAEADIVISSTGAPEPIVSKEDVERALKERRRDEAARPLFIVDIAVPR 296 (436)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 67789999998707866454445548999999742889998557653100203489999972220015886999758899
Q ss_pred CC
Q ss_conf 12
Q gi|254780506|r 237 IN 238 (306)
Q Consensus 237 ~~ 238 (306)
.-
T Consensus 297 dv 298 (436)
T TIGR01035 297 DV 298 (436)
T ss_pred CC
T ss_conf 86
No 24
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.15 E-value=0.00016 Score=52.21 Aligned_cols=224 Identities=18% Similarity=0.254 Sum_probs=136.8
Q ss_pred EECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-C
Q ss_conf 967986789999999999998397000024741112266999999852312212588834688711378898606874-3
Q gi|254780506|r 39 LVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE-K 117 (306)
Q Consensus 39 lvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~-K 117 (306)
++|+.=+-..-=..-..+++++|++.....+ ++++++|.+.++.+.. ..+.|.-|-+|+...+ -..++.+++. |
T Consensus 10 liG~pi~hS~SP~ihn~~f~~~gl~~~Y~~~--~v~~~~l~~~i~~l~~-~~~~G~nVT~P~K~~v--~~~ld~l~~~A~ 84 (275)
T PRK00258 10 VIGNPIAHSKSPFIHNAAAKQLGLDGEYLAF--LVPLDDLEDAVRGFFA-LGGKGANVTVPFKEAA--FALADELSERAR 84 (275)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHHHHHHH-CCCCEEEECHHHHHHH--HHCCCHHHHHHH
T ss_conf 9888824130799999999986999389988--7888899999997776-6987799668989999--862460217788
Q ss_pred CHHHCCHH-H-HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCC
Q ss_conf 51321553-3-888730477887567667999999998678772001289961644203468999986204-53312467
Q gi|254780506|r 118 DVDGLHVV-N-AGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSK 194 (306)
Q Consensus 118 DVDGl~~~-N-~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~ 194 (306)
.+-..|.. + -|+ ..|. -.--.|+++.|+++ +.+.++|+++|+|.+. .+|-++.-|.+.++ .++++++.
T Consensus 85 ~igavNTi~~~~g~-l~G~------NTD~~G~~~~l~~~-~~~~~~k~vlIlGaGG-aarai~~al~~~g~~~i~i~nR~ 155 (275)
T PRK00258 85 LAGAVNTLVLEDGR-LIGD------NTDGIGFVRDLERL-GLDLKGKRILLLGAGG-AARAVILPLLELGVAEITIVNRT 155 (275)
T ss_pred HHCCEEEEEEECCE-EEEE------ECCHHHHHHHHHHH-CCCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECC
T ss_conf 74554589955998-9998------36778999999984-8785687599988871-07999999997699989999589
Q ss_pred C-------------------CCHHHHHHHCCEEEEECCC---CC--CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECC
Q ss_conf 6-------------------5347764223573652244---32--1220104766269983111112676688568417
Q gi|254780506|r 195 T-------------------KNLPEICRTADILVVAVGR---PR--MVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGD 250 (306)
Q Consensus 195 T-------------------~~l~~~~~~ADivIsAvG~---p~--~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GD 250 (306)
. .++.....++|+||.|+.. +. .+..++++++.+|+|+-+++.+.
T Consensus 156 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiInaTp~Gm~~~~~~~~~~~~~~~~~v~D~~Y~P~~T----------- 224 (275)
T PRK00258 156 VERAEELAELFGEGVQALGLDELAGELADFDLIINTTSAGMSGELPPLPASLLRPGTVVYDMIYGPLPT----------- 224 (275)
T ss_pred HHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCC-----------
T ss_conf 999999999835676275378754304457779965777777886511387648886699866579999-----------
Q ss_pred CCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 75678731440089869868689999999999999998688985
Q gi|254780506|r 251 VADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 251 vd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
.+--..+....+-+.| .-||+.+-+.+.+.-.|.+.|
T Consensus 225 -~ll~~a~~~G~~~i~G------l~Mli~Qa~~qf~iwtg~~~~ 261 (275)
T PRK00258 225 -PFLAWAKAQGARTVDG------LGMLVHQAAEAFELWTGVRPD 261 (275)
T ss_pred -HHHHHHHHCCCEEECC------HHHHHHHHHHHHHHHHCCCCC
T ss_conf -9999999882948577------999999999999998499999
No 25
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.15 E-value=1.4e-05 Score=59.76 Aligned_cols=132 Identities=24% Similarity=0.304 Sum_probs=86.0
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC--------------------------CCHHHHH
Q ss_conf 99998678772001289961644203468999986204533124676--------------------------5347764
Q gi|254780506|r 149 LLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT--------------------------KNLPEIC 202 (306)
Q Consensus 149 ~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T--------------------------~~l~~~~ 202 (306)
+-++++ |.+++||+++|+|-+.-||+-.|.+|.++||.|+++.+.- .+..+.+
T Consensus 17 kal~~~-g~dl~g~~~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l 95 (194)
T cd01078 17 KALELM-GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAI 95 (194)
T ss_pred HHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999982-9986798899985885789999999998399799995878889999999999709873113578877899774
Q ss_pred HHCCEEEEECCCCC---CCCCCC-CCCCCEEEEEEEEECCCCCCCCCEEEC-CCCHHHHHHCCEECCCCCCCCHHHHHHH
Q ss_conf 22357365224432---122010-476626998311111267668856841-7756787314400898698686899999
Q gi|254780506|r 203 RTADILVVAVGRPR---MVQVDW-IKTGSLVIDVGINRINSPQLGKTVLVG-DVADECKSVVGAITPVPGGVGPMTIAML 277 (306)
Q Consensus 203 ~~ADivIsAvG~p~---~i~~~~-vk~gavvIDvGi~~~~~~~~~~~~~~G-Dvd~~~~~~a~~iTPVPGGVGp~Tva~L 277 (306)
+.||||+++. .++ +....| .|++.|+.||- .+..- | +-| |+-+++..+. -+-++|++.+=-+
T Consensus 96 ~~adiV~~a~-aAGv~~~~~~~~~~k~l~Vv~DVN--AvPP~--G---i~Gv~~~D~~~~i~-----G~~~~Gal~iG~~ 162 (194)
T cd01078 96 KGADVVFAAG-AAGVELLEKLAWAPKPLAVAADVN--AVPPV--G---IEGIDVPDKGVDRE-----GKVPYGAIGVGGL 162 (194)
T ss_pred CCCCEEEECC-HHHHHHHHHHHHCCCCCEEEEECC--CCCCC--C---CCCCCCCCCCEECC-----CCEEECCCCCCHH
T ss_conf 6698999642-777888788885088865998658--99985--5---01103366734507-----9725643112421
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 99999999998688985
Q gi|254780506|r 278 MANTVIAAYRSLGMKSP 294 (306)
Q Consensus 278 ~~N~v~aa~~~~~~~~~ 294 (306)
=..+-+++-+++--.+|
T Consensus 163 K~k~~~~~~~~m~~s~~ 179 (194)
T cd01078 163 KMKTHRACIAKLFESNP 179 (194)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 69999999999963798
No 26
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=98.03 E-value=0.00069 Score=47.90 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-CCHHHCCHH--
Q ss_conf 99999999998397000024741112266999999852312212588834688711378898606874-351321553--
Q gi|254780506|r 49 YVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE-KDVDGLHVV-- 125 (306)
Q Consensus 49 Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~-KDVDGl~~~-- 125 (306)
-=.+-..+++++|++..-..+ ++..+++.+.+..+. +....|.-|=+|....+ -..++.+++. |-+-..|..
T Consensus 24 SP~ihn~~~~~~gi~~~Y~~~--~v~~~~l~~~~~~~~-~~~~~G~nVTiP~K~~v--~~~~d~l~~~A~~iGAvNTi~~ 98 (289)
T PRK12548 24 SPAMYNYSFQKAGLDYAYLAF--DVPKEKVADAITAIR-TFNMRGANVTMPCKSEV--AKLMDELSPAARIIGAVNTIVN 98 (289)
T ss_pred CHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHHHHHH-HCCCCEEEECHHHHHHH--HHHHCCCCHHHHHHCCEEEEEC
T ss_conf 499999999986999299978--778889999999887-47998899726139999--9975649988998405247773
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCC------CC--
Q ss_conf 38887304778875676679999999986787720012899616442034689999862045-3312467------65--
Q gi|254780506|r 126 NAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSK------TK-- 196 (306)
Q Consensus 126 N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~------T~-- 196 (306)
.-|++ .|.-. --.|++.-|+.+ ++++++|+++|+|.+. .++.++..|...++. ++++++. +.
T Consensus 99 ~~g~l-~G~NT------D~~Gf~~~L~~~-~~~~~~k~vlIlGaGG-aa~ai~~~l~~~g~~~i~i~nr~~~~~~ra~~~ 169 (289)
T PRK12548 99 DDGKL-TGHIT------DGLGFVRNLREH-GVDVKGKKLTIIGAGG-AATAIQVQCALDGAKEITIFNIKDDFYERAEQT 169 (289)
T ss_pred CCCEE-EEECC------CHHHHHHHHHHH-CCCCCCCEEEEEECCH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf 39989-98758------779999999980-9996777479995216-799999999976998899996881488999999
Q ss_pred ----------------------CHHHHHHHCCEEEEEC--CC-C-----CCCCCCCCCCCCEEEEEEEEECCCCCCCCCE
Q ss_conf ----------------------3477642235736522--44-3-----2122010476626998311111267668856
Q gi|254780506|r 197 ----------------------NLPEICRTADILVVAV--GR-P-----RMVQVDWIKTGSLVIDVGINRINSPQLGKTV 246 (306)
Q Consensus 197 ----------------------~l~~~~~~ADivIsAv--G~-p-----~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~ 246 (306)
++.+.+.++|++|.|+ |- | .+...+.++++.+|+|+-.++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliINaT~~Gm~p~~~~~~~~~~~~~~~~~~v~D~vY~P~~T------- 242 (289)
T PRK12548 170 VAKIKEEVPACIVHVYDLNDTEKLNAEIATSDILVNATLVGMHPNEDETPIKDTSVFRKDLVVADTVYNPKKT------- 242 (289)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC-------
T ss_conf 9999845877647985143166665543226744533565668775568887866738897899831388478-------
Q ss_pred EECCCCH-HHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8417756-7873144008986986868999999999999999868898555
Q gi|254780506|r 247 LVGDVAD-ECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKF 296 (306)
Q Consensus 247 ~~GDvd~-~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~~~ 296 (306)
-+ ..... ....-+.| .-||..+-+.+.+.-.|.+.|.-
T Consensus 243 -----~ll~~A~~-~G~~~i~G------l~MLv~Qa~~~FelwtG~~~p~~ 281 (289)
T PRK12548 243 -----KLLEDAEA-AGCKTVGG------LGMLLWQGAEAYKLFTGKDMPVS 281 (289)
T ss_pred -----HHHHHHHH-CCCEEECH------HHHHHHHHHHHHHHHHCCCCCHH
T ss_conf -----99999998-82968572------99999999999999839999999
No 27
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.98 E-value=0.00058 Score=48.42 Aligned_cols=214 Identities=16% Similarity=0.218 Sum_probs=129.3
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHH
Q ss_conf 99999999839700002474111226699999985231221258883468871137889860687435132155338887
Q gi|254780506|r 51 SAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKV 130 (306)
Q Consensus 51 ~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l 130 (306)
..-..+.+++|+++.-..+ ++..+++.+.++.+.+ ..+.|.=|-+|+...+ -..++.+++.= .-....|. +
T Consensus 24 ~ihn~~f~~~gl~~~Y~~~--~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~~--~~~~D~l~~~A--~~igAvNT--i 94 (288)
T PRK12749 24 EMQNKALEKAGLPFTYMAF--EVDNDSFPGAIEGLKA-LKMRGTGVSMPNKQLA--CEYVDELTPAA--KLVGAINT--I 94 (288)
T ss_pred HHHHHHHHHCCCCEEEEEE--ECCHHHHHHHHHHHHH-CCCCEEEEHHHHHHHH--HHHHCCCCHHH--HHHHCEEE--E
T ss_conf 9999999986998199988--7788889999999875-7998999706229999--98844314889--97403448--9
Q ss_pred HHCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCCCC-----------
Q ss_conf 304778-87567667999999998678772001289961644203468999986204-53312467653-----------
Q gi|254780506|r 131 MIGDFT-TGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKTKN----------- 197 (306)
Q Consensus 131 ~~~~~~-~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T~~----------- 197 (306)
+..+.+ .++ -.-..|.+.-|++. +++++||+++|+|.+. .++-++..|...++ .++++++..+.
T Consensus 95 ~~~~g~l~G~-NTD~~G~~~~l~~~-~~~~~~k~~lIlGaGG-aa~Ai~~~l~~~g~~~i~i~nR~~~~~~~~~~~a~~~ 171 (288)
T PRK12749 95 VNDDGYLRGY-NTDGTGHIRAIKES-GFDIKGKTMVLLGAGG-ASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 171 (288)
T ss_pred EEECCEEEEE-ECCCHHHHHHHHHC-CCCCCCCEEEEEECCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 9229989999-47708999999980-9985677689982345-8899999999769987999968855789999999986
Q ss_pred ------------------HHHHHHHCCEEEEECC--CCC------CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCC
Q ss_conf ------------------4776422357365224--432------12201047662699831111126766885684177
Q gi|254780506|r 198 ------------------LPEICRTADILVVAVG--RPR------MVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDV 251 (306)
Q Consensus 198 ------------------l~~~~~~ADivIsAvG--~p~------~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDv 251 (306)
+.+.+..+|++|-|+- -.. ....+.++++.++.|+-.++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~dliiN~Tp~Gm~~~~~~~~~~~~~~~~~~~~v~D~vY~P~~T------------ 239 (288)
T PRK12749 172 NENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMT------------ 239 (288)
T ss_pred HHCCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCHHH------------
T ss_conf 32257557743410145677651346555236457778776445566464569888999972395662------------
Q ss_pred CHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5678731440089869868689999999999999998688985
Q gi|254780506|r 252 ADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 252 d~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
.+--.-++...+-+.| .-||..+-+.+.+.-.|.+.|
T Consensus 240 ~ll~~a~~~G~~~i~G------l~MLv~Qa~~~f~lwTG~~~p 276 (288)
T PRK12749 240 KLLQQAQQAGCKTIDG------YGMLLWQGAEQFTLWTGKDFP 276 (288)
T ss_pred HHHHHHHHCCCCEECH------HHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999883916167------999999999999998199999
No 28
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.97 E-value=2.3e-05 Score=58.16 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=68.5
Q ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-------------CCCHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 867877200128996164420346899998620453312467-------------6534776422357365224432122
Q gi|254780506|r 153 QFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-------------TKNLPEICRTADILVVAVGRPRMVQ 219 (306)
Q Consensus 153 ~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-------------T~~l~~~~~~ADivIsAvG~p~~i~ 219 (306)
+-.++-+.||++||.|.+. |||-.|+-|...||.|.+..-. .-.+.+-.+.+||+|+|+|.-+.|+
T Consensus 201 RaTn~liaGK~vVV~GYG~-vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~ 279 (420)
T COG0499 201 RATNVLLAGKNVVVAGYGW-VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIR 279 (420)
T ss_pred HHHCEEECCCEEEEECCCC-CCHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEHHHHHHCCCEEEECCCCCCCCC
T ss_conf 6420011486699963564-436699986228986999824817889986357188786674421898998668857578
Q ss_pred CCCC---CCCCEEEEEE
Q ss_conf 0104---7662699831
Q gi|254780506|r 220 VDWI---KTGSLVIDVG 233 (306)
Q Consensus 220 ~~~v---k~gavvIDvG 233 (306)
.+++ |+|+++-+.|
T Consensus 280 ~eh~~~MkDgaIl~N~G 296 (420)
T COG0499 280 KEHFEKMKDGAILANAG 296 (420)
T ss_pred HHHHHHCCCCEEEECCC
T ss_conf 99997264884996265
No 29
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.85 E-value=0.0013 Score=46.04 Aligned_cols=216 Identities=17% Similarity=0.177 Sum_probs=140.8
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-------H-HHHH
Q ss_conf 9967986789999999999998397000024741112266999999852312212588834688711-------3-7889
Q gi|254780506|r 38 VLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV-------S-EQSI 109 (306)
Q Consensus 38 IlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i-------d-~~~i 109 (306)
+.++.+|.|-.= ++--.+.+++|+++.-.-+. .+++.+.++.+. ...+.|.=|-+|....+ | +-+.
T Consensus 13 ~~~~~~p~~~~~-~mHN~af~~lgl~~~Y~~~~----~~~l~~~i~~lr-~~~~~G~nVTiP~K~~i~~~lD~ld~~A~~ 86 (272)
T PRK12550 13 ISLAARPSNFGT-RFHNYLYEALGLNFLYKAFT----TTDLTAAIGGVR-ALGIRGCAVSMPFKEACIPLVDELDPSAKA 86 (272)
T ss_pred EEECCCCCCCCH-HHHHHHHHHCCCCEEEEEEC----HHHHHHHHHHHH-HCCCCEEEECCCCHHHHHHHHCCCCHHHHH
T ss_conf 994469886778-99999999879992998637----877999999887-579988998643699999985436888997
Q ss_pred HHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CE
Q ss_conf 86068743513215533888730477887567667999999998678772001289961644203468999986204-53
Q gi|254780506|r 110 IQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TV 188 (306)
Q Consensus 110 ~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tV 188 (306)
+.+++.-.--|| + ..|.-.+ -.|+...++.+ +++ .+++++|+|.+. .+|..+.-|.+.|+ .+
T Consensus 87 iGAVNTiv~~~g-------~-l~G~NTD------~~G~~~~l~~~-~~~-~~~~~lilGaGG-aarai~~aL~~~G~~~i 149 (272)
T PRK12550 87 IESVNTIVNTDG-------H-LKAYNTD------YIAIAQLLEEY-QVP-PDAVVALRGSGG-MAKAVAAALRDAGFTDG 149 (272)
T ss_pred HCCEEEEEEECC-------E-EEEEECC------HHHHHHHHHHC-CCC-CCCEEEEECCCH-HHHHHHHHHHHCCCCEE
T ss_conf 275547995599-------8-9999377------89999999970-888-677389973623-38999999997699879
Q ss_pred EECCCCCCC---HH----------HHHHHCCEEEEECCC-----CC----CCCCCCCCCCCEEEEEEEEECCCCCCCCCE
Q ss_conf 312467653---47----------764223573652244-----32----122010476626998311111267668856
Q gi|254780506|r 189 TMAHSKTKN---LP----------EICRTADILVVAVGR-----PR----MVQVDWIKTGSLVIDVGINRINSPQLGKTV 246 (306)
Q Consensus 189 ti~hs~T~~---l~----------~~~~~ADivIsAvG~-----p~----~i~~~~vk~gavvIDvGi~~~~~~~~~~~~ 246 (306)
+++++..+. +. ....++|+||.|+.. |. -+..++++++.+|+|+=.++.+
T Consensus 150 ~I~nR~~~~a~~L~~~~~~~~~~~~~~~~~dliINaTpvGm~~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~-------- 221 (272)
T PRK12550 150 TIVARNEKTGKALAELYGYEWRPDLGGIEADLLVNVTPIGMAGGPEADKLAFSEAEIDAASVVFDVVALPAE-------- 221 (272)
T ss_pred EEEECCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCC--------
T ss_conf 999899899999998739733464334668979966766557897534588997885888789997438987--------
Q ss_pred EECCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 841775678731440089869868689999999999999998688985
Q gi|254780506|r 247 LVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 247 ~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
-.+--..+....+-+.| .-||+.+-+.+.+.-.|.++|
T Consensus 222 ----T~ll~~A~~~G~~~i~G------l~MLi~Qa~~qF~lwTG~~p~ 259 (272)
T PRK12550 222 ----TPLIRYARARGKTVITG------AEVIALQAVEQFVLYTGVRPT 259 (272)
T ss_pred ----CHHHHHHHHCCCCEECC------HHHHHHHHHHHHHHHHCCCCC
T ss_conf ----89999999884936276------999999999999997099999
No 30
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=97.84 E-value=3e-05 Score=57.40 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=69.3
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-------------CCCHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 7877200128996164420346899998620453312467-------------653477642235736522443212201
Q gi|254780506|r 155 KGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-------------TKNLPEICRTADILVVAVGRPRMVQVD 221 (306)
Q Consensus 155 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-------------T~~l~~~~~~ADivIsAvG~p~~i~~~ 221 (306)
.++-+.||.+||.|.++ +||-+|+=+.-.||.|.+.--. --.+++-.+.+||+|+++|.-+.|..+
T Consensus 205 Tn~LiAGk~vVVaGYGw-~G~G~A~r~~G~GA~V~VtEvdPi~ALeA~MdGF~V~~m~eA~~~gdifiT~TG~~~vI~~~ 283 (422)
T TIGR00936 205 TNLLIAGKTVVVAGYGW-CGKGIAMRARGLGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIREE 283 (422)
T ss_pred HHHHHCCCEEEEECCCC-CCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEHHHHHHHCCEEEECCCCCHHCCHH
T ss_conf 55755388789970386-30789998505997799982073368873147833411788755098899815880103648
Q ss_pred CC---CCCCEEEEEEEE
Q ss_conf 04---766269983111
Q gi|254780506|r 222 WI---KTGSLVIDVGIN 235 (306)
Q Consensus 222 ~v---k~gavvIDvGi~ 235 (306)
++ |+|||+=+.|=.
T Consensus 284 h~~~MkdgAI~aN~GHF 300 (422)
T TIGR00936 284 HFEKMKDGAILANAGHF 300 (422)
T ss_pred HHHHCCCCCEEECCCCC
T ss_conf 88506677288535765
No 31
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.82 E-value=0.001 Score=46.69 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=98.1
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC---------CCCHHHHHHHCCEEEEECC--------
Q ss_conf 99867877200128996164420346899998620453312467---------6534776422357365224--------
Q gi|254780506|r 151 IEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK---------TKNLPEICRTADILVVAVG-------- 213 (306)
Q Consensus 151 l~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~---------T~~l~~~~~~ADivIsAvG-------- 213 (306)
+.+..|.++.||++.|||.++ ||+-+|.+|..-|..|..|... -.++++..++||||.-.+.
T Consensus 106 la~~~g~~l~gktvGIIG~G~-IG~~va~~l~afG~~vl~~DP~~~~~~~~~~~~sleell~~sDiIslHvPLt~~g~~~ 184 (379)
T PRK00257 106 LAEREGVDLAERTYGIVGVGH-VGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDIISLHTPLTKEGEHP 184 (379)
T ss_pred HHHHHCHHHCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCHHHHHHCCCCEECHHHHHHHCCEEEEECCCCCCCCCC
T ss_conf 998508665198799977167-9999999999779989997845766433860334999987499999925777788753
Q ss_pred CCCCCCCCC---CCCCCEEEEEEEEECCCC-------CCCC-CEEECCC-------CHHHHHHCCEECCCCCCCCHH---
Q ss_conf 432122010---476626998311111267-------6688-5684177-------567873144008986986868---
Q gi|254780506|r 214 RPRMVQVDW---IKTGSLVIDVGINRINSP-------QLGK-TVLVGDV-------ADECKSVVGAITPVPGGVGPM--- 272 (306)
Q Consensus 214 ~p~~i~~~~---vk~gavvIDvGi~~~~~~-------~~~~-~~~~GDv-------d~~~~~~a~~iTPVPGGVGp~--- 272 (306)
--++|..+. +|+|+++|+++=-.+-|. +.++ ...+=|| +.+..+.+..-||=-.|=--=
T Consensus 185 T~~Li~~~~L~~mk~~aiLINtsRG~VVDe~ALl~aL~~g~~~~a~LDVwe~EP~i~~~Ll~~~~iaTPHIAGyS~egK~ 264 (379)
T PRK00257 185 TWHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGKA 264 (379)
T ss_pred CCCCCCHHHHHHCCCCCEEEECCCCHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCEECCCCCCCCHHHHH
T ss_conf 20471999996079980999889730019999999998199636886435679998988984587867813456788998
Q ss_pred -HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -99999999999999986889855564344
Q gi|254780506|r 273 -TIAMLMANTVIAAYRSLGMKSPKFDAQSI 301 (306)
Q Consensus 273 -Tva~L~~N~v~aa~~~~~~~~~~~~~~~~ 301 (306)
-+.|+++.+ -+.+|+...+--.+.+
T Consensus 265 rgT~m~~~a~----c~~~~~~~~~~~~~~l 290 (379)
T PRK00257 265 RGTAQIYQAL----CRFFGIEARVSLTDLL 290 (379)
T ss_pred HHHHHHHHHH----HHHHCCCCCCCCCCCC
T ss_conf 7999999999----9984898543212369
No 32
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.82 E-value=5e-05 Score=55.79 Aligned_cols=121 Identities=25% Similarity=0.354 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC---------------------CCCCHHHHHHHCCEEEEEC---C--
Q ss_conf 0012899616442034689999862045331246---------------------7653477642235736522---4--
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS---------------------KTKNLPEICRTADILVVAV---G-- 213 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs---------------------~T~~l~~~~~~ADivIsAv---G-- 213 (306)
..-+++|+|-+ +||.--|.|...-||+||+... .-.|+++.+++||++|.|| |
T Consensus 167 ~~~kv~iiGGG-vvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 167 LPAKVVVLGGG-VVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCCCEEEECCC-CCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCEEEEEEEECCCC
T ss_conf 77608998776-12406999972368706999527788764067657666999758999998743126798888845887
Q ss_pred CCCCCCCCCC---CCCCEEEEEEEEECCCCCCCCCEEECCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 4321220104---7662699831111126766885684177567873144008986986868999999999
Q gi|254780506|r 214 RPRMVQVDWI---KTGSLVIDVGINRINSPQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANT 281 (306)
Q Consensus 214 ~p~~i~~~~v---k~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~ 281 (306)
-|.+++.+|+ |+|+++|||.|..-.--+..+..-.-|=-++...+..+--|.-=|.=|-|.++=+.|.
T Consensus 246 aPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVprTst~AL~na 316 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGAVPRTSTQALTNA 316 (371)
T ss_pred CCEEHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCCCCCCCEEECCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf 86010699997447985899998748881530454357897016357799961799865641457776405
No 33
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=97.69 E-value=7.2e-05 Score=54.70 Aligned_cols=77 Identities=29% Similarity=0.451 Sum_probs=62.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC----------------------CCCCHHHHHHHCCEEEEEC---C
Q ss_conf 20012899616442034689999862045331246----------------------7653477642235736522---4
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS----------------------KTKNLPEICRTADILVVAV---G 213 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs----------------------~T~~l~~~~~~ADivIsAv---G 213 (306)
..-.+++|+|.+. +|.-.+.+....||.|++.+. .+.++.+.+++||+||.|+ |
T Consensus 18 v~pa~vvViG~Gv-~G~~A~~~A~~lGa~V~v~D~~~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~aDvvIgavl~pg 96 (150)
T pfam01262 18 VPPAKVVVIGGGV-VGLGAAATAKGLGAPVTILDVRPERLEQLDSLFAEFVETDIFSNCEYLAEAIAEADLVIGTVLIPG 96 (150)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCEEEEEEECCC
T ss_conf 7677799989878-999999999867998999729999999999864762001665379999999743879997203178
Q ss_pred C--CCCCCCCCC---CCCCEEEEEEEEE
Q ss_conf 4--321220104---7662699831111
Q gi|254780506|r 214 R--PRMVQVDWI---KTGSLVIDVGINR 236 (306)
Q Consensus 214 ~--p~~i~~~~v---k~gavvIDvGi~~ 236 (306)
+ |.+|+.+|+ |||+++||+.+..
T Consensus 97 ~~aP~lIt~~mv~~MkpGsVIVDvaiDq 124 (150)
T pfam01262 97 ARAPKLVTREMVKTMKPGSVIVDVAIDQ 124 (150)
T ss_pred CCCCCEECHHHHHHHCCCCEEEEEECCC
T ss_conf 8699220799998447993999962048
No 34
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.67 E-value=0.006 Score=41.37 Aligned_cols=215 Identities=17% Similarity=0.169 Sum_probs=133.2
Q ss_pred HHHHHHHHHCCCCEEECCC--C-CCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-CCHHHCCHH-
Q ss_conf 9999999983970000247--4-1112266999999852312212588834688711378898606874-351321553-
Q gi|254780506|r 51 SAKTRMAKHCGFHSVQYNF--P-VDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE-KDVDGLHVV- 125 (306)
Q Consensus 51 ~~K~K~a~~lGI~~~~~~l--~-~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~-KDVDGl~~~- 125 (306)
..-..+++++|++..-..+ . .+.+.+++.+.+..+. +..+.|+=|-+|....+ -..++.+++. +-+-..|..
T Consensus 22 ~iHn~~~~~lgl~~~Y~~~d~~~~~~~~~~l~~~~~~~~-~~~~~G~nVTiP~K~~~--~~~~d~l~~~A~~igAvNTi~ 98 (284)
T PRK12549 22 AMHEAEGDAQGLRYVYRLIDLDALGLSADALPELLDAAE-RMGFNGLNITHPCKQAV--IPLLDELSDDARALGAVNTVV 98 (284)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCHHHH--HHHHHHHHHHHHHHCCEEEEE
T ss_conf 999999998799809997532121399789999999987-68998899811749999--999705237899856521489
Q ss_pred -HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCC--------
Q ss_conf -3888730477887567667999999998678772001289961644203468999986204-533124676--------
Q gi|254780506|r 126 -NAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKT-------- 195 (306)
Q Consensus 126 -N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T-------- 195 (306)
.-|++ .|.-.+ ..|+++-|++. ..+..+++++|+|.+. .++-.+.-|.+.|+ .++++++.-
T Consensus 99 ~~~g~l-~G~NTD------~~G~~~~l~~~-~~~~~~~~vlilGaGG-aa~ai~~al~~~g~~~i~I~nR~~~r~~~l~~ 169 (284)
T PRK12549 99 FRDGRR-IGHNTD------WSGFAEGFRRG-LPDASLERVVQLGAGG-AGAAVAHALLTLGVERLTLFDVDPARAQALAD 169 (284)
T ss_pred EECCEE-EEEECC------HHHHHHHHHHH-CCCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 759989-998066------68899999974-6453557189965661-68999999997699989999798899999999
Q ss_pred --------------CCHHHHHHHCCEEEEECC-----CCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHHH
Q ss_conf --------------534776422357365224-----4321-22010476626998311111267668856841775678
Q gi|254780506|r 196 --------------KNLPEICRTADILVVAVG-----RPRM-VQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADEC 255 (306)
Q Consensus 196 --------------~~l~~~~~~ADivIsAvG-----~p~~-i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~ 255 (306)
.++.+....+|++|.|+. .+++ +..++++++.+|+|+-.++.+. .+--
T Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~~d~iINaTp~Gm~~~~~~p~~~~~l~~~~~v~D~vY~P~~T------------~ll~ 237 (284)
T PRK12549 170 ELNARFPAARVTAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET------------ELLR 237 (284)
T ss_pred HHHHHCCCCEEEECHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCC------------HHHH
T ss_conf 9986579863764167676542138266578988778999999988918787567612077457------------9999
Q ss_pred HHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7314400898698686899999999999999986889855
Q gi|254780506|r 256 KSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPK 295 (306)
Q Consensus 256 ~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~~ 295 (306)
..+....+-+.| .-||+.+-+.+.+.-.|..+|.
T Consensus 238 ~A~~~G~~~i~G------l~MLv~Qa~~qfelwtG~~~~~ 271 (284)
T PRK12549 238 AARALGCRTLDG------GGMAVFQAVDAFELFTGREPDA 271 (284)
T ss_pred HHHHCCCEEECC------HHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999885907783------9999999999999970999999
No 35
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.64 E-value=0.0014 Score=45.65 Aligned_cols=205 Identities=16% Similarity=0.246 Sum_probs=126.0
Q ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC-CHHHCCHH--HHH
Q ss_conf 999999983970000247411122669999998523122125888346887113788986068743-51321553--388
Q gi|254780506|r 52 AKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEK-DVDGLHVV--NAG 128 (306)
Q Consensus 52 ~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~K-DVDGl~~~--N~g 128 (306)
.--.+.+++|++..-..++- +.+++.+.++.+. +++..|.=|-+|+...+ -..++.++|.- -+-..|.. .-|
T Consensus 233 lHN~~f~~~gl~~~Y~~~~v--~~~~l~~f~~~~~-~~~f~G~sVTiP~K~~i--~~~lDeld~~A~~iGAVNTiv~~~g 307 (477)
T PRK09310 233 SHNPLFSQLSLNCPYIKLPL--TPQELPEFFSLIR-DLPFLGLSVTMPLKTAV--LDFLDKLDPSVKLCGSCNTLVFRNG 307 (477)
T ss_pred HHHHHHHHCCCCCEEEEEEC--CHHHHHHHHHHHH-HCCCCEEEECCCCHHHH--HHHHCCCCHHHHHHCCEEEEEEECC
T ss_conf 99999997799967788856--8889999999875-37998899880779999--9871528988997376658998899
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC------------
Q ss_conf 87304778875676679999999986787720012899616442034689999862045331246765------------
Q gi|254780506|r 129 KVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK------------ 196 (306)
Q Consensus 129 ~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~------------ 196 (306)
++ .|.-.+ -.|++..|++. +++++|++++|+|.+. .+|.++.-|...|+.|+++++...
T Consensus 308 kl-~G~NTD------~~G~~~~L~~~-~~~~~~~~~~vlGaGG-aarAi~~~l~~~g~~i~I~nRt~~ka~~La~~~~~~ 378 (477)
T PRK09310 308 KI-LGYNTD------GEGLFSLLKQK-NISLNNQHVAIVGAGG-AAKAIATTLARQGAELLIFNRTKAHAEALASRCQGK 378 (477)
T ss_pred EE-EEEECC------HHHHHHHHHHH-CCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC
T ss_conf 89-998257------89999999970-9994446224424750-799999999867997999979989999999874886
Q ss_pred --CHHH--HHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCH-HHHHHCCEECCCCCCCCH
Q ss_conf --3477--64223573652244321220104766269983111112676688568417756-787314400898698686
Q gi|254780506|r 197 --NLPE--ICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVAD-ECKSVVGAITPVPGGVGP 271 (306)
Q Consensus 197 --~l~~--~~~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~-~~~~~a~~iTPVPGGVGp 271 (306)
++.+ ..+++|++|.|+. |+.-.++.+. .+|+|+-+++.+- -+ ...+. ...+-++|
T Consensus 379 ~~~~~~l~~~~~~dliIn~tp-~~~~~~~~~~--~~v~D~vY~P~~T------------~lL~~A~~-~G~~~v~G---- 438 (477)
T PRK09310 379 AFPLGSLPELHTIDIIINCLP-PSVTIPEAFP--PVVVDINTLPKHS------------PYTQYARK-HGSSIIYG---- 438 (477)
T ss_pred EEEHHHHHHCCCCCEEEECCC-CCCCCCCCCC--CEEEEEECCCCCC------------HHHHHHHH-CCCEEECC----
T ss_conf 753566531677898998989-9877753128--8899996388479------------99999998-75988785----
Q ss_pred HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999999999999986889
Q gi|254780506|r 272 MTIAMLMANTVIAAYRSLGMK 292 (306)
Q Consensus 272 ~Tva~L~~N~v~aa~~~~~~~ 292 (306)
.-||..+-+.+.+.=.|..
T Consensus 439 --leMLv~Qa~~qFelW~g~~ 457 (477)
T PRK09310 439 --YEMFAEQALLQFRLWFPTF 457 (477)
T ss_pred --HHHHHHHHHHHHHHHCCCC
T ss_conf --9999999999998537999
No 36
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=97.60 E-value=0.00024 Score=51.10 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=66.4
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC-----------CCHHHHHHHCCEEEEECCC----CCCCC
Q ss_conf 78772001289961644203468999986204533124676-----------5347764223573652244----32122
Q gi|254780506|r 155 KGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT-----------KNLPEICRTADILVVAVGR----PRMVQ 219 (306)
Q Consensus 155 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T-----------~~l~~~~~~ADivIsAvG~----p~~i~ 219 (306)
.+.++.||++.|+|-++ +|+-+|.++..-|+.|....+.. .++++..++||||+.++.- .++|.
T Consensus 30 ~g~~L~gk~vgIiG~G~-IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~ll~~sDii~~~~plt~~T~~li~ 108 (176)
T pfam02826 30 LGRELSGKTVGIIGLGR-IGRAVARRLKAFGMKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLIN 108 (176)
T ss_pred CCCCCCCCEEEEECCCH-HHHHHHHHHHHHCCCEEEECCCCCCHHHHCCEEECCHHHHHHHCCEEEECCCCCCCCCCCCC
T ss_conf 85557999999989699-99999999998398125437987610231571666899998629988754767420246346
Q ss_pred CCC---CCCCCEEEEEEE
Q ss_conf 010---476626998311
Q gi|254780506|r 220 VDW---IKTGSLVIDVGI 234 (306)
Q Consensus 220 ~~~---vk~gavvIDvGi 234 (306)
.+. .|+++++|++|=
T Consensus 109 ~~~l~~mk~~a~lIN~sR 126 (176)
T pfam02826 109 AERLALMKPGAILINTAR 126 (176)
T ss_pred HHHHHHHCCCCEEEEECC
T ss_conf 999985189988998067
No 37
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=97.58 E-value=0.0096 Score=39.93 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=97.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCC-C-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 999679867899999999999983970000247411-1-22669999998523122125888346887113788986068
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVD-I-SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIV 114 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~-~-se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~ 114 (306)
+.++=..|..++-+.. +-++.++|.....+.-... . .-+-+.++.+-|+.= +|+|++-.+-..-+ ..+-+..+
T Consensus 48 i~~lF~epSTRTR~SF-E~A~~~LGg~~i~l~~~~s~~~kgEsl~DTarvLs~~--~D~Iv~R~~~~~~~--~~~a~~s~ 122 (334)
T PRK03515 48 IALIFEKDSTRTRCSF-EVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM--YDGIQYRGYGQEIV--ETLAEYAG 122 (334)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC--CCEEEEECCCHHHH--HHHHHHCC
T ss_conf 9999648870379999-9999982992999677534366898789999999961--88799967554899--99998769
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCEEECC
Q ss_conf 74351321553388873047788756766799-999999867877200128996164-4203468999986204533124
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRS-NLFGKPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs-~~VG~Pla~lL~~~~atVti~h 192 (306)
| .-.| | ......||-+++ ++++.+++.+-.+.|.+++++|.+ ..|...+..++..-|+.+++|.
T Consensus 123 ----v---PVIN------g-~~~~~HPtQaL~Dl~Ti~E~~~~~~l~~lkia~vGD~~nnv~~Sl~~~~~~~g~~~~~~~ 188 (334)
T PRK03515 123 ----V---PVWN------G-LTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVA 188 (334)
T ss_pred ----C---CEEE------C-CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf ----8---7664------8-988878679999999999985689756648999578765458999999985497499977
Q ss_pred CCC-------------------------CCHHHHHHHCCEEEE
Q ss_conf 676-------------------------534776422357365
Q gi|254780506|r 193 SKT-------------------------KNLPEICRTADILVV 210 (306)
Q Consensus 193 s~T-------------------------~~l~~~~~~ADivIs 210 (306)
.+. .|+++.++.||+|.+
T Consensus 189 P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDviyt 231 (334)
T PRK03515 189 PKACWPEAALVTECQALAQKNGGNITLTEDIAEGVKGADFIYT 231 (334)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCEEEE
T ss_conf 9756888789999999999719918996045655157878873
No 38
>KOG1370 consensus
Probab=97.45 E-value=0.00033 Score=50.07 Aligned_cols=98 Identities=24% Similarity=0.336 Sum_probs=78.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-------------CCCHHHHHHH
Q ss_conf 756766799999999867877200128996164420346899998620453312467-------------6534776422
Q gi|254780506|r 138 GLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-------------TKNLPEICRT 204 (306)
Q Consensus 138 ~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-------------T~~l~~~~~~ 204 (306)
.+.-|- ..++.=|++..++.+.||.+||.|.+. |||--|+-|...||.|++.... ...+.+.+++
T Consensus 192 nLygcr-eSl~DgikraTDVM~aGKv~Vv~GYGd-VGKgCaqaLkg~ga~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e 269 (434)
T KOG1370 192 NLYGCR-ESLLDGIKRATDVMIAGKVAVVCGYGD-VGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIRE 269 (434)
T ss_pred CCCCCH-HHCHHHHHHHHHHEECCCEEEEECCCC-CCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCEEEEHHHHHHC
T ss_conf 210221-100036655445145251799963576-456689997506868999605806899987525375468876412
Q ss_pred CCEEEEECCCCCCCCCCCC---CCCCEEEEEEEEEC
Q ss_conf 3573652244321220104---76626998311111
Q gi|254780506|r 205 ADILVVAVGRPRMVQVDWI---KTGSLVIDVGINRI 237 (306)
Q Consensus 205 ADivIsAvG~p~~i~~~~v---k~gavvIDvGi~~~ 237 (306)
+||+|+++|.-+.|+.+++ |++++|-++|-+-.
T Consensus 270 ~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370 270 VDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf 778997568731233999974767737852565430
No 39
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=97.44 E-value=0.00059 Score=48.36 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCCH--HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCC-
Q ss_conf 567667--99999999867877200128996164420346899998620453312467653477642235736522443-
Q gi|254780506|r 139 LVPCTP--AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRP- 215 (306)
Q Consensus 139 ~~PcTp--~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p- 215 (306)
++=|=+ ..-++.+.+. .+ =+++.|.+|+.-=-.-++..+...+..+..|. ++++.++.|||||+|+.-.
T Consensus 134 iiGaG~QA~~~l~al~~v--~~--i~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~----~~~~av~~ADIIvtaT~s~~ 205 (312)
T pfam02423 134 IIGAGAQAEFQAEALSAV--LP--IEEIRIYDRDPEAAEKFARNLQGKGFEIVACT----SAEEAVEGADIVVTVTPDKE 205 (312)
T ss_pred EECCCHHHHHHHHHHHHH--CC--CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEC----CHHHHHHCCCEEEEEECCCC
T ss_conf 964625389999999961--99--76899996898999999999983499659948----99999714998999735997
Q ss_pred -CCCCCCCCCCCCEEEEEEEEE
Q ss_conf -212201047662699831111
Q gi|254780506|r 216 -RMVQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 216 -~~i~~~~vk~gavvIDvGi~~ 236 (306)
-+++.+|+|||+.|+-+|-+.
T Consensus 206 ~P~~~~~~l~~G~hv~~vGs~~ 227 (312)
T pfam02423 206 FPILKAEWVKPGVHINAVGADC 227 (312)
T ss_pred CCCCCHHHCCCCCEEEEECCCC
T ss_conf 7500778838986899726999
No 40
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.41 E-value=0.0031 Score=43.34 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCCC-------------------CHHHHHH
Q ss_conf 7999999998678772001289961644203468999986204-5331246765-------------------3477642
Q gi|254780506|r 144 PAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKTK-------------------NLPEICR 203 (306)
Q Consensus 144 p~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T~-------------------~l~~~~~ 203 (306)
..|.+..|++. ++++++|+|+|+|.+. .+|..+.-|.+.++ .+++.++... ++.+...
T Consensus 3 ~~Gf~~~l~~~-~~~~~~k~vlIlGaGG-aarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (155)
T cd01065 3 GLGFVRALEEA-GIELKGKKVLILGAGG-AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA 80 (155)
T ss_pred HHHHHHHHHHC-CCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHHHC
T ss_conf 89999999972-9985799999986758-999999999971998228860899999999998501366401045344315
Q ss_pred HCCEEEEECCC------CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHHHHHHCCEECCCCCCCCHHHHHHH
Q ss_conf 23573652244------321220104766269983111112676688568417756787314400898698686899999
Q gi|254780506|r 204 TADILVVAVGR------PRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAML 277 (306)
Q Consensus 204 ~ADivIsAvG~------p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L 277 (306)
+.|+||.|+.. +..+..+.++++.+++|+-+++.+. .+--.-+.....-+.| .-||
T Consensus 81 ~~dliIN~tp~G~~~~~~~p~~~~~~~~~~~~~D~iY~P~~T------------~ll~~a~~~g~~~i~G------l~Ml 142 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET------------PLLKEARALGAKTIDG------LEML 142 (155)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC------------HHHHHHHHCCCEEECC------HHHH
T ss_conf 688798767787778776767887759986898653178788------------9999999983958773------9999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999986
Q gi|254780506|r 278 MANTVIAAYRSL 289 (306)
Q Consensus 278 ~~N~v~aa~~~~ 289 (306)
..+-+.+.+.-.
T Consensus 143 i~Qa~~~f~iwt 154 (155)
T cd01065 143 VYQAAEAFELWT 154 (155)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999726
No 41
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00058 Score=48.42 Aligned_cols=137 Identities=21% Similarity=0.311 Sum_probs=93.4
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC-------------CCHHHHHHHCCEEEEECCC----CC
Q ss_conf 678772001289961644203468999986204533124676-------------5347764223573652244----32
Q gi|254780506|r 154 FKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT-------------KNLPEICRTADILVVAVGR----PR 216 (306)
Q Consensus 154 y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T-------------~~l~~~~~~ADivIsAvG~----p~ 216 (306)
+.+.++.||++.|||-|+ +|+-+|.+|..-|..|..+..++ .+|.+..++||||+.-+.. -+
T Consensus 135 ~~g~el~gkTvGIiG~G~-IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~aDiv~lh~PlT~eT~g 213 (324)
T COG0111 135 FRGTELAGKTVGIIGLGR-IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred CCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCCHHHHHHHCCEEEECCCCCCHHHC
T ss_conf 665101698899989878-9999999998679869998898860001235631102699998769999983899812221
Q ss_pred CCCCCC---CCCCCEEEEEEEEECCCC-----CCCCCEEEC---CCC-HH-------HHHHCC-EECCCCCCCCHHHHHH
Q ss_conf 122010---476626998311111267-----668856841---775-67-------873144-0089869868689999
Q gi|254780506|r 217 MVQVDW---IKTGSLVIDVGINRINSP-----QLGKTVLVG---DVA-DE-------CKSVVG-AITPVPGGVGPMTIAM 276 (306)
Q Consensus 217 ~i~~~~---vk~gavvIDvGi~~~~~~-----~~~~~~~~G---Dvd-~~-------~~~~a~-~iTPVPGGVGp~Tva~ 276 (306)
++..+. .|+|+++|+++=-.+-+. ....+++.| ||- .| ....-. .+||=-||.---+...
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHiag~T~ea~~~ 293 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER 293 (324)
T ss_pred CCCHHHHHCCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHCCCCEEECCCCCCCCHHHHHH
T ss_conf 37999994489981999888752035899999997098315997079999999997435399877877446666799999
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999998688
Q gi|254780506|r 277 LMANTVIAAYRSLGM 291 (306)
Q Consensus 277 L~~N~v~aa~~~~~~ 291 (306)
+..-+.+...+-..-
T Consensus 294 ~~~~~~~~i~~~l~g 308 (324)
T COG0111 294 VAEIVAENIVRYLAG 308 (324)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999848
No 42
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=97.34 E-value=0.017 Score=38.14 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=107.9
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHH--HCCC-CCEE----EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC---
Q ss_conf 05389999999999999999998--3699-9759----999967986789999999999998397000024741112---
Q gi|254780506|r 5 IDGKVVASVLTDKIAESVAFLKK--ETGV-QVGL----AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS--- 74 (306)
Q Consensus 5 LdGk~iA~~i~~~lk~~i~~l~~--~~g~-~P~L----avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s--- 74 (306)
|+=+.+..+=.+.|-+....++. +.+. .|.| ...++ ..|..++-+. =+-++.++|........ .+++
T Consensus 10 L~i~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gK~v~~lF-~e~STRTR~S-FE~A~~~LGg~~i~l~~-~~s~~~k 86 (334)
T PRK12562 10 LKLLDFTPAELNSLLQLAAKLKADKKNGKEVARLTGKNIALIF-EKDSTRTRCS-FEVAAYDQGARVTYLGP-SGSQIGH 86 (334)
T ss_pred CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-CCCCCHHHHH-HHHHHHHCCCCEEEECC-CCCCCCC
T ss_conf 7710069999999999999998666458867678999899996-7897047999-99999985997898587-6452789
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHH
Q ss_conf 266999999852312212588834688711378898606874351321553388873047788756766799-9999998
Q gi|254780506|r 75 QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQ 153 (306)
Q Consensus 75 e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~ 153 (306)
-+-+.++++-|+.= +|+|++-.+-.+-+ .++....+ | .-.| | ......||-+++ .+++.++
T Consensus 87 gEsl~Dt~~vLs~~--~D~iv~R~~~~~~~--~~la~~s~----v---PVIN------g-~~~~~HPtQaL~Dl~Ti~E~ 148 (334)
T PRK12562 87 KESIKDTARVLGRM--YDGIQYRGHGQEVV--ETLAEYAG----V---PVWN------G-LTNEFHPTQLLADLLTMQEH 148 (334)
T ss_pred CCCHHHHHHHHHHH--CCEEEECCCCCHHH--HHHHHHCC----C---CEEE------C-CCCCCCCHHHHHHHHHHHHH
T ss_conf 98889999999860--77789735573899--99999759----9---9888------9-98776717999999999998
Q ss_pred HCCCCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCEEECCCCC-------------------------CCHHHHHHHCCE
Q ss_conf 67877200128996164-4203468999986204533124676-------------------------534776422357
Q gi|254780506|r 154 FKGCDLSGQHAVVIGRS-NLFGKPMGQLLLSRNATVTMAHSKT-------------------------KNLPEICRTADI 207 (306)
Q Consensus 154 y~~i~l~Gk~vvVvGrs-~~VG~Pla~lL~~~~atVti~hs~T-------------------------~~l~~~~~~ADi 207 (306)
+.|-.+.|++++++|.. +.|..-+..++..-|+.|++|+.++ .|+.+.++.||+
T Consensus 149 ~~g~~l~~l~i~~vGD~~n~va~S~i~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDv 228 (334)
T PRK12562 149 LPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADF 228 (334)
T ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCE
T ss_conf 46898677189996888663579999999974986999789766888899999999999709928998468887057878
Q ss_pred EEEE
Q ss_conf 3652
Q gi|254780506|r 208 LVVA 211 (306)
Q Consensus 208 vIsA 211 (306)
|.+-
T Consensus 229 vytd 232 (334)
T PRK12562 229 IYTD 232 (334)
T ss_pred EEEE
T ss_conf 9864
No 43
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.32 E-value=0.015 Score=38.69 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=96.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCC-C-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9999679867899999999999983970000247411-1-2266999999852312212588834688711378898606
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVD-I-SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSI 113 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~-~-se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I 113 (306)
...++ ..|..++=+. =+.++.++|.....+.-.+. . ..+-+.+.++-|+.- +|+|++-.+ +|-...++.+..
T Consensus 49 v~~lF-~epSTRTR~S-FE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dta~vls~~--~D~iv~R~~--~~~~~~~~a~~~ 122 (334)
T PRK01713 49 IALIF-EKTSTRTRCA-FEVAAYDQGAQVTYIDPTSSQIGHKESMKDTARVLGRM--YDAIEYRGF--KQSIVNELAKYA 122 (334)
T ss_pred EEEEE-CCCCHHHHHH-HHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH--CCEEEEECC--CHHHHHHHHHHC
T ss_conf 99984-7996268999-99999985990998475124578998999999999962--858999546--728999999865
Q ss_pred CCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCEEEC
Q ss_conf 874351321553388873047788756766799-999999867877200128996164-420346899998620453312
Q gi|254780506|r 114 VPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRS-NLFGKPMGQLLLSRNATVTMA 191 (306)
Q Consensus 114 ~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs-~~VG~Pla~lL~~~~atVti~ 191 (306)
+| --.| | ......||-+++ ++++.+++ +-++.|++++.+|.+ +.|-..+..++...|+.|++|
T Consensus 123 ----~v---PVIN------g-~~~~~HPtQ~LaDl~Ti~E~~-~~~l~gl~ia~vGD~~nnv~~S~~~~~~~lG~~v~i~ 187 (334)
T PRK01713 123 ----GV---PVFN------G-LTDEFHPTQMLADVLTMIEHC-EKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRIC 187 (334)
T ss_pred ----CC---CEEE------C-CCCCCCHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf ----99---8893------8-978777589998899999984-1654674999938975418899999999779979998
Q ss_pred CCCC-------------------------CCHHHHHHHCCEEEE
Q ss_conf 4676-------------------------534776422357365
Q gi|254780506|r 192 HSKT-------------------------KNLPEICRTADILVV 210 (306)
Q Consensus 192 hs~T-------------------------~~l~~~~~~ADivIs 210 (306)
+.++ .|+.+.++.||+|.+
T Consensus 188 ~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvyt 231 (334)
T PRK01713 188 APKALLPEDSLVEMCEKFAKESGARITVTDDIDTAVKGVDFVHT 231 (334)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEE
T ss_conf 89765878899999999999719908996078888567868987
No 44
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.30 E-value=0.00056 Score=48.51 Aligned_cols=125 Identities=18% Similarity=0.317 Sum_probs=77.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC---------------------------------C--------C
Q ss_conf 2001289961644203468999986204533124676---------------------------------5--------3
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT---------------------------------K--------N 197 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T---------------------------------~--------~ 197 (306)
+.-.+|+|+|-+ +.|.-....-.+-||.|+....+. + -
T Consensus 163 VpPAkVlViGaG-VAGlqAi~tA~~LGA~V~a~DvR~~~~EqveSlGa~fv~v~~~e~~~~~gGYAk~~s~e~~~~q~~~ 241 (510)
T PRK09424 163 VPPAKVLVIGAG-VAGLAAIGAAGSLGAIVRAFDTRPEVKEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (510)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 788528997464-7779999999627978999658788999999706742552101024457850354567899999999
Q ss_pred HHHHHHHCCEEEEEC---CC--CCCCCCCCC---CCCCEEEEEEEEECCCCCCCCCEEECCC-C--HHHHHHCCEECCCC
Q ss_conf 477642235736522---44--321220104---7662699831111126766885684177-5--67873144008986
Q gi|254780506|r 198 LPEICRTADILVVAV---GR--PRMVQVDWI---KTGSLVIDVGINRINSPQLGKTVLVGDV-A--DECKSVVGAITPVP 266 (306)
Q Consensus 198 l~~~~~~ADivIsAv---G~--p~~i~~~~v---k~gavvIDvGi~~~~~~~~~~~~~~GDv-d--~~~~~~a~~iTPVP 266 (306)
+.+.+++|||||+++ |+ |.+|+++|+ |||+|++|+.+..--+-+ ..-.|.+ . ..+ ..-.+|-.|
T Consensus 242 ~~e~~~~aDiVItTalIPG~~AP~LIt~emV~~MKpGSVIVDlAadqGGN~E---~T~pge~~~~~~GV--~iiG~~nlp 316 (510)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITKEMVDSMKPGSVIVDLAAANGGNCE---LTVPGEVVVTDNGV--KIIGYTDLP 316 (510)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHCCCCCEEEEECCCCCCCCC---CCCCCEEEEECCCE--EEECCCCHH
T ss_conf 9999742477998654189989970379999526999789995255799710---66399489941996--998888511
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 986868999999999999999868
Q gi|254780506|r 267 GGVGPMTIAMLMANTVIAAYRSLG 290 (306)
Q Consensus 267 GGVGp~Tva~L~~N~v~aa~~~~~ 290 (306)
+- =|...+.|+.|-+..--..+.
T Consensus 317 s~-~~~~aS~lya~Ni~~~l~~~~ 339 (510)
T PRK09424 317 SR-LPTQSSQLYGTNLVNLLKLLC 339 (510)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHC
T ss_conf 03-778999999999999999855
No 45
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=97.29 E-value=0.012 Score=39.14 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=96.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH----HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 99999679867899999999999983970000247411122----66999999852312212588834688711378898
Q gi|254780506|r 35 LAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQ----IDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSII 110 (306)
Q Consensus 35 LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se----~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~ 110 (306)
....++ ..|..++-+. =+.++.++|..+..+.. +.++ +.+.+.++-|+.= +|+|++-.| +|-....+-
T Consensus 48 ~v~~lF-~epSTRTR~S-Fe~A~~~LGg~~i~l~~--~~s~~~kGEs~~Dt~~~Ls~~--~D~iviR~~--~~~~~~~~a 119 (331)
T PRK02102 48 NIALIF-EKTSTRTRCA-FEVAAIDLGAHVTYLGP--NDIQLGKKESMEDTARVLGRM--YDGIEYRGF--SQEIVEELA 119 (331)
T ss_pred EEEEEE-CCCCCHHHHH-HHHHHHHCCCEEEECCC--CCCCCCCCCCHHHHHHHHHHH--CCEEEEECC--CHHHHHHHH
T ss_conf 899995-5897305999-99999985990995787--556377898989999999975--167899627--728999999
Q ss_pred HHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCE
Q ss_conf 606874351321553388873047788756766799-999999867877200128996164-420346899998620453
Q gi|254780506|r 111 QSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRS-NLFGKPMGQLLLSRNATV 188 (306)
Q Consensus 111 ~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs-~~VG~Pla~lL~~~~atV 188 (306)
+... | .-.| +. .....||-+++ .+.+.+++ | .++|++++++|.+ ..|-.-+..++..-|+.|
T Consensus 120 ~~~~----v---PVIN------~~-~~~~HPtQ~L~Dl~Ti~e~~-g-~l~gl~i~~vGD~~nnVa~S~~~~~~~lG~~v 183 (331)
T PRK02102 120 KYSG----V---PVWN------GL-TDEWHPTQMLADFMTMKEHF-G-PLKGLKLAYLGDGRNNMANSLLVGGAKLGMDV 183 (331)
T ss_pred HHCC----C---CEEC------CC-CCCCCHHHHHHHHHHHHHHH-C-CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf 7479----8---6454------88-87648799999999999983-8-75677389978876424668999998559859
Q ss_pred EECCCCC-------------------------CCHHHHHHHCCEEEEE
Q ss_conf 3124676-------------------------5347764223573652
Q gi|254780506|r 189 TMAHSKT-------------------------KNLPEICRTADILVVA 211 (306)
Q Consensus 189 ti~hs~T-------------------------~~l~~~~~~ADivIsA 211 (306)
++|+.++ .|+.+.++.||||.+-
T Consensus 184 ~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDVvytd 231 (331)
T PRK02102 184 RICAPKSLWPEEELVAQAKEIAKETGAKITITEDVEEAVKGADVIYTD 231 (331)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHCCCCEEEEE
T ss_conf 997586448897999999999998299389995666663357656530
No 46
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.17 E-value=0.0011 Score=46.60 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=66.3
Q ss_pred CCCCCCHHH--HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCC-
Q ss_conf 756766799--99999986787720012899616442034689999862045331246765347764223573652244-
Q gi|254780506|r 138 GLVPCTPAG--AILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGR- 214 (306)
Q Consensus 138 ~~~PcTp~a--v~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~- 214 (306)
+++-|=..| -++-+... .++ +++.|.||+.---.-++.++...+..|+.|. +.++.++.||||++|+..
T Consensus 132 ~iiGtG~QA~~~l~a~~~v--~~i--~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~----~~~eav~~ADIIvtaT~s~ 203 (315)
T PRK06823 132 GIVGTGIQARMQLMYLKNV--TDC--RQLWVWGRSETALEEYRQYAQALGFAVNTTL----DAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred EEECCHHHHHHHHHHHHHH--CCC--EEEEEECCCHHHHHHHHHHHHHCCCCEEEEC----CHHHHHHHCCEEEEEECCC
T ss_conf 9977189999999999871--871--0999946997999999999986199079948----9999974277479887899
Q ss_pred CCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 3212201047662699831111
Q gi|254780506|r 215 PRMVQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 215 p~~i~~~~vk~gavvIDvGi~~ 236 (306)
--+++.+|+|||+-|.-+|-+.
T Consensus 204 ~Pv~~~~~lkpG~hi~~iGs~~ 225 (315)
T PRK06823 204 EPLLQAEDIQPGTHITAVGADS 225 (315)
T ss_pred CCCCCCCCCCCCCEEEECCCCC
T ss_conf 9641655578996798427999
No 47
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.032 Score=36.30 Aligned_cols=209 Identities=21% Similarity=0.322 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-------H-HHHHHHHCCCCCCH-
Q ss_conf 99999999998397000024741112266999999852312212588834688711-------3-78898606874351-
Q gi|254780506|r 49 YVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV-------S-EQSIIQSIVPEKDV- 119 (306)
Q Consensus 49 Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i-------d-~~~i~~~I~p~KDV- 119 (306)
--.+-....+.+|+++....+ ++..++|.+.+..+- +..+.|.=|-+|+..-+ + .-+.+.+++.-+=-
T Consensus 21 SP~~Hn~~~~~lGl~~~Y~a~--~v~~~~l~~~v~~~~-~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~~iGAVNTl~~~~ 97 (283)
T COG0169 21 SPRMHNAAFRALGLDYVYLAF--EVPPEDLPEAVSGIR-ALGFRGLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRED 97 (283)
T ss_pred CHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHCCCHHHHHHCCCEEEEECC
T ss_conf 889999999981998567776--359899999999987-44887169877568889998744899899718714899766
Q ss_pred HHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCCC-
Q ss_conf 3215533888730477887567667999999998678-772001289961644203468999986204-5331246765-
Q gi|254780506|r 120 DGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKG-CDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKTK- 196 (306)
Q Consensus 120 DGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~-i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T~- 196 (306)
|| ++ .|.-.+ ..|....|+++.. .+.+|++++|+|-+. -+|..+.-|.+.|+ .+++.++...
T Consensus 98 ~g-------~l-~G~NTD------~~G~~~~L~~~~~~~~~~~~~vlilGAGG-AarAv~~aL~~~g~~~i~V~NRt~~r 162 (283)
T COG0169 98 DG-------KL-RGYNTD------GIGFLRALKEFGLPVDVTGKRVLILGAGG-AARAVAFALAEAGAKRITVVNRTRER 162 (283)
T ss_pred CC-------EE-EEECCC------HHHHHHHHHHCCCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 99-------79-997478------89999999850777566788899989768-99999999998699879999588899
Q ss_pred --CHHHH------------------HHHCCEEEEECCC--CC-----CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEC
Q ss_conf --34776------------------4223573652244--32-----122010476626998311111267668856841
Q gi|254780506|r 197 --NLPEI------------------CRTADILVVAVGR--PR-----MVQVDWIKTGSLVIDVGINRINSPQLGKTVLVG 249 (306)
Q Consensus 197 --~l~~~------------------~~~ADivIsAvG~--p~-----~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~G 249 (306)
.|.+. ..++|++|.|+.. .. ++..+.++++.+|.|+=.++.+
T Consensus 163 a~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------- 231 (283)
T COG0169 163 AEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLE----------- 231 (283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCC-----------
T ss_conf 999999864505631102455412355457899788787778878888867766867789981118878-----------
Q ss_pred CCCH-HHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7756-78731440089869868689999999999999998688985
Q gi|254780506|r 250 DVAD-ECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 250 Dvd~-~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
--+ +..+..... .+.| .-||..+-+.+.+.-.|.+++
T Consensus 232 -TplL~~A~~~G~~-~idG------l~Mlv~Qaa~aF~lwtg~~p~ 269 (283)
T COG0169 232 -TPLLREARAQGAK-TIDG------LGMLVHQAAEAFELWTGVEPP 269 (283)
T ss_pred -CHHHHHHHHCCCC-EECC------HHHHHHHHHHHHHHHHCCCCC
T ss_conf -8899999985990-7873------999999999999998489997
No 48
>PRK08291 ornithine cyclodeaminase; Validated
Probab=97.13 E-value=0.0029 Score=43.55 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=58.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEECCCCCCCHHHHHHHCCEEEEECCC-CCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 012899616442034689999862-045331246765347764223573652244-3212201047662699831111
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLLLSR-NATVTMAHSKTKNLPEICRTADILVVAVGR-PRMVQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL~~~-~atVti~hs~T~~l~~~~~~ADivIsAvG~-p~~i~~~~vk~gavvIDvGi~~ 236 (306)
=+++.|.+|+.-=-.-++.-+..+ |-.|+.|. +.++.+++||||++|+.. .-+++.+|+|||+.|+-+|-+.
T Consensus 157 i~~v~v~~r~~~~a~~f~~~~~~~~g~~v~~~~----~~~~av~~aDIIvtaT~s~~Pv~~~~~lkpG~hI~aiGs~~ 230 (330)
T PRK08291 157 IREVRVWARDAAKAEAFAAELRAALGIPVTVAR----DVHAALAGADIVVTTTPSEEPILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEC----CHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCEEEEECCCC
T ss_conf 768999838989999999999897699669929----99999722888999768999501510069982899706999
No 49
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.12 E-value=0.0018 Score=45.03 Aligned_cols=219 Identities=15% Similarity=0.205 Sum_probs=119.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC------------CHHHCCHHHHHHH
Q ss_conf 0000247411122669999998523122125888346887113788986068743------------5132155338887
Q gi|254780506|r 63 HSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEK------------DVDGLHVVNAGKV 130 (306)
Q Consensus 63 ~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~K------------DVDGl~~~N~g~l 130 (306)
+.+.+.-+...+++++.+.+. ++||+++... ..++.+ ++++.+-.| |+|..+..++
T Consensus 24 ~v~~~~~~~~~~~~~l~~~i~------~~d~li~~~~--~~i~~~-~l~~ap~LK~I~~~gvG~D~ID~~~a~~~gI--- 91 (333)
T PRK13243 24 EVEVWEDEREIPREVLLEKVK------DVDALVTMLS--ERIDAE-VFEAAPRLRIVANYAVGYDNIDVEEATKRGI--- 91 (333)
T ss_pred CEEEECCCCCCCHHHHHHHHC------CCCEEEECCC--CCCCHH-HHHCCCCCEEEEECCCCCCCCCHHHHHHCCC---
T ss_conf 599926999999999999867------9829998588--858899-9946999809988574643305999996997---
Q ss_pred HHCCCCCCCCCCCHHHHHHHHH----H------------------------HCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3047788756766799999999----8------------------------67877200128996164420346899998
Q gi|254780506|r 131 MIGDFTTGLVPCTPAGAILLIE----Q------------------------FKGCDLSGQHAVVIGRSNLFGKPMGQLLL 182 (306)
Q Consensus 131 ~~~~~~~~~~PcTp~av~~ll~----~------------------------y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~ 182 (306)
...+.......+++.-++.++. + +.|.++.||++.|||-++ +|+-+|.++.
T Consensus 92 ~V~ntpg~~~~sVAE~~~~liL~~~R~i~~~~~~~r~g~w~~~~~~~~p~~~~g~eL~gktlGIiG~G~-IG~~vak~~~ 170 (333)
T PRK13243 92 YVTNTPGVLTEATADFAFALLLATARRVVEADKFVRSGEWKRRGVAWHPMMFLGYDVYGKTIGIVGFGR-IGQAIARRAK 170 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCH-HHHHHHHHHH
T ss_conf 899689968479999999999999864999999998498664566667634456466788999979256-6899999999
Q ss_pred HHCCCEEECCCCC------------CCHHHHHHHCCEEEEECCC----CCCCCCCC---CCCCCEEEEEEEEECCCC---
Q ss_conf 6204533124676------------5347764223573652244----32122010---476626998311111267---
Q gi|254780506|r 183 SRNATVTMAHSKT------------KNLPEICRTADILVVAVGR----PRMVQVDW---IKTGSLVIDVGINRINSP--- 240 (306)
Q Consensus 183 ~~~atVti~hs~T------------~~l~~~~~~ADivIsAvG~----p~~i~~~~---vk~gavvIDvGi~~~~~~--- 240 (306)
.-|..|....... .++.+..++||+|...+.. -++|..+. .|+|+++|+++=-.+-|.
T Consensus 171 ~fgm~V~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiIslh~Plt~eT~~li~~~~~~~MK~~a~lIN~aRG~iVde~aL 250 (333)
T PRK13243 171 GFGMRILYYSRTRKPEVEKELGAEYRPLEDLLRESDFVVLAVPLTKETYHMINEERLKLMKKTAILVNIARGKVVDTKAL 250 (333)
T ss_pred HCCCEEEEECCCCCHHHHHHCCCEEECHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCHHCCHHHH
T ss_conf 76999999899898667876096881199974216526642558601346136999971799819998588400399999
Q ss_pred --CCCCCEEEC---CCC-HH------HHHHCC-EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf --668856841---775-67------873144-0089869868689999999999999998688985
Q gi|254780506|r 241 --QLGKTVLVG---DVA-DE------CKSVVG-AITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 241 --~~~~~~~~G---Dvd-~~------~~~~a~-~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
.-..+++.| ||- .| ...... .+||=-||.-.=+..-....+++.-.+-+.-+.|
T Consensus 251 ~~aL~~g~i~gA~lDVf~~EP~~~~~L~~~~nvi~TPHia~~T~ea~~~~~~~~~~ni~~~l~G~~p 317 (333)
T PRK13243 251 VKALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVP 317 (333)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999809913899847999999993576599999988444154999999999999999999869999
No 50
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.10 E-value=0.015 Score=38.51 Aligned_cols=177 Identities=12% Similarity=0.157 Sum_probs=99.5
Q ss_pred ECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC---
Q ss_conf 67986789999999999998397000024741112266999999852312212588834688711378898606874---
Q gi|254780506|r 40 VGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE--- 116 (306)
Q Consensus 40 vGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~--- 116 (306)
.+=.+.-+-|.+ +..++.|++...+ ++. ..+|+++.++ +.|||++..-- .++.+ ++++..-.
T Consensus 7 ~~~~~~e~~~~~---~~~~~~~~ev~~~--~~~-~~ee~i~~~~------~~D~i~v~~~~--~i~~~-vl~~~~~l~iK 71 (332)
T PRK08605 7 MSVRDEDAPYIK---AWAEKHHVEVDLT--KEA-LTDDNVEEVE------GFDGLSLSQQI--PLSEA-IYKLLNELGIK 71 (332)
T ss_pred EECCHHHHHHHH---HHHHHCCCEEEEE--CCC-CCHHHHHHHC------CCCEEEEECCC--CCCHH-HHHHHHHCCCE
T ss_conf 827665699999---9888659079996--699-9989999857------99889997079--77999-99966636977
Q ss_pred -----------CCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH----HH------------------HCCCCCCCCE
Q ss_conf -----------35132155338887304778875676679999999----98------------------6787720012
Q gi|254780506|r 117 -----------KDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLI----EQ------------------FKGCDLSGQH 163 (306)
Q Consensus 117 -----------KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll----~~------------------y~~i~l~Gk~ 163 (306)
=|+|..+..++ ... +.......+++.-++.++ ++ +.|.++.||+
T Consensus 72 ~I~r~gvG~DnIDl~~a~~~gI--~V~-n~P~~~~~aVAE~ai~liL~l~R~i~~~~~~~~~~~~~w~~~~~g~~l~~kt 148 (332)
T PRK08605 72 QIAQRSAGFDTYDLELANKYNI--IIS-NVPSYSPESIAEFTVTQAINLVRHFNLIQTKVREHDFRWEPPILSRSIKDLK 148 (332)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--EEE-ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEECCCCE
T ss_conf 9997772174546999997999--899-5998684899999999999998565999999982587647765754503778
Q ss_pred EEEECCCCCCHHHHHHHHH-HHCCCEEECCCCC-----------CCHHHHHHHCCEEEEECCC----CCCCCCCC---CC
Q ss_conf 8996164420346899998-6204533124676-----------5347764223573652244----32122010---47
Q gi|254780506|r 164 AVVIGRSNLFGKPMGQLLL-SRNATVTMAHSKT-----------KNLPEICRTADILVVAVGR----PRMVQVDW---IK 224 (306)
Q Consensus 164 vvVvGrs~~VG~Pla~lL~-~~~atVti~hs~T-----------~~l~~~~~~ADivIsAvG~----p~~i~~~~---vk 224 (306)
+.|||-++ +|+-+|.++. .-|+.|..+..+. .++++..++||||...+.- .++|..+. .|
T Consensus 149 vGIiG~G~-IG~~vak~~a~~fgm~vi~yd~~~~~~~~~~~~~~~~l~ell~~sDiIslh~Plt~~T~~lI~~~~l~~MK 227 (332)
T PRK08605 149 VAVIGTGR-IGLAVAKIFAKGYGCDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNTYLFNADLFKHFK 227 (332)
T ss_pred EEEEEEEH-HHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCEECCCHHHHHHHCCEEEEECCCCHHHHHHCCHHHHHHCC
T ss_conf 99997436-88999999987569826787788765566207021689999864999999336883550121899997224
Q ss_pred CCCEEEEEEEE
Q ss_conf 66269983111
Q gi|254780506|r 225 TGSLVIDVGIN 235 (306)
Q Consensus 225 ~gavvIDvGi~ 235 (306)
+|+++|+++=-
T Consensus 228 ~~a~lINtaRG 238 (332)
T PRK08605 228 KGAVFVNCARG 238 (332)
T ss_pred CCCEEEEECCC
T ss_conf 79689990686
No 51
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=97.09 E-value=0.036 Score=35.94 Aligned_cols=201 Identities=16% Similarity=0.155 Sum_probs=112.1
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHH--CCCCC-----EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC---
Q ss_conf 0053899999999999999999983--69997-----5999996798678999999999999839700002474111---
Q gi|254780506|r 4 LIDGKVVASVLTDKIAESVAFLKKE--TGVQV-----GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI--- 73 (306)
Q Consensus 4 iLdGk~iA~~i~~~lk~~i~~l~~~--~g~~P-----~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~--- 73 (306)
+|+-+.+..+=...|-+....+++. .+..+ +....++ ..|..++.+.. +-++.++|.......- +++
T Consensus 6 ~L~~~dls~~ei~~ll~~A~~lK~~~~~~~~~~~L~gk~~~~lF-~epSTRTR~SF-e~A~~~LGg~~i~l~~-~~ss~~ 82 (357)
T TIGR03316 6 FILTWEWTRDELDTVLDVAFDLKRLRALNISTKLFESGLGISLF-RDNSTRTRFSF-ASAMNLLGLHAQDLDE-GKSQIG 82 (357)
T ss_pred CCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-CCCCCCHHHHH-HHHHHHCCCEEEEECC-CCCCCC
T ss_conf 28811289999999999999998776468877557898899997-38984038999-9999985995999783-224476
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH---HHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHH
Q ss_conf 226699999985231221258883468871137889---8606874351321553388873047788756766799-999
Q gi|254780506|r 74 SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSI---IQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AIL 149 (306)
Q Consensus 74 se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i---~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ 149 (306)
.-+-+.+.++-|+. -+|+|++..+-..+.....+ ...+.. .-.||.+.-+. =+.+..+....||-+++ +++
T Consensus 83 kGEsv~DTarvls~--y~D~IviR~~~~~~~~~~~~~e~a~~~~~-~~~~~~~~s~v--PVINal~d~~HPtQaLaDl~T 157 (357)
T TIGR03316 83 HGETVRETAEMISF--FADGIGIRDDMYIGVGNAYMREVAKYVQE-GYKDGVLEQRP--PLVNLQCDIDHPTQAMADIMT 157 (357)
T ss_pred CCCCHHHHHHHHHH--HCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCC--CEEECCCCCCCCHHHHHHHHH
T ss_conf 89887999999996--38889998243334037889999987655-44310223689--878378887783699999999
Q ss_pred HHHHHCCC-CCCCCEEEEE-------CCCCCCHHHHHHHHHHHCCCEEECCCC-------------------------CC
Q ss_conf 99986787-7200128996-------164420346899998620453312467-------------------------65
Q gi|254780506|r 150 LIEQFKGC-DLSGQHAVVI-------GRSNLFGKPMGQLLLSRNATVTMAHSK-------------------------TK 196 (306)
Q Consensus 150 ll~~y~~i-~l~Gk~vvVv-------Grs~~VG~Pla~lL~~~~atVti~hs~-------------------------T~ 196 (306)
+.+++..+ .+.|++++++ ||+..|-+-+..++..-|+.|++|... |.
T Consensus 158 i~e~~G~~~~l~g~~v~i~~~~~~~~g~~~~Va~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 158 LQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN 237 (357)
T ss_pred HHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99984872246777489998612556515379999999999759809997784236787999999999998199289975
Q ss_pred CHHHHHHHCCEEEEEC
Q ss_conf 3477642235736522
Q gi|254780506|r 197 NLPEICRTADILVVAV 212 (306)
Q Consensus 197 ~l~~~~~~ADivIsAv 212 (306)
|+.+.++.||+|.+-+
T Consensus 238 d~~eav~~aDVvytd~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHHCCCCEEEECC
T ss_conf 9999956899998366
No 52
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=97.08 E-value=0.037 Score=35.87 Aligned_cols=187 Identities=17% Similarity=0.154 Sum_probs=113.9
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHH--CCC-----CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CC
Q ss_conf 0053899999999999999999983--699-----97599999679867899999999999983970000247411--12
Q gi|254780506|r 4 LIDGKVVASVLTDKIAESVAFLKKE--TGV-----QVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVD--IS 74 (306)
Q Consensus 4 iLdGk~iA~~i~~~lk~~i~~l~~~--~g~-----~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~--~s 74 (306)
+|+-+.+...-...|-+....+++. .+. ..+....++ ..|..++... =+-++.++|.....+.-.+. ..
T Consensus 7 ~L~~~Dls~~ei~~ll~~A~~~K~~~~~~~~~~~L~gk~v~~lF-~epSTRTR~S-FE~A~~~LGg~~i~l~~~~~sl~k 84 (341)
T PRK02255 7 FIDTQDYSKEEILYMIDLGLKLKEAIKNGAYPQLLKNKSLGMIF-EQPSTRTRVS-FETAMTQLGGHAQYLAPGQIHLGG 84 (341)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-CCCCCHHHHH-HHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 47222199999999999999998777558887557999899996-7897107999-999999859979982765445788
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHH
Q ss_conf 266999999852312212588834688711378898606874351321553388873047788756766799-9999998
Q gi|254780506|r 75 QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQ 153 (306)
Q Consensus 75 e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~ 153 (306)
.+-+.++++-|+.= +|+|++-.+=.+.+ .++.+.. +| --.| |. .....||-+++ ++++.++
T Consensus 85 gEsl~DT~~vls~~--~D~iviR~~~~~~~--~~la~~~----~v---PVIN------g~-~~~~HPtQaL~Dl~Ti~e~ 146 (341)
T PRK02255 85 HESIEDTARVLSRM--VDIIMARVLRHQTV--VELAKYA----TV---PVIN------GM-SDYNHPTQELGDVFTMLEH 146 (341)
T ss_pred CCCHHHHHHHHHHH--CCEEEEEECCCHHH--HHHHHHC----CC---CEEE------CC-CCCCCCHHHHHHHHHHHHH
T ss_conf 76699999999863--78899993484679--9999867----99---9897------89-9887727899989999998
Q ss_pred H-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-------------------------CCCHHHHHHHCCE
Q ss_conf 6-7877200128996164420346899998620453312467-------------------------6534776422357
Q gi|254780506|r 154 F-KGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-------------------------TKNLPEICRTADI 207 (306)
Q Consensus 154 y-~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-------------------------T~~l~~~~~~ADi 207 (306)
+ .+-.++|++++++|....|-.-+..++..-|+.+++|..+ |.|+.+.++.||+
T Consensus 147 ~~~~~~l~glkva~vGD~~nv~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDv 226 (341)
T PRK02255 147 LPAGKKLEDCKVVFVGDATQVCSSLMFITTKMGMDFVHFGPKGFQLPEEHLAIARENCEVSGGSVLVTDDADEAVKDADF 226 (341)
T ss_pred HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCE
T ss_conf 60179845656887268534488999999975998999879746899999999999999739979999788887257987
Q ss_pred EEE
Q ss_conf 365
Q gi|254780506|r 208 LVV 210 (306)
Q Consensus 208 vIs 210 (306)
|.+
T Consensus 227 vyt 229 (341)
T PRK02255 227 IYT 229 (341)
T ss_pred EEE
T ss_conf 851
No 53
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.06 E-value=0.0019 Score=44.81 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=121.8
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCHHHHHHHHHCCCCC------------CHHHCCHHHH
Q ss_conf 97000024741112266999999852312212588834-6887113788986068743------------5132155338
Q gi|254780506|r 61 GFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQL-PLPSTVSEQSIIQSIVPEK------------DVDGLHVVNA 127 (306)
Q Consensus 61 GI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQl-PLP~~id~~~i~~~I~p~K------------DVDGl~~~N~ 127 (306)
+-+++.+ +.++++|+.+.+. +.+.+|... |+ +. +++++.+-.| |+|..+..++
T Consensus 25 ~~~~~~~---~~t~~~el~~~~~------dadi~i~~~~~i----~~-~~l~~ap~LK~I~~~g~G~d~ID~~aa~~~gI 90 (317)
T PRK06487 25 FDELQLH---AATRPEQVAERLQ------GAQVAISNKVAL----DA-AALAAAPQLKLILVAATGTNNVDLAAARERGI 90 (317)
T ss_pred CCCEEEE---CCCCHHHHHHHHC------CCCEEEECCCCC----CH-HHHHCCCCCEEEEECCCCCCCCCHHHHHHCCC
T ss_conf 9957995---6999899999848------991999689712----89-99934999819988883632206999997899
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHH----HH-----------------------CCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 8873047788756766799999999----86-----------------------78772001289961644203468999
Q gi|254780506|r 128 GKVMIGDFTTGLVPCTPAGAILLIE----QF-----------------------KGCDLSGQHAVVIGRSNLFGKPMGQL 180 (306)
Q Consensus 128 g~l~~~~~~~~~~PcTp~av~~ll~----~y-----------------------~~i~l~Gk~vvVvGrs~~VG~Pla~l 180 (306)
...+......++++.-++.++. ++ ...++.||++.|+|-|+ +|+-+|.+
T Consensus 91 ---~V~n~pg~~~~~VAE~~l~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~eL~gktvGIiG~G~-IG~~va~~ 166 (317)
T PRK06487 91 ---TVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGE-LGGAVARL 166 (317)
T ss_pred ---EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEECCCH-HHHHHHHH
T ss_conf ---89978986837999999999999985458999999828433365555347765430597899978676-89999999
Q ss_pred HHHHCCCEEECCCCC-------CCHHHHHHHCCEEEEECCC----CCCCCCCC---CCCCCEEEEEEEEECCCCC-----
Q ss_conf 986204533124676-------5347764223573652244----32122010---4766269983111112676-----
Q gi|254780506|r 181 LLSRNATVTMAHSKT-------KNLPEICRTADILVVAVGR----PRMVQVDW---IKTGSLVIDVGINRINSPQ----- 241 (306)
Q Consensus 181 L~~~~atVti~hs~T-------~~l~~~~~~ADivIsAvG~----p~~i~~~~---vk~gavvIDvGi~~~~~~~----- 241 (306)
+..-|+.|..+.... -.+++..++||||+..+.- -++|..+. .|+|+++|++|=-.+-|.+
T Consensus 167 ~~~fg~~V~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~Mk~~a~lIN~aRG~lVde~aL~~A 246 (317)
T PRK06487 167 AEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADA 246 (317)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 97489999999288886424505799998738856873357611211579999985389978997068654699999999
Q ss_pred CCCCEEE--C-CCC-HH--HH--H-----H-CCEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6885684--1-775-67--87--3-----1-44008986986868999999999999999868
Q gi|254780506|r 242 LGKTVLV--G-DVA-DE--CK--S-----V-VGAITPVPGGVGPMTIAMLMANTVIAAYRSLG 290 (306)
Q Consensus 242 ~~~~~~~--G-Dvd-~~--~~--~-----~-a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~ 290 (306)
-..+++. | ||- .| .. + . --.+||=-||.-.=+..-+..-+++...+-+.
T Consensus 247 L~~g~i~gAalDV~~~EP~~~~~pl~~~~~pNvilTPHia~~t~ea~~~~~~~~~~ni~~fl~ 309 (317)
T PRK06487 247 LRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFA 309 (317)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 984994189995899989999993453799989986853506099999999999999999987
No 54
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.92 E-value=0.0034 Score=43.05 Aligned_cols=149 Identities=18% Similarity=0.267 Sum_probs=95.1
Q ss_pred CCCCCEEEEECCC-CCCH------HHHHHHHHCCCCC----CHHHCCHHH--HHHHHHCCC----CCCC------CCCCH
Q ss_conf 1221258883468-8711------3788986068743----513215533--888730477----8875------67667
Q gi|254780506|r 88 DDSIHGILVQLPL-PSTV------SEQSIIQSIVPEK----DVDGLHVVN--AGKVMIGDF----TTGL------VPCTP 144 (306)
Q Consensus 88 d~~V~GIlvQlPL-P~~i------d~~~i~~~I~p~K----DVDGl~~~N--~g~l~~~~~----~~~~------~PcTp 144 (306)
-..+.|+++..|| |+-+ -.++++++....+ ||-||.-|. .|++-.+.. .-.| -.-|+
T Consensus 68 G~vieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Ta 147 (351)
T COG5322 68 GKVIEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTA 147 (351)
T ss_pred CCEEEEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCH
T ss_conf 54888999706558899865879999999999999987187178405326433143334420113788775356775102
Q ss_pred HH-HHHHHHHH--CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC---------------------CHHH
Q ss_conf 99-99999986--787720012899616442034689999862045331246765---------------------3477
Q gi|254780506|r 145 AG-AILLIEQF--KGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK---------------------NLPE 200 (306)
Q Consensus 145 ~a-v~~ll~~y--~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~---------------------~l~~ 200 (306)
.+ |--.++++ .|++++-.++.|+|....+|--++.+|..+.......|+.+. +-.+
T Consensus 148 yaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~ 227 (351)
T COG5322 148 YAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYA 227 (351)
T ss_pred HHHHHHHHHHHHHHCCCHHHCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 89888999999985868777857872478548999998763466779986351876414665532015688716415410
Q ss_pred HHHHCCEEEEECCC-CCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 64223573652244-3212201047662699831111
Q gi|254780506|r 201 ICRTADILVVAVGR-PRMVQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 201 ~~~~ADivIsAvG~-p~~i~~~~vk~gavvIDvGi~~ 236 (306)
+...++++-+|.-- -..|.+.++|||++++|.|.-+
T Consensus 228 ~~~e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~ 264 (351)
T COG5322 228 LPQEDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPK 264 (351)
T ss_pred CCCCCEEEEEEECCCCCEECHHHCCCCEEEECCCCCC
T ss_conf 4461339999616998521553336970897487576
No 55
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.87 E-value=0.0042 Score=42.41 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=18.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH-HCCCEEE
Q ss_conf 72001289961644203468999986-2045331
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLS-RNATVTM 190 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~-~~atVti 190 (306)
.-.|.++.++|. +|.|+...+.. .+..+.+
T Consensus 145 ~~~g~~~~~~GN---IG~p~l~~~~~~~~~d~~V 175 (481)
T PRK01438 145 RAAGLRAAAVGN---IGVPVLDAVRGPDGYDVLA 175 (481)
T ss_pred HHCCCCEEEEEE---CCHHHHHHHCCCCCCCEEE
T ss_conf 966997079962---5677776422888860899
No 56
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.83 E-value=0.0041 Score=42.51 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=64.9
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC----------CCHHHHHHHCCEEEEECCC----CCCCCCC
Q ss_conf 8772001289961644203468999986204533124676----------5347764223573652244----3212201
Q gi|254780506|r 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT----------KNLPEICRTADILVVAVGR----PRMVQVD 221 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T----------~~l~~~~~~ADivIsAvG~----p~~i~~~ 221 (306)
+.++.||++.|+|.++ +|+-+|.++..-|+.|..++.+. .++++..++||+|...+.- .++|..+
T Consensus 141 g~~l~gktvGIiG~G~-IG~~va~~~~~fg~~Vi~yD~~~~~~~~~~~~~~sleell~~sDiIslh~Plt~~T~~lIn~~ 219 (330)
T PRK12480 141 SKPVKNMTVAIIGTGR-IGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKA 219 (330)
T ss_pred CCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECCCHHHHHHHCCEEEECCCCCHHHHCCHHHH
T ss_conf 7523586899967588-999999998756998999899864221213232789999875999997376853312004899
Q ss_pred C---CCCCCEEEEEEEE
Q ss_conf 0---4766269983111
Q gi|254780506|r 222 W---IKTGSLVIDVGIN 235 (306)
Q Consensus 222 ~---vk~gavvIDvGi~ 235 (306)
. .|+|+++|+++=-
T Consensus 220 ~l~~MK~~ailINtaRG 236 (330)
T PRK12480 220 MFDHVKKGAILVNAARG 236 (330)
T ss_pred HHHHCCCCCEEEECCCC
T ss_conf 99757999769972786
No 57
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.82 E-value=0.0041 Score=42.53 Aligned_cols=79 Identities=23% Similarity=0.425 Sum_probs=64.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC---------CCHHHHHHHCCEEEEECCC----CCCCCCC---
Q ss_conf 72001289961644203468999986204533124676---------5347764223573652244----3212201---
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT---------KNLPEICRTADILVVAVGR----PRMVQVD--- 221 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T---------~~l~~~~~~ADivIsAvG~----p~~i~~~--- 221 (306)
+++||++.|||-++ +|+-+|.++..-|+.|......- .++++..++||+|+..+.- -++|..+
T Consensus 142 ~L~gktlGIvG~G~-IG~~va~~l~~fGm~V~~~d~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~ 220 (311)
T PRK08410 142 EIKGKKWGIIGLGT-IGKRVAKIAQAFGAEVVYYSTSGKNKNSEYERLSLEELLKTSDIISIHAPLNEKTKNLINYEELK 220 (311)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECCHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 10588899984474-89999999997699899989843124578135789999873780145335762223401289996
Q ss_pred CCCCCCEEEEEEEEEC
Q ss_conf 0476626998311111
Q gi|254780506|r 222 WIKTGSLVIDVGINRI 237 (306)
Q Consensus 222 ~vk~gavvIDvGi~~~ 237 (306)
..|+|+++|+++=-.+
T Consensus 221 ~Mk~~a~lIN~aRG~i 236 (311)
T PRK08410 221 LLKDGAILINVGRGGI 236 (311)
T ss_pred HCCCCCEEEEECCCCC
T ss_conf 3045755999257422
No 58
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.82 E-value=0.06 Score=34.38 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEECCCCCC-C-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 9867899999999999983970000247411-1-2266999999852312212588834688711378898606874351
Q gi|254780506|r 42 NDPASCSYVSAKTRMAKHCGFHSVQYNFPVD-I-SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDV 119 (306)
Q Consensus 42 ddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~-~-se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDV 119 (306)
..|..++-+.. +-++.++|.....+..... . ..+-+.++++-|+.= +|+|++-.|-...+ ..+... .+|
T Consensus 53 ~epSTRTR~SF-E~A~~~LGg~~i~l~~~~s~~~kgEsi~DT~~vls~~--~D~iv~R~~~~~~~--~~~a~~----s~v 123 (332)
T PRK04284 53 EKDSTRTRCAF-EVAAHDQGAHVTYLGPTGSQMGKKETTKDTARVLGGM--YDGIEYRGFSQRTV--ETLAEY----SGV 123 (332)
T ss_pred CCCCCHHHHHH-HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH--CCEEEEECCCHHHH--HHHHHH----CCC
T ss_conf 37972069999-9999985996898488645278877899999999962--88899953461899--999986----799
Q ss_pred HHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCEEECCCCC--
Q ss_conf 321553388873047788756766799-999999867877200128996164-4203468999986204533124676--
Q gi|254780506|r 120 DGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRS-NLFGKPMGQLLLSRNATVTMAHSKT-- 195 (306)
Q Consensus 120 DGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs-~~VG~Pla~lL~~~~atVti~hs~T-- 195 (306)
--.| | ......||-+++ ++++.+++ +-++.|++++.+|.+ +.|-..+..++...|+.+++|+.++
T Consensus 124 ---PViN------g-~~~~~HPtQ~L~D~~Ti~E~~-~~~~~~lkva~vGD~~nnVa~S~~~~~~~~g~~~~~~~P~~~~ 192 (332)
T PRK04284 124 ---PVWN------G-LTDEDHPTQVLADFLTAKEVL-KKPYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELN 192 (332)
T ss_pred ---CEEE------C-CCCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf ---9886------8-998777268998889999971-3665672899967988651157999999759937997585558
Q ss_pred -----------------------CCHHHHHHHCCEEEE
Q ss_conf -----------------------534776422357365
Q gi|254780506|r 196 -----------------------KNLPEICRTADILVV 210 (306)
Q Consensus 196 -----------------------~~l~~~~~~ADivIs 210 (306)
.|+++.++.||||.+
T Consensus 193 p~~~~~~~~~~~~~~~g~~~~~~~d~~~av~~aDviyt 230 (332)
T PRK04284 193 PTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYT 230 (332)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEE
T ss_conf 89999999999999719908995149888525889987
No 59
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.78 E-value=0.0047 Score=42.07 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC---------CCHHHHHHHCCEEEEECCC----CCCCCCCC-
Q ss_conf 772001289961644203468999986204533124676---------5347764223573652244----32122010-
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT---------KNLPEICRTADILVVAVGR----PRMVQVDW- 222 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T---------~~l~~~~~~ADivIsAvG~----p~~i~~~~- 222 (306)
.++.||++.|+|-++ +|+-+|.++..-|+.|....+.. .++.+..++||+|+..+.- .++|..+.
T Consensus 118 ~~L~gktvGIiG~G~-IG~~vA~~~~afg~~V~~~~r~~~~~~~~~~~~~~~ell~~sDivslh~Plt~~T~~lI~~~~l 196 (303)
T PRK06436 118 KLLYNKSLGILGYGG-IGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML 196 (303)
T ss_pred CEECCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCHHHHHHHCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 441188899989765-6999999999779889998985322457455268999997599999925786556777689999
Q ss_pred --CCCCCEEEEEEEEEC
Q ss_conf --476626998311111
Q gi|254780506|r 223 --IKTGSLVIDVGINRI 237 (306)
Q Consensus 223 --vk~gavvIDvGi~~~ 237 (306)
.|+|+++|+++=-.+
T Consensus 197 ~~MK~~a~lIN~aRG~i 213 (303)
T PRK06436 197 SLFRKGLAIINVARADV 213 (303)
T ss_pred HHCCCCCEEEEECCCCE
T ss_conf 85699978999278654
No 60
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.78 E-value=0.0048 Score=42.03 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=58.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCC-CCCCCCCCCCCCEEEEEEEEE
Q ss_conf 0128996164420346899998620453312467653477642235736522443-212201047662699831111
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRP-RMVQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p-~~i~~~~vk~gavvIDvGi~~ 236 (306)
=++|.|.+|+.-=..-++..+.+.+-.+..| .+.++.++.||||++|+... -+++.+|+|||+.|.=+|-..
T Consensus 150 i~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~----~~~~~av~~aDII~taT~s~~Pv~~~~~l~~G~hI~avGs~~ 222 (313)
T PRK06141 150 IKQVRVWGRNPAKAAALAAELREQGFDAEVV----TDLEAAVRQADIISCATLSTEPLVRGEWLRPGTHLDLVGSFT 222 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEE----CCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 7589999389899999999998509975995----899998610877997168898644644467872697635899
No 61
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.74 E-value=0.0066 Score=41.07 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=33.7
Q ss_pred CHHHHHHHCCEEEEECCC-------CCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 347764223573652244-------321220104766269983111112
Q gi|254780506|r 197 NLPEICRTADILVVAVGR-------PRMVQVDWIKTGSLVIDVGINRIN 238 (306)
Q Consensus 197 ~l~~~~~~ADivIsAvG~-------p~~i~~~~vk~gavvIDvGi~~~~ 238 (306)
+.++.++.||||++|+.. .-+++.+|+|||+.|.-+|-...+
T Consensus 216 s~eeav~~aDIVvtaTs~~~~~ps~~P~~~~~wlkpGahv~~~g~~~~d 264 (379)
T PRK06199 216 SEEEVVRGSDIVTYCTSGEAGDPSAYPYVKREWVKPGAFLLMPAACRLD 264 (379)
T ss_pred CHHHHHHCCCEEEECCCCCCCCCCCCCEECHHHCCCCCEEECCCCCCCC
T ss_conf 9999973799999777788777777847459995999889455677678
No 62
>KOG0069 consensus
Probab=96.73 E-value=0.0047 Score=42.10 Aligned_cols=78 Identities=23% Similarity=0.460 Sum_probs=64.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC--------------CHHHHHHHCCEEEEECCC----CCC
Q ss_conf 87720012899616442034689999862045331246765--------------347764223573652244----321
Q gi|254780506|r 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK--------------NLPEICRTADILVVAVGR----PRM 217 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~--------------~l~~~~~~ADivIsAvG~----p~~ 217 (306)
+.+++||+|.++|-++ .|+-+|..|..-| .....|++++ +..+...++|+||++..- .++
T Consensus 157 g~~~~gK~vgilG~G~-IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~l 234 (336)
T KOG0069 157 GYDLEGKTVGILGLGR-IGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHL 234 (336)
T ss_pred CCCCCCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHCCEEEEECCCCHHHHHH
T ss_conf 6665677799962747-8899999635326-6255411357763668874354367888873288799926897788877
Q ss_pred CCCC---CCCCCCEEEEEEEE
Q ss_conf 2201---04766269983111
Q gi|254780506|r 218 VQVD---WIKTGSLVIDVGIN 235 (306)
Q Consensus 218 i~~~---~vk~gavvIDvGi~ 235 (306)
+.++ |.|+|+++|+++=-
T Consensus 235 iNk~~~~~mk~g~vlVN~aRG 255 (336)
T KOG0069 235 INKKFIEKMKDGAVLVNTARG 255 (336)
T ss_pred HHHHHHHHCCCCEEEEECCCC
T ss_conf 609999864797699964642
No 63
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.72 E-value=0.0048 Score=42.06 Aligned_cols=159 Identities=16% Similarity=0.212 Sum_probs=97.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC------------CHHHCCHHHHHHH
Q ss_conf 0000247411122669999998523122125888346887113788986068743------------5132155338887
Q gi|254780506|r 63 HSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEK------------DVDGLHVVNAGKV 130 (306)
Q Consensus 63 ~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~K------------DVDGl~~~N~g~l 130 (306)
..++..++ .++++|+++.|+. .|.++... ..++.+ ++++.+-.| |+|..+..++
T Consensus 24 ~~~~~~~~-~t~~eel~e~i~d------ad~ii~~~---~~i~~~-vl~~ap~LK~I~~~g~G~D~ID~~aa~~~gI--- 89 (314)
T PRK06932 24 EHEWTEYD-HTSADQTIERAKD------ADIVITSK---VIFSRE-TLQQLPKLKLIAITATGTNNVDLVAAKELGI--- 89 (314)
T ss_pred CCEEEECC-CCCHHHHHHHHCC------CCEEEECC---CCCCHH-HHHCCCCCEEEEECCCCCCCCCHHHHHHCCE---
T ss_conf 85079789-9998999998579------98999789---863999-9953999809988983456478999974997---
Q ss_pred HHCCCCCCCCCCCHHHHHHHH----HHH-----------------------CCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 304778875676679999999----986-----------------------78772001289961644203468999986
Q gi|254780506|r 131 MIGDFTTGLVPCTPAGAILLI----EQF-----------------------KGCDLSGQHAVVIGRSNLFGKPMGQLLLS 183 (306)
Q Consensus 131 ~~~~~~~~~~PcTp~av~~ll----~~y-----------------------~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~ 183 (306)
...+.......+.+.-++.++ ++. ...++.||++.|||.++ +|+-+|.++..
T Consensus 90 ~V~n~pg~~~~~VAE~~i~liL~l~r~i~~~~~~~~~~~W~~~~~~~~~~~~~~~L~gktvGIiG~G~-IG~~va~~~~~ 168 (314)
T PRK06932 90 TVKNVTGYSSTTVPEHVLGLIFALKHSLMGWYRDQLSAKWAECKQFCYFDYPITDVRGSTLGVFGKGC-LGSEVGRLATA 168 (314)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEECCCH-HHHHHHHHHHC
T ss_conf 99938986727899999999999997799999999838643246643257754400386889976352-88899999852
Q ss_pred HCCCEEECCCCC--------CCHHHHHHHCCEEEEECCC----CCCCCCCC---CCCCCEEEEEEEEE
Q ss_conf 204533124676--------5347764223573652244----32122010---47662699831111
Q gi|254780506|r 184 RNATVTMAHSKT--------KNLPEICRTADILVVAVGR----PRMVQVDW---IKTGSLVIDVGINR 236 (306)
Q Consensus 184 ~~atVti~hs~T--------~~l~~~~~~ADivIsAvG~----p~~i~~~~---vk~gavvIDvGi~~ 236 (306)
-|+.|....++. .++.+..++||+|...+.- .++|..+. .|+|+++|+++=-.
T Consensus 169 fGm~V~~~~~~~~~~~~~~~~~l~ell~~sDiIslh~Plt~eT~~li~~~~l~~MK~~a~lIN~aRG~ 236 (314)
T PRK06932 169 LGMKVLYAEHKGATECREGYTPFEEVLKQADIVTLHCPLTESTQNLINAETLALMKPTAFLINTGRGP 236 (314)
T ss_pred CCCEEEEECCCCCHHHCCCCCCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 89889997876612323465759999623583689511301023366699973578871999826755
No 64
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.58 E-value=0.0072 Score=40.81 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=53.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECC---CCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 1289961644203468999986204533124676534776422357365224---4321220104766269983111
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVG---RPRMVQVDWIKTGSLVIDVGIN 235 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG---~p~~i~~~~vk~gavvIDvGi~ 235 (306)
++|.|.+|+.-=-.-++.-|...|..|+.|. ++++-+++||||++|+. ..-+++.+|+|||+-|-=||-.
T Consensus 155 ~~V~v~~r~~~~a~~~a~~l~~~g~~v~~~~----s~~eAv~~ADIIvTaT~s~~~~Pil~~~~v~pGtHInaVGad 227 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVRCR----SVAEAVEGADIITTVTADKANATILTPDMIEPGMHINAVGGD 227 (346)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEC----CHHHHHHCCCEEEEECCCCCCCCCCCHHHCCCCCEEEEECCC
T ss_conf 6899982887999999999872698089949----999997219888871147788860238775999579852799
No 65
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.57 E-value=0.007 Score=40.89 Aligned_cols=204 Identities=18% Similarity=0.243 Sum_probs=113.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC------------CHHHCCHHHHHHHHHCCCCC
Q ss_conf 411122669999998523122125888346887113788986068743------------51321553388873047788
Q gi|254780506|r 70 PVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEK------------DVDGLHVVNAGKVMIGDFTT 137 (306)
Q Consensus 70 ~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~K------------DVDGl~~~N~g~l~~~~~~~ 137 (306)
..+.+++||++.|. ++||+++-.-- .++.+ ++++-+-.| |+|..+..++ ...+ ...
T Consensus 26 ~~~~~~~el~~~i~------~~d~livrs~t--~v~~~-~l~~a~~LK~I~r~GvG~DnID~~aa~~~GI--~V~n-tP~ 93 (524)
T PRK13581 26 KTGLDKEELLEIIG------DYDALIVRSAT--KVTAE-VIEAAKNLKVIGRAGVGVDNVDIPAATRRGI--IVVN-APT 93 (524)
T ss_pred CCCCCHHHHHHHHC------CCCEEEECCCC--CCCHH-HHHCCCCCEEEEECCCCCCHHCHHHHHHCCC--EEEE-CCC
T ss_conf 89989999998847------99699987899--82999-9926999769998881675116999987899--8994-899
Q ss_pred CCCCCCHHHHHHHH---------------------HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC-
Q ss_conf 75676679999999---------------------98678772001289961644203468999986204533124676-
Q gi|254780506|r 138 GLVPCTPAGAILLI---------------------EQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT- 195 (306)
Q Consensus 138 ~~~PcTp~av~~ll---------------------~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T- 195 (306)
+-.-.++.-++.++ +.|.|.++.||++-|||-++ +|+-+|.++..-|..|...+.+.
T Consensus 94 ~n~~svAE~~i~l~l~l~R~i~~~~~~~~~g~W~r~~~~G~eL~gktlGIiG~G~-IG~~vA~~~~~fgm~Vi~yDP~~~ 172 (524)
T PRK13581 94 GNTISAAEHTIALMLALARNIPQADASLKAGKWERKKFMGVELYGKTLGVIGLGR-IGSEVAKRAKAFGMKVIAYDPYIS 172 (524)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 7728899999999999848977999999839967556566213698899977675-789999999854974788777644
Q ss_pred -----------CCHHHHHHHCCEEEEECCC----CCCCCCCC---CCCCCEEEEEEEEECCCC-----CCCCCEEEC---
Q ss_conf -----------5347764223573652244----32122010---476626998311111267-----668856841---
Q gi|254780506|r 196 -----------KNLPEICRTADILVVAVGR----PRMVQVDW---IKTGSLVIDVGINRINSP-----QLGKTVLVG--- 249 (306)
Q Consensus 196 -----------~~l~~~~~~ADivIsAvG~----p~~i~~~~---vk~gavvIDvGi~~~~~~-----~~~~~~~~G--- 249 (306)
.++++..++||+|...+.. -++|..+. .|+|+++|+++=-.+-|. .-..+++.|
T Consensus 173 ~~~~~~~gv~~~~l~ell~~sD~IslH~Plt~eT~~li~~~~~~~MK~ga~lIN~aRG~iVde~aL~~AL~~g~i~gAal 252 (524)
T PRK13581 173 PERAAQLGVELVELDELLARADFITLHTPLTPETRNLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAAL 252 (524)
T ss_pred HHHHHHCCCEEEEHHHHHHHCCEEEECCCCCHHHHHHCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEE
T ss_conf 66798719668608997310889999367861554430799996068998699748876058999999996499765997
Q ss_pred CCC-HH------HHHHCC-EECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 775-67------873144-00898698686899999999999999986
Q gi|254780506|r 250 DVA-DE------CKSVVG-AITPVPGGVGPMTIAMLMANTVIAAYRSL 289 (306)
Q Consensus 250 Dvd-~~------~~~~a~-~iTPVPGGVGp~Tva~L~~N~v~aa~~~~ 289 (306)
||- .| ..+.-. .+||= +|--|.-.-..--+.+|++..
T Consensus 253 DVf~~EP~~~~pL~~~~nvi~TPH---iGasT~EAq~~va~~~a~~v~ 297 (524)
T PRK13581 253 DVFEKEPATDSPLFGLPNVIVTPH---LGASTEEAQENVAIQVAEQVI 297 (524)
T ss_pred ECCCCCCCCCHHHHCCCCEEECCC---CCCCHHHHHHHHHHHHHHHHH
T ss_conf 246778999756617998888787---876559999999999999999
No 66
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.50 E-value=0.0099 Score=39.84 Aligned_cols=225 Identities=13% Similarity=0.164 Sum_probs=120.6
Q ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC------------CHHHCCH
Q ss_conf 9983970000247411122669999998523122125888346887113788986068743------------5132155
Q gi|254780506|r 57 AKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEK------------DVDGLHV 124 (306)
Q Consensus 57 a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~K------------DVDGl~~ 124 (306)
.++++..+++..++.+.+.+. ...+. -.+++|+++.. ...++...+-.+ +-.| |++..+.
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~i~~~~--~~~i~~~~l~~~-p~LKlIa~~~~G~D~vDl~aa~~ 87 (324)
T COG1052 16 LERLKEKFEVERYEDDLTPDT--ELAER---LKDADAVITFV--NDRIDAEVLEKL-PGLKLIATRSAGYDNVDLEAAKE 87 (324)
T ss_pred HHHHCCCEEEEEECCCCCCCC--HHHHH---HCCCCEEEECC--CCCCCHHHHHHC-CCCEEEEEECCCCCCCCHHHHHH
T ss_conf 987313578999315776530--57888---64786999726--787589999748-89369999243667504988987
Q ss_pred HHHHHHHHCCCCCCCCC-CCHHHHHHHH----HH---------------------HCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 33888730477887567-6679999999----98---------------------6787720012899616442034689
Q gi|254780506|r 125 VNAGKVMIGDFTTGLVP-CTPAGAILLI----EQ---------------------FKGCDLSGQHAVVIGRSNLFGKPMG 178 (306)
Q Consensus 125 ~N~g~l~~~~~~~~~~P-cTp~av~~ll----~~---------------------y~~i~l~Gk~vvVvGrs~~VG~Pla 178 (306)
.++ ..-+ .+++.| +||.=.+.|+ ++ ..+.++.||++-|+|-++ +|+-+|
T Consensus 88 ~gI---~Vtn-vp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~Gr-IG~avA 162 (324)
T COG1052 88 RGI---TVTN-VPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGR-IGQAVA 162 (324)
T ss_pred CCE---EEEE-CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCH-HHHHHH
T ss_conf 894---9995-89988416999999999998524488999987176332566554444467788889978488-999999
Q ss_pred HHHHHHCCCEEECCCCCC------------CHHHHHHHCCEEEEECCC----CCCCCCC---CCCCCCEEEEEEEEECCC
Q ss_conf 999862045331246765------------347764223573652244----3212201---047662699831111126
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTK------------NLPEICRTADILVVAVGR----PRMVQVD---WIKTGSLVIDVGINRINS 239 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~------------~l~~~~~~ADivIsAvG~----p~~i~~~---~vk~gavvIDvGi~~~~~ 239 (306)
..+..-|+.|.-.+.+.+ ++.+..++||+|+..++- -++|..+ +.|+|+++|++|=-.+-|
T Consensus 163 ~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 163 RRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHCCCEECCHHHHHHHCCEEEEECCCCHHHHHHCCHHHHHHCCCCEEEEECCCCCEEC
T ss_conf 98721796899866887455574058604168999976999999779983766532999997568976999648742165
Q ss_pred C-------CCCCCE-EECCCC-HH-H------HHHC----CEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7-------668856-841775-67-8------7314----40089869868689999999999999998688985
Q gi|254780506|r 240 P-------QLGKTV-LVGDVA-DE-C------KSVV----GAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSP 294 (306)
Q Consensus 240 ~-------~~~~~~-~~GDvd-~~-~------~~~a----~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~ 294 (306)
. +.|+-. .--||. +| . .... -.+||=-|+---=|...+...++...+..+.-..|
T Consensus 243 e~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~ 317 (324)
T COG1052 243 EQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVP 317 (324)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999998097422670116788877880676366899879704413020999999999999999999808999
No 67
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.46 E-value=0.1 Score=32.77 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=110.2
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHC--CCCC-----EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC---
Q ss_conf 00538999999999999999999836--9997-----5999996798678999999999999839700002474111---
Q gi|254780506|r 4 LIDGKVVASVLTDKIAESVAFLKKET--GVQV-----GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI--- 73 (306)
Q Consensus 4 iLdGk~iA~~i~~~lk~~i~~l~~~~--g~~P-----~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~--- 73 (306)
+|+=+.+..+-.+.|-+....+++.. +... +....++ ..|..++... =+.++.++|..+..+... ++
T Consensus 8 llsi~dls~~~i~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF-~epSTRTr~S-Fe~A~~~LGg~~i~~~~~-~ss~~ 84 (308)
T PRK00779 8 FLSLSDLTPEELRELLELAAELKAKRKAGELYKPLKGKTLAMIF-EKPSTRTRVS-FEVGMAQLGGHAIFLSPR-DTQLG 84 (308)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-ECCCCCHHHH-HHHHHHHCCCEEEECCCC-CCCCC
T ss_conf 58600099999999999999998666458767668998899997-0687425573-999886289389966876-56567
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHH
Q ss_conf 2266999999852312212588834688711378898606874351321553388873047788756766799-999999
Q gi|254780506|r 74 SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIE 152 (306)
Q Consensus 74 se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~ 152 (306)
.-+.+.++++-|+.= +|+|++-.|=...+ ..+-+.. ++ --.|. .+ +...||-+++ ++.+.+
T Consensus 85 kgEsl~Dt~~~l~~~--~D~iviR~~~~~~~--~~~a~~~----~v---PVINa----~~---d~~HPtQaL~Dl~Ti~e 146 (308)
T PRK00779 85 RGEPIEDTARVLSRY--VDAIMIRTFEHETL--EELAEYS----TV---PVING----LT---DLSHPCQILADLLTIYE 146 (308)
T ss_pred CCCCHHHHHHHHHHH--CCEEEEECCCCCHH--HHHHHHC----CC---CEEEC----CC---CCCCCHHHHHHHHHHHH
T ss_conf 897899999999854--77999932430118--9998748----98---78967----88---87673899999999999
Q ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC----------------------CCCHHHHHHHCCEEEE
Q ss_conf 867877200128996164420346899998620453312467----------------------6534776422357365
Q gi|254780506|r 153 QFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK----------------------TKNLPEICRTADILVV 210 (306)
Q Consensus 153 ~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~----------------------T~~l~~~~~~ADivIs 210 (306)
++ | +++|++++++|..+.|-+-+..++..-|+.|++|... +.|+.+.++.||+|.+
T Consensus 147 ~~-g-~l~gl~i~~vGD~~nV~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDviyt 224 (308)
T PRK00779 147 HR-G-SIKGKTVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVAKARAIAEASIEVTHDPEEAVKGADVVYT 224 (308)
T ss_pred HH-C-CCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCEEEE
T ss_conf 83-8-677875999838745399999999977998999888302789999999997468958998399999625999985
Q ss_pred E
Q ss_conf 2
Q gi|254780506|r 211 A 211 (306)
Q Consensus 211 A 211 (306)
-
T Consensus 225 d 225 (308)
T PRK00779 225 D 225 (308)
T ss_pred E
T ss_conf 0
No 68
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=96.43 E-value=0.0082 Score=40.40 Aligned_cols=76 Identities=25% Similarity=0.310 Sum_probs=60.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC--------------CCCHHHHHHHCCEEEEECCCCCCCCC-------
Q ss_conf 128996164420346899998620453312467--------------65347764223573652244321220-------
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK--------------TKNLPEICRTADILVVAVGRPRMVQV------- 220 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~--------------T~~l~~~~~~ADivIsAvG~p~~i~~------- 220 (306)
+++.+||-++ .|.|+|.-|.++|..|.+++.. ..++.+.++++|+|++++.-+.-+..
T Consensus 2 ~~Ig~IGlG~-MG~~ma~~L~~~g~~v~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvIi~~l~~~~~v~~V~~~~~g 80 (163)
T pfam03446 2 AKIGFIGLGV-MGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVAAASPAEAAASADVVITMVPAGAAVDAVIFGEDG 80 (163)
T ss_pred CEEEEEEEHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEECCCHHHHHHCCCEEEEECCCHHHHHEEECCCCC
T ss_conf 8899983679-899999999977996999979788779999839955399999986199999925871454022026313
Q ss_pred --CCCCCCCEEEEEEEEECC
Q ss_conf --104766269983111112
Q gi|254780506|r 221 --DWIKTGSLVIDVGINRIN 238 (306)
Q Consensus 221 --~~vk~gavvIDvGi~~~~ 238 (306)
...++|.++||.++...+
T Consensus 81 l~~~~~~g~iiid~sT~~p~ 100 (163)
T pfam03446 81 LLPGLKPGDIIIDGSTISPD 100 (163)
T ss_pred HHHHCCCCCEEEECCCCCHH
T ss_conf 32313589889867989999
No 69
>PRK07574 formate dehydrogenase; Provisional
Probab=96.42 E-value=0.011 Score=39.40 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=89.2
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC--------------CCCHHHHHHHCCEEEEECCC----CCC
Q ss_conf 877200128996164420346899998620453312467--------------65347764223573652244----321
Q gi|254780506|r 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK--------------TKNLPEICRTADILVVAVGR----PRM 217 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~--------------T~~l~~~~~~ADivIsAvG~----p~~ 217 (306)
+++++||++-|||-++ +|+-+|..+..-|..|.-...+ -.++.++.+++|+|...+.- .++
T Consensus 187 ~~EL~GKTlGIVG~Gr-IG~~VArra~aFgm~Vl~yDp~~l~~~~e~~lg~~~~~sldeLl~~sDvVslh~PLt~eT~~L 265 (385)
T PRK07574 187 SYDLEGMTVGTVGAGR-IGLAVLRRLKPFDVTLHYTDRHRLPAEVEQELGLTYHPDVDSLVSVCDVVTIHCPLHPETEHL 265 (385)
T ss_pred CEECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHCCEEEECCCCCHHHHHH
T ss_conf 4326899899989788-999999999977998998588669889999719865689999986289699866798577401
Q ss_pred CCCCC---CCCCCEEEEEEEEECCCCC-----CCCCEE---ECCCC-HH-H-HH------HCCEECCCCCCCCHHHHHHH
Q ss_conf 22010---4766269983111112676-----688568---41775-67-8-73------14400898698686899999
Q gi|254780506|r 218 VQVDW---IKTGSLVIDVGINRINSPQ-----LGKTVL---VGDVA-DE-C-KS------VVGAITPVPGGVGPMTIAML 277 (306)
Q Consensus 218 i~~~~---vk~gavvIDvGi~~~~~~~-----~~~~~~---~GDvd-~~-~-~~------~a~~iTPVPGGVGp~Tva~L 277 (306)
|..+. .|+|+++|+.+=-.+-|.+ ...+++ .+||- +| . .+ .--.+||=-+|.--=..+.+
T Consensus 266 in~~~l~~MK~ga~LVNtARG~iVDe~AL~~AL~sG~i~gaglDV~~~EP~p~dhPl~~lpNv~lTPHiaG~t~~Aq~R~ 345 (385)
T PRK07574 266 FDKDVLSRMKRGSYLVNTARGKIVDRDAVVEALESGHLAGYAGDVWFPQPAPADHPWRTMPRNAMTPHISGTTLSAQARY 345 (385)
T ss_pred CCHHHHHCCCCCCEEEECCCCHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHCCCCCEECCCCCCCCHHHHHHH
T ss_conf 02999943899818998886110199999999972980499967899889989980222996168885454869999999
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999999986889
Q gi|254780506|r 278 MANTVIAAYRSLGMK 292 (306)
Q Consensus 278 ~~N~v~aa~~~~~~~ 292 (306)
..-+.+--++-+.-+
T Consensus 346 a~g~~~~l~~~~~g~ 360 (385)
T PRK07574 346 AAGTREILECFFEGR 360 (385)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 998999999996599
No 70
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.39 E-value=0.11 Score=32.51 Aligned_cols=188 Identities=17% Similarity=0.205 Sum_probs=109.7
Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHCC--CC----CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-
Q ss_conf 65005389999999999999999998369--99----759999967986789999999999998397000024741112-
Q gi|254780506|r 2 GSLIDGKVVASVLTDKIAESVAFLKKETG--VQ----VGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS- 74 (306)
Q Consensus 2 a~iLdGk~iA~~i~~~lk~~i~~l~~~~g--~~----P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s- 74 (306)
-.+|+-+.+...-...|-+....+++... .. .+....++- .|..++.+.. +.++.++|..+..+.- ++.+
T Consensus 7 k~~lsi~Dls~~ei~~ll~~A~~~K~~~~~~~~~~L~gk~v~~lF~-epSTRTR~SF-e~A~~~LGg~~i~l~~-~~s~~ 83 (304)
T PRK00856 7 KHLLSIEDLSREEIELLLDTAEQFKAVPRVKKVPLLRGKTVANLFF-EPSTRTRLSF-ELAAKRLGADVINFSA-STSSV 83 (304)
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE-CCCCHHHHHH-HHHHHHCCCEEEECCC-CCCCC
T ss_conf 8808722199999999999999997332126786568988999971-5874057889-9999838966987066-64655
Q ss_pred --HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHH
Q ss_conf --266999999852312212588834688711378898606874351321553388873047788756766799-99999
Q gi|254780506|r 75 --QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLI 151 (306)
Q Consensus 75 --e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll 151 (306)
-+-+.++++-|+.= -+|+|++-.|-..-+.+-.-...|+. .|. ++. ..-.||-+++ ++++.
T Consensus 84 ~kgEsi~DTarvls~y-~~D~iv~R~~~~~~~~~~a~~s~vPV---------INa-----gdg-~~eHPtQaLaDl~Ti~ 147 (304)
T PRK00856 84 SKGETLADTIRTLSAM-GADAIVIRHPQSGAARLLAEKVNVPV---------INA-----GDG-SHQHPTQALLDLLTIR 147 (304)
T ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHHCCCCE---------EEC-----CCC-CCCCCHHHHHHHHHHH
T ss_conf 6897899999999972-79799991686569999998689988---------979-----999-7768469998799999
Q ss_pred HHHCCCCCCCCEEEEECCCCC--CHHHHHHHHHHHCCCEEECCCC-------------CCCHHHHHHHCCEEEE
Q ss_conf 986787720012899616442--0346899998620453312467-------------6534776422357365
Q gi|254780506|r 152 EQFKGCDLSGQHAVVIGRSNL--FGKPMGQLLLSRNATVTMAHSK-------------TKNLPEICRTADILVV 210 (306)
Q Consensus 152 ~~y~~i~l~Gk~vvVvGrs~~--VG~Pla~lL~~~~atVti~hs~-------------T~~l~~~~~~ADivIs 210 (306)
+++ | +++|++++.+|.... |-.-++.++..-|..+++|... +.|+++.++.||+|.+
T Consensus 148 e~~-g-~l~glki~~vGD~~n~rv~~Sl~~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~d~~~av~~aDvvy~ 219 (304)
T PRK00856 148 EEF-G-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGIELGVRVHTDLEEVIEEADVVMM 219 (304)
T ss_pred HHH-C-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCEEEECCHHHHHCCCCEEEE
T ss_conf 863-8-77787699984787456799999999976986999778533884446983998699999626989998
No 71
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.35 E-value=0.025 Score=37.06 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=49.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH-CCCEEECCCCCCCHHHHHHHCCEEEEECCC-CCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 12899616442034689999862-045331246765347764223573652244-32122010476626998311111
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSR-NATVTMAHSKTKNLPEICRTADILVVAVGR-PRMVQVDWIKTGSLVIDVGINRI 237 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~-~atVti~hs~T~~l~~~~~~ADivIsAvG~-p~~i~~~~vk~gavvIDvGi~~~ 237 (306)
+++.|.+|+.-=..-++.-+..+ +-.|..+ .+.++.+++||||++|+.. --+|+.+|+++|+.|.=+|-+.-
T Consensus 144 ~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~----~~~e~av~~aDiI~taT~s~~Pv~~~~~l~~g~hi~aiGa~~p 217 (302)
T PRK06407 144 KRIRVYSRNFDHARAFAERFSKEFGVDIRPV----DNAEAALRDADTITSITNSDTPIFNRKYLGDEYHVNLAGSNYP 217 (302)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEE----CCHHHHHHHCCEEEEECCCCCCCCCHHHCCCCCEEEEECCCCC
T ss_conf 3899980888999999999864409957994----8999998349999994189886715888799948996379999
No 72
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.26 E-value=0.012 Score=39.15 Aligned_cols=124 Identities=22% Similarity=0.347 Sum_probs=76.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC--------------CCHHHHHHHCCEEEEECCCCCCCCCC------
Q ss_conf 1289961644203468999986204533124676--------------53477642235736522443212201------
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT--------------KNLPEICRTADILVVAVGRPRMVQVD------ 221 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T--------------~~l~~~~~~ADivIsAvG~p~~i~~~------ 221 (306)
.+|-+||-+. -|.|+|.-|.++|..|++.++.. .++.+...++|+||+++.-+.-+..-
T Consensus 2 MkIgfIGlG~-MG~~ma~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~~dvvi~~l~~~~~v~~v~~g~~g 80 (295)
T PRK11559 2 MKVGFIGLGI-MGKPMSKNLLKAGYSLVVYDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 80 (295)
T ss_pred CEEEEECCHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCHHHHHHCCCC
T ss_conf 7899984057-699999999978995899929999999999859920399999984388789966898107766307766
Q ss_pred ---CCCCCCEEEEEEEE------------------ECCCCCCCC---------CEEE-CCCC-HH-HHHHCCEECC---C
Q ss_conf ---04766269983111------------------112676688---------5684-1775-67-8731440089---8
Q gi|254780506|r 222 ---WIKTGSLVIDVGIN------------------RINSPQLGK---------TVLV-GDVA-DE-CKSVVGAITP---V 265 (306)
Q Consensus 222 ---~vk~gavvIDvGi~------------------~~~~~~~~~---------~~~~-GDvd-~~-~~~~a~~iTP---V 265 (306)
..++|.++||.++. ++|.|-.|. .-++ ||-+ ++ +.+.-..+.. .
T Consensus 81 i~~~~~~g~iiid~sT~~p~~~~~~a~~~~~~g~~~lDaPVsGg~~~A~~G~L~~mvgG~~~~~~~~~piL~~~~~~i~~ 160 (295)
T PRK11559 81 IIEGAKPGTVLIDMSSIAPLASREISEALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVH 160 (295)
T ss_pred CHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 01138999889989999999999999999965983894247688688984881499679889999999999426556034
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 698686899999999999999
Q gi|254780506|r 266 PGGVGPMTIAMLMANTVIAAY 286 (306)
Q Consensus 266 PGGVGp~Tva~L~~N~v~aa~ 286 (306)
-|.+|-=+..-|..|++.+..
T Consensus 161 ~G~~G~g~~~Kl~nN~l~~~~ 181 (295)
T PRK11559 161 TGEIGAGNVTKLANQVIVALN 181 (295)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 289458999999999999999
No 73
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.19 E-value=0.017 Score=38.21 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=98.3
Q ss_pred HHHCCCC-EEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHH----HCCHHHHHHHH
Q ss_conf 9983970-000247411122669999998523122125888346887113788986068743513----21553388873
Q gi|254780506|r 57 AKHCGFH-SVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD----GLHVVNAGKVM 131 (306)
Q Consensus 57 a~~lGI~-~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVD----Gl~~~N~g~l~ 131 (306)
.++.|.. .+. .+...+++||.+.|. ++|++++-..- .++.+ ++++-+-.|=|= |+....+-...
T Consensus 27 L~~~G~~~v~~--~~~~l~~eeL~~~i~------~~d~liiRS~t--~vt~~-vi~~a~~Lk~I~r~GvG~dnIDl~aa~ 95 (409)
T PRK11790 27 LRAAGYTNIEY--HKGALDEEELKEAIK------DAHFIGIRSRT--QLTEE-VLEAAEKLVAIGCFCIGTNQVDLDAAA 95 (409)
T ss_pred HHHCCCEEEEE--CCCCCCHHHHHHHHC------CCCEEEECCCC--CCCHH-HHHCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 99779977882--689999999999856------79899991798--73999-994399971999832157740899998
Q ss_pred HCCCCCCCCC-----CCHHHHHHHH----H-----------------HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 0477887567-----6679999999----9-----------------867877200128996164420346899998620
Q gi|254780506|r 132 IGDFTTGLVP-----CTPAGAILLI----E-----------------QFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRN 185 (306)
Q Consensus 132 ~~~~~~~~~P-----cTp~av~~ll----~-----------------~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~ 185 (306)
...-.-...| +++.-++.++ + .+.+.++.||++-|||-++ +|+-+|.++..-|
T Consensus 96 ~~GI~V~NtPg~Na~aVAEl~i~l~L~l~R~i~~~~~~~~~G~W~k~~~~~~El~GKtlGIIG~G~-IG~~VA~~a~~fG 174 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVLGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGH-IGTQLSVLAESLG 174 (409)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCH-HHHHHHHHHHHCC
T ss_conf 699489969997728899999999999986479999999829987567775563587898636754-7699999998769
Q ss_pred CCEEECCC----------CCCCHHHHHHHCCEEEEECCC----CCCCCCC---CCCCCCEEEEEEEEE
Q ss_conf 45331246----------765347764223573652244----3212201---047662699831111
Q gi|254780506|r 186 ATVTMAHS----------KTKNLPEICRTADILVVAVGR----PRMVQVD---WIKTGSLVIDVGINR 236 (306)
Q Consensus 186 atVti~hs----------~T~~l~~~~~~ADivIsAvG~----p~~i~~~---~vk~gavvIDvGi~~ 236 (306)
..|..... +-.++++..++||+|..-+.- .++|..+ +.|+|+++|+++=-.
T Consensus 175 m~Vi~yD~~~~~~~~~~~~~~sl~ell~~sD~IslH~Plt~~T~~lIn~~~l~~MK~ga~LIN~ARG~ 242 (409)
T PRK11790 175 MRVIFYDIEDKLPLGNATQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred CEEEEECCHHHCCCCCCEECCCHHHHHHHCCEEEECCCCCHHHHCCCCHHHHHHCCCCCEEEECCCCH
T ss_conf 98999786021256684674889999875999998267984663104399997269998999868851
No 74
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.13 E-value=0.1 Score=32.79 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=62.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCC---------CCCHHHHHHHHHHHCCCEEECCCC-----------CCCHHHHHHH
Q ss_conf 99999999867877200128996164---------420346899998620453312467-----------6534776422
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRS---------NLFGKPMGQLLLSRNATVTMAHSK-----------TKNLPEICRT 204 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs---------~~VG~Pla~lL~~~~atVti~hs~-----------T~~l~~~~~~ 204 (306)
.-+++.+..+. ..+.|++|.|+|-+ .--...+...|.++|+.|.+.... ..++.+.++.
T Consensus 298 ~~~~~~i~~~l-~~~~~~~I~ilGlafK~~tdD~R~Sps~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~ 376 (411)
T TIGR03026 298 DYVVEKILDLL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKG 376 (411)
T ss_pred HHHHHHHHHHH-HCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHC
T ss_conf 99999999866-31166613787411069998534582999999999788989999998998998127777999999846
Q ss_pred CCEEEEECCCCCCCCCCC--C---CCCCEEEEE
Q ss_conf 357365224432122010--4---766269983
Q gi|254780506|r 205 ADILVVAVGRPRMVQVDW--I---KTGSLVIDV 232 (306)
Q Consensus 205 ADivIsAvG~p~~i~~~~--v---k~gavvIDv 232 (306)
||++|.++..+.|-.-+| + ..+.+|+|.
T Consensus 377 aD~iii~t~h~ef~~ld~~~i~~~~~~~~i~D~ 409 (411)
T TIGR03026 377 ADALVILTDHDEFKDLDLEKIKDLMKGKVVVDT 409 (411)
T ss_pred CCEEEEECCCHHHHCCCHHHHHHHCCCCEEEEC
T ss_conf 988999559866723899999974699989939
No 75
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.02 Score=37.71 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=10.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 00128996164420346899998
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLL 182 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~ 182 (306)
.|.++.+.|. +|.|...++.
T Consensus 130 ~g~~~~~gGN---iG~p~~~~~~ 149 (438)
T PRK03806 130 AGVNVGVGGN---IGLPALMLLD 149 (438)
T ss_pred CCCCEEEEEC---CCCCHHHHHC
T ss_conf 5997567715---7752777513
No 76
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.03 E-value=0.041 Score=35.52 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=11.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHH
Q ss_conf 0012899616442034689999
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLL 181 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL 181 (306)
.|.++.+.|. +|.|+..+.
T Consensus 139 ~g~~~~~gGN---IG~p~l~l~ 157 (457)
T PRK01390 139 AGRDVQMGGN---IGTAILSLE 157 (457)
T ss_pred CCCCEEEECC---CCHHHCCCC
T ss_conf 3998699666---240111234
No 77
>PRK06046 alanine dehydrogenase; Validated
Probab=95.97 E-value=0.039 Score=35.71 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=49.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH-CCCEEECCCCCCCHHHHHHHCCEEEEECCCC-CCCCCCCCCCCCEEEEEEEEE
Q ss_conf 12899616442034689999862-0453312467653477642235736522443-212201047662699831111
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSR-NATVTMAHSKTKNLPEICRTADILVVAVGRP-RMVQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~-~atVti~hs~T~~l~~~~~~ADivIsAvG~p-~~i~~~~vk~gavvIDvGi~~ 236 (306)
+++.|.+|+.-=-.-++.-+..+ +..+..+ .+.++.. +||||++|+... -+++.+|+|||+.|+-+|.+.
T Consensus 155 ~~i~v~~r~~~~~~~fa~~~~~~~~~~v~~~----~~~~~~~-~aDiI~taT~s~~P~~~~~~l~pG~hi~~iG~~~ 226 (326)
T PRK06046 155 EEVRVYDRTKESCEKFISEMSDFVPCEIVYE----EDVEEAC-DCDILVTTTPSRKPVVKADWVKEGTHINAIGADA 226 (326)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEC----CCHHHHH-CCCEEEEEECCCCCEECCCCCCCCCEEEECCCCC
T ss_conf 7899991899999999999986559865973----9999982-7999999828998451443357871774126898
No 78
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.93 E-value=0.03 Score=36.52 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=11.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 00128996164420346899998
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLL 182 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~ 182 (306)
.|.++.+.|. +|.|+...+.
T Consensus 142 ~g~~~~~~GN---iG~p~~~~~~ 161 (487)
T PRK03369 142 AGRRSVLCGN---IGSPVLDVLD 161 (487)
T ss_pred CCCCEEEEEC---CCHHHHHHCC
T ss_conf 8998599813---6657664124
No 79
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.92 E-value=0.047 Score=35.14 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=53.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH-CCCEEECCCCCCCHHHHHHHCCEEEEECCCCC-CCCCCCCCCCCEEEEEEEE
Q ss_conf 12899616442034689999862-04533124676534776422357365224432-1220104766269983111
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSR-NATVTMAHSKTKNLPEICRTADILVVAVGRPR-MVQVDWIKTGSLVIDVGIN 235 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~-~atVti~hs~T~~l~~~~~~ADivIsAvG~p~-~i~~~~vk~gavvIDvGi~ 235 (306)
+++.|.+|+.-=-.-++..+.++ |.+|..|. ++++.++.||||++|+.-.. +++ +|++||+.|+-+|-+
T Consensus 153 ~~v~v~~r~~~~~~~f~~~~~~~~g~~v~~~~----~~~~av~~aDiV~taT~s~~Pv~~-~~l~~g~hi~aiGs~ 223 (325)
T PRK08618 153 EKVRVYSRTFEKAYAFAQEIQSKFNTEIYVVE----SADEAIEEADIIVTVTNAKTPVFS-EKLKKGVHINAVGSF 223 (325)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEC----CHHHHHHHCCEEEEECCCCCCCCC-CCCCCCEEECCCCCC
T ss_conf 68999947999999999999875099669958----999998439889992599986445-435887175132468
No 80
>PRK07232 malic enzyme; Reviewed
Probab=95.85 E-value=0.06 Score=34.40 Aligned_cols=167 Identities=20% Similarity=0.266 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHH-HCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCHH-HHHHHHHCCCCCCHHH
Q ss_conf 78999999999999-8397000024741112266999999852312212588834-6887113-7889860687435132
Q gi|254780506|r 45 ASCSYVSAKTRMAK-HCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQL-PLPSTVS-EQSIIQSIVPEKDVDG 121 (306)
Q Consensus 45 aS~~Yv~~K~K~a~-~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQl-PLP~~id-~~~i~~~I~p~KDVDG 121 (306)
+|.--.+.|.--.. -.||+..-+++.+. +.+++++.++.| .|+.-||=+.- --|+-+. ++++.+ +-|+-=
T Consensus 85 a~~pvmegk~~lfk~fa~id~~~i~~~~~-d~~~~i~~v~~~--~ptfgginledi~ap~cf~ie~~l~~----~~~ipv 157 (753)
T PRK07232 85 ASKPVMEGKGVLFKKFAGIDVFDIEVDEE-DPDKFIEAVAAL--EPTFGGINLEDIKAPECFYIEQKLRE----RMDIPV 157 (753)
T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHH--CCCCCEECHHHCCCCCHHHHHHHHHH----HCCCCE
T ss_conf 04762102567878764898443420889-989999999985--88866037988689732389999998----659982
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC---EEECCCCC---
Q ss_conf 155338887304778875676679999999986787720012899616442034689999862045---33124676---
Q gi|254780506|r 122 LHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT---VTMAHSKT--- 195 (306)
Q Consensus 122 l~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at---Vti~hs~T--- 195 (306)
||. | .-+-.=.+.+|.+--|+- .|-+++.-++|+.|.+- -|--.+.||..-|+. +++|.|+-
T Consensus 158 ~hd---------d-qhgtaiv~~a~l~nal~~-~~k~~~~~kiv~~GaGa-a~~a~~~ll~~~G~~~~ni~~~d~~Gvi~ 225 (753)
T PRK07232 158 FHD---------D-QHGTAIISAAALLNALEL-VGKKIEDVKIVVSGAGA-AAIACLNLLVALGAKKENIIVCDSKGVIY 225 (753)
T ss_pred ECC---------C-CCHHHHHHHHHHHHHHHH-HCCCHHHEEEEEECCCH-HHHHHHHHHHHCCCCHHCEEEEECCCCCC
T ss_conf 337---------7-651899999999999998-38646671899978868-88999999998499801079995778656
Q ss_pred --------------------CCHHHHHHHCCEEEEECCCCCCCCCCCCCC---CCEEEE
Q ss_conf --------------------534776422357365224432122010476---626998
Q gi|254780506|r 196 --------------------KNLPEICRTADILVVAVGRPRMVQVDWIKT---GSLVID 231 (306)
Q Consensus 196 --------------------~~l~~~~~~ADivIsAvG~p~~i~~~~vk~---gavvID 231 (306)
..|++.++.||++|. +-.|+.++++|+|. ..+|.-
T Consensus 226 ~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfig-~S~~~~~~~~mv~~Ma~~pivfa 283 (753)
T PRK07232 226 KGRTEGMDEWKAAYAQDTDARTLAEAIEGADVFLG-LSAAGVLTPEMVKSMADNPIIFA 283 (753)
T ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHCCCCEEEE-CCCCCCCCHHHHHHHCCCCEEEE
T ss_conf 88877624999986346898869999579978997-47799789999986287877985
No 81
>PRK12862 malic enzyme; Reviewed
Probab=95.82 E-value=0.066 Score=34.10 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHH-HCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCHH-HHHHHHHCCCCCCHHH
Q ss_conf 78999999999999-8397000024741112266999999852312212588834-6887113-7889860687435132
Q gi|254780506|r 45 ASCSYVSAKTRMAK-HCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQL-PLPSTVS-EQSIIQSIVPEKDVDG 121 (306)
Q Consensus 45 aS~~Yv~~K~K~a~-~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQl-PLP~~id-~~~i~~~I~p~KDVDG 121 (306)
+|.--.+.|.--.. -.||+..-+++.+ .+.+++++.++.| .|+.-||=+.- -=|+-+. ++++.+ +-|+-=
T Consensus 91 a~~pvmegk~~lfk~fa~id~~~i~~~~-~d~~~~i~~v~~~--~ptfgginledi~ap~cf~ie~~l~~----~~~ipv 163 (761)
T PRK12862 91 ASKPVMEGKAVLFKKFAGIDVFDIELDE-SDPDKLVEIIAAL--EPTFGGINLEDIKAPECFEVERKLRE----RMKIPV 163 (761)
T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEECCC-CCHHHHHHHHHHH--CCCCCEECHHHCCCCCHHHHHHHHHH----HCCCCE
T ss_conf 0476210256787876499835441188-9989999999985--88866027988689732389999998----559982
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC---EEECCCCC---
Q ss_conf 155338887304778875676679999999986787720012899616442034689999862045---33124676---
Q gi|254780506|r 122 LHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT---VTMAHSKT--- 195 (306)
Q Consensus 122 l~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at---Vti~hs~T--- 195 (306)
||. | .-+-.=.+.+|.+--|+- .|-+++.-++|+.|.+- -|--.+.||..-|+. +++|.|+-
T Consensus 164 ~hd---------d-qhgtaiv~~a~l~nal~~-~~k~~~~~kiv~~GaGa-a~~a~~~ll~~~G~~~~ni~~~D~~Gvi~ 231 (761)
T PRK12862 164 FHD---------D-QHGTAIIVAAAVLNGLKV-VGKDIEDVKLVASGAGA-AALACLDLLVSLGVKRENIWVTDIKGVVY 231 (761)
T ss_pred ECC---------C-CCHHHHHHHHHHHHHHHH-HCCCHHHEEEEEECCCH-HHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 337---------7-651899999999999998-48856671899978878-89999999998399810179994678777
Q ss_pred --------------------CCHHHHHHHCCEEEEECCCCCCCCCCCCCC---CCEEEEE
Q ss_conf --------------------534776422357365224432122010476---6269983
Q gi|254780506|r 196 --------------------KNLPEICRTADILVVAVGRPRMVQVDWIKT---GSLVIDV 232 (306)
Q Consensus 196 --------------------~~l~~~~~~ADivIsAvG~p~~i~~~~vk~---gavvIDv 232 (306)
..|++-++.||++|.-- .|+.++++|++. +.+|.-.
T Consensus 232 ~~r~~~~~~~k~~~a~~t~~~~l~ea~~gADvfig~S-~~~~~~~e~v~~Ma~~pivfal 290 (761)
T PRK12862 232 EGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-AAGVLKPEMVKKMAPRPLILAL 290 (761)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECC-CCCCCCHHHHHHHCCCCEEEEC
T ss_conf 8877430799999965079665999966898899806-8999999999852737778625
No 82
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.74 E-value=0.11 Score=32.63 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHH-HHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC-CCCCHHHHHHHHHCCCCCCHHHC
Q ss_conf 7899999999999-983970000247411122669999998523122125888346-88711378898606874351321
Q gi|254780506|r 45 ASCSYVSAKTRMA-KHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLP-LPSTVSEQSIIQSIVPEKDVDGL 122 (306)
Q Consensus 45 aS~~Yv~~K~K~a-~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlP-LP~~id~~~i~~~I~p~KDVDGl 122 (306)
++.--...|.--. .-.||++--+.+... +.+++.+.|+.+ .+..-||.++-= .|+- .++.....-+.|+=-|
T Consensus 98 ag~pVmeGKa~Lfk~faGid~~pI~ld~~-~~~ei~~~Vkal--~p~FgginLedi~ap~c---f~ie~~lr~~~~IPvF 171 (432)
T COG0281 98 AGKPVMEGKAVLFKAFAGIDVLPIELDVG-TNNEIIEFVKAL--EPTFGGINLEDIDAPRC---FAIEERLRYRMNIPVF 171 (432)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHH--HHCCCCCCEEECCCCHH---HHHHHHHHHCCCCCCC
T ss_conf 37511252899998734997122676379-828999999973--11379822455556335---7899998634789834
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CEEECCCCC----
Q ss_conf 5533888730477887567667999999998678772001289961644203468999986204---533124676----
Q gi|254780506|r 123 HVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA---TVTMAHSKT---- 195 (306)
Q Consensus 123 ~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a---tVti~hs~T---- 195 (306)
|.- ..+-.--|.+|++--|+.. |-+++..++|+.|.+- -|--.+.+|...+. .+++|.|+-
T Consensus 172 hDD----------qqGTaiv~lA~llnalk~~-gk~l~d~kiv~~GAGA-Agiaia~~l~~~g~~~~~i~~~D~~G~l~~ 239 (432)
T COG0281 172 HDD----------QQGTAIVTLAALLNALKLT-GKKLKDQKIVINGAGA-AGIAIADLLVAAGVKEENIFVVDRKGLLYD 239 (432)
T ss_pred CCC----------CCHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 545----------3279999999999999984-9972203899967758-899999999982898445899816763458
Q ss_pred --C----CH---------------HHHHHHCCEEEEECCCCCCCCCCCCCCC
Q ss_conf --5----34---------------7764223573652244321220104766
Q gi|254780506|r 196 --K----NL---------------PEICRTADILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 196 --~----~l---------------~~~~~~ADivIsAvG~p~~i~~~~vk~g 226 (306)
. +. .+....|||+|..-|. +.++++|||.-
T Consensus 240 ~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~-G~~t~e~V~~M 290 (432)
T COG0281 240 GREDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGV-GAFTEEMVKEM 290 (432)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCC-CCCCHHHHHHH
T ss_conf 8643442146788777651455511213689889976778-87699999975
No 83
>PRK04965 nitric oxide reductase; Provisional
Probab=95.71 E-value=0.048 Score=35.10 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 00128996164420346899998620453312467
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
.+|+++|||-+- +|--+|.-|..+|..||+.|..
T Consensus 140 ~~krvvVIGgG~-IG~E~A~~L~~~G~~Vtvve~~ 173 (378)
T PRK04965 140 DAQRVLVVGGGL-IGTELAMDLCRAGKAVTLVDNA 173 (378)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCC
T ss_conf 497899989838-8999999999679889997666
No 84
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.67 E-value=0.032 Score=36.26 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHH-----CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHH---------------
Q ss_conf 676679999999986-----787720012899616442034689999862045331246765347---------------
Q gi|254780506|r 140 VPCTPAGAILLIEQF-----KGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLP--------------- 199 (306)
Q Consensus 140 ~PcTp~av~~ll~~y-----~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~--------------- 199 (306)
-|.|+.|++.-++.. .+.+++||+|+|-|-++ ||.-+|.+|.+.||.|+++..+...+.
T Consensus 2 s~~Ta~GV~~~~~~~~~~~~g~~~l~gk~VaIqG~Gn-VG~~~A~~l~~~Gakvvv~d~~~~~~~~~~~~~~~~~~~~~~ 80 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK-VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEE 80 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEECCHH
T ss_conf 9813899999999999983099987899999989879-999999999967997999826889999998568988937332
Q ss_pred HHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 7642235736522443212201047
Q gi|254780506|r 200 EICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 200 ~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
-+...+||++-|.-. +.|+.+.+.
T Consensus 81 ~~~~~~DIl~PcA~~-~~i~~~~a~ 104 (200)
T cd01075 81 IYSVDADVFAPCALG-GVINDDTIP 104 (200)
T ss_pred HHCCCCCEEEECCCC-CCCCHHHHH
T ss_conf 322777688651411-546899998
No 85
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.62 E-value=0.043 Score=35.44 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=60.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC-CCHHHHHHHCCEEEEECCCCCC------CCCCCCCCCCEEEEE
Q ss_conf 001289961644203468999986204533124676-5347764223573652244321------220104766269983
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT-KNLPEICRTADILVVAVGRPRM------VQVDWIKTGSLVIDV 232 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T-~~l~~~~~~ADivIsAvG~p~~------i~~~~vk~gavvIDv 232 (306)
..++|+|||-..-.|+=++.+|...|..|.+...++ .+.++...+||+||.+|.--.- + -++++++++.|+
T Consensus 97 ~~~~i~IIGG~G~mG~~F~~~f~~sGy~V~ild~~dw~~~~~~~~~advViVsVPI~~T~~VI~~l--~~l~~~~lL~Di 174 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEKDDWDRADDILADAGMVIVSVPIHLTEEVIEKL--PPLPEDCILVDL 174 (374)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHC--CCCCCCCEEEEC
T ss_conf 987179980798277999999996798799616444534898871799899981458899999857--789998689861
Q ss_pred EE
Q ss_conf 11
Q gi|254780506|r 233 GI 234 (306)
Q Consensus 233 Gi 234 (306)
.-
T Consensus 175 TS 176 (374)
T PRK11199 175 TS 176 (374)
T ss_pred HH
T ss_conf 00
No 86
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.60 E-value=0.028 Score=36.74 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=67.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-CCCH-----------------HHHHHHCCEEEEECCCCCC-
Q ss_conf 77200128996164420346899998620453312467-6534-----------------7764223573652244321-
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-TKNL-----------------PEICRTADILVVAVGRPRM- 217 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-T~~l-----------------~~~~~~ADivIsAvG~p~~- 217 (306)
++++||+|+|||-|. |+.-=+..|++.||.||+.... +..+ .+.+..+++||+|++-+..
T Consensus 6 l~l~gk~vLVVGGG~-vA~rK~~~Ll~~gA~VtVvsp~~~~el~~l~~~~~i~~~~~~~~~~dl~~~~lViaAT~d~~~N 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGK-VAGRRAITLLKYGAHITVISPEITENLVKLVEEGKIRWKEKEFEPSDIVDAFLVIAATNDPRVN 84 (202)
T ss_pred EECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCHHHH
T ss_conf 982898699988989-9999999998689969998699998999999769944761678866751670445527989999
Q ss_pred --CCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCC-HHHHH---HCCEECCCCCCCCHHHHHHHHHH
Q ss_conf --22010476626998311111267668856841775-67873---14400898698686899999999
Q gi|254780506|r 218 --VQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVA-DECKS---VVGAITPVPGGVGPMTIAMLMAN 280 (306)
Q Consensus 218 --i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd-~~~~~---~a~~iTPVPGGVGp~Tva~L~~N 280 (306)
+. ..-++|.. + |..++++.+ |+- +++.. ..-+|+ -||-.|.....+=+.
T Consensus 85 ~~i~-~~~~~~~l-v----NvvD~p~~~------dFi~Paiv~rg~l~IaIS--T~G~SP~lAr~iR~~ 139 (202)
T PRK06718 85 EAVA-EALPENAL-F----NVIGDAESG------NVVFPSALHRGKLTISVS--TDGASPKLAKKIRDE 139 (202)
T ss_pred HHHH-HHHHHCCC-E----EECCCCCCC------EEEEEEEEEECCEEEEEE--CCCCCHHHHHHHHHH
T ss_conf 9999-98654487-5----755786548------278742785299899998--899783999999999
No 87
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.52 E-value=0.032 Score=36.31 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=53.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC------------------CCH-HHHHHHCCEEEEECCCCCC----
Q ss_conf 01289961644203468999986204533124676------------------534-7764223573652244321----
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT------------------KNL-PEICRTADILVVAVGRPRM---- 217 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T------------------~~l-~~~~~~ADivIsAvG~p~~---- 217 (306)
-++++|+|.+. .|+-++..|..+|.-|.++-..- .+. .+....||+||.||.....
T Consensus 3 ~~~v~IvG~Gl-iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aDlVivavPi~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGL-MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL 81 (279)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf 64899987746-77999999997698479972477467787766358530100115554135699899957788999999
Q ss_pred --CCCCCCCCCCEEEEEEEEE
Q ss_conf --2201047662699831111
Q gi|254780506|r 218 --VQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 218 --i~~~~vk~gavvIDvGi~~ 236 (306)
+.+ .+|+|++|.|+|-.+
T Consensus 82 ~~l~~-~l~~g~iv~Dv~S~K 101 (279)
T COG0287 82 KELAP-HLKKGAIVTDVGSVK 101 (279)
T ss_pred HHHCC-CCCCCCEEECCCCHH
T ss_conf 98630-379998897364201
No 88
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.49 E-value=0.028 Score=36.67 Aligned_cols=81 Identities=25% Similarity=0.298 Sum_probs=49.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHH----HCCEEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 877200128996164420346899998620453312467653477642----2357365224432122010476626998
Q gi|254780506|r 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICR----TADILVVAVGRPRMVQVDWIKTGSLVID 231 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~----~ADivIsAvG~p~~i~~~~vk~gavvID 231 (306)
...++||+|.|-|.|...|+-|...|.++||.|.-.-+..+.+.-... .-..|-=.+|+-..+++.--|=.-.+++
T Consensus 175 alSLKGKTV~VTGASG~LG~aL~k~l~~~GAKVIalTs~~~~i~~~~~~~~~~~~~i~W~~G~E~~L~~~L~kiDILILN 254 (410)
T PRK07424 175 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVIALTSNSDKIPLEINGEDLPVKTIHWQVGQEAALAELLEKVDILVIN 254 (410)
T ss_pred EEECCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEEC
T ss_conf 13016867999547737789999999977998999935898655344665467127864328888988888646899884
Q ss_pred EEEEE
Q ss_conf 31111
Q gi|254780506|r 232 VGINR 236 (306)
Q Consensus 232 vGi~~ 236 (306)
-|||+
T Consensus 255 HGIN~ 259 (410)
T PRK07424 255 HGINV 259 (410)
T ss_pred CCCCC
T ss_conf 88785
No 89
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.44 E-value=0.035 Score=36.04 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=6.5
Q ss_pred EEEEECCCCCCHH
Q ss_conf 5888346887113
Q gi|254780506|r 93 GILVQLPLPSTVS 105 (306)
Q Consensus 93 GIlvQlPLP~~id 105 (306)
=|++.+|=++.++
T Consensus 62 vI~l~lp~~~~Vd 74 (301)
T PRK09599 62 VVWLMVPAGEITD 74 (301)
T ss_pred EEEEECCCCHHHH
T ss_conf 7999817970389
No 90
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.44 E-value=0.035 Score=36.05 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=45.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-CCCH--------------HHHHHHCCEEEEECCCCCC
Q ss_conf 77200128996164420346899998620453312467-6534--------------7764223573652244321
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-TKNL--------------PEICRTADILVVAVGRPRM 217 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-T~~l--------------~~~~~~ADivIsAvG~p~~ 217 (306)
++++||+|+|||-|. |+..=+..|++.||.||+.-.. +.++ ++.+..+++||+|+.-+.+
T Consensus 9 l~l~~k~vLVvGGG~-VA~rK~~~Ll~~ga~VtVvsp~~~~el~~l~~i~~~~r~~~~~dl~~~~lViaATdd~~l 83 (157)
T PRK06719 9 FNLHNKVVVIIGGGK-IAYRKASGLKDTGAFVTVVSPEICEEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAV 83 (157)
T ss_pred EECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCEEEECCCCCHHHHCCCEEEEECCCCHHH
T ss_conf 975998799988989-999999999878796999999868999845570887046784683784399986899899
No 91
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=95.39 E-value=0.074 Score=33.78 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=87.6
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECC-----CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH---
Q ss_conf 99967986789999999999998397000024-----7411122669999998523122125888346887113788---
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYN-----FPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQS--- 108 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~-----l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~--- 108 (306)
++++=+.++.++=+.. +-++..+|....... +...-|-++-...+.+ =+|||++---.-.+.....
T Consensus 62 ~~~IFeK~STRTR~SF-Eva~~~LGg~~~yL~p~~~QlG~gEsi~DTArVLsR-----~~D~I~~R~~~~~g~g~~~~~e 135 (395)
T PRK07200 62 GISVFRDNSTRTRFSY-ASALNLLGLAQQDLDEGKSQIAHGETVRETANMISF-----CADAIGIRDDMYLGAGNAYMRE 135 (395)
T ss_pred EEEEEECCCCHHHHHH-HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHH-----HHHEEEEEECCCCCCCHHHHHH
T ss_conf 8999706983468999-999997799769738987627799888999999985-----5025887303334541489999
Q ss_pred HHHHCC-CCC--CHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCC-CCCCCEEEEE-------CCCCCCHHH
Q ss_conf 986068-743--51321553388873047788756766799-99999986787-7200128996-------164420346
Q gi|254780506|r 109 IIQSIV-PEK--DVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGC-DLSGQHAVVI-------GRSNLFGKP 176 (306)
Q Consensus 109 i~~~I~-p~K--DVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i-~l~Gk~vvVv-------Grs~~VG~P 176 (306)
+.+... +-+ -+....| ..+..++.+.||-.+| .+.+.||+..+ .++|++++++ |.+..| +
T Consensus 136 ~a~~~~~~~~~~~vp~~~p------ViN~LTD~~HPtQ~LADllTi~E~~G~l~~lkg~k~~~~~~y~~~~g~~~nv--~ 207 (395)
T PRK07200 136 VGAALDDGYKQGVLPQRPA------LVNLQCDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSV--P 207 (395)
T ss_pred HHHHHHHHHHHCCCCCCCC------EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHH--H
T ss_conf 9999988887346765551------2325555778589999999999981873245786389997414667742268--9
Q ss_pred HHHHH--HHHCCCEEECCCC-------------------------CCCHHHHHHHCCEEEEECC
Q ss_conf 89999--8620453312467-------------------------6534776422357365224
Q gi|254780506|r 177 MGQLL--LSRNATVTMAHSK-------------------------TKNLPEICRTADILVVAVG 213 (306)
Q Consensus 177 la~lL--~~~~atVti~hs~-------------------------T~~l~~~~~~ADivIsAvG 213 (306)
-+.|+ ..-|..|++|+.+ |.|+.+-++.||+|.+-+=
T Consensus 208 ~sl~~~~a~lGmdv~ia~P~gy~p~~~~v~~A~~~A~~sG~~i~iT~D~~eAv~gADvIYTDvW 271 (395)
T PRK07200 208 QGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKSW 271 (395)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCEEECCCC
T ss_conf 9999999774974999789877989899999999999839989996799999579999972787
No 92
>PRK08655 prephenate dehydrogenase; Provisional
Probab=95.36 E-value=0.045 Score=35.28 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=13.9
Q ss_pred CCCCEEEEE---CCCCCCHHHHHHHHHHHCCCEEEC
Q ss_conf 200128996---164420346899998620453312
Q gi|254780506|r 159 LSGQHAVVI---GRSNLFGKPMGQLLLSRNATVTMA 191 (306)
Q Consensus 159 l~Gk~vvVv---Grs~~VG~Pla~lL~~~~atVti~ 191 (306)
+.|.+|+++ ||+.--=.=+..+|...||.|+.+
T Consensus 126 l~gQvVVvcP~~~~~~~~~~~l~~~l~~~Ga~v~~~ 161 (441)
T PRK08655 126 LRGQVVILTPTEKRSNPWFPKVRNFLEEEGARVIIT 161 (441)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 578889996389877177999999999779889994
No 93
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.34 E-value=0.046 Score=35.23 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=56.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC---------------CCHHHHHHHCCEEEEECCCCCCCC--------
Q ss_conf 289961644203468999986204533124676---------------534776422357365224432122--------
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT---------------KNLPEICRTADILVVAVGRPRMVQ-------- 219 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T---------------~~l~~~~~~ADivIsAvG~p~~i~-------- 219 (306)
+|..||-+. .|.|+|.=|.+.|..|++.++.- .+..+.++.||+||+.++-+.-+.
T Consensus 2 kIafIGLG~-MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 2 KIAFIGLGI-MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred EEEEECCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEECCCHHHHHHHCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 079985735-2599999999779878998088566568999729800388999996199899961798999999818533
Q ss_pred -CCCCCCCCEEEEEEEE
Q ss_conf -0104766269983111
Q gi|254780506|r 220 -VDWIKTGSLVIDVGIN 235 (306)
Q Consensus 220 -~~~vk~gavvIDvGi~ 235 (306)
.++.|+|+++||..+.
T Consensus 81 ~~~~~~~G~i~IDmSTi 97 (286)
T COG2084 81 LLEGLKPGAIVIDMSTI 97 (286)
T ss_pred HHHCCCCCCEEEECCCC
T ss_conf 53337899789987899
No 94
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.33 E-value=0.14 Score=31.79 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=66.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCEEECCCCCC-------C--HHHHHHHCCEEEEECCC
Q ss_conf 99999999867877200128996164420346899998620-45331246765-------3--47764223573652244
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRN-ATVTMAHSKTK-------N--LPEICRTADILVVAVGR 214 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~-atVti~hs~T~-------~--l~~~~~~ADivIsAvG~ 214 (306)
.++...++.+ .+++++++++||.|. .|+-.+..|.++| ..+++|++..- . ...+-...|++|++++-
T Consensus 160 ~~~~~~~~~~--~~~~~~~vLvIGaGe-m~~l~~k~L~~~g~~~i~v~NR~~~~~~~~~~~~~~~~~~~~~diii~~ts~ 236 (338)
T PRK00676 160 SVVQEELRRR--QKSKKASLLFIGYSE-INRKVAYYLQRQGYSRITFCSRQQLPTPYRTVVREELSFRDPYDVIFFGSSE 236 (338)
T ss_pred HHHHHHHHHH--CCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 9999999863--786788699986629-9999999998769997999886566665478878775024657889996788
Q ss_pred CCCCCC-CCC-----CCCCEEEEEEEEECCCCC--CCCCEEECCCCH
Q ss_conf 321220-104-----766269983111112676--688568417756
Q gi|254780506|r 215 PRMVQV-DWI-----KTGSLVIDVGINRINSPQ--LGKTVLVGDVAD 253 (306)
Q Consensus 215 p~~i~~-~~v-----k~gavvIDvGi~~~~~~~--~~~~~~~GDvd~ 253 (306)
+...-+ ..+ +++-.+||.++-|.-... .-+..+. |+|+
T Consensus 237 ~~~~~~~~~~e~~~~~~~rliiDLAVPRDI~~~~~~~~~~~l-~IDD 282 (338)
T PRK00676 237 SAYAFPHLSWESLASIPDRIVFDFNVPRTFPWSETPFGHRYL-DMDF 282 (338)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHCCCCCEEE-EHHH
T ss_conf 654565678999871569879995079998710257798998-5886
No 95
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.28 E-value=0.051 Score=34.88 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=14.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0012899616442034689999862
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSR 184 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~ 184 (306)
.|+++.+.|. +|.|+..++...
T Consensus 137 ~g~~~~~~GN---iG~p~~~~~~~~ 158 (450)
T PRK02472 137 GGQHGLLAGN---IGYPASEVAQKA 158 (450)
T ss_pred CCCCEEEEEE---CCCCCHHHHHCC
T ss_conf 4997399941---676412455447
No 96
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.25 E-value=0.044 Score=35.35 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=12.6
Q ss_pred EEEECCCCCCCCCCCCCCCC
Q ss_conf 36522443212201047662
Q gi|254780506|r 208 LVVAVGRPRMVQVDWIKTGS 227 (306)
Q Consensus 208 vIsAvG~p~~i~~~~vk~ga 227 (306)
|+-|+|.-..+...+++||.
T Consensus 239 V~~a~~~d~rig~~~~~PG~ 258 (411)
T TIGR03026 239 VIEAAGTDPRIGFNFLNPGP 258 (411)
T ss_pred HHHHHCCCCCCCCCCCCCCC
T ss_conf 99761789987777889979
No 97
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.15 E-value=0.069 Score=33.98 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=41.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-CCCHHHHHH-----------------HCCEEEEECCCCCC
Q ss_conf 77200128996164420346899998620453312467-653477642-----------------23573652244321
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-TKNLPEICR-----------------TADILVVAVGRPRM 217 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-T~~l~~~~~-----------------~ADivIsAvG~p~~ 217 (306)
++++||+|+|||.|. ||.==+.+|.+.||.|++.-.. ++.+..... .++++|.|++-+.+
T Consensus 8 ~~l~~k~VlvvGgG~-va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~l 85 (210)
T COG1648 8 LDLEGKKVLVVGGGS-VALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEEL 85 (210)
T ss_pred EECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCCHHHHCCCEEEEEECCCHHH
T ss_conf 981997799989989-999999999746997999878744999999983485310022363653682499991699899
No 98
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.059 Score=34.47 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=15.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH-HCCCEEE
Q ss_conf 001289961644203468999986-2045331
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLS-RNATVTM 190 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~-~~atVti 190 (306)
.|.++.+.|. +|.|+...+.. .+..+.+
T Consensus 142 ~g~~~~~gGN---iG~p~~~~~~~~~~~d~~V 170 (458)
T PRK01710 142 EGYKTWVGGN---IGTPLFSNIEEIKEEDKVV 170 (458)
T ss_pred CCCCEEEECC---CCCHHHHHHHHCCCCCEEE
T ss_conf 4997585166---2644688885057886699
No 99
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.11 E-value=0.36 Score=29.02 Aligned_cols=193 Identities=17% Similarity=0.192 Sum_probs=109.5
Q ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEE----EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC---
Q ss_conf 96500538999999999999999999836999759----99996798678999999999999839700002474111---
Q gi|254780506|r 1 MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGL----AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI--- 73 (306)
Q Consensus 1 Ma~iLdGk~iA~~i~~~lk~~i~~l~~~~g~~P~L----avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~--- 73 (306)
|-.+|+-+.+..+=-..|-+....+++. ...+.| ...++ ..|..++- -+=+-++.++|-.+..+.-..+.
T Consensus 3 mkhllsi~dls~~ei~~ll~~A~~~k~~-~~~~~L~gk~v~~lF-~epSTRTR-~SFE~A~~rLGg~~i~l~~~~ss~~~ 79 (335)
T PRK04523 3 LKHFLNTQDWSRAELDALLTQAAAFKRN-KLGHALKGKSIALVF-FNPSLRTR-TSFELGAFQLGGHAIVLQPGKDAWPI 79 (335)
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEE-CCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 5541761118999999999999999708-998778999899997-37983049-99999999869988984687764322
Q ss_pred -----------CHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-----HHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCC
Q ss_conf -----------2266999999852312212588834688711-----378898606874351321553388873047788
Q gi|254780506|r 74 -----------SQIDLENAVLSLNKDDSIHGILVQLPLPSTV-----SEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTT 137 (306)
Q Consensus 74 -----------se~el~~~I~~LN~d~~V~GIlvQlPLP~~i-----d~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~ 137 (306)
+.+.+.+.++-|+.= +|+|++-.+- .+- ..+.+++.+...-+| --.|+ | +
T Consensus 80 ~~~~g~~~~~~~~Esl~Dt~~vls~y--~D~iviR~~~-~~~~~~~~~~~~~~~~~a~~s~v---PVIN~-----g---~ 145 (335)
T PRK04523 80 EFNLGTVMDGDTEEHIAEVARVLSRY--VDLIGVRAFP-KFVDWEEDRQDPVLNSFAKYSTV---PVINM-----E---T 145 (335)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEECCC-CCCCCHHHHHHHHHHHHHHHCCC---CEECC-----C---C
T ss_conf 24555322577776699999999843--9899993253-23420000136899999986688---73068-----8---8
Q ss_pred CCCCCCHHH-HHHHHHHHCCCCCCCCEEEEEC--CCC----CCHHHHHHHHHHHCCCEEECCCCC---------------
Q ss_conf 756766799-9999998678772001289961--644----203468999986204533124676---------------
Q gi|254780506|r 138 GLVPCTPAG-AILLIEQFKGCDLSGQHAVVIG--RSN----LFGKPMGQLLLSRNATVTMAHSKT--------------- 195 (306)
Q Consensus 138 ~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvG--rs~----~VG~Pla~lL~~~~atVti~hs~T--------------- 195 (306)
+..||-+++ .+.+.+++ |-.+.|+++++++ .++ .|.+-+..++..-|+.|++|....
T Consensus 146 ~~HPtQaL~Dl~Ti~e~~-g~~~~~~~~~i~~~~~~~~~~~~va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~ 224 (335)
T PRK04523 146 ITHPCQELAHALALQEHF-GTPLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAEQN 224 (335)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 888489999999999983-8633698799998514774414698999999997499089981785467998999999999
Q ss_pred -----------CCHHHHHHHCCEEEEE
Q ss_conf -----------5347764223573652
Q gi|254780506|r 196 -----------KNLPEICRTADILVVA 211 (306)
Q Consensus 196 -----------~~l~~~~~~ADivIsA 211 (306)
.|+++.++.||+|.+-
T Consensus 225 ~~~~g~~v~~~~d~~~al~~aDvvyt~ 251 (335)
T PRK04523 225 AAESGGSVQVSHDIDSAYAGADVVYAK 251 (335)
T ss_pred HHHCCCEEEEECCHHHHHHCCCHHHHH
T ss_conf 997298599981899997323246666
No 100
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.09 E-value=0.1 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=13.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2001289961644203468999986
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLS 183 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~ 183 (306)
-.|+++.+.| .+|.|+...|..
T Consensus 146 ~~g~~~~~~G---NIG~p~l~~l~~ 167 (501)
T PRK02006 146 RAGKKVAVAG---NISPAALDKLAE 167 (501)
T ss_pred HCCCCEEEEC---CCCCHHHHHHHH
T ss_conf 7699746525---646102677876
No 101
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.09 E-value=0.097 Score=32.95 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=12.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 001289961644203468999986
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLS 183 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~ 183 (306)
.|.++.+.|. +|.|+...+..
T Consensus 135 ~g~~~~~~GN---iG~p~~~~~~~ 155 (445)
T PRK04308 135 CGLDTVIAGN---IGTPVLEAELQ 155 (445)
T ss_pred CCCCEEEEEE---CCCCCHHHHHH
T ss_conf 5996299850---37521111444
No 102
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=95.06 E-value=0.056 Score=34.61 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=52.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCC----------------------------CCCCHHHHHHHCCEEEEECC
Q ss_conf 12899616442034689999862045331246----------------------------76534776422357365224
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS----------------------------KTKNLPEICRTADILVVAVG 213 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs----------------------------~T~~l~~~~~~ADivIsAvG 213 (306)
|++.|+|.+. .|.-||..|.+.|..|++..+ -|.|+++.++.||++|.|+.
T Consensus 1 kKI~IiGaG~-wGtAla~~la~n~~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiavp 79 (159)
T pfam01210 1 KKIAVLGAGS-WGTALAKVLARNGHEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAVP 79 (159)
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEECC
T ss_conf 9899999699-999999999987998999990436667788669782104786455530542889999837989999174
Q ss_pred CCCCCC-----CCCCCCCCEEEEE
Q ss_conf 432122-----0104766269983
Q gi|254780506|r 214 RPRMVQ-----VDWIKTGSLVIDV 232 (306)
Q Consensus 214 ~p~~i~-----~~~vk~gavvIDv 232 (306)
-.++-. .++++++..+|-+
T Consensus 80 s~~~~~~~~~i~~~~~~~~~iv~~ 103 (159)
T pfam01210 80 SQALREVLKQLKGLLSPGAILVSL 103 (159)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 889999999998655765568887
No 103
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.06 E-value=0.076 Score=33.67 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=51.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 1289961644203468999986204533124676534776422357365224432122010476626998311111
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRI 237 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~ 237 (306)
++|.|.+|+.-=-.-++.-+...+..+.. .+.++.+++||||++|+.-..-+-++|+++|+.|.-+|-+.-
T Consensus 151 ~~V~v~~r~~~~a~~~~~~~~~~~~~~~~-----~~~e~av~~aDiI~taT~S~~Pv~~~~~~~g~hI~aiGs~~p 221 (304)
T PRK07340 151 RRVWVRGRTAASAAAFCAAARALGPTLEP-----LDGDAIPPAVDVVVTVTTSRTPVYPEAARAGRLVVGVGAFTP 221 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEE-----CCHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 48999879989999999998600991797-----689999842898999418997644655799818941378999
No 104
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.00 E-value=0.048 Score=35.05 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=12.6
Q ss_pred CCCCEEEEECCCCC---CHHHHHHHHHHHCCCEEEC
Q ss_conf 20012899616442---0346899998620453312
Q gi|254780506|r 159 LSGQHAVVIGRSNL---FGKPMGQLLLSRNATVTMA 191 (306)
Q Consensus 159 l~Gk~vvVvGrs~~---VG~Pla~lL~~~~atVti~ 191 (306)
++|+..++.-.... .-.-+..|+..-||+|...
T Consensus 135 F~~a~~iltP~~~t~~~~~~~v~~l~~~lGa~~~~m 170 (357)
T PRK06545 135 FENAPWVLTPDDHVDPEAVAELKDLLSGTGAKFVVM 170 (357)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 669819996389999999999999999759989981
No 105
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.00 E-value=0.047 Score=35.16 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHCCC------CCCCCEEEEECCCCCCH---HHHHHHHHHHCCCEEECC
Q ss_conf 75676679999999986787------72001289961644203---468999986204533124
Q gi|254780506|r 138 GLVPCTPAGAILLIEQFKGC------DLSGQHAVVIGRSNLFG---KPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 138 ~~~PcTp~av~~ll~~y~~i------~l~Gk~vvVvGrs~~VG---~Pla~lL~~~~atVti~h 192 (306)
.|+|+-|.|=-+ ..|+ -++|+.+++.-....-- .-+..|+..-||.+....
T Consensus 119 ~FVg~HPmAGsE----~sG~~~A~~~LF~~~~~iltp~~~~~~~~~~~v~~lw~~lGa~v~~m~ 178 (307)
T PRK07502 119 HFIPGHPLAGTE----HSGPDAGFAELFENRWCILTPPEGTDPAAVARLRAFWRALGARVEEMD 178 (307)
T ss_pred CEECCCCCCCCC----CCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 367268876788----755101001474387089967999999999999999996398799946
No 106
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=94.99 E-value=0.046 Score=35.18 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECC
Q ss_conf 1289961644203468999986204533124
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~h 192 (306)
.+++|+|-|. ||-|+|..|.++|..|+...
T Consensus 1 MkI~ViGlGy-VGl~~a~~la~~G~~V~g~D 30 (185)
T pfam03721 1 MRIAVIGLGY-VGLPTAVCLAEIGHDVVGVD 30 (185)
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCEEEEEE
T ss_conf 9799989787-48999999994899399997
No 107
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.097 Score=32.96 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=18.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-CCCEEE
Q ss_conf 720012899616442034689999862-045331
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSR-NATVTM 190 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~-~atVti 190 (306)
.-.|.++.++|. +|.|+...+... ...+.+
T Consensus 146 ~~~g~~~~~~GN---IG~p~~~~l~~~~~~d~~V 176 (476)
T PRK00141 146 QAGGFAAVAVGN---IGIPVSAALVAQNRIDVLV 176 (476)
T ss_pred HHCCCCCEEEEE---CCCHHHHHHHCCCCCCEEE
T ss_conf 837997289950---6724666652578775899
No 108
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.86 E-value=0.086 Score=33.33 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=55.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCCCCHHHHHHHCCEEEEECC-CCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 0012899616442034689999862045-33124676534776422357365224-4321220104766269983111
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKTKNLPEICRTADILVVAVG-RPRMVQVDWIKTGSLVIDVGIN 235 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T~~l~~~~~~ADivIsAvG-~p~~i~~~~vk~gavvIDvGi~ 235 (306)
...++.|-+|+.---.-++..|.+++.- |.-| .+.++.++.||||++++- +.-+++.+|++||+-|.-+|-+
T Consensus 154 ~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~----~s~~~av~~aDiIvt~T~s~~Pil~~~~l~~G~hI~aiGad 227 (330)
T COG2423 154 DIREIRVYSRDPEAAEAFAARLRKRGGEAVGAA----DSAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGAD 227 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEC----CCHHHHHHCCCEEEEECCCCCCEECHHHCCCCCEEEECCCC
T ss_conf 961899976898999999999876338651323----68998861399899942899876238665897089703789
No 109
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.84 E-value=0.07 Score=33.95 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=55.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCC-----------------HHHHHHHCCEEEEECCCCCCCC-----
Q ss_conf 128996164420346899998620453312467653-----------------4776422357365224432122-----
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKN-----------------LPEICRTADILVVAVGRPRMVQ----- 219 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~-----------------l~~~~~~ADivIsAvG~p~~i~----- 219 (306)
+.+.|+|.++ +|.-||..|...|..|++..|+.+. .++-++.||||+.|+.-..+..
T Consensus 2 ~~~~i~GtGn-iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l 80 (211)
T COG2085 2 MIIAIIGTGN-IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL 80 (211)
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 1799962571-878999999967973999647880678899986456533477688884399899954578777699999
Q ss_pred CCCCCCCCEEEEEEE
Q ss_conf 010476626998311
Q gi|254780506|r 220 VDWIKTGSLVIDVGI 234 (306)
Q Consensus 220 ~~~vk~gavvIDvGi 234 (306)
.++.. |.+|||+.-
T Consensus 81 ~~~~~-~KIvID~tn 94 (211)
T COG2085 81 RDALG-GKIVIDATN 94 (211)
T ss_pred HHHHC-CEEEEECCC
T ss_conf 98709-909996688
No 110
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.79 E-value=0.43 Score=28.45 Aligned_cols=150 Identities=20% Similarity=0.220 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC---HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 986789999999999998397000024741112---26699999985231221258883468871137889860687435
Q gi|254780506|r 42 NDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS---QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKD 118 (306)
Q Consensus 42 ddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s---e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KD 118 (306)
..|..++-+..- -++.++|......--+++++ -+-+.++.+-|+.= +|+|++-.|-..-+ .++-+.. .
T Consensus 52 ~kpSTRTR~SFE-~A~~~LGg~~~~~~~~~~s~l~kGEsi~DTarvls~y--~D~iviR~~~~~~~--~e~a~~s----~ 122 (338)
T PRK08192 52 FEPSTRTRVSFG-CAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTY--SDVIAMRHPDAYSV--KEFAEGS----R 122 (338)
T ss_pred CCCCCCHHHHHH-HHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHCC--CCEEEEECCCHHHH--HHHHHCC----C
T ss_conf 289744699999-9999849986025783324467897899999998615--98999988510048--9987418----9
Q ss_pred HHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHH--CCCCCCCCEEEEECC---CCCCHHHHHHHHHHH-CCCEEEC
Q ss_conf 1321553388873047788756766799-99999986--787720012899616---442034689999862-0453312
Q gi|254780506|r 119 VDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQF--KGCDLSGQHAVVIGR---SNLFGKPMGQLLLSR-NATVTMA 191 (306)
Q Consensus 119 VDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y--~~i~l~Gk~vvVvGr---s~~VG~Pla~lL~~~-~atVti~ 191 (306)
..-.|. ++ .....||-+++ ++++.+++ .+-+++|++++.||. |+++ .-+..+|... |+.+++|
T Consensus 123 ---vPVINa-----~~-~~~~HPtQaLaDl~Ti~e~~~~~~~~l~glkia~vGD~~~~r~~-~s~~~ll~~~~g~~~~l~ 192 (338)
T PRK08192 123 ---VPVING-----GD-GSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTV-HSLSRLLCMYKNISFTLI 192 (338)
T ss_pred ---CCEEEC-----CC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHHHCCCEEEEE
T ss_conf ---878967-----88-98768278988899999998740898557489997677756389-999999996559889998
Q ss_pred CCCC---------------------CCHHHHHHHCCEEEE
Q ss_conf 4676---------------------534776422357365
Q gi|254780506|r 192 HSKT---------------------KNLPEICRTADILVV 210 (306)
Q Consensus 192 hs~T---------------------~~l~~~~~~ADivIs 210 (306)
..+. .|+++.++.||+|.+
T Consensus 193 ~P~~~~~p~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvy~ 232 (338)
T PRK08192 193 SPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYL 232 (338)
T ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECHHHHHCCCEEEEE
T ss_conf 9987789999999999849949997288897236849995
No 111
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=94.77 E-value=0.15 Score=31.58 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEECC-----CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH--HHCC
Q ss_conf 986789999999999998397000024-----741112266999999852312212588834688711378898--6068
Q gi|254780506|r 42 NDPASCSYVSAKTRMAKHCGFHSVQYN-----FPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSII--QSIV 114 (306)
Q Consensus 42 ddpaS~~Yv~~K~K~a~~lGI~~~~~~-----l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~--~~I~ 114 (306)
+.+..++=+. =.-++..+|....... +... +.+.++-+-|+ .=+|||++--. +|-+.+++- ..++
T Consensus 52 eK~STRTR~S-Fe~a~~qlGg~~~~l~~~~~Qlgr~---Esi~DTArVLs--r~~D~I~~R~~--~~~~v~~lA~~s~VP 123 (310)
T COG0078 52 EKTSTRTRVS-FEVAATQLGGHAIYLGPGDSQLGRG---ESIKDTARVLS--RMVDAIMIRGF--SHETLEELAKYSGVP 123 (310)
T ss_pred CCCCCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCC---CCHHHHHHHHH--HHHHEEEEECC--CHHHHHHHHHHCCCC
T ss_conf 4898404544-9999997689648708875526789---96788999998--55025778535--489999999727996
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC
Q ss_conf 74351321553388873047788756766799-99999986787720012899616442034689999862045331246
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS 193 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs 193 (306)
= .+..++-+.||-.+| .+.+.||+ | .++|++++-+|.++.|+.-|-..-..-|..|+++..
T Consensus 124 ---V-------------iNgLtD~~HP~Q~LADl~Ti~E~~-g-~l~g~k~a~vGDgNNv~~Sl~~~~a~~G~dv~ia~P 185 (310)
T COG0078 124 ---V-------------INGLTDEFHPCQALADLMTIKEHF-G-SLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATP 185 (310)
T ss_pred ---E-------------ECCCCCCCCCHHHHHHHHHHHHHC-C-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf ---6-------------725456668189999999999963-8-666857999767636999999999982986899789
Q ss_pred C-------------------------CCCHHHHHHHCCEEEEEC
Q ss_conf 7-------------------------653477642235736522
Q gi|254780506|r 194 K-------------------------TKNLPEICRTADILVVAV 212 (306)
Q Consensus 194 ~-------------------------T~~l~~~~~~ADivIsAv 212 (306)
+ |.|+.+-++.||+|.+-+
T Consensus 186 ~~~~p~~~~~~~a~~~a~~sg~~i~~t~d~~eAv~gADvvyTDv 229 (310)
T COG0078 186 KGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDV 229 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEECC
T ss_conf 86786989999999999853984898639889857899998367
No 112
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.66 E-value=0.052 Score=34.81 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=66.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCH--------H--------------------------------
Q ss_conf 001289961644203468999986204533124676534--------7--------------------------------
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNL--------P-------------------------------- 199 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l--------~-------------------------------- 199 (306)
.+|+++|||-|- +|--+|..|.++|..||+.+....-+ .
T Consensus 143 ~~k~vvVIGgG~-IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~~~~~~~v~~~~~g~~~~v~ 221 (400)
T PRK09754 143 PERSVVIVGAGT-IGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT 221 (400)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCEEEEE
T ss_conf 587399988558-9999999999759948999534634100269899999999999789899958758999789779999
Q ss_pred ---HHHHHCCEEEEECCC-CCC--CCCCCC-CCCCEEEEEEEEECCCCCCC-CC-EEECCCCHHHHHHCCEECCCCCC--
Q ss_conf ---764223573652244-321--220104-76626998311111267668-85-68417756787314400898698--
Q gi|254780506|r 200 ---EICRTADILVVAVGR-PRM--VQVDWI-KTGSLVIDVGINRINSPQLG-KT-VLVGDVADECKSVVGAITPVPGG-- 268 (306)
Q Consensus 200 ---~~~~~ADivIsAvG~-p~~--i~~~~v-k~gavvIDvGi~~~~~~~~~-~~-~~~GDvd~~~~~~a~~iTPVPGG-- 268 (306)
...-.||+||.|+|. |+. ....-+ .+|.|++|-. -+.+ .+ .-+|||.. .|.|.|
T Consensus 222 l~~G~~l~aD~VivaiGv~Pnt~la~~agL~~~~GI~VD~~------~~Ts~p~IyAaGDvA~---------~~~~~g~~ 286 (400)
T PRK09754 222 LQSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDEA------CRTCDPAIFAGGDVAI---------TRLDNGAL 286 (400)
T ss_pred ECCCCEEECCEEEECCCCCCCHHHHHHCCCCCCCEEEECCC------CCCCCCCEEEEECCCC---------CCCCCCCE
T ss_conf 86899998589998976753758998779975993999978------7648989999955203---------54888888
Q ss_pred --CCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf --686899999999999999986889855
Q gi|254780506|r 269 --VGPMTIAMLMANTVIAAYRSLGMKSPK 295 (306)
Q Consensus 269 --VGp~Tva~L~~N~v~aa~~~~~~~~~~ 295 (306)
+.-...|.-.- -.||...+|...|.
T Consensus 287 ~r~e~w~~A~~qg--~~aa~nm~G~~~~~ 313 (400)
T PRK09754 287 HRCESWENANNQA--QIAAAAMLGLPLPL 313 (400)
T ss_pred EEEHHHHHHHHHH--HHHHHHHCCCCCCC
T ss_conf 7723657888999--99999842999887
No 113
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.65 E-value=0.097 Score=32.94 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=52.4
Q ss_pred CCCCCCCEEEEECCC------CCCHH---HHHHHHHHH-CCCEEECCCCC-------------CCHHHHHHHCCEEEEEC
Q ss_conf 877200128996164------42034---689999862-04533124676-------------53477642235736522
Q gi|254780506|r 156 GCDLSGQHAVVIGRS------NLFGK---PMGQLLLSR-NATVTMAHSKT-------------KNLPEICRTADILVVAV 212 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs------~~VG~---Pla~lL~~~-~atVti~hs~T-------------~~l~~~~~~ADivIsAv 212 (306)
+-.+.++++.|+|-| .+-.. ++...|.++ +|.|......- .++.+.++.||++|-++
T Consensus 315 ~~~~~~~~I~iLGlafK~~tdD~R~Sps~~ii~~L~~~~~a~v~~~DP~v~~~~~~~~~~~~~~~~~~~~~~aD~vii~T 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAQLIAQWHSGETLVVEPNIHQLPKKLDGLVTLASLDEALATADVLVMLV 394 (415)
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEECCHHHHHHCCCEEEEEC
T ss_conf 46766877999976666999741358599999999973898399989988733576338713367999982799999924
Q ss_pred CCCCCCCCCC--CCCCCEEEE
Q ss_conf 4432122010--476626998
Q gi|254780506|r 213 GRPRMVQVDW--IKTGSLVID 231 (306)
Q Consensus 213 G~p~~i~~~~--vk~gavvID 231 (306)
..+.|-.-|| +| .-+|||
T Consensus 395 ~h~eFk~ld~~~l~-~k~viD 414 (415)
T PRK11064 395 DHSQFKAINGDNVH-QKYVVD 414 (415)
T ss_pred CCHHHCCCCHHHHC-CCEEEC
T ss_conf 98666279989978-886646
No 114
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=94.63 E-value=0.13 Score=32.10 Aligned_cols=207 Identities=26% Similarity=0.374 Sum_probs=133.8
Q ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-------HHH-HHHHHCCCCCCHHHCCH
Q ss_conf 9999998397000024741112266999999852312212588834688711-------378-89860687435132155
Q gi|254780506|r 53 KTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV-------SEQ-SIIQSIVPEKDVDGLHV 124 (306)
Q Consensus 53 K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i-------d~~-~i~~~I~p~KDVDGl~~ 124 (306)
--+.++..|+++.-+.++.....--+.+.+...-+- =+.|+=|=.|+...+ +++ ....+++.-+-++
T Consensus 19 HN~~~~~~g~~~~Y~~~~~~~~~Pll~~~~~~~~~~-G~~G~NVT~PfK~~~~~~~De~~~~A~~~gAVNTl~~le---- 93 (286)
T TIGR00507 19 HNAAFKQLGLEGPYLAFLVPPDDPLLEDAVSGFRAL-GFKGANVTVPFKEEAFQFLDEIDESAKLIGAVNTLKKLE---- 93 (286)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHCCCCHHHHHHCCCCCCEEEE----
T ss_conf 889998749832566412782360179999999838-984267506408889988415245677611245102431----
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHHHHH-CCCEEECCCC---CCCHH
Q ss_conf 338887304778875676679999999986787720-012899616442034689999862-0453312467---65347
Q gi|254780506|r 125 VNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLS-GQHAVVIGRSNLFGKPMGQLLLSR-NATVTMAHSK---TKNLP 199 (306)
Q Consensus 125 ~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~-Gk~vvVvGrs~~VG~Pla~lL~~~-~atVti~hs~---T~~l~ 199 (306)
-|+|+ |...++ .|.+.-|++.. ..+. +++++|+|.+- =+|-++.-|++. +.+|++||+. +++|.
T Consensus 94 --~g~l~-GyNTDG------~G~~~~L~~~l-~~l~~~~~~li~GAGG-Aa~a~a~~L~~~t~~~~~i~NRT~~ka~~La 162 (286)
T TIGR00507 94 --DGKLV-GYNTDG------IGLVSSLEQEL-SKLKPNQRVLIIGAGG-AAKAVALELLKATDCNVIIANRTVEKAEELA 162 (286)
T ss_pred --CCEEE-EECCCC------HHHHHHHHHHH-HCCCCCCEEEEEECCH-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf --77688-861760------45788888874-0368997799994286-7899999998600997899828778999999
Q ss_pred HH---------------------HHH--CCEEEEECC--C-CCC----CCCCCCCCCCEEEEEEEEEC-CCCCCCCCEEE
Q ss_conf 76---------------------422--357365224--4-321----22010476626998311111-26766885684
Q gi|254780506|r 200 EI---------------------CRT--ADILVVAVG--R-PRM----VQVDWIKTGSLVIDVGINRI-NSPQLGKTVLV 248 (306)
Q Consensus 200 ~~---------------------~~~--ADivIsAvG--~-p~~----i~~~~vk~gavvIDvGi~~~-~~~~~~~~~~~ 248 (306)
+. ..+ -|+||=|+. - ++. |.+++++++.+|.|.=+++. +.+
T Consensus 163 ~~~~~kln~~~G~~~~~~~~~~~l~~G~~DlIINATs~G~~~~~~~~~v~~~~~~~~~~v~D~~Y~p~t~Tp-------- 234 (286)
T TIGR00507 163 ERFQRKLNKKYGEIQAFSLDEVPLHKGKVDLIINATSAGMSGNIDEPPVPAELLKEGKLVYDLVYNPLTETP-------- 234 (286)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCH--------
T ss_conf 998988534248536521133555578567998546778888988745685341688689951468865577--------
Q ss_pred CCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 17756787314400898698686899999999999999986889
Q gi|254780506|r 249 GDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMK 292 (306)
Q Consensus 249 GDvd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~ 292 (306)
+=.+|+++ ..+++--|+| ||..+-..|-+.=.|..
T Consensus 235 --fl~~Ak~~--g~~~~~dG~g-----MLv~QAA~~F~lW~G~~ 269 (286)
T TIGR00507 235 --FLKEAKKR--GLTKVIDGLG-----MLVAQAALSFELWTGVE 269 (286)
T ss_pred --HHHHHHHC--CCCCCCCCHH-----HHHHHHHHHHHHHCCCC
T ss_conf --89999876--8856545304-----58999998666616531
No 115
>PRK12861 malic enzyme; Reviewed
Probab=94.60 E-value=0.23 Score=30.38 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHH-HCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCHH-HHHHHHHCCCCCCHHH
Q ss_conf 78999999999999-8397000024741112266999999852312212588834-6887113-7889860687435132
Q gi|254780506|r 45 ASCSYVSAKTRMAK-HCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQL-PLPSTVS-EQSIIQSIVPEKDVDG 121 (306)
Q Consensus 45 aS~~Yv~~K~K~a~-~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQl-PLP~~id-~~~i~~~I~p~KDVDG 121 (306)
+|.--.+.|.--.. -.||+..-+++. ..+.+++++.++.| .|+.-||-+.- --|+-+. ++++.+ +-|+-=
T Consensus 86 a~~pvmegk~~lfk~fa~id~~~i~~~-~~d~~~~i~~v~~~--~ptfgginledi~ap~cf~ie~~l~~----~~~ipv 158 (762)
T PRK12861 86 ASKPVMEGKAVLFKKFAGIDVFDIEIN-ETDPDKLVDIIAGL--EPTFGGINLEDIKAPECFTVERKLRE----RMKIPV 158 (762)
T ss_pred HCCCCCCCHHHHHHHHCCCCCEEEECC-CCCHHHHHHHHHHH--CCCCCCCCHHHCCCCCCHHHHHHHHH----HCCCCE
T ss_conf 047631017788887649982544208-89989999999985--88756237987689740279999998----679982
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEECCCC----
Q ss_conf 1553388873047788756766799999999867877200128996164420346899998620---453312467----
Q gi|254780506|r 122 LHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRN---ATVTMAHSK---- 194 (306)
Q Consensus 122 l~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~---atVti~hs~---- 194 (306)
||. | .-+-.=.+.+|.+--|+-. |-+++.-++|+.|.+- -|--.+.||..-| -.+++|.|+
T Consensus 159 ~hd---------d-qhgtaii~~a~l~nal~~~-~k~~~~~kiv~~GaGa-a~ia~~~l~~~~G~~~~ni~~~D~~G~i~ 226 (762)
T PRK12861 159 FHD---------D-QHGTAITVAAAFINGLKVV-GKSIKEVKVVTSGAGA-AALACLDLLVDLGLPVENIWVTDIEGVVY 226 (762)
T ss_pred ECC---------C-CCCHHHHHHHHHHHHHHHH-CCCHHHEEEEEECCCH-HHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 316---------7-7608999999999999982-8756561699968778-89999999998399955589994778511
Q ss_pred -------------------CCCHHHHHHHCCEEEEECCCCCCCCCCCCCC---CCEEEE
Q ss_conf -------------------6534776422357365224432122010476---626998
Q gi|254780506|r 195 -------------------TKNLPEICRTADILVVAVGRPRMVQVDWIKT---GSLVID 231 (306)
Q Consensus 195 -------------------T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~---gavvID 231 (306)
...|++.++.||++|.- -.|+.++++|++. ..+|.-
T Consensus 227 ~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfiG~-S~~~~~~~~mv~~Ma~~pivfa 284 (762)
T PRK12861 227 RGRTTLMDPAKERFAQETDARTLAEVIGGADVFLGL-SAGGVLKAEMLKAMAARPLILA 284 (762)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEEC-CCCCCCCHHHHHHHCCCCEEEE
T ss_conf 898653579999998568977799983789889976-7899899999985377876997
No 116
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.52 E-value=0.11 Score=32.67 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=15.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 0128996164420346899998620453312467
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
||+|.|+|-+. -|+.++.+|.++|+.|+++..+
T Consensus 7 ~~kv~V~GLG~-sG~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 7 GKKVLVLGLGK-SGLAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred CCEEEEEECCC-CCHHHHHHHHHCCCEEEEECCC
T ss_conf 99799992665-1099999999779869998389
No 117
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=94.48 E-value=0.19 Score=30.96 Aligned_cols=150 Identities=21% Similarity=0.327 Sum_probs=86.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEC-----CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 5999996798678999999999999839700002-----47411122669999998523122125888346887113788
Q gi|254780506|r 34 GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQY-----NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQS 108 (306)
Q Consensus 34 ~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~-----~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~ 108 (306)
.||.|. +-++.++=+..-. ++-++|-..--. +|.. -+.+.++=+=| +.=||||++= --+|-+.++
T Consensus 47 tlAliF--eK~STRTRvSFEv-A~y~lGg~~lyL~~~~~QlG~---gEsi~DTARVL--sRyVD~I~~R--~~~h~~v~~ 116 (341)
T TIGR00658 47 TLALIF--EKPSTRTRVSFEV-AAYQLGGQPLYLNPSDLQLGR---GESIKDTARVL--SRYVDGIMAR--VYKHEDVEE 116 (341)
T ss_pred CEEEEE--ECCCCCCCCCHHH-HHHHCCCCEEECCCCCCEECC---CCCCCCHHHHH--CCEEEEEEEE--CCCHHHHHH
T ss_conf 166665--2698652100779-998649821224875320036---88700011020--3156567773--255378999
Q ss_pred HHH--HCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCC-CCCCCC--------EEEEECCC-CCCHH
Q ss_conf 986--06874351321553388873047788756766799-9999998678-772001--------28996164-42034
Q gi|254780506|r 109 IIQ--SIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKG-CDLSGQ--------HAVVIGRS-NLFGK 175 (306)
Q Consensus 109 i~~--~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~-i~l~Gk--------~vvVvGrs-~~VG~ 175 (306)
+-+ .+|. .+..++-|.||=.+| .+++.|++ | +.|+|- ++|=||.+ +.|+-
T Consensus 117 lA~yasVPV----------------INgLtD~~HPcQ~LADllTI~E~~-g~~~l~g~nkGinsklk~vy~GDgRNNVcn 179 (341)
T TIGR00658 117 LAKYASVPV----------------INGLTDLFHPCQALADLLTIKEHF-GEKKLKGVNKGINSKLKVVYVGDGRNNVCN 179 (341)
T ss_pred HHHHCCCCE----------------ECCCCCCCCHHHHHHHHHHHHHHC-CCCCCCHHCCCCCCCCEEEEECCCCHHHHH
T ss_conf 985489854----------------605568552379999988898746-795600000352442168997378512688
Q ss_pred HHHHHHH--HHCCCEEECCCC-------------------------CCCHHHHHHHCCEEEEEC
Q ss_conf 6899998--620453312467-------------------------653477642235736522
Q gi|254780506|r 176 PMGQLLL--SRNATVTMAHSK-------------------------TKNLPEICRTADILVVAV 212 (306)
Q Consensus 176 Pla~lL~--~~~atVti~hs~-------------------------T~~l~~~~~~ADivIsAv 212 (306)
- +||. .-|..|.+|-.+ |.|+.+-.+.||||.|=|
T Consensus 180 S--L~la~a~~Gm~~~v~tP~gyeP~~~~v~~A~~~a~e~Gg~~~lt~Dp~eAv~gADv~YTDV 241 (341)
T TIGR00658 180 S--LLLAAAKLGMDVVVATPEGYEPDAEIVKKAKKIAKENGGSVELTHDPKEAVKGADVIYTDV 241 (341)
T ss_pred H--HHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEEE
T ss_conf 9--9999997285478878888887878999999999717985999637798612897899741
No 118
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.47 E-value=0.052 Score=34.84 Aligned_cols=54 Identities=6% Similarity=0.016 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 999999999983970000247411122669999998523122125888346887113788
Q gi|254780506|r 49 YVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQS 108 (306)
Q Consensus 49 Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~ 108 (306)
|-....|+|-+.|+.+-.....++.. -++....++- - .-+|++.=+.++++--.
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~A----g-it~v~~~G~dPGi~nv~ 133 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKA----G-ITAVLGCGFDPGITNVL 133 (389)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCHH-HHHHHHHHHC----C-CEEECCCCCCCCHHHHH
T ss_conf 42999999998599889754677506-5654898874----9-07971667686457999
No 119
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=94.46 E-value=0.12 Score=32.38 Aligned_cols=164 Identities=19% Similarity=0.343 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCC-------CCCCHHHH
Q ss_conf 26699999985231221258883468871137889860687435132155338887304778875-------67667999
Q gi|254780506|r 75 QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGL-------VPCTPAGA 147 (306)
Q Consensus 75 e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~-------~PcTp~av 147 (306)
-+-+++....|-...=+===|+.|-+|+|--|=-|.-+--| |+|||-- ..+++| +|.| .|.
T Consensus 20 vdcVE~aF~~LA~~~V~MPpILrLdipeh~GEVdVKTAYvP--gld~FAi---------K~SPGFFdNPklGLPS~-nGl 87 (326)
T TIGR02992 20 VDCVENAFAALATGKVVMPPILRLDIPEHNGEVDVKTAYVP--GLDGFAI---------KVSPGFFDNPKLGLPSL-NGL 87 (326)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC--CCCCCEE---------EECCCCCCCCCCCCCCH-HHH
T ss_conf 99998989987538700685430488641561323421268--8756515---------52577237788787513-468
Q ss_pred HHHHHHHCCC----------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHC--------------
Q ss_conf 9999986787----------------------------7200128996164420346899998620--------------
Q gi|254780506|r 148 ILLIEQFKGC----------------------------DLSGQHAVVIGRSNLFGKPMGQLLLSRN-------------- 185 (306)
Q Consensus 148 ~~ll~~y~~i----------------------------~l~Gk~vvVvGrs~~VG~Pla~lL~~~~-------------- 185 (306)
|-||-...|+ .-...+++|+|-+.==-.=|-.|++-|+
T Consensus 88 M~llS~rTGll~ALLLDNGYLTdVRTAAAGAVAAR~LaR~d~s~~a~~GAG~QArLQL~AL~LvRdI~~ariWAR~~akA 167 (326)
T TIGR02992 88 MVLLSSRTGLLQALLLDNGYLTDVRTAAAGAVAARHLAREDSSVVAILGAGMQARLQLEALTLVRDIRSARIWARDSAKA 167 (326)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 87785227899999822751357889988999998862765657767525567899999986315214432102556789
Q ss_pred ------------CCEEECCCCCCCHHHHHHHCCEEEEECCC-CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCC
Q ss_conf ------------45331246765347764223573652244-32122010476626998311111267668856841775
Q gi|254780506|r 186 ------------ATVTMAHSKTKNLPEICRTADILVVAVGR-PRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVA 252 (306)
Q Consensus 186 ------------atVti~hs~T~~l~~~~~~ADivIsAvG~-p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd 252 (306)
-.|+.. .+..+-+.-|||+|+.+.- .-.++.+|++||..|+=.|-.. + - -+.++
T Consensus 168 e~~A~~L~~~~G~~v~a~----td~~~A~~~ADI~vTtTP~~~Pvl~a~wL~pGqh~tAMGsD~----E-H----KnE~~ 234 (326)
T TIGR02992 168 EALALQLSSELGIDVTAA----TDVRAALSGADIIVTTTPSETPVLKAEWLEPGQHVTAMGSDA----E-H----KNEID 234 (326)
T ss_pred HHHHHHHHHHCCEEEEEC----CCHHHHCCCCCEEEECCCCCCCCHHHHHCCCCCEEEEECCCC----C-C----CCCCC
T ss_conf 999999887469068750----476862366887987487987302073367887898606770----1-2----23436
Q ss_pred HHHHHHCCEEC
Q ss_conf 67873144008
Q gi|254780506|r 253 DECKSVVGAIT 263 (306)
Q Consensus 253 ~~~~~~a~~iT 263 (306)
|+|.-++..|-
T Consensus 235 P~~~a~a~~YV 245 (326)
T TIGR02992 235 PAVIAKADLYV 245 (326)
T ss_pred HHHHHHHHCCC
T ss_conf 47885411156
No 120
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.46 E-value=0.044 Score=35.37 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 999999998678772001289961644203468-999986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
..+...+++- + .|+=|-|..-+...|.|- +.+-..+.|-.. -|+.+......-.|-|-|+ .|+++..++
T Consensus 131 q~~~~~M~~~-~---~G~IInisS~~~~~~~~~~~~Y~asKaal~~----ltr~lA~ela~~gIrVN~I-~PG~i~T~~ 200 (259)
T PRK06124 131 RLAAQRMVRQ-G---YGRIIAITSIAGEVARAGDAVYPAAKQGLTG----LMRALAAEFGPHGITSNAI-APGYFATET 200 (259)
T ss_pred HHHHHHHHHC-C---CCEEEEECCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCCCEEEEEE-EECCCCCCC
T ss_conf 9999998776-9---9369997233004679983789999999999----9999999965139799999-758897732
No 121
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=94.39 E-value=0.2 Score=30.79 Aligned_cols=95 Identities=20% Similarity=0.335 Sum_probs=65.3
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCEEEEECC----------------CCCCHHHHHHHHHHHCCCEE
Q ss_conf 8887304778875676679999999986-787720012899616----------------44203468999986204533
Q gi|254780506|r 127 AGKVMIGDFTTGLVPCTPAGAILLIEQF-KGCDLSGQHAVVIGR----------------SNLFGKPMGQLLLSRNATVT 189 (306)
Q Consensus 127 ~g~l~~~~~~~~~~PcTp~av~~ll~~y-~~i~l~Gk~vvVvGr----------------s~~VG~Pla~lL~~~~atVt 189 (306)
.|+|.-|+.-.+-+|- |.-++..+.++ ..-+++||+++|-+- |.--|.-+|.-+..+||.||
T Consensus 152 ~G~LAcgd~G~Grl~e-p~~I~~~i~~~l~~~~l~gkkvLITaG~T~E~IDpVR~IsN~SSGkmG~aiA~~a~~~GA~Vt 230 (392)
T PRK05579 152 SGRLACGDVGKGRMAE-PEEIVAAAERLLGPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVT 230 (392)
T ss_pred CCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 6752463323568999-999999999850677767887999747724776762476657865899999999996799799
Q ss_pred ECCCCCC----------------CH----HHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 1246765----------------34----776422357365224432122010
Q gi|254780506|r 190 MAHSKTK----------------NL----PEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 190 i~hs~T~----------------~l----~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
+.|..+. ++ .+...++|++|.|+-.+.|-..+.
T Consensus 231 lI~g~~~~~~p~~v~~i~v~ta~eM~~~v~~~~~~~D~~I~aAAVsDf~p~~~ 283 (392)
T PRK05579 231 LVSGPVNLPTPAGVKRIDVESAQEMLDAVLAAAQKADIFIMAAAVADYRPATV 283 (392)
T ss_pred EEECCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEEECCEEECCC
T ss_conf 99647877899996799967599999999973544789999301100011454
No 122
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.05 Score=34.97 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHHCC-CCCCCEEEEEC---CCCCCHHHHHHHH
Q ss_conf 99967986789999999999998397000024741112-2669999998523-12212588834---6887113788986
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLSLNK-DDSIHGILVQL---PLPSTVSEQSIIQ 111 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~LN~-d~~V~GIlvQl---PLP~~id~~~i~~ 111 (306)
+++.+-+.+.. +.-...++..|.++..+.. |++ ++++.+.+++.-+ -..+|. +|-- ..+..+ .
T Consensus 36 V~i~~~~~~~~---~~~~~~i~~~g~~~~~~~~--Dv~~~~~v~~~v~~~~~~~G~iDi-LVnnAG~~~~~~~------~ 103 (258)
T PRK06949 36 VVLASRRVERL---KELRAEIEAEGGAAHVVSL--DVTDYQSIKAAVAHAETEAGTIDI-LVNNSGVSTTQKL------V 103 (258)
T ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHHCCCCE-EEECCCCCCCCCH------H
T ss_conf 99996988999---9999999965992899982--689999999999999998499989-9989988999892------6
Q ss_pred HCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCEEEEECCC-CCCHHH-HHHHHHHHCCC
Q ss_conf 0687435132155338887304778875676679999999986787--7200128996164-420346-89999862045
Q gi|254780506|r 112 SIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGC--DLSGQHAVVIGRS-NLFGKP-MGQLLLSRNAT 187 (306)
Q Consensus 112 ~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i--~l~Gk~vvVvGrs-~~VG~P-la~lL~~~~at 187 (306)
-++++ |-|-.-..|+ ...|.-|. ..+-.++++..+. +..+.+++-++-. -..+.| .+.+-..|.|-
T Consensus 104 ~~~~~-~~~~~~~vNl--------~g~~~~~~-~~~~~mi~~~~~~~~~~~~G~IVni~S~~~~~~~~~~~~Y~asKaav 173 (258)
T PRK06949 104 DVTPA-DFEFVFDTNT--------RGAFFVAQ-EVAKRMIARAKGAGNAKPQCRIINIASVAGLRVLPQIGLYCMSKAAV 173 (258)
T ss_pred HCCHH-HHHHHHHHHH--------HHHHHHHH-HHHHHHHHHCCCCCCCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHH
T ss_conf 59999-9999999870--------99999999-99999998457998888983999983555476899838999999999
Q ss_pred EEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 3312467653477642235736522443212201047
Q gi|254780506|r 188 VTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 188 Vti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+..|+.+......-.|-|-++ .|+++..+|.+
T Consensus 174 ----~~ltr~lA~ela~~gIrVN~I-aPG~i~T~~~~ 205 (258)
T PRK06949 174 ----VHMTRAMALEWGRHGINVNAI-CPGYIDTEINH 205 (258)
T ss_pred ----HHHHHHHHHHHHHCCEEEEEE-EECCCCCCCCH
T ss_conf ----999999999962219799999-65788870001
No 123
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.32 E-value=0.25 Score=30.11 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=61.5
Q ss_pred CCCCCHHHHH-HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCC-------------------CCCC
Q ss_conf 5676679999-999986787720012899616442034689999862045-331246-------------------7653
Q gi|254780506|r 139 LVPCTPAGAI-LLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHS-------------------KTKN 197 (306)
Q Consensus 139 ~~PcTp~av~-~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs-------------------~T~~ 197 (306)
+++|...+.. ..++ ..++ -.|.+|+|+|-+. +|-=.++++...||. |+.+.. +..+
T Consensus 156 ~l~~~~~~~~~~~~~-~~~~-~~g~~VlV~GaG~-iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~lGa~~~i~~~~~~ 232 (358)
T TIGR03451 156 LLGCGVMAGLGAAVN-TGGV-KRGDSVAVIGCGG-VGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTD 232 (358)
T ss_pred HHHCCHHHHHHHHHH-HCCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCC
T ss_conf 740214454688986-4079-9998899967376-999999999983991899991988999999965990997399878
Q ss_pred HHHHHH------HCCEEEEECCCCCCCCC--CCCCCCCEEEEEEEE
Q ss_conf 477642------23573652244321220--104766269983111
Q gi|254780506|r 198 LPEICR------TADILVVAVGRPRMVQV--DWIKTGSLVIDVGIN 235 (306)
Q Consensus 198 l~~~~~------~ADivIsAvG~p~~i~~--~~vk~gavvIDvGi~ 235 (306)
+.+.++ -+|++|-++|.|.-+.. +.+++|..++=+|+.
T Consensus 233 ~~~~v~~~t~g~G~Dvvie~~G~~~~~~~al~~~~~gG~iv~~G~~ 278 (358)
T TIGR03451 233 PVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8999999858988749999999989999999976279699999225
No 124
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.048 Score=35.07 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 6765347764223573652244321220104
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
..|+.+......-.|-|-++ .|+++..++.
T Consensus 166 ~ltk~lA~ela~~gIrVN~V-~PG~i~T~~~ 195 (263)
T PRK08339 166 GLVRTLAKELGPKGITVNGI-MPGIIRTDRV 195 (263)
T ss_pred HHHHHHHHHHCCCCEEEEEE-EECCCCCHHH
T ss_conf 99999999971119799999-5287987236
No 125
>PRK07041 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.057 Score=34.57 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 765347764223573652244321220104
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
-|+.+.... |.|=|-++ .|+++..+|.
T Consensus 157 ltr~lA~el--a~IrVN~I-aPG~i~T~~~ 183 (240)
T PRK07041 157 LARGLALEL--APVRVNAV-SPGLVDTPLW 183 (240)
T ss_pred HHHHHHHHH--CCCEEEEE-EECCCCCHHH
T ss_conf 999999982--89289998-4187677366
No 126
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.24 E-value=0.052 Score=34.82 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCC--CCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 99999999867877200128996164--420346-899998620453312467653477642235736522443212201
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRS--NLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVD 221 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs--~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~ 221 (306)
..++..++.- .+-+++.++-. ...|.| .+.+-..+.|-. ..|+.+......-.|-|-++ .|+++..+
T Consensus 123 ~~~~~~m~~~-----~~G~II~isS~~g~~~~~~~~~~Y~asKaal~----~ltk~lA~e~~~~gIrvN~I-~PG~i~T~ 192 (253)
T PRK12826 123 QAALPALKRA-----GGGRIVLTSSVAGPRVGYPGLAHYAASKAGVV----GFTRALALELARRNITVNSV-HPGMVDTP 192 (253)
T ss_pred HHHHHHHHHC-----CCCEEEEEECHHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHCEEEEEE-EECCCCCH
T ss_conf 8746999976-----99769999525641568997388999999999----99999999853209599999-62879672
Q ss_pred CCCC
Q ss_conf 0476
Q gi|254780506|r 222 WIKT 225 (306)
Q Consensus 222 ~vk~ 225 (306)
|.++
T Consensus 193 ~~~~ 196 (253)
T PRK12826 193 MAGN 196 (253)
T ss_pred HHHC
T ss_conf 1214
No 127
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.19 E-value=0.054 Score=34.71 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 68999986204533124676534776422357365224432122010476
Q gi|254780506|r 176 PMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 176 Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
..+.+-..|.|-+ .-|+.+......-.|=|-++ .|+++..+|.++
T Consensus 157 ~~~~Y~asKaav~----~ltr~lA~ela~~gIrVN~V-aPG~i~T~~~~~ 201 (253)
T PRK05867 157 QVSHYCASKAAVI----HLTKAMAVELAPHKIRVNSV-SPGYILTELVEP 201 (253)
T ss_pred CHHHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEE-EECCCCCCCCCH
T ss_conf 0277899999999----99999999970009299999-658899876421
No 128
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.053 Score=34.79 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=17.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHH
Q ss_conf 9996798678999999999999839700002474111-226699999985
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSL 85 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~L 85 (306)
++..+-++.. .+...+..++.|.++..+. .|+ +++++.+.+++.
T Consensus 35 V~i~~r~~~~---~~~~~~~l~~~~~~~~~~~--~Dv~~~~~~~~~~~~~ 79 (260)
T PRK07576 35 VAVASRSQEK---VDAAVAQLQQAGPEALGVS--ADVRDYAAVEAAFAAI 79 (260)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCCEEEEE--ECCCCHHHHHHHHHHH
T ss_conf 9999798899---9999999995399489999--3189999999999999
No 129
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.056 Score=34.60 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=63.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9996798678999999999999839700002474111226699999985231-221258883468871137889860687
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIVP 115 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~p 115 (306)
+++++-++.. ..+.++++|-++..++.. -.+++++.+.+++..+. ..+|..+---- +.+
T Consensus 33 V~i~~r~~~~------l~~~~~~l~~~~~~~~~D-v~~~~~~~~~~~~~~~~~g~iDiLvnnAG-------------~~~ 92 (249)
T PRK06500 33 VAITGRDAAT------LEAARAELGEDALVIRND-AGSVAAQRALAQALAEAGGRLDAVFINAG-------------VAK 92 (249)
T ss_pred EEEEECCHHH------HHHHHHHHCCCEEEEEEE-CCCHHHHHHHHHHHHHHCCCCCEEEECCC-------------CCC
T ss_conf 9999699899------999999858975999951-79999999999999997699989998998-------------789
Q ss_pred CCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHHHH-HHHHHCCCEEECCC
Q ss_conf 43513215533888730477887567667999999998678772001289961-64420346899-99862045331246
Q gi|254780506|r 116 EKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPMGQ-LLLSRNATVTMAHS 193 (306)
Q Consensus 116 ~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pla~-lL~~~~atVti~hs 193 (306)
.+++.-++....-+.+.-+....|.- + .+++.+++.. | .+++++ -+...|.|-.. +-..+.|-. .
T Consensus 93 ~~~~~~~~~e~w~~~~~vNl~~~f~~-~-~~~~p~m~~~------g-~iI~~sS~~~~~~~~~~~aY~asKaal~----~ 159 (249)
T PRK06500 93 FAPLEDWDEAMFDRSFNTNVKGPYFL-I-QALLPLLNNP------A-SIVLNGSINAHIGMPNSSVYAASKAALL----S 159 (249)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHH-H-HHHHHHHHCC------C-CEEEEEECEEEECCCCCHHHHHHHHHHH----H
T ss_conf 99916699999999999864569999-9-9999986229------8-1899822307616897377899999999----9
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 765347764223573652244321220104
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
-|+.+....-.-.|=|-|+ .|+++..+|.
T Consensus 160 ltk~lA~E~a~~gIrVNaI-aPG~i~T~~~ 188 (249)
T PRK06500 160 LAKTLSGELLPRGIRVNAV-SPGPVQTPLY 188 (249)
T ss_pred HHHHHHHHHCCCCEEEEEE-EECCCCCHHH
T ss_conf 9999999965049599999-7788977335
No 130
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.06 Score=34.39 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 6765347764223573652244321220104
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
..|+.+......-.|-|-++ .|+++..++.
T Consensus 168 ~ltk~lA~ela~~gIrVN~V-~PG~i~T~~~ 197 (265)
T PRK07062 168 NLVKSLATELAPEGVRVNSI-LLGLVESGQW 197 (265)
T ss_pred HHHHHHHHHHHHHCEEEEEE-EECCCCCCHH
T ss_conf 99999999976649399989-6085877245
No 131
>KOG0409 consensus
Probab=94.12 E-value=0.18 Score=31.06 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=50.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC--------------CCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 772001289961644203468999986204533124676--------------534776422357365224432122010
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT--------------KNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T--------------~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
+.-+-+++--||-+. -|.+++.-|+..|.+||+.++.- ..+.|.++.+|++|+.++-|.-++.-+
T Consensus 31 ~~~s~~~iGFIGLG~-MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~ 109 (327)
T KOG0409 31 ITPSKTRIGFIGLGN-MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVL 109 (327)
T ss_pred CCCCCCEEEEEEECC-CHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHHHCCHHHHHHHCCEEEEECCCHHHHHHHH
T ss_conf 786655135774341-1189999999759879999586788789997050140797999863688999768807668884
Q ss_pred C
Q ss_conf 4
Q gi|254780506|r 223 I 223 (306)
Q Consensus 223 v 223 (306)
.
T Consensus 110 ~ 110 (327)
T KOG0409 110 L 110 (327)
T ss_pred C
T ss_conf 0
No 132
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.11 E-value=0.059 Score=34.47 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 46765347764223573652244321220104
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
+..|+.+....-.-.|-|-++ .|+++..+|.
T Consensus 182 ~~lTk~lA~e~a~~gIrVNaI-aPG~i~T~~~ 212 (278)
T PRK08277 182 SNFTQWLAVEFAKVGIRVNAI-APGFFLTEQN 212 (278)
T ss_pred HHHHHHHHHHHCCCCEEEEEE-EECCCCCHHH
T ss_conf 999999999965359499998-5288877266
No 133
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.10 E-value=0.13 Score=32.18 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=38.5
Q ss_pred CCHHHH----HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCE-EECCCC
Q ss_conf 667999----99999867877200128996164420346899998620453-312467
Q gi|254780506|r 142 CTPAGA----ILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATV-TMAHSK 194 (306)
Q Consensus 142 cTp~av----~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atV-ti~hs~ 194 (306)
+|..|+ -+.+++. +.+++|++++|-|-++ ||.-+|.+|.+.||+| ++..++
T Consensus 1 ATG~Gv~~~~~~a~~~~-~~~l~g~~vaVqGfGn-VG~~~a~~l~~~GakvvavsD~~ 56 (217)
T cd05211 1 ATGYGVVVAMKAAMKHL-GDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred CCCHHHHHHHHHHHHHC-CCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 95137999999999976-9685799999989889-99999999998599899998578
No 134
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.01 E-value=0.061 Score=34.33 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=20.2
Q ss_pred HHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 998620453312467653477642235736522443212201047
Q gi|254780506|r 180 LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 180 lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+-..|.|.+ .-|+.+....-.-.|-|-++ .|+++..+|.+
T Consensus 166 Y~asKaav~----~ltr~lA~e~a~~gIrVNaI-aPG~i~T~~~~ 205 (259)
T PRK08213 166 YNTSKGAVI----NFTRALAAEWGPHGIRVNAI-APGFFPTKMTR 205 (259)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCCCC
T ss_conf 999999999----99999999961039199999-77989885521
No 135
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.99 E-value=0.055 Score=34.65 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=32.9
Q ss_pred HHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 468-9999862045331246765347764223573652244321220104766
Q gi|254780506|r 175 KPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 175 ~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~g 226 (306)
.|. +.+-..|.| .+..|+.|........|=|.++- |+++..+|+.+.
T Consensus 186 ~p~~~~Y~ASKaA----l~~lt~sLa~El~~~gIrVn~V~-PG~V~Tpm~a~~ 233 (290)
T PRK05866 186 SPLFSVYNASKAA----LSAVSRVIETEWGDRGVHSTTLY-YPLVATPMIAPT 233 (290)
T ss_pred CCCCCHHHHHHHH----HHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCCCC
T ss_conf 9886418999999----99999999998526196999997-688987567988
No 136
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.96 E-value=0.21 Score=30.58 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=17.8
Q ss_pred CCCCEEEEEE-ECCCH-----HHHHHHHHHHHHHHHC
Q ss_conf 9997599999-67986-----7899999999999983
Q gi|254780506|r 30 GVQVGLAVVL-VGNDP-----ASCSYVSAKTRMAKHC 60 (306)
Q Consensus 30 g~~P~LavIl-vGddp-----aS~~Yv~~K~K~a~~l 60 (306)
...|..++++ +.+|. .-.-|.+.|.+-....
T Consensus 183 ~~~p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~ 219 (468)
T PRK04690 183 GARPELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEG 219 (468)
T ss_pred CCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 4787787530488878746089999999999999657
No 137
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.92 E-value=0.067 Score=34.07 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 6765347764223573652244321220104
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
..|+.+......-.|-|.++ .|+++..+|.
T Consensus 172 ~ltk~lA~el~~~gIrVN~I-~PG~i~T~~~ 201 (253)
T PRK08217 172 AMTVTWAKELARYGIRVAAI-APGVIETEMT 201 (253)
T ss_pred HHHHHHHHHHHHCCEEEEEE-EECCCCCCCC
T ss_conf 99999999953219599999-7388987331
No 138
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.068 Score=34.04 Aligned_cols=54 Identities=9% Similarity=0.032 Sum_probs=23.1
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCC-CCCCCEEE
Q ss_conf 9996798678999999999999839700002474111-22669999998523-12212588
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNK-DDSIHGIL 95 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~-d~~V~GIl 95 (306)
+++.+-+++. .+...+..++.|.++..++. |+ .++++.+.+++.-+ =..+|.++
T Consensus 33 V~i~~~~~~~---~~~~~~~i~~~g~~~~~~~~--Dv~~~~~v~~~~~~~~~~fG~iDilV 88 (250)
T PRK07774 33 VVVADINAEG---AERVAKQIVADGGTAIAVQV--DVSDPDSAKAMADRTVSAFGGIDYLV 88 (250)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCEEEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999798899---99999999855984999982--58999999999999999839998999
No 139
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.88 E-value=0.068 Score=34.00 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=62.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEEE--CCCCCCHHHHHHHHH
Q ss_conf 9996798678999999999999839700002474111-226699999985231-221258883--468871137889860
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILVQ--LPLPSTVSEQSIIQS 112 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlvQ--lPLP~~id~~~i~~~ 112 (306)
+++++-++... +...+..++.|.++..+.. |+ +++++.+.+++..+. ..+|+.+-- ...+..+. .
T Consensus 32 V~~~~r~~~~l---~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~~g~iDilvnnAg~~~~~~~~------~ 100 (246)
T PRK05653 32 VVIYDSNEEAA---EALAEELRAAGGEAALLVF--DVTDEAAVRALIEAAVERFGGLDVLVNNAGITRDALLP------R 100 (246)
T ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEE--ECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCH------H
T ss_conf 99997999999---9999999965994899997--28999999999999999749986999899999998801------3
Q ss_pred CCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEEC
Q ss_conf 68743513215533888730477887567667999999998678772001289961644203468-99998620453312
Q gi|254780506|r 113 IVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMA 191 (306)
Q Consensus 113 I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~ 191 (306)
++. .|.|-.-..|+- . ..-++ ..++..++.- + .|.=+.+-..+...|.|- +.+-..+.|-.
T Consensus 101 ~~~-~~~~~~~~vNl~--------~-~~~~~-~~~~~~m~~~-~---~G~II~isS~~~~~~~~~~~~Y~asKaal~--- 162 (246)
T PRK05653 101 MSE-EDWDRVIDTNLT--------G-TFNVC-RAALPPMRKA-R---YGRIVNISSVSGVAGNPGQTNYAAAKAGVI--- 162 (246)
T ss_pred CCH-HHHHHHHHHHHH--------H-HHHHH-HHHHHHHHHH-C---CCCEEEECCHHHCCCCCCCHHHHHHHHHHH---
T ss_conf 999-999999998608--------8-99999-9999999984-6---997899836554678999666899999999---
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 46765347764223573652244321220104
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
..|+.+......-.|-|.++ .|+++..+|.
T Consensus 163 -~lt~~la~e~~~~~IrvN~I-~PG~i~T~~~ 192 (246)
T PRK05653 163 -GLTKALALELASRGITVNAV-APGFIDTDMT 192 (246)
T ss_pred -HHHHHHHHHHHHHCEEEEEE-EECCCCCCCC
T ss_conf -99999999950439399999-6388877231
No 140
>KOG1494 consensus
Probab=93.85 E-value=0.057 Score=34.58 Aligned_cols=69 Identities=25% Similarity=0.428 Sum_probs=48.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHC---------------CCEEECCCCC----------CCHHHHHHHCCEEEEE
Q ss_conf 77200128996164420346899998620---------------4533124676----------5347764223573652
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRN---------------ATVTMAHSKT----------KNLPEICRTADILVVA 211 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~---------------atVti~hs~T----------~~l~~~~~~ADivIsA 211 (306)
..-.+.+|.|+|.+.=+|.||++||...- -+..+-|..| +.|++..+.||+||-.
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEEC
T ss_conf 55676249997348766756899974285523013332036986202200167887131267836789875389789963
Q ss_pred CCCC---CCCCCCCCCC
Q ss_conf 2443---2122010476
Q gi|254780506|r 212 VGRP---RMVQVDWIKT 225 (306)
Q Consensus 212 vG~p---~~i~~~~vk~ 225 (306)
+|.| ++-+-|.+.-
T Consensus 104 AGVPRKPGMTRDDLFn~ 120 (345)
T KOG1494 104 AGVPRKPGMTRDDLFNI 120 (345)
T ss_pred CCCCCCCCCCHHHHHHC
T ss_conf 89989999857776641
No 141
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.078 Score=33.60 Aligned_cols=155 Identities=19% Similarity=0.093 Sum_probs=60.4
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9996798678999999999999839700002474111-226699999985231221258883468871137889860687
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVP 115 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p 115 (306)
+++++-+.+...-+....+.. .|..+..+. .|. ..+++.+.++++. .+|.++=--- +.+
T Consensus 34 V~i~~r~~~~l~~~~~~l~~~--~~~~~~~~~--~D~~~~~~~~~~~~~~g---~iDiLVnnAG-------------~~~ 93 (259)
T PRK06125 34 LVLAARDADALAALAADLRAA--HGVDVAVHA--LDLSSPEAREQLAAEAG---DIDILVNNAG-------------AIP 93 (259)
T ss_pred EEEEECCHHHHHHHHHHHHHH--CCCCEEEEE--CCCCCHHHHHHHHHHHC---CCCEEEECCC-------------CCC
T ss_conf 999979889999999999870--098669998--88999999999999858---9989997687-------------789
Q ss_pred CCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCC
Q ss_conf 435132155338887304778875676679999999986787720012899616442034689-9998620453312467
Q gi|254780506|r 116 EKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSK 194 (306)
Q Consensus 116 ~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~ 194 (306)
.++.+-+++...-+.+.-+... ..=|+ .+++..++.- + .|.-+-+.+.+...+.|-. ..=..+.|. ++.
T Consensus 94 ~~~~~~~~~~~w~~~~~vnl~~-~~~l~-~~~~p~m~~~-~---~G~Iini~s~~~~~~~~~~~~y~asKaal----~~l 163 (259)
T PRK06125 94 GGSLDDVDDAAWRAGWELKVFG-YINLT-RLFYPRMKAR-G---SGVIVNVIGAAGENPDAGYICGSAGNAAL----MAF 163 (259)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHC-C---CCEEEEEEECCCCCCCCCCHHHHHHHHHH----HHH
T ss_conf 9864549999999999986343-78899-9999976534-9---81999994213378887648999999999----999
Q ss_pred CCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 6534776422357365224432122010
Q gi|254780506|r 195 TKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 195 T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
|+.|.....+--|-|-+| .|+++..++
T Consensus 164 tr~lA~e~~~~gIrVNaV-~PG~v~T~~ 190 (259)
T PRK06125 164 TRALGGKSLDDGIRVVGV-NPGPVGTDR 190 (259)
T ss_pred HHHHHHHHCCCCEEEEEE-EECCCCCCH
T ss_conf 999999856678499998-668888705
No 142
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.78 E-value=0.57 Score=27.63 Aligned_cols=83 Identities=22% Similarity=0.182 Sum_probs=59.6
Q ss_pred HHHHHHCCCCCCHH----HCCHHHHHHHHHC------C-------------CCCCCCCCCHHHHHHH----HHHHCCCCC
Q ss_conf 88986068743513----2155338887304------7-------------7887567667999999----998678772
Q gi|254780506|r 107 QSIIQSIVPEKDVD----GLHVVNAGKVMIG------D-------------FTTGLVPCTPAGAILL----IEQFKGCDL 159 (306)
Q Consensus 107 ~~i~~~I~p~KDVD----Gl~~~N~g~l~~~------~-------------~~~~~~PcTp~av~~l----l~~y~~i~l 159 (306)
+++...|-|+.||= |.++.-+|.|+-. . -+.+..-+|-.|++.. |++ .+.++
T Consensus 172 ~eL~~~IGp~~DVPApDiGtg~remgwm~d~Y~~i~~~~~gvvTGKp~~~GGs~gR~eATG~G~vy~~~e~l~~-~~~~l 250 (469)
T PTZ00079 172 TELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKRLRNEFNGVLTGKNVKWGGSNIRPEATGYGAVYFVEEVLKS-LNIVV 250 (469)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCC
T ss_conf 99998539986567876776899999999999850586751771887100686786762428899999999986-79985
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC
Q ss_conf 00128996164420346899998620453312
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMA 191 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~ 191 (306)
+||+|+|-|-++ ||.-.|..|.+.||+|..+
T Consensus 251 ~gk~vaIqGfGN-Vg~~aA~kl~e~GakVVav 281 (469)
T PTZ00079 251 EKKTAVVSGSGN-VAQYCVEKLLQLGAKVLTL 281 (469)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
T ss_conf 788899976673-8999999999769989999
No 143
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.78 E-value=0.11 Score=32.53 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCEEEEECCCCCCHH-HHHHHHHCCCCC---CHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC------CC
Q ss_conf 125888346887113-788986068743---51321553388873047788756766799999999867877------20
Q gi|254780506|r 91 IHGILVQLPLPSTVS-EQSIIQSIVPEK---DVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCD------LS 160 (306)
Q Consensus 91 V~GIlvQlPLP~~id-~~~i~~~I~p~K---DVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~------l~ 160 (306)
.|=|++=.|+..-.+ ..++...+++.- ||=..-.. +-+.+. +..+.|+|+-|.|=-+ ..|+. +.
T Consensus 59 aDliila~Pv~~~~~~~~~~~~~l~~~~iitDv~SvK~~-i~~~~~-~~~~~fVg~HPMAGsE----~sG~~~a~~dLF~ 132 (280)
T PRK07417 59 CDLVILALPIGLLLPPSEELIPALPPEAIVTDVGSVKEP-IVEAWE-KLHPRFVGSHPMAGTA----ESGVEAGQRGLFK 132 (280)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHH-HHHHHH-HCCCCCCCCCCCCCCC----CCCCCCCCHHHHH
T ss_conf 998998797477899999998647898489965223078-999998-6079862369807688----8771203466750
Q ss_pred CCEEEEECCCCCCH---HHHHHHHHHHCCCEEECCCC
Q ss_conf 01289961644203---46899998620453312467
Q gi|254780506|r 161 GQHAVVIGRSNLFG---KPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 161 Gk~vvVvGrs~~VG---~Pla~lL~~~~atVti~hs~ 194 (306)
|+.++++.....-- .-+..++..-||.+..+...
T Consensus 133 ~~~~il~p~~~~~~~~~~~~~~l~~~lGa~~~~m~~~ 169 (280)
T PRK07417 133 NRPWVLTPTENTDLAALATVEELAVSLGSKIYTADPA 169 (280)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 7539985688899999999999999849999999985
No 144
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.073 Score=33.82 Aligned_cols=44 Identities=5% Similarity=-0.037 Sum_probs=19.9
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH
Q ss_conf 999679867899999999999983970000247411122669999998
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLS 84 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~ 84 (306)
+++.+.+++. .+...+..++.|.++..+... =.+++++.+.+++
T Consensus 37 V~i~~~~~~~---l~~~~~~i~~~g~~~~~~~~D-v~~~~~v~~~v~~ 80 (263)
T PRK07814 37 VLIAARTESQ---LDEVAEQIRAAGRRAHVVAAD-LAHPEATAGLAGQ 80 (263)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCEEEEEECC-CCCHHHHHHHHHH
T ss_conf 9999698999---999999998529928999815-8999999999999
No 145
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=93.73 E-value=0.14 Score=31.77 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 72001289961644203468999986204533124676
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT 195 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T 195 (306)
+|+||+++|-|-|.=.|+-+|..|.++||+|+.|.++.
T Consensus 2 ~L~gK~alVTG~s~GIG~aia~~la~~GA~V~~~d~~~ 39 (261)
T PRK12428 2 RLDGKTIVVTGVASGIGAEVARLLRFLGARVIGLDRRP 39 (261)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89998899978577999999999998699999996885
No 146
>PRK09186 flagellin modification protein A; Provisional
Probab=93.73 E-value=0.072 Score=33.86 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=13.5
Q ss_pred HHCCCCEEECCCCCCC-CHHHHHHHHHHHCC-CCCCCEEE
Q ss_conf 9839700002474111-22669999998523-12212588
Q gi|254780506|r 58 KHCGFHSVQYNFPVDI-SQIDLENAVLSLNK-DDSIHGIL 95 (306)
Q Consensus 58 ~~lGI~~~~~~l~~~~-se~el~~~I~~LN~-d~~V~GIl 95 (306)
++-|..+..+. -|+ +++++.+.+++..+ --.+|+.+
T Consensus 50 ~~~~~~v~~~~--~Dvt~~~~v~~~~~~~~~~~g~id~lV 87 (255)
T PRK09186 50 TIEKTKLTLVE--LDITDQESLEEFLSKSQERYGKIDGAV 87 (255)
T ss_pred HHCCCEEEEEE--CCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 70598079998--468999999999999999819977899
No 147
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.085 Score=33.37 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=62.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9996798678999999999999839700002474111226699999985231-221258883468871137889860687
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIVP 115 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~p 115 (306)
+++.+-+... .+...+..++.|.++..+... =.+++++.+.+++..+. -.+| |+|-- . .+.+
T Consensus 34 Vvi~~~~~~~---~~~~~~~l~~~g~~~~~~~~D-v~~~~~~~~~~~~~~~~~g~iD-iLVNN---A---------G~~~ 96 (250)
T PRK12939 34 VAFNDGLAAE---ARELAAALEAAGGRAHAIAAD-LADPASVQRFFDAAAAALGGLD-GLVNN---A---------GITN 96 (250)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCEEEEEEEC-CCCHHHHHHHHHHHHHHCCCCC-EEEEC---C---------CCCC
T ss_conf 9999698899---999999999559909999924-8999999999999999749997-99988---7---------7899
Q ss_pred CCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCC
Q ss_conf 435132155338887304778875676679999999986787720012899616442034689-9998620453312467
Q gi|254780506|r 116 EKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSK 194 (306)
Q Consensus 116 ~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~ 194 (306)
.++++-+++...-+.+.-+....|. || .++...|+.- + .|.=|.+-.-+..+|.|-. .+-..+.|-. .-
T Consensus 97 ~~~~~~~~~e~~~~~~~iNl~~~~~-~~-k~~~~~m~~~-~---~G~IInisS~~~~~~~~~~~~Y~asKaal~----~l 166 (250)
T PRK12939 97 SKSATELDIDTWDAVMNVNVRGTFL-MS-RAALPHLRDS-G---RGRIVNLASDTALWGAPKLLAYVASKGAVI----GM 166 (250)
T ss_pred CCCCHHCCHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHC-C---CCEEEEECCHHHCCCCCCCHHHHHHHHHHH----HH
T ss_conf 9990349999999999998299999-99-9999999984-9---937999806776768998588999999999----99
Q ss_pred CCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 653477642235736522443212201047
Q gi|254780506|r 195 TKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 195 T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
|+.+......-.|-|-+| .|+++..++..
T Consensus 167 tk~lA~e~a~~~IrvN~V-~PG~i~T~~~~ 195 (250)
T PRK12939 167 TRSLARELGGRGITVNAI-APGLTATEATA 195 (250)
T ss_pred HHHHHHHHHHHCEEEEEE-EECCCCCHHHH
T ss_conf 999999960329399988-76779870322
No 148
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.65 E-value=0.079 Score=33.55 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCC-CCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHC-CEEEEECCCCCCCCCC
Q ss_conf 99999999867877200128996164-4203468-9999862045331246765347764223-5736522443212201
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRS-NLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTA-DILVVAVGRPRMVQVD 221 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs-~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~A-DivIsAvG~p~~i~~~ 221 (306)
.+++..|++. + +-+++.++-. ...+.|- +.+-..|.|- +.-|+.+....... +|=|.++- |+++..+
T Consensus 128 ~~~~p~m~~~-~----~g~Ii~isS~~~~~~~~~~~~Y~asKaal----~~ltk~lA~E~~~~g~IrVN~i~-PG~i~T~ 197 (239)
T PRK08703 128 RALFPLLKQS-P----DASVIFVGESHGETPKAYWGGFGASKAAL----NYLCKVAADEWERFGNLRANVLV-PGPINSP 197 (239)
T ss_pred HHHHHHHHHC-C----CEEEEEEECHHHCCCCCCCHHHHHHHHHH----HHHHHHHHHHHCCCCCEEEEEEE-ECCCCCC
T ss_conf 9999999877-9----90899981445477898866899999999----99999999984789898999998-4889796
Q ss_pred CC
Q ss_conf 04
Q gi|254780506|r 222 WI 223 (306)
Q Consensus 222 ~v 223 (306)
|.
T Consensus 198 ~~ 199 (239)
T PRK08703 198 QR 199 (239)
T ss_pred CH
T ss_conf 81
No 149
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.63 E-value=0.21 Score=30.68 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHH----HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEE-ECCCCC-------CCHH------
Q ss_conf 75676679999999----98678772001289961644203468999986204533-124676-------5347------
Q gi|254780506|r 138 GLVPCTPAGAILLI----EQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVT-MAHSKT-------KNLP------ 199 (306)
Q Consensus 138 ~~~PcTp~av~~ll----~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVt-i~hs~T-------~~l~------ 199 (306)
+..-+|..|++..+ ++ .+.+++||+++|-|-++ ||.-+|.+|.+.||.|. +..+.. -|++
T Consensus 5 gR~eATG~Gv~~~~~~~l~~-~~~~l~g~~v~IqG~Gn-VG~~~a~~L~~~Gakvv~vsD~~G~i~~~~Gld~~~l~~~~ 82 (227)
T cd01076 5 GREEATGRGVAYATREALKK-LGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYK 82 (227)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHH
T ss_conf 99733288999999999997-69897899999989889-99999999998799599998478738888889999999999
Q ss_pred -------------------HHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf -------------------7642235736522443212201047
Q gi|254780506|r 200 -------------------EICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 200 -------------------~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
-+...+||++-| ...+.|+.+-.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~DI~iP~-A~~~~I~~~~a~ 125 (227)
T cd01076 83 KEHGSVLGFPGAERITNEELLELDCDILIPA-ALENQITADNAD 125 (227)
T ss_pred HHCCCCCCCCCCCCCCCCCHHCCCCCEEEEC-CCCCCCCHHHHH
T ss_conf 9659802678875389623104788789877-766977999985
No 150
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.081 Score=33.48 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 46765347764223573652244321220104
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
+..|+.+......-.|-|-++ .|+++..+|.
T Consensus 166 ~~ltr~lA~ela~~gIrVN~V-~PG~i~T~~~ 196 (252)
T PRK07035 166 ISMTKAFAKECAPFGIRVNAL-LPGLTDTKFA 196 (252)
T ss_pred HHHHHHHHHHHHHHCEEEEEE-EECCCCCHHH
T ss_conf 999999999860329599999-6287887424
No 151
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.58 E-value=0.086 Score=33.31 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCCEEEEECCCCCCHHHHH---HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 0012899616442034689---99986204533124676534776422357365224432122010476
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMG---QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla---~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+|..+++++-+.-..+|.. .+-..+.|-. ..|+.+......--|-|-|+ .|+++..+|..+
T Consensus 127 ~g~~ii~iss~~~~~~~~~~~~~Y~asKaal~----~ltk~lA~ela~~gIrVN~I-aPG~i~t~~~~~ 190 (238)
T PRK05786 127 EGSSIVLVSSIRGIYKAWPRQLSYAAAKAGLA----KAVEILAAELLDRGIRVNGV-APSGIDGDFVPG 190 (238)
T ss_pred HCCEEEEEECHHHCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCC
T ss_conf 16779999644541678986178999999999----99999999964179599999-628899888777
No 152
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.57 E-value=0.082 Score=33.45 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 67653477642235736522443212201047
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
..|+.+........|-|-++- |+++..+|.+
T Consensus 163 ~lt~~lA~el~~~gIrVN~I~-PG~v~T~~~~ 193 (250)
T PRK07231 163 TATKSLAVELAPDNIRVNAVN-PVVGETGLLE 193 (250)
T ss_pred HHHHHHHHHHHHCCEEEEEEE-ECCCCCHHHH
T ss_conf 999999999534095999996-3879863777
No 153
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.57 E-value=0.75 Score=26.78 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=98.6
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHH----HCCCCC----EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH
Q ss_conf 005389999999999999999998----369997----599999679867899999999999983970000247411122
Q gi|254780506|r 4 LIDGKVVASVLTDKIAESVAFLKK----ETGVQV----GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQ 75 (306)
Q Consensus 4 iLdGk~iA~~i~~~lk~~i~~l~~----~~g~~P----~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se 75 (306)
+|+-+.++..=.+.|-+....+++ +....+ +....++ ..|..++-+. =+-++.++|..+.. +..+.++
T Consensus 8 ~L~l~dls~~ei~~ll~~A~~~~~~~~~~~~~~~~L~gk~la~lF-~kpSTRTR~S-FE~a~~~LGg~~i~--l~~~~s~ 83 (310)
T PRK13814 8 LLNMRSLTRDHIEKLIQRANYFLTQGMEKNSVFETLKGHVVANLF-FEPSTRTRNS-FEIAAKRLGAMVLN--PNLKISA 83 (310)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-ECCCCCHHHH-HHHHHHHCCCCCCC--CCCCCCC
T ss_conf 375321999999999999999998664147777667999899998-4687324999-99999984998057--6644354
Q ss_pred ----HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHH
Q ss_conf ----66999999852312212588834688711378898606874351321553388873047788756766799-9999
Q gi|254780506|r 76 ----IDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILL 150 (306)
Q Consensus 76 ----~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~l 150 (306)
+-+.+.++-|+.= .++.|++-.+-...+ ..+....+.- -+.|. |+ .....||-+++ ++++
T Consensus 84 l~kgEsi~DTa~vls~~-~~d~iv~R~~~~~~~--~~la~~~s~~------pvINa-----g~-~~~~HP~QaLaDl~Ti 148 (310)
T PRK13814 84 ISKGETLFDTIKTLEAM-GVYFFIVRHSENETP--EQIAKQLSSG------VVINA-----GD-GNHQHPSQALIDLMTI 148 (310)
T ss_pred CCCCCCHHHHHHHHHHC-CCEEEEEECCCCCHH--HHHHHHCCCC------CEEEC-----CC-CCCCCCHHHHHHHHHH
T ss_conf 55797789999998741-856999976874489--9999717888------74768-----78-9877716999989999
Q ss_pred HHHHCCCCCCCCEEEEECC--CCCCHHHHHHHHHHHCC-CEEECCCCC--------------CCHHHHHHHCCEEEE
Q ss_conf 9986787720012899616--44203468999986204-533124676--------------534776422357365
Q gi|254780506|r 151 IEQFKGCDLSGQHAVVIGR--SNLFGKPMGQLLLSRNA-TVTMAHSKT--------------KNLPEICRTADILVV 210 (306)
Q Consensus 151 l~~y~~i~l~Gk~vvVvGr--s~~VG~Pla~lL~~~~a-tVti~hs~T--------------~~l~~~~~~ADivIs 210 (306)
.++ .| +++|++++.+|. ...|..-+..++..-|+ .+.+|.... .++.+.+..||++++
T Consensus 149 ~E~-~g-~~~~l~ia~vGD~~~~~va~Sl~~~~~~~g~~~~~~~~P~~~~p~~~~~~~~~~~~~~~~a~~~aDvi~t 223 (310)
T PRK13814 149 KQH-KP-HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred HHH-CC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHCCHHHCCCCEEEEECCHHHHCCCCEEEE
T ss_conf 998-39-7135668996774246999999999997599835852800219166708854998141676547987997
No 154
>PRK09414 glutamate dehydrogenase; Provisional
Probab=93.53 E-value=0.56 Score=27.69 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=56.1
Q ss_pred HHHHHHCCCCCCHHH----CCHHHHHHHHH--------------CC-----CCCCCCCCCHHHHHH----HHHHHCCCCC
Q ss_conf 889860687435132----15533888730--------------47-----788756766799999----9998678772
Q gi|254780506|r 107 QSIIQSIVPEKDVDG----LHVVNAGKVMI--------------GD-----FTTGLVPCTPAGAIL----LIEQFKGCDL 159 (306)
Q Consensus 107 ~~i~~~I~p~KDVDG----l~~~N~g~l~~--------------~~-----~~~~~~PcTp~av~~----ll~~y~~i~l 159 (306)
.++...|-|++||=+ .++.-+|.|+- |. -+.+..-+|-.|++. +|++ .+.++
T Consensus 149 ~eL~~~IGp~~DVPApDigt~~rem~wm~d~Y~~i~~~~~gv~TGKp~~~GGs~gR~eATG~Gv~y~~~e~l~~-~g~~l 227 (446)
T PRK09414 149 TELYRHIGPDTDVPAGDIGVGGREIGYMFGQYKRLTNRFEGVLTGKGLSFGGSLIRPEATGYGLVYFAEEMLKA-RGDSF 227 (446)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCC
T ss_conf 99998609766987865787788999999999985498773568997210688687653228999999999997-49995
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC
Q ss_conf 00128996164420346899998620453312
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMA 191 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~ 191 (306)
+||+|+|-|-++ ||.-.|..|.+.||+|.-+
T Consensus 228 ~gk~v~IqGfGN-Vg~~aA~~l~e~GakvVav 258 (446)
T PRK09414 228 EGKTVVVSGSGN-VAIYAIEKAMELGAKVVTC 258 (446)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
T ss_conf 788799977777-9999999999769979999
No 155
>PRK08945 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.079 Score=33.57 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 46765347764223573652244321220104
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
+..|+.+......-.|-|.++ .|+++..+|.
T Consensus 174 ~~lt~~la~El~~~gIrVN~I-~PG~v~T~m~ 204 (245)
T PRK08945 174 EGMMQVLADEYQGTNLRVNCI-NPGATRTAMR 204 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEE-EECCCCCHHH
T ss_conf 999999999857568499999-7288877414
No 156
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.087 Score=33.30 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=23.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCC-CCCCCEEE
Q ss_conf 9996798678999999999999839700002474111-22669999998523-12212588
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNK-DDSIHGIL 95 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~-d~~V~GIl 95 (306)
+++.+-+++...-...+.+....-+-.+.. ++.|+ +++++.+.+++..+ -..+|+++
T Consensus 34 Vii~~r~~~~l~~~~~~l~~~~~~~~~v~~--~~~Dvs~~~~v~~~v~~~~~~~g~iD~LV 92 (277)
T PRK05875 34 VMIVGRNPDKLAAAAEEIEALAGGAGAVRY--EPADVTNEDEVARAVDAATAWHGRLHGVV 92 (277)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCEEEE--EECCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999979889999999999961278862899--95789999999999999999849953999
No 157
>PRK06720 hypothetical protein; Provisional
Probab=93.47 E-value=0.091 Score=33.15 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=42.9
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHH
Q ss_conf 999986787720012899616442034689999862045331246765347764
Q gi|254780506|r 149 LLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEIC 202 (306)
Q Consensus 149 ~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~ 202 (306)
+||+-.-..+|+||.++|-|-+.=.|+-+|..|.++||.|.++.+....+++..
T Consensus 4 ~~~~~~M~~~L~gKvalITGa~~GIG~a~A~~la~~Ga~Vvi~d~~~~~~~~~~ 57 (169)
T PRK06720 4 RLIEGVMKMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATV 57 (169)
T ss_pred EHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 042152868629999999897548999999999986998999527636599999
No 158
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.092 Score=33.13 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 999999998678772001289961-644203468-999986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.+++..++.- + .|..++.+. -+...|.|- +.+-..|.|-+ .-|+.+....-.-.|-|-|+ .|+++..+|
T Consensus 127 ~~~~p~m~~~-~---~G~~IinisS~~~~~~~~~~~~Y~asKaal~----~ltr~lA~E~a~~gIrVNaV-~PG~i~T~~ 197 (264)
T PRK12829 127 RAAVPLLRAS-G---HGGVIIALSSVAGRLGYPGRTPYAASKWAVV----GLVKSLAIELGPLGIRVNAI-LPGIVRGPR 197 (264)
T ss_pred HHHHHHHHHC-C---CCCEEEEEECHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHCEEEEEE-EECCCCCCH
T ss_conf 9999999873-9---9808999802654779988678999999999----99999999985409499988-628888802
Q ss_pred CC
Q ss_conf 47
Q gi|254780506|r 223 IK 224 (306)
Q Consensus 223 vk 224 (306)
.+
T Consensus 198 ~~ 199 (264)
T PRK12829 198 MR 199 (264)
T ss_pred HH
T ss_conf 54
No 159
>PRK12742 oxidoreductase; Provisional
Probab=93.46 E-value=0.1 Score=32.72 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=29.5
Q ss_pred CCEEEEECCC--CCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 0128996164--420346-8999986204533124676534776422357365224432122010476
Q gi|254780506|r 161 GQHAVVIGRS--NLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 161 Gk~vvVvGrs--~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+-+++.++-. ..++.| .+.+-..|.|-.. -|+.+......-.|-|-++ .|+++..+|...
T Consensus 124 ~G~ii~i~S~~~~~~~~~~~~~Y~asKaal~~----ltk~lA~ela~~gIrVNaI-aPG~i~T~~~~~ 186 (237)
T PRK12742 124 GGRILIIGSVNGDRMPVAGMAAYAASKSALQG----MARGLARDFGPRGITINVV-QPGPIDTDANPA 186 (237)
T ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCCCEEEEEE-EECCCCCCCCCC
T ss_conf 78599999530023688860788999999999----9999999974029799999-627888888867
No 160
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=93.44 E-value=0.091 Score=33.15 Aligned_cols=160 Identities=11% Similarity=0.134 Sum_probs=61.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9996798678999999999999839700002474111226699999985231-221258883468871137889860687
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIVP 115 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~p 115 (306)
+++.+-+.... +...+..++.|.++..+.. +-++++++.+.+++.-+. -.+|..+-=-=+...- -+.-+++
T Consensus 37 Vii~~~~~~~~---~~~~~~~~~~g~~~~~~~~-Dvt~~~~v~~~~~~~~~~~g~iDiLVnNAG~~~~~----~~~~~~~ 108 (265)
T PRK07097 37 IVFNDIKQELV---DKGLAAYRELGIEAHGYVC-DVTDEDGIQAMVAQIEKEVGVIDILVNNAGIIRRI----PMLEMSA 108 (265)
T ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC----CHHHCCH
T ss_conf 99995998999---9999999954991799993-28999999999999999829998999899899998----8265999
Q ss_pred CCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCC
Q ss_conf 435132155338887304778875676679999999986787720012899616442034689-9998620453312467
Q gi|254780506|r 116 EKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSK 194 (306)
Q Consensus 116 ~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~ 194 (306)
+ |-|-.-..| ....|. || .+++..+.+- + .|.=|-|-.-+...|.|-. .+-..|.|.+. -
T Consensus 109 e-~~~~~~~vN--------l~g~~~-~~-~~~~~~m~~~-~---~G~IVnisS~~~~~~~~~~~~Y~asKaav~~----l 169 (265)
T PRK07097 109 E-DFRQVIDID--------LNAPFI-VS-KAVLPSMIKK-G---HGKIINICSMMSELGRETVSAYAAAKGGLKM----L 169 (265)
T ss_pred H-HHHHHHHHH--------HHHHHH-HH-HHHHHHHHHH-C---CCEEEEEECHHHCCCCCCCHHHHHHHHHHHH----H
T ss_conf 9-999999986--------072899-99-9999989980-8---9759999052115678886689999999999----9
Q ss_pred CCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 653477642235736522443212201047
Q gi|254780506|r 195 TKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 195 T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
|+.+.....+--|-|-++ .|+++..++.+
T Consensus 170 tr~lA~e~a~~gIrVN~V-~PG~i~T~~~~ 198 (265)
T PRK07097 170 TKNIASEYGEANIQCNGI-GPGYIATPQTA 198 (265)
T ss_pred HHHHHHHHHHCCEEEEEE-EECCCCCCCCH
T ss_conf 999999970249599999-65889886304
No 161
>PRK07776 consensus
Probab=93.43 E-value=0.098 Score=32.92 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 67653477642235736522443212201047
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+-|+.+...... +|=|-++ .|+++..+|.+
T Consensus 165 ~ltk~lA~e~a~-~IrVN~V-~PG~i~T~~~~ 194 (252)
T PRK07776 165 HLTKQLALELAP-RVRVNAV-APGVVRTKFAE 194 (252)
T ss_pred HHHHHHHHHHCC-CCEEEEE-EECCCCCCCHH
T ss_conf 999999999869-9889999-64579885411
No 162
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.097 Score=32.96 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=26.3
Q ss_pred EEEECCCCCC---HHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 8996164420---3468-9999862045331246765347764223573652244321220104
Q gi|254780506|r 164 AVVIGRSNLF---GKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 164 vvVvGrs~~V---G~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
-.||+-|.+. |.|- +.+-..+.|-. ..|+.+........|-|-|+. |+++..+|.
T Consensus 130 G~IInisS~~~~~~~~~~~~Y~asKaav~----~ltkslA~el~~~gIRVN~I~-PG~i~T~~~ 188 (245)
T PRK07060 130 GSIVNVSSQAALVGLPDHLAYCASKAALD----AATRVLCVELGPHGIRVNSVN-PTVTLTPMA 188 (245)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEEE-ECCCCCHHH
T ss_conf 07999866432578997478999999999----999999999610192999997-698987667
No 163
>PRK08862 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.095 Score=33.02 Aligned_cols=155 Identities=18% Similarity=0.159 Sum_probs=67.1
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCC-CCCEEEE----ECCCCCCHHHHHHHH
Q ss_conf 99967986789999999999998397000024741112266999999852312-2125888----346887113788986
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDD-SIHGILV----QLPLPSTVSEQSIIQ 111 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~-~V~GIlv----QlPLP~~id~~~i~~ 111 (306)
+++.+-|+.+. +...+.+++.|-++..+.... .+++++.+.+++..+.- ....|+| ..|+|..+++...
T Consensus 32 Vii~~r~~~~l---~~~~~~i~~~g~~~~~~~~d~-~~~~~v~~~~~~i~~~~g~~iDvLVNNa~~~~~~~~~~~~~~-- 105 (227)
T PRK08862 32 LILCDQDQSAL---NDTYEQCSALTDNVYSYQLKD-FSQESIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPS-- 105 (227)
T ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEECC-CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCH--
T ss_conf 99996999999---999999997589748999516-619999999999999958997499856645778863345889--
Q ss_pred HCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC
Q ss_conf 06874351321553388873047788756766799999999867877200128996164420346899998620453312
Q gi|254780506|r 112 SIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMA 191 (306)
Q Consensus 112 ~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~ 191 (306)
+...+-+ ..|++. +.-|+ ..+...+.... -.|.=+-+...+.. .+++.+-..+.| .
T Consensus 106 ----~~~~~~~-~~~~~~---------~~~~~-~~~~~~m~~~~---~~G~IINi~S~~~~--~~~~~y~asKaa----v 161 (227)
T PRK08862 106 ----ESFIQQL-TSLAST---------LFTYG-QVAAERMRKRK---KKGVIVNVISHDDH--QDLTGVESSTAL----V 161 (227)
T ss_pred ----HHHHHHH-HHHHHH---------HHHHH-HHHHHHHHHCC---CCEEEEEEEEECCC--CCCHHHHHHHHH----H
T ss_conf ----9999999-986569---------99999-99999999669---98799999768766--882789999999----9
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 4676534776422357365224432122010
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
...|+.+......-.|=|-|+ .|+++..+|
T Consensus 162 ~~lTkslA~Ela~~gIRVNaV-aPG~i~Te~ 191 (227)
T PRK08862 162 SGFTHSWAKELTPFNIRVGGV-VPSIFNAEG 191 (227)
T ss_pred HHHHHHHHHHHHHHCCEEEEE-ECCEECCCC
T ss_conf 999999999976749899999-438088798
No 164
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.34 E-value=0.11 Score=32.55 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=27.5
Q ss_pred EEEEEC-CCCCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 289961-64420346-899998620453312467653477642235736522443212201047
Q gi|254780506|r 163 HAVVIG-RSNLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 163 ~vvVvG-rs~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+++.++ -+...|.| .+.+-..+.|... .|+.+.....+-.|-|-++ .|+++..+|.+
T Consensus 138 ~II~isS~~~~~~~~~~~~Y~~sK~Al~~----l~~~la~e~~~~gIrvN~I-~PG~v~T~~~~ 196 (250)
T PRK12825 138 RIVNISSVAGLKGNPGQVNYAAAKAGLVG----LTKALARELAERGIRVNAV-APGAIDTEMIE 196 (250)
T ss_pred EEEEEECHHHCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHCEEEEEE-EECCCCCCCCC
T ss_conf 39999145555789996778999999999----9999999860429299999-72888770321
No 165
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.32 E-value=0.25 Score=30.15 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=8.0
Q ss_pred EEECCCCCCHHHHHHHHHHH
Q ss_conf 99616442034689999862
Q gi|254780506|r 165 VVIGRSNLFGKPMGQLLLSR 184 (306)
Q Consensus 165 vVvGrs~~VG~Pla~lL~~~ 184 (306)
-|||-....|+=++.+|.++
T Consensus 8 ~iiG~~~~~G~w~a~flr~~ 27 (373)
T PRK08818 8 GIVGIAGAYGRWLAQFLRTR 27 (373)
T ss_pred EEEECCCHHHHHHHHHHHHC
T ss_conf 99626632658999998743
No 166
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.30 E-value=0.095 Score=33.00 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 4203468-9999862045331246765347764223573652244321220104
Q gi|254780506|r 171 NLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 171 ~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
-..|.|- +.+-..+.|-+ ..|+.+......-.|-|-++ .|++++.+|.
T Consensus 142 ~~~~~~~~~~Y~asKaai~----~ltrslA~ela~~gIrVN~I-aPG~i~T~~~ 190 (245)
T PRK12936 142 GVTGNPGQANYCASKAGMI----GFSKSLAQEIATRNVTVNCV-APGFIESAMT 190 (245)
T ss_pred HCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHCEEEEEE-EECCCCCCCC
T ss_conf 3568998589999999999----99999999970529299999-7576886310
No 167
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.16 Score=31.44 Aligned_cols=59 Identities=25% Similarity=0.401 Sum_probs=46.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEE-CCCCC---------------------CCHHHHHHHCCEEEEECCC
Q ss_conf 7720012899616442034689999862045331-24676---------------------5347764223573652244
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTM-AHSKT---------------------KNLPEICRTADILVVAVGR 214 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti-~hs~T---------------------~~l~~~~~~ADivIsAvG~ 214 (306)
-...||+|.|-|.|.-.|+-|...|.++||.|+- .|++. ..|.+..+..||+|-.-|.
T Consensus 13 ~~~kgKtIgITGAsGaLG~AL~k~f~~~GakVIalTh~~~~~~~~~~~~p~~wi~W~cG~E~~L~~~LkkiDILILNHGI 92 (250)
T PRK12367 13 SRWNGKRIGITGASGALGKALTKLFRAKGAKVIGLTHSKINNSEISDESPNEWVSWECGKESSLDKTLAKIDVLILNHGI 92 (250)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCCC
T ss_conf 56389879996787389999999999889989998368888754556789528984349989999998758899983877
Q ss_pred C
Q ss_conf 3
Q gi|254780506|r 215 P 215 (306)
Q Consensus 215 p 215 (306)
-
T Consensus 93 n 93 (250)
T PRK12367 93 N 93 (250)
T ss_pred C
T ss_conf 7
No 168
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.24 E-value=0.18 Score=31.15 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=7.5
Q ss_pred CEEEEECCCCCCHH
Q ss_conf 25888346887113
Q gi|254780506|r 92 HGILVQLPLPSTVS 105 (306)
Q Consensus 92 ~GIlvQlPLP~~id 105 (306)
+=|++.+|=++..+
T Consensus 61 ~vI~~~vp~g~~v~ 74 (298)
T PRK12490 61 RAIWVMVPAGEVTE 74 (298)
T ss_pred CEEEEECCCCHHHH
T ss_conf 88999768945599
No 169
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.22 E-value=0.38 Score=28.83 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=48.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC--------CHHH-----------------------------
Q ss_conf 720012899616442034689999862045331246765--------3477-----------------------------
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK--------NLPE----------------------------- 200 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~--------~l~~----------------------------- 200 (306)
.-..|+++|||.+. +|--+|..|.+.|..||+.+.... ++.+
T Consensus 146 ~~~~k~vvViGgG~-ig~E~A~~l~~~G~~Vtiv~~~~~~l~~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~ 224 (443)
T PRK09564 146 KKEIKRIVIIGAGF-IGLEVVEAAKKLGKNVRIIQLEKRILPDSFDKEITDVMEEELREKGVELHTSEFVKSLIGEDKVE 224 (443)
T ss_pred HCCCCEEEEECCHH-HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEE
T ss_conf 12796599999709-99999999986698899999578345566789999999999997797999899899999269899
Q ss_pred ------HHHHCCEEEEECCC-CCC--CCCC--CCCCCCEEEE
Q ss_conf ------64223573652244-321--2201--0476626998
Q gi|254780506|r 201 ------ICRTADILVVAVGR-PRM--VQVD--WIKTGSLVID 231 (306)
Q Consensus 201 ------~~~~ADivIsAvG~-p~~--i~~~--~vk~gavvID 231 (306)
-.-.+|.|+.|+|+ |+. +... ..+.|.+++|
T Consensus 225 ~v~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~g~I~Vd 266 (443)
T PRK09564 225 GVVTNKGEYEADVVILSTGIKPNTEFLEDQLKTLKNGAIIVD 266 (443)
T ss_pred EEEECCCEEEEEEEEECCCCCCCHHHHHCCCEECCCCEEEEC
T ss_conf 999779889723899955885350787628420349979868
No 170
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=93.18 E-value=0.13 Score=32.10 Aligned_cols=49 Identities=18% Similarity=0.034 Sum_probs=25.7
Q ss_pred CCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 203468-999986204533124676534776422357365224432122010476
Q gi|254780506|r 172 LFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 172 ~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.++.|- +.+-..+.|-. .-|+.+....-.-.|=|-++- |+++..+|.+.
T Consensus 156 ~~~~~~~~~Y~asKaal~----~ltr~lA~ela~~gIrVN~I~-PG~i~T~~~~~ 205 (260)
T PRK08416 156 LVYIENYAGHGTSKAAVE----AMVRYAATELGEKNIRVNAVS-GGPIDTDALKA 205 (260)
T ss_pred CCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEEE-ECCCCCHHHHC
T ss_conf 667985177898888999----999999999845595999997-37798666651
No 171
>PRK12744 short chain dehydrogenase; Provisional
Probab=93.11 E-value=0.15 Score=31.56 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 999862045331246765347764223573652244321220104
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+-..+.|- +..|+.+......-.|-|-++ .|+++..+|+
T Consensus 158 ~Y~asKaav----~~ltr~lA~ela~~gIrVNaV-aPG~i~T~~~ 197 (257)
T PRK12744 158 AYAGSKAPV----EHFTRAASKEFGARGISVTAV-GPGPMDTPFF 197 (257)
T ss_pred HHHHHHHHH----HHHHHHHHHHHCCCCEEEEEE-EECCCCCCCC
T ss_conf 899999999----999999999965449699999-6388987765
No 172
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.11 E-value=0.14 Score=31.85 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=20.6
Q ss_pred HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9999862045331246765347764223573652244321220104
Q gi|254780506|r 178 GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 178 a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
+.+-..|.|-+. -|+.+....-.-.|=|-++ .|+++..+|.
T Consensus 166 ~~Y~asKaav~~----lTr~lA~e~a~~gIrVNaI-aPG~i~T~~~ 206 (262)
T PRK06114 166 AHYNASKAGVIH----MSKSLAMEWVGRGIRVNTI-SPGYTATPMN 206 (262)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHCCCCEEEEEE-EECCCCCCCC
T ss_conf 889999999999----9999999967059399999-7588988766
No 173
>PRK09242 tropinone reductase; Provisional
Probab=93.11 E-value=0.11 Score=32.58 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 7653477642235736522443212201047
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.|+.+......-.|-|-++ .|+++..+|.+
T Consensus 171 ltr~lA~ela~~gIrVN~V-~PG~i~T~~~~ 200 (258)
T PRK09242 171 MTRNLAVEWAEDGIRVNAV-APWYIRTRRTS 200 (258)
T ss_pred HHHHHHHHHHCCCEEEEEE-EECCCCCHHHH
T ss_conf 9999999980279899998-35889872120
No 174
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.12 Score=32.31 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=62.4
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEE----EE--C-CCCCCHHHH
Q ss_conf 9996798678999999999999839700002474111-226699999985231-2212588----83--4-688711378
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGIL----VQ--L-PLPSTVSEQ 107 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIl----vQ--l-PLP~~id~~ 107 (306)
++..+-+++. .+...+.+++.|.+...+.. |+ +++++.+.+++.-+. -.+|..+ +. . |+ ..++++
T Consensus 34 V~i~~~~~~~---~~~~~~~~~~~g~~~~~~~~--Dvs~~~~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~-~~~~~e 107 (253)
T PRK06172 34 VVVADRDAAG---GEETVALIREAGGEALFIAC--DVTRDAEVKALVEKTIAAYGRLDYAFNNAGIEIEQGRL-AEGSEA 107 (253)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC-HHCCHH
T ss_conf 9999798899---99999999964993799981--89999999999999999829999999898889999990-139999
Q ss_pred HHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CHHHH-HHHHHH
Q ss_conf 89860687435132155338887304778875676679999999986787720012899616442---03468-999986
Q gi|254780506|r 108 SIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNL---FGKPM-GQLLLS 183 (306)
Q Consensus 108 ~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~---VG~Pl-a~lL~~ 183 (306)
|-|-.-..|+-. .|+ |+ .+++..+.. .+ .| .||+-|.+ .|.|- +.+-..
T Consensus 108 ----------~w~~~~~vNl~g--------~~~-~~-~~~~~~m~~-~~---~G---~IVnisS~~g~~~~~~~~~Y~as 160 (253)
T PRK06172 108 ----------EFDAIMGVNVKG--------VWL-CM-KYQIPLMLA-QG---GG---AIVNTASVAGLGAAPKMSIYAAS 160 (253)
T ss_pred ----------HHHHHHHHHHHH--------HHH-HH-HHHHHHHHH-CC---CE---EEEEECCHHHCCCCCCCHHHHHH
T ss_conf ----------999999997399--------999-99-999999998-59---95---89997666647689997789999
Q ss_pred HCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 20453312467653477642235736522443212201047
Q gi|254780506|r 184 RNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 184 ~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
|+|-+ .-|+.+........|=|-++ .|+++..+|.+
T Consensus 161 Kaal~----~ltr~lA~e~a~~gIrVNaV-~PG~i~T~~~~ 196 (253)
T PRK06172 161 KHAVI----GLTKSAAIEYAKKGIRVNAV-CPAVIDTDMFR 196 (253)
T ss_pred HHHHH----HHHHHHHHHHHHHCCEEEEE-EECCCCCHHHH
T ss_conf 99999----99999999863318789999-77979875776
No 175
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.03 E-value=0.11 Score=32.55 Aligned_cols=156 Identities=14% Similarity=0.164 Sum_probs=64.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9996798678999999999999839700002474111-226699999985231-22125888346887113788986068
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIV 114 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~ 114 (306)
+++.+.+++. -.+.+++++-....+.+ |+ +++++.+.+++.-+. -.+|. +|--- ++....-+.-++
T Consensus 36 Vvi~~r~~~~------l~~~~~~l~~~~~~~~~--Dvtd~~~v~~~v~~~~~~~G~iDi-LVNNA---G~~~~~~~~~~~ 103 (251)
T PRK07523 36 VILNGRDAAK------LAAAAESLKGSAHTLAF--DVTDHDAVRAAIDAFEAEIGPIDI-LVNNA---GMQHRTPLEDFP 103 (251)
T ss_pred EEEEECCHHH------HHHHHHHCCCCCEEEEE--ECCCHHHHHHHHHHHHHHCCCCCE-EEECC---CCCCCCCHHHCC
T ss_conf 9999699899------99999981887279999--579999999999999997599869-99898---879999905599
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCC
Q ss_conf 743513215533888730477887567667999999998678772001289961644203468-9999862045331246
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHS 193 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs 193 (306)
. .|-|-.-..|+- ..|. |+ .++...+..- + .|.=|-|---+...|.|- +.+-..|.|-. .
T Consensus 104 ~-e~~~~~~~vNl~--------~~f~-~~-~~~~~~m~~~-~---~G~IInisS~~~~~~~~~~~~Y~asKaav~----~ 164 (251)
T PRK07523 104 A-DAFERLLQTNIS--------SVFY-VG-QAVARHMIAR-G---AGKIINIASVQSALARPGIAPYTATKGAVG----N 164 (251)
T ss_pred H-HHHHHHHHHHHH--------HHHH-HH-HHHHHHHHHC-C---CCEEEEEEEHHHCCCCCCCHHHHHHHHHHH----H
T ss_conf 9-999999999739--------9999-99-9998998863-9---967999941576076899478999999999----9
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 7653477642235736522443212201047
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
-|+.+......-.|-|-++. |+++..+|.+
T Consensus 165 lTr~lA~e~a~~gIrVNaVa-PG~i~T~~~~ 194 (251)
T PRK07523 165 LTKGMATDWAKHGLQCNAIA-PGYFDTPLNA 194 (251)
T ss_pred HHHHHHHHHCCCCEEEEEEE-ECCCCCHHHH
T ss_conf 99999999702094999997-3789873243
No 176
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.01 E-value=0.13 Score=32.01 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=57.4
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHH
Q ss_conf 999999999839700002474111-226699999985231-221258883468871137889860687435132155338
Q gi|254780506|r 50 VSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNA 127 (306)
Q Consensus 50 v~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~ 127 (306)
.+...+.+++.|.++..+.. |. +++++.+.+++..+. ..+|.++----....- . +.-+++ +|.+-.-..|+
T Consensus 43 ~~~~~~~l~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~~g~iD~lVnnAg~~~~~---~-~~~~~~-~~~~~~~~~Nl 115 (247)
T PRK05565 43 ANELLEEIKEVGGDAIAVKA--DVSSEDDVENLVEQIVEKFGKIDILVNNAGISKFG---L-VTDMTD-EEWDRVINVNL 115 (247)
T ss_pred HHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC---C-HHHCCH-HHHHHHHHHHH
T ss_conf 99999999963990899983--58999999999999999809984999899878999---9-155999-99999999854
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHC
Q ss_conf 88730477887567667999999998678772001289961-644203468-9999862045331246765347764223
Q gi|254780506|r 128 GKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTA 205 (306)
Q Consensus 128 g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~A 205 (306)
- ..| -++ .+++..++.. .+-+++.++ .+-..|.|- +.+-..+.|- +..|+.+......-
T Consensus 116 ~--------~~~-~~~-~~~~~~m~~~-----~~G~II~isS~~~~~~~~~~~~Y~asKaal----~~ltr~lA~e~~~~ 176 (247)
T PRK05565 116 T--------GVM-RLT-RYALPIMIKR-----GSGVIVNISSIWGLIGASCEVLYSASKGAV----NAFTKALAKELAPS 176 (247)
T ss_pred H--------HHH-HHH-HHHHHHHHHC-----CCCEEEEECCHHHCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_conf 7--------899-999-9857988756-----997599973512257899833889999999----99999999995430
Q ss_pred CEEEEECCCCCCCCCCCCC
Q ss_conf 5736522443212201047
Q gi|254780506|r 206 DILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 206 DivIsAvG~p~~i~~~~vk 224 (306)
.|-|-++- |+++..+|.+
T Consensus 177 gIrvN~V~-PG~~~T~~~~ 194 (247)
T PRK05565 177 GIRVNAIA-PGAIETEMNS 194 (247)
T ss_pred CEEEEEEE-ECCCCCCCCC
T ss_conf 94999996-0989574210
No 177
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.00 E-value=0.15 Score=31.67 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 67653477642235736522443212201047
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
..|+.+......-.|-|.++ .|+++..+|.+
T Consensus 164 ~lt~~lA~e~~~~gIrvN~V-~PG~i~T~~~~ 194 (248)
T PRK05557 164 GFTKSLARELASRGITVNAV-APGFIETDMTD 194 (248)
T ss_pred HHHHHHHHHHHHHCEEEEEE-EECCCCCCCCC
T ss_conf 99999999853319499999-74888775421
No 178
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.11 Score=32.54 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECC-CCCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 9999999986787720012899616-4420346-8999986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGR-SNLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGr-s~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.+++..|+.- .| .++.++- +...+.| .+.+-..+.|.. ..|+.+......-.|=|-++ .|+++..++
T Consensus 123 k~~~p~m~~~-----~G-~IVnisS~~~~~~~~~~~~Y~~sKaal~----~ltk~lA~ela~~gIrVN~V-~PG~i~t~~ 191 (258)
T PRK07890 123 QAFTPALAES-----GG-SVVMINSMVLRHSQPKYGAYKMAKGALL----AASQSLATELGPQGIRVNSV-APGYIWGDP 191 (258)
T ss_pred HHHHHHHHHC-----CC-EEEEEECHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHCEEEEEE-EECCCCCCC
T ss_conf 9889999976-----98-5999825654888999778999999999----99999999971409599999-518788752
Q ss_pred C
Q ss_conf 4
Q gi|254780506|r 223 I 223 (306)
Q Consensus 223 v 223 (306)
.
T Consensus 192 ~ 192 (258)
T PRK07890 192 L 192 (258)
T ss_pred H
T ss_conf 5
No 179
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=92.90 E-value=0.13 Score=32.02 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 99998620453312467653477642235736522443212201047
Q gi|254780506|r 178 GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 178 a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+.+-..+.|.. ..|+.|.....+..|-|-++. |+++..++.+
T Consensus 157 ~~Y~asKaav~----~ltk~lA~ela~~gIrVN~V~-PG~i~T~~~~ 198 (255)
T PRK06113 157 TSYASSKAAAS----HLVRNMAFDLGEKNIRVNGIA-PGAILTDALK 198 (255)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEEE-ECCCCCCHHH
T ss_conf 20899999999----999999999826494999986-4889870222
No 180
>pfam03949 Malic_M Malic enzyme, NAD binding domain.
Probab=92.87 E-value=0.37 Score=28.90 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=47.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH----CC-------CEEECCCC-------------------
Q ss_conf 9999999986787720012899616442034689999862----04-------53312467-------------------
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSR----NA-------TVTMAHSK------------------- 194 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~----~a-------tVti~hs~------------------- 194 (306)
+|++-=++- .+-+++..++++.|-+. -|--++.||.+. |. .+.+|+|+
T Consensus 10 Agll~alk~-~g~~l~d~riv~~GAGs-Ag~gia~~l~~~~~~~G~~~~eA~~~i~~~D~~Gll~~~r~~l~~~k~~~a~ 87 (255)
T pfam03949 10 AGLLNALKI-TGKPLSDQKIVFFGAGA-AGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLLTEGREDLNPFKKPFAR 87 (255)
T ss_pred HHHHHHHHH-HCCCHHHCEEEEECCCH-HHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHH
T ss_conf 999999998-29987782899979788-9999999999999876999788736589975977455899885599999975
Q ss_pred -------CCCHHHHHHHC--CEEEEECCCCCCCCCCCCCC
Q ss_conf -------65347764223--57365224432122010476
Q gi|254780506|r 195 -------TKNLPEICRTA--DILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 195 -------T~~l~~~~~~A--DivIsAvG~p~~i~~~~vk~ 225 (306)
..+|.+.++.+ |++|-.-|.|+.|+++||+.
T Consensus 88 ~~~~~~~~~~L~e~v~~~kP~vlIG~S~~~g~ft~evv~~ 127 (255)
T pfam03949 88 KTNEVKGWGTLAEAVKGAKPDVLIGVSGVPGVFTEEIVRA 127 (255)
T ss_pred HCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 3765556699999986268877998168889889999999
No 181
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.86 E-value=0.12 Score=32.31 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 2467653477642235736522443212201047
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.+..|+.|....+.-.|=|+++- |++++.+|..
T Consensus 158 l~~~s~sL~~El~~~gI~V~~v~-Pg~v~T~~~~ 190 (262)
T PRK09072 158 LRGFSEALRRELADTGVRVLYLA-PRATRTAMNS 190 (262)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC
T ss_conf 99999999998462290899997-2899988885
No 182
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=92.85 E-value=0.54 Score=27.75 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC-------------------CCCCCHH
Q ss_conf 567667999999998678772001289961644203468999986204533124-------------------6765347
Q gi|254780506|r 139 LVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAH-------------------SKTKNLP 199 (306)
Q Consensus 139 ~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~h-------------------s~T~~l~ 199 (306)
.+||++..+...|.+... --.|++++|.|-+--||.-+.++....||+|+..- .+.+++.
T Consensus 120 ~~~~~~~Ta~~~l~~~~~-~~~g~~vLi~gaaGgVG~~avQlAk~~Ga~Vi~t~~s~~k~e~~~~lGA~~vi~~~~~~~~ 198 (327)
T PRK10754 120 ASFLKGLTVYYLLRKTYE-IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALKAGAWQVINYREENIV 198 (327)
T ss_pred HHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 521358879887653137-8999999998177611268999999869999999898999999996699999989999999
Q ss_pred HH----H--HHCCEEEEECCCCCCCCC-CCCCCCCEEEEEEEE
Q ss_conf 76----4--223573652244321220-104766269983111
Q gi|254780506|r 200 EI----C--RTADILVVAVGRPRMVQV-DWIKTGSLVIDVGIN 235 (306)
Q Consensus 200 ~~----~--~~ADivIsAvG~p~~i~~-~~vk~gavvIDvGi~ 235 (306)
+. + +..|+++-++|...+-.. +.++++-.++-+|..
T Consensus 199 ~~i~~~t~g~gvdvv~D~vG~~~~~~~~~~l~~~G~iv~~G~~ 241 (327)
T PRK10754 199 ERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNA 241 (327)
T ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999986899836999898889999999986349899998068
No 183
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.66 E-value=0.38 Score=28.85 Aligned_cols=83 Identities=25% Similarity=0.393 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC---EEECCCC---------------------------
Q ss_conf 9999999986787720012899616442034689999862045---3312467---------------------------
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT---VTMAHSK--------------------------- 194 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at---Vti~hs~--------------------------- 194 (306)
.|++.-++- .+-+++..++++.|-+. -|.-++.||...+.+ +..++|+
T Consensus 10 Agll~a~r~-~g~~l~d~riv~~GAGs-Ag~gia~ll~~~g~~~~~i~lvD~~GLl~~~r~d~~~~~k~~~a~~~~~~~~ 87 (226)
T cd05311 10 AGLLNALKL-VGKKIEEVKIVINGAGA-AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT 87 (226)
T ss_pred HHHHHHHHH-HCCCCCCCEEEEECHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999998-49981030799987689-9999999999827760267999367852478864144999999987233566
Q ss_pred CCCHHHHHHHCCEEEEECCCCCCCCCCCCC---CCCEEE
Q ss_conf 653477642235736522443212201047---662699
Q gi|254780506|r 195 TKNLPEICRTADILVVAVGRPRMVQVDWIK---TGSLVI 230 (306)
Q Consensus 195 T~~l~~~~~~ADivIsAvG~p~~i~~~~vk---~gavvI 230 (306)
..++.+.++.+|++|-.-| |+.|++++|| +.-+|.
T Consensus 88 ~~~l~e~v~~~~vLIG~S~-~g~Ft~evv~~M~~~PiIF 125 (226)
T cd05311 88 GGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVF 125 (226)
T ss_pred CCCHHHHHCCCCEEEECCC-CCCCCHHHHHHHCCCCEEE
T ss_conf 6879998377757997268-9977999999747798898
No 184
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.66 E-value=0.13 Score=32.12 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999867877200128996164420346-89999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..++.- .|.-+.+..-+...+.| .+.+-..+.|.. ..|+.+...... +|=|-++- |+++..+|.
T Consensus 125 ~~~~p~m~~~-----~g~iI~~~S~~~~~~~~~~~~Y~asKaal~----~ltr~lA~ela~-~IrVN~I~-PG~i~T~~~ 193 (263)
T PRK06200 125 KAALPALKAS-----GGSIIFTLSNSSFYPGGGGPLYTASKHAVV----GLVRQLAYELAP-KIRVNGVA-PGGTVTDLR 193 (263)
T ss_pred HHHHHHHHHC-----CCEEEEECCHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHCC-CCEEEEEE-CCCCCCCCC
T ss_conf 9998988607-----977999822021258898567899999999----999999999779-98899996-288988864
Q ss_pred CC
Q ss_conf 76
Q gi|254780506|r 224 KT 225 (306)
Q Consensus 224 k~ 225 (306)
.+
T Consensus 194 ~~ 195 (263)
T PRK06200 194 GP 195 (263)
T ss_pred CC
T ss_conf 42
No 185
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.64 E-value=0.15 Score=31.69 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 999999998678772001289961644203468-9999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..+..- + .|.=|-+---+-..|.|- +.+-..|.|-+ .-|+.+....-.--|-|-++ .|+++..+|.
T Consensus 121 ~~~~p~m~~~-~---~G~IInisS~~~~~~~~~~~~Y~asKaav~----~lTk~lA~e~a~~gIrVNaI-~PG~i~T~~~ 191 (252)
T PRK06138 121 KYAIPIMQRQ-G---GGSIVNTASQLALAGGRGRAAYVASKGAIA----SLTRAMALDHATDGIRVNAV-APGTIDTPYF 191 (252)
T ss_pred HHHHHHHHHC-C---CCEEEEECCHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCHHH
T ss_conf 9999999981-9---967999765665778999778999999999----99999999862229199999-7588997356
Q ss_pred CC
Q ss_conf 76
Q gi|254780506|r 224 KT 225 (306)
Q Consensus 224 k~ 225 (306)
++
T Consensus 192 ~~ 193 (252)
T PRK06138 192 RR 193 (252)
T ss_pred HH
T ss_conf 67
No 186
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.64 E-value=0.57 Score=27.62 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCC-----------------CCHHH
Q ss_conf 5676679999999986787720012899616442034689999862045-33124676-----------------53477
Q gi|254780506|r 139 LVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKT-----------------KNLPE 200 (306)
Q Consensus 139 ~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T-----------------~~l~~ 200 (306)
.+.|.-..++.-++.. -...|.+++|+|.+. +|-=.++++...||. |+++...- .+..+
T Consensus 101 ~~~c~~~t~~~~~~~~--~~~~g~~V~V~G~G~-iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~~~~ 177 (280)
T TIGR03366 101 PAGCATATVMAALEAA--GDLKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAE 177 (280)
T ss_pred HHCCHHHHHHHHHHHC--CCCCCCEEEEEECCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCHHH
T ss_conf 6401355779999971--789999899990786-8999999999849987999919989999999739989837757799
Q ss_pred H----H--HHCCEEEEECCCCCCCCC--CCCCCCCEEEEEEEE
Q ss_conf 6----4--223573652244321220--104766269983111
Q gi|254780506|r 201 I----C--RTADILVVAVGRPRMVQV--DWIKTGSLVIDVGIN 235 (306)
Q Consensus 201 ~----~--~~ADivIsAvG~p~~i~~--~~vk~gavvIDvGi~ 235 (306)
. + +-+|++|-++|.|..+.. +++++|-.++-+|..
T Consensus 178 ~~~~~~~g~g~D~vie~~G~~~~~~~a~~~l~~gG~iv~vG~~ 220 (280)
T TIGR03366 178 RQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred HHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999727888709998789889999999986049899998046
No 187
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.64 E-value=0.16 Score=31.38 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 999999998678772001289961644203468-999986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.+++..|++- .|.=|-|-.-+-..|.|- +.+-..+.|-+ .-|+.+....-.--|=|-++ .|+++...|
T Consensus 122 ~~~~p~l~~~-----~GsIInisS~~a~~~~~~~~~Y~asKaal~----~ltr~lA~e~~~~gIRvNaI-~PG~i~T~~ 190 (258)
T PRK08628 122 HYCLPHLKAS-----RGAIVNISSKTALTGQGGTSGYAAAKGAQL----GLTREWAVALAKDGVRVNAV-IPAEVMTPL 190 (258)
T ss_pred HHHHHHHHHC-----CCEEEEEECHHCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEE-EECCCCCHH
T ss_conf 9999988854-----954999812210167998488999999999----99999999964119599999-878898766
No 188
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.61 E-value=0.17 Score=31.27 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=15.4
Q ss_pred HHHHHC-CCCEEECCCCCCC-CHHHHHHHHHHHCC-CCCCCEEE
Q ss_conf 999983-9700002474111-22669999998523-12212588
Q gi|254780506|r 55 RMAKHC-GFHSVQYNFPVDI-SQIDLENAVLSLNK-DDSIHGIL 95 (306)
Q Consensus 55 K~a~~l-GI~~~~~~l~~~~-se~el~~~I~~LN~-d~~V~GIl 95 (306)
+.++++ |-+...+. -|+ +++++.+.+++..+ -..+|+++
T Consensus 50 ~~~~~~~~~~~~~~~--~Dvs~~~~v~~~~~~~~~~~g~id~lv 91 (256)
T PRK08594 50 ELAETLEQQESLVLP--CDVTSDEEITACFETIKKEVGVIHGVA 91 (256)
T ss_pred HHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999870799479999--138999999999999999858867466
No 189
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.56 E-value=0.2 Score=30.74 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=31.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCC--CCCC---CCCCCCCEEEEEEE
Q ss_conf 1289961644203468999986204533124676534776422357365224432--1220---10476626998311
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPR--MVQV---DWIKTGSLVIDVGI 234 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~--~i~~---~~vk~gavvIDvGi 234 (306)
-...+.-.+.++|++|+.+- .-...|+.|.|+.+.+ .+.+ ..+++|..++-+|-
T Consensus 151 ~~~~v~~~~~~~g~~L~el~-------------------~~~~~~~~vvai~r~~~~~i~p~g~~~l~~gD~l~v~~~ 209 (225)
T COG0569 151 IEEKVAEDSPLAGKTLRELD-------------------LRLPYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGA 209 (225)
T ss_pred EEEEECCCCCCCCCCHHHHC-------------------CCCCCCCEEEEEECCCCCEECCCCCCEECCCCEEEEEEC
T ss_conf 99993589825775989932-------------------546788289999839963655999858767999999966
No 190
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.55 E-value=0.17 Score=31.29 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9999999986787720012899616442034689-999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..|.. .+ .|.=+-+-..+-..|.|-. .+-..|.|- +..|+.+......-.|=|-++ .|+++..+|.
T Consensus 122 ~~~~p~m~~-~~---~G~IInisS~~~~~~~~~~~~Y~asKaal----~~ltk~lA~e~~~~gIrVN~V-~PG~v~T~~~ 192 (239)
T PRK12828 122 KAALPALTA-SG---GGRIVNIGAGAALKAGPGMGAYAAAKAGV----ARLTEALAAELLDRGITVNAV-LPSIIDTPPN 192 (239)
T ss_pred HHHHHHHHH-CC---CCEEEEEECHHHCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHCEEEEEE-EECCCCCCCH
T ss_conf 999999987-69---98699997778677799968999999999----999999999861309089999-7387888200
Q ss_pred CCC
Q ss_conf 766
Q gi|254780506|r 224 KTG 226 (306)
Q Consensus 224 k~g 226 (306)
++.
T Consensus 193 ~~~ 195 (239)
T PRK12828 193 RAD 195 (239)
T ss_pred HCC
T ss_conf 241
No 191
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.52 E-value=0.43 Score=28.44 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC--------------------CC-
Q ss_conf 567667999999998678772001289961644203468999986204533124676--------------------53-
Q gi|254780506|r 139 LVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT--------------------KN- 197 (306)
Q Consensus 139 ~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T--------------------~~- 197 (306)
|+=+++..+-++.+.+..-+-.-++++|+|-|+ +|.-+|.+| .++..|++....- .|
T Consensus 210 ~vig~~~~i~~~~~~~g~~~~~~~~v~I~Ggg~-ig~~la~~L-~~~~~v~iIe~d~~~~~~la~~l~~~~Vi~GD~td~ 287 (455)
T PRK09496 210 FFVAASEHIRRVMSELGRLEKPVKRIMIAGGGN-IGLYLAKLL-EKGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQ 287 (455)
T ss_pred EEEECHHHHHHHHHHHCCCCCCCCEEEEECCCH-HHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 999257769999998586546665189987869-999999987-408838997089899999997478539997887688
Q ss_pred --H-HHHHHHCCEEEEECCC--CCCCCCCC
Q ss_conf --4-7764223573652244--32122010
Q gi|254780506|r 198 --L-PEICRTADILVVAVGR--PRMVQVDW 222 (306)
Q Consensus 198 --l-~~~~~~ADivIsAvG~--p~~i~~~~ 222 (306)
| ++-+.+||++|+++|. -|++..-.
T Consensus 288 ~~L~e~gi~~aD~~ia~T~~De~Ni~~~ll 317 (455)
T PRK09496 288 ELLEEEGIDEADAFIALTNDDEANILSSLL 317 (455)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 999763645564899903881889999999
No 192
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.52 E-value=0.15 Score=31.60 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=30.4
Q ss_pred CEEEEECC-CCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 12899616-44203468-9999862045331246765347764223573652244321220104
Q gi|254780506|r 162 QHAVVIGR-SNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 162 k~vvVvGr-s~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
-.++.++- +-..|.|- +.+-..+.|.+. .|+.+........|-|-++ .|+++..++.
T Consensus 137 G~IVnisS~~~~~~~~~~~~Y~asKaal~~----ltk~lA~E~a~~gIrVN~V-~PG~i~T~~~ 195 (262)
T PRK13394 137 GVVIYMGSVHSHEASPLKSAYVTAKHGLLG----LARVLAKEGAKHNVRSHVV-CPGFVRTPLV 195 (262)
T ss_pred CEEEEECCHHHCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHCCEEEEEE-EECCCCCCHH
T ss_conf 689997457767679997689999999999----9999999852319699999-7587887023
No 193
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.46 E-value=0.27 Score=29.89 Aligned_cols=84 Identities=24% Similarity=0.238 Sum_probs=56.3
Q ss_pred HHHHHCCCCCCHHH----CCHHHHHHHHHC--------------------CCCCCCCCCCHHHHHHHH---HHHCCCCCC
Q ss_conf 89860687435132----155338887304--------------------778875676679999999---986787720
Q gi|254780506|r 108 SIIQSIVPEKDVDG----LHVVNAGKVMIG--------------------DFTTGLVPCTPAGAILLI---EQFKGCDLS 160 (306)
Q Consensus 108 ~i~~~I~p~KDVDG----l~~~N~g~l~~~--------------------~~~~~~~PcTp~av~~ll---~~y~~i~l~ 160 (306)
++...|-|++||=+ .++.-++.++-. ..+...-++|..|++..+ .++.+.+++
T Consensus 127 ~i~~~iG~~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~ 206 (411)
T COG0334 127 AIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLE 206 (411)
T ss_pred HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCC
T ss_conf 99984598767446336878999999997432002778764322776314677999865103307999999998177768
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEECC
Q ss_conf 01289961644203468999986204533124
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~h 192 (306)
|++|+|-|-++ ||.-++..|.+.||.|..|-
T Consensus 207 G~rVaVQG~GN-Vg~~aa~~l~~~GAkvv~~s 237 (411)
T COG0334 207 GARVAVQGFGN-VGQYAAEKLHELGAKVVAVS 237 (411)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEEE
T ss_conf 87899977628-99999999997499799997
No 194
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.45 E-value=0.14 Score=31.76 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=50.2
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEE--ECCCCHH-H--HHHCCEECCCC
Q ss_conf 46765347764223573652244321220104766269983111112676688568--4177567-8--73144008986
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQLGKTVL--VGDVADE-C--KSVVGAITPVP 266 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~--~GDvd~~-~--~~~a~~iTPVP 266 (306)
+..|+.|........|=|.++ .|++++.+|+.. . .. . . ...+ .-||... + .++-....=+|
T Consensus 158 ~g~t~sLa~El~~~gIrVn~V-~PG~v~T~m~~g-~-------~~-~--~--~~~~~~pe~vA~~iv~~i~~~~~~v~~P 223 (273)
T PRK07825 158 VGLTDALRLELRPTGVHVSVV-LPTFVNTELIAG-T-------KG-A--K--GLKNAEPEDVAAAIVALVAKPRPEVRVP 223 (273)
T ss_pred HHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCCC-C-------CC-C--C--CCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999999999852309599999-709998565799-9-------87-6--6--8899999999999999996899889978
Q ss_pred CCCCHHHHH-HHH-HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 986868999-999-9999999998688985556434
Q gi|254780506|r 267 GGVGPMTIA-MLM-ANTVIAAYRSLGMKSPKFDAQS 300 (306)
Q Consensus 267 GGVGp~Tva-~L~-~N~v~aa~~~~~~~~~~~~~~~ 300 (306)
...+.+..+ .|+ ..+.++-.|++|...--.+.+.
T Consensus 224 ~~~~~~~~~~~llP~~~~~~l~r~lg~d~~~~~~~~ 259 (273)
T PRK07825 224 RALGALAQAQQLLPRRVREALNRALGGDRVFLDVDT 259 (273)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 578999999973979999999998576740245798
No 195
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.43 E-value=0.16 Score=31.44 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=15.7
Q ss_pred HHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHH
Q ss_conf 9999998397000024741112-2669999998
Q gi|254780506|r 53 KTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLS 84 (306)
Q Consensus 53 K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~ 84 (306)
..+.++++|-.+..++. |++ ++++.+.+++
T Consensus 43 ~~~~~~~~~~~~~~~~~--Dv~~~~~i~~~~~~ 73 (261)
T PRK08265 43 GAAVAASLGERARFIAT--DITDDAAIERAVAT 73 (261)
T ss_pred HHHHHHHHCCCEEEEEC--CCCCHHHHHHHHHH
T ss_conf 99999981997289981--38999999999999
No 196
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.42 E-value=0.14 Score=31.75 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=70.9
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9996798678999999999999839700002474111-226699999985231-22125888346887113788986068
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIV 114 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~ 114 (306)
+++++-+.+. .+...+.+++.|.++..+.. |+ +++++.+.+++..+. -.+| |+|--- ++....-+.-++
T Consensus 33 V~l~~r~~~~---l~~~~~~i~~~g~~~~~~~~--Dvtd~~~v~~~v~~~~~~~G~iD-iLVNNA---Gi~~~~~~~~~~ 103 (238)
T PRK07666 33 VGLLARSEEN---LKAVAKEVEAEGVKAVIATA--DVSDYEEVTTAIETLKNGLGSID-ILINNA---GISKFGKFLELD 103 (238)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCCEEEEEE--ECCCHHHHHHHHHHHHHHHCCCC-EEEECC---CCCCCCCHHHCC
T ss_conf 9999899999---99999999955992799993--07999999999999999819987-899847---457999823399
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCC
Q ss_conf 7435132155338887304778875676679999999986787720012899616442034689-999862045331246
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHS 193 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs 193 (306)
++ |.|-+-..|+--.+ -|| .+++..+... + .|.=+-|-.-+-..|.|.. .+-..|.|-+ .
T Consensus 104 ~e-~~~~~~~vNl~g~~---------~~~-~~~lp~M~~~-~---~G~IInisS~ag~~~~~~~~~Y~aSK~av~----g 164 (238)
T PRK07666 104 VA-EWEKIIQVNLMGVY---------YVT-RAVLPSMIEQ-Q---SGDIINISSTAGQKGAPVTSAYSASKFAVL----G 164 (238)
T ss_pred HH-HHHHHHHHHHHHHH---------HHH-HHHHHHHHHC-C---CCEEEEECCHHHHCCCCCCCHHHHHHHHHH----H
T ss_conf 99-99999989629999---------999-9999999974-9---958999877777067999806999999999----9
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 76534776422357365224432122010476
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.|+.|......-.|=|.++ .|+++..+|.++
T Consensus 165 lt~~la~El~~~gIrVn~v-~PG~v~T~m~~~ 195 (238)
T PRK07666 165 LTESLMMEVRKHNIRVTAL-TPSTVATDMAVD 195 (238)
T ss_pred HHHHHHHHHCCCCEEEEEE-EECCCCCCCCCC
T ss_conf 9999999854139699999-858898624678
No 197
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.40 E-value=0.17 Score=31.28 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=28.1
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 012899616442034689999-862045331246765347764223573652244321220104
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLL-LSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL-~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
|-.++.+.-+...+.|-.... ..|.|-. .-|+.+......--|=|-|+- |+++...|.
T Consensus 138 gg~Iv~~s~~~~~~~p~~~~y~asKaal~----~ltr~lA~el~~~gIRVNaVa-PG~i~T~~~ 196 (256)
T PRK07889 138 GGSIVGLDFDATVAWPAYDWMGVAKAALE----STNRYLARELGPRGVRSNLVA-AGPIRTLAA 196 (256)
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEEE-ECCCCCHHH
T ss_conf 88746745755545674246777899999----999999999734097999997-478877344
No 198
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.36 E-value=0.47 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=18.9
Q ss_pred CCHHHHHHHC--CEEEEECCCCCCCCCCCCCCC
Q ss_conf 5347764223--573652244321220104766
Q gi|254780506|r 196 KNLPEICRTA--DILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 196 ~~l~~~~~~A--DivIsAvG~p~~i~~~~vk~g 226 (306)
.+|.+.++.+ |++|..-|+|+.|+++||+.=
T Consensus 95 ~~L~e~v~~~kp~vlIG~S~~~g~ft~e~v~~M 127 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAM 127 (279)
T ss_pred CCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 999999972489779980689897799999999
No 199
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.29 E-value=0.2 Score=30.70 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 676534776422357365224432122
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQ 219 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~ 219 (306)
..|+.+......--|=|-++- |+++.
T Consensus 164 ~ltr~lA~ela~~gIrVN~I~-PG~~~ 189 (260)
T PRK12823 164 ALTASLAFEYAEHGIRVNAVA-PGGTE 189 (260)
T ss_pred HHHHHHHHHHHHHCEEEEEEE-CCCCC
T ss_conf 999999999615296999993-58677
No 200
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.29 E-value=0.14 Score=31.90 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=14.8
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999999852312212588834688711378898606874
Q gi|254780506|r 78 LENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPE 116 (306)
Q Consensus 78 l~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~ 116 (306)
+.+.+..|.. | .-|++..|-.+- .+.+++.+.|.
T Consensus 61 l~e~v~sl~~-p--r~Iilmv~aG~~--Vd~vi~~L~~~ 94 (474)
T PTZ00142 61 LEELVNSLKR-P--RRVMLLIKAGEA--VDEFIDNILPH 94 (474)
T ss_pred HHHHHHHCCC-C--CEEEEEECCCHH--HHHHHHHHHHC
T ss_conf 9999973799-9--989998269825--99999999850
No 201
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.26 E-value=0.27 Score=29.85 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=28.7
Q ss_pred HHHHCCCCCCCCEEEEECC-----------CCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHH-CCEEEEECCCCCC
Q ss_conf 9986787720012899616-----------44203468999986204533124676534776422-3573652244321
Q gi|254780506|r 151 IEQFKGCDLSGQHAVVIGR-----------SNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRT-ADILVVAVGRPRM 217 (306)
Q Consensus 151 l~~y~~i~l~Gk~vvVvGr-----------s~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~-ADivIsAvG~p~~ 217 (306)
=+++ +++.+.-+.-|+|. ..+=|+|+..++...+. .. +..-.++.+.+++ +--||.+-|...|
T Consensus 160 a~~l-~v~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~~~~~-~~--~~~~~~i~~~v~~~g~eIi~~KG~t~~ 234 (315)
T PRK00066 160 AEKL-DVDPRSVHAYILGEHGDTEFPVWSHANVAGVPLEEYLEENEE-YD--EEDLDEIFESVRDAAYEIIEKKGATYY 234 (315)
T ss_pred HHHH-CCCCCCCEEEEEECCCCCEEECCCCCEECCEEHHHHHCCCCC-CC--HHHHHHHHHHHHHHHHHHEECCCCCCH
T ss_conf 9984-999303168899526896375222144876888997501477-88--889999999998757863116787611
No 202
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.25 E-value=1.1 Score=25.54 Aligned_cols=72 Identities=25% Similarity=0.412 Sum_probs=45.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC--------CH--------------------------------
Q ss_conf 20012899616442034689999862045331246765--------34--------------------------------
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK--------NL-------------------------------- 198 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~--------~l-------------------------------- 198 (306)
-+.|+++|||-|- +|--+|..|.+.|..||+...... ++
T Consensus 135 ~~~k~vvViGgG~-IGlE~A~~l~~~G~~Vtvve~~~~il~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~ 213 (427)
T TIGR03385 135 NKVDRVVIIGGGY-IGLEMVEALRERGKNVTLIHRSDKILNKLFDEEMNQIVEEELEKHEIELRLNEEVDSIIGEERVGV 213 (427)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCEEE
T ss_conf 7998899999639-999999999976998999984683365548999999999999975979997988999987887899
Q ss_pred --HHHHHHCCEEEEECCC-CCC--CCCCCC---CCCCEEEE
Q ss_conf --7764223573652244-321--220104---76626998
Q gi|254780506|r 199 --PEICRTADILVVAVGR-PRM--VQVDWI---KTGSLVID 231 (306)
Q Consensus 199 --~~~~~~ADivIsAvG~-p~~--i~~~~v---k~gavvID 231 (306)
....-.+|.||.|+|+ |+. +...-+ +.|.+++|
T Consensus 214 l~~g~~i~~D~vi~a~G~~Pn~~~~~~~gl~~~~~G~I~Vd 254 (427)
T TIGR03385 214 ITSGGVYQADMVILAIGVKPNSELAKDSQLKLGRTGAIWVN 254 (427)
T ss_pred EECCCEEECCEEEECCCCCCCCCCCCCCCCEECCCCCEECC
T ss_conf 94699997289998877467642432556166588868527
No 203
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.23 E-value=0.34 Score=29.17 Aligned_cols=18 Identities=11% Similarity=0.005 Sum_probs=7.9
Q ss_pred CCCEEEEEEECCCHHHHH
Q ss_conf 997599999679867899
Q gi|254780506|r 31 VQVGLAVVLVGNDPASCS 48 (306)
Q Consensus 31 ~~P~LavIlvGddpaS~~ 48 (306)
+.|+.++|-.|.=..+..
T Consensus 5 k~~KI~ViGaGawGTALA 22 (340)
T PRK12439 5 REPKVVVLGGGSWGTTVA 22 (340)
T ss_pred CCCCEEEECCCHHHHHHH
T ss_conf 899289989699999999
No 204
>PRK06196 oxidoreductase; Provisional
Probab=92.22 E-value=0.18 Score=31.16 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=22.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999967986789999999999998397000024741112266999999852312212588
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGIL 95 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIl 95 (306)
.+|+++-+++-..-+.... -++++...+|..-.+-.++.+.+.+. .+.+|..+
T Consensus 52 ~Vil~~R~~~k~~~a~~~i-----~~~~~~~lDLs~~~sVr~~a~~~~~~--~~~lDvLI 104 (316)
T PRK06196 52 HVVVPARRPDAAREALAGI-----DGVEVVALDLADLASVRAFAERFLDS--GRRIDILI 104 (316)
T ss_pred EEEEEECCHHHHHHHHHHH-----CCCCEEECCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 8999949999999999874-----17857983688999999999999975--79832999
No 205
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.13 E-value=0.47 Score=28.17 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 0012899616442034689999862045331
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTM 190 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti 190 (306)
.|.++.+.|. +|.|+..++.. ++.+.+
T Consensus 133 ~g~~~~~gGN---iG~p~~~~~~~-~~d~~V 159 (438)
T PRK04663 133 AGVKVAVGGN---IGVPALDLLEQ-DAELYV 159 (438)
T ss_pred CCCCCEEEEE---CCCHHHHHHHC-CCCEEE
T ss_conf 8997068721---57168875304-697899
No 206
>PRK07856 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.14 Score=31.85 Aligned_cols=95 Identities=17% Similarity=0.086 Sum_probs=35.9
Q ss_pred CCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHH-HHHHHHHHCCCEEECCC
Q ss_conf 43513215533888730477887567667999999998678772001289961-64420346-89999862045331246
Q gi|254780506|r 116 EKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKP-MGQLLLSRNATVTMAHS 193 (306)
Q Consensus 116 ~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~P-la~lL~~~~atVti~hs 193 (306)
.++.+-.++...-+++.-+....|. |+ ..++..+.... .+-.++-++ .+-..|.| .+.+-..+.|-. .
T Consensus 89 ~~~~~~~~~~~~~~~~~vNl~~~~~-l~-q~~~~~m~~~~----~~G~IVnisS~~~~~~~~~~~~Y~asKaal~----~ 158 (254)
T PRK07856 89 YALAAEASPRFHEKIVELNLLAPLL-VA-QAANAVMQQQP----GGGSIVNIGSVSGRRPSPGTAAYGAAKAGLL----N 158 (254)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHCC----CCCEEEEECCHHHCCCCCCCHHHHHHHHHHH----H
T ss_conf 9881349999999999998289999-99-99999999727----9978999454243278897287999999999----9
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 76534776422357365224432122010
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
-|+.+...... +|-|=+| .|+++..++
T Consensus 159 ltk~lA~e~a~-~IrVN~V-aPG~i~T~~ 185 (254)
T PRK07856 159 LTTSLAVEWAP-KVRVNAV-VVGLVETEQ 185 (254)
T ss_pred HHHHHHHHHCC-CCEEEEE-EECCCCCHH
T ss_conf 99999999779-9889999-759897711
No 207
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.07 E-value=0.17 Score=31.27 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 999999998678772001289961-644203468-999986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.+++..|+.- + .|. ++.++ -+...|.|- +.+-..+.|.. ..|+.+......-.|-|-++ .|+++..+|
T Consensus 121 ~~~~p~m~~~-~---~G~-Iv~isS~~~~~~~~~~~~Y~asKaal~----~lt~~lA~e~~~~gIrvN~V-~PG~i~T~~ 190 (258)
T PRK12429 121 KAALPHMKAQ-K---WGR-IINMASVHGLVGSAGKAAYVSAKHGLI----GLTKVVALEGATHGVTVNAI-CPGYVDTPL 190 (258)
T ss_pred HHHHHHHHHC-C---CCE-EEEECCHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHCEEEEEE-EECCCCCCC
T ss_conf 6777766435-9---928-999877554668999758999999999----99999999853209799999-748798710
Q ss_pred CC
Q ss_conf 47
Q gi|254780506|r 223 IK 224 (306)
Q Consensus 223 vk 224 (306)
++
T Consensus 191 ~~ 192 (258)
T PRK12429 191 VR 192 (258)
T ss_pred HH
T ss_conf 22
No 208
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.05 E-value=0.18 Score=31.09 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=21.6
Q ss_pred HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 99998620453312467653477642235736522443212201047
Q gi|254780506|r 178 GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 178 a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+.+-..|.|-+ ..|+.+....-.-.|=|-|+ .|+++..+|.+
T Consensus 155 ~~Y~asKaav~----~lTr~lA~E~a~~gIrVNaV-~PG~i~T~~~~ 196 (254)
T PRK07478 155 AAYAASKAGLI----GLTQVLAAEYGARGIRVNAL-LPGGTDTPMGR 196 (254)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEE-EECCCCCHHHH
T ss_conf 56798899999----99999999857038599999-77989887576
No 209
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=92.03 E-value=0.45 Score=28.32 Aligned_cols=150 Identities=21% Similarity=0.345 Sum_probs=88.0
Q ss_pred HHHHHHHHHHCCCCEEECCC-CCCCCHHHHHHHHHHHCCCCCCCEEEEECC--CCCCHHHHHHHHHCCCCCCHHHCCHHH
Q ss_conf 99999999983970000247-411122669999998523122125888346--887113788986068743513215533
Q gi|254780506|r 50 VSAKTRMAKHCGFHSVQYNF-PVDISQIDLENAVLSLNKDDSIHGILVQLP--LPSTVSEQSIIQSIVPEKDVDGLHVVN 126 (306)
Q Consensus 50 v~~K~K~a~~lGI~~~~~~l-~~~~se~el~~~I~~LN~d~~V~GIlvQlP--LP~~id~~~i~~~I~p~KDVDGl~~~N 126 (306)
+.+-.|.-+++||++..-+| ..++|-+||++ ++. .|.+.+-.= +|+-+|- |-...+|+-+.|
T Consensus 195 ~~~E~k~LkklGv~fr~~~lvGkt~TL~eL~~---~YG----fDAVFIgtGAG~pkl~Ni--------pG~~L~gvysA~ 259 (462)
T TIGR01316 195 VETEVKKLKKLGVKFRTDYLVGKTVTLEELLE---KYG----FDAVFIGTGAGLPKLLNI--------PGEELKGVYSAN 259 (462)
T ss_pred HHHHHHHHHHCCEEEEECCEECCCHHHHHHHH---HCC----CCEEEEEECCCCCEECCC--------CCHHHCCHHHHH
T ss_conf 89888876326637994437505112888887---519----707999506898700167--------843434002234
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHH----CCCCC-CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCCCCH--
Q ss_conf 8887304778875676679999999986----78772-0012899616442034689999862045-33124676534--
Q gi|254780506|r 127 AGKVMIGDFTTGLVPCTPAGAILLIEQF----KGCDL-SGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKTKNL-- 198 (306)
Q Consensus 127 ~g~l~~~~~~~~~~PcTp~av~~ll~~y----~~i~l-~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T~~l-- 198 (306)
+ | +-=+.|++.| ++.++ -||+++|||-+++ -.=-|.--++-||- |++.-++|+.-
T Consensus 260 ----------d-f-----LtR~nLmKAyefp~~dtPv~~gK~vvviGgGnt-AvD~artAlRLGaEqvh~~YRrtRedmt 322 (462)
T TIGR01316 260 ----------D-F-----LTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNT-AVDAARTALRLGAEQVHVVYRRTREDMT 322 (462)
T ss_pred ----------H-H-----HHHHHHHHHHCCCCCCCCEEECCEEEEECCCHH-HHHHHHHHHHCCCCEEEEEEECCCCCCH
T ss_conf ----------6-8-----877777654236678875654476899878536-7877766645284236998854777513
Q ss_pred -----------------------------------------------------------HHHHHHCCEEEEECCC-CCCC
Q ss_conf -----------------------------------------------------------7764223573652244-3212
Q gi|254780506|r 199 -----------------------------------------------------------PEICRTADILVVAVGR-PRMV 218 (306)
Q Consensus 199 -----------------------------------------------------------~~~~~~ADivIsAvG~-p~~i 218 (306)
.+++-.||-||.|+|. ||-|
T Consensus 323 Ar~EEi~ha~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~Npi 402 (462)
T TIGR01316 323 AREEEIKHAEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEANPI 402 (462)
T ss_pred HHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCCCE
T ss_conf 66999998853892899874216898657651899998853768811457812430499517886265999745898830
Q ss_pred CCCC---CC---CCCEEEE
Q ss_conf 2010---47---6626998
Q gi|254780506|r 219 QVDW---IK---TGSLVID 231 (306)
Q Consensus 219 ~~~~---vk---~gavvID 231 (306)
-.+- +| .|++++|
T Consensus 403 ~~e~~r~lkt~~~GTIvVd 421 (462)
T TIGR01316 403 IAEDSRSLKTSKRGTIVVD 421 (462)
T ss_pred EEECCCEEEECCCCCEEEC
T ss_conf 3306733334588657874
No 210
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.16 Score=31.43 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=39.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHH
Q ss_conf 720012899616442034689999862045331246765347764
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEIC 202 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~ 202 (306)
+|+||.++|-|-|.=.|+-+|..|.++||+|.+|-++...|++..
T Consensus 373 ~L~GKvalITGASSGIG~A~A~~LA~~GA~Vvl~AR~~e~Le~v~ 417 (663)
T PRK07201 373 PLEGKHVIITGASSGIGRATAIKVAEAGATVFALARDGEKLDELV 417 (663)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 879947999388759999999999987998999989999999999
No 211
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=92.00 E-value=0.11 Score=32.52 Aligned_cols=85 Identities=20% Similarity=0.357 Sum_probs=47.0
Q ss_pred HHHHHHHCCEEEEEC---CC--CCCCCCCCC---CCCCEEEEEEEEECCCCC-CCCCEEECCCCHHHHHHCCEECCCCCC
Q ss_conf 477642235736522---44--321220104---766269983111112676-688568417756787314400898698
Q gi|254780506|r 198 LPEICRTADILVVAV---GR--PRMVQVDWI---KTGSLVIDVGINRINSPQ-LGKTVLVGDVADECKSVVGAITPVPGG 268 (306)
Q Consensus 198 l~~~~~~ADivIsAv---G~--p~~i~~~~v---k~gavvIDvGi~~~~~~~-~~~~~~~GDvd~~~~~~a~~iTPVPGG 268 (306)
..+++++.||||+-. || |.+++.+|+ |||++++|.....--|-+ ...++++- +..| +.-.+|-.||-
T Consensus 238 ~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~--~~gV--~iig~~nlp~r 313 (356)
T COG3288 238 VAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVT--KNGV--KIIGYTNLPGR 313 (356)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCCCEEE--ECCE--EEEEECCCCHH
T ss_conf 9988447888998144589987435279999744899689981322289865566980787--4786--99964576111
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 686899999999999999
Q gi|254780506|r 269 VGPMTIAMLMANTVIAAY 286 (306)
Q Consensus 269 VGp~Tva~L~~N~v~aa~ 286 (306)
+--=.-..--+|++.--+
T Consensus 314 ~a~~aS~LYa~Nl~~~l~ 331 (356)
T COG3288 314 LAAQASQLYATNLVNLLK 331 (356)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 022588999987999999
No 212
>PRK05717 oxidoreductase; Validated
Probab=91.98 E-value=0.19 Score=30.93 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=24.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHC-CCCCCCEEE
Q ss_conf 9996798678999999999999839700002474111-2266999999852-312212588
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLN-KDDSIHGIL 95 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN-~d~~V~GIl 95 (306)
++..+-|++ .-.+.++++|-+...+. -|+ +++++.+.+++.- .-..+|.++
T Consensus 37 V~i~~~~~~------~~~~~~~~~~~~~~~~~--~Dvt~~~~v~~~i~~~~~~~G~id~lv 89 (255)
T PRK05717 37 VVLADLDRE------RGAKVAKALGENAWFIA--MDVADEAQVAAGVAEVLGQFGRLDALV 89 (255)
T ss_pred EEEEECCHH------HHHHHHHHHCCCEEEEE--EECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999969889------99999998489758999--307999999999999999829998999
No 213
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.90 E-value=0.17 Score=31.18 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 246765347764223573652244321220104766
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~g 226 (306)
.+..|+.|......-.|=|.++ .|++++.+|++.-
T Consensus 161 v~~~t~sLa~Ela~~GIrVn~V-~PG~V~T~m~r~a 195 (296)
T PRK05872 161 VEAFANALRLEVAHRGVSVGSA-YLSWIDTDLVRDA 195 (296)
T ss_pred HHHHHHHHHHHHHHHCCEEEEE-ECCCCCCCCCCCC
T ss_conf 9999999999840019389999-7088977567476
No 214
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=91.87 E-value=0.47 Score=28.17 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHH---HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 887567667999999998---678772001289961644203468999986204533
Q gi|254780506|r 136 TTGLVPCTPAGAILLIEQ---FKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVT 189 (306)
Q Consensus 136 ~~~~~PcTp~av~~ll~~---y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVt 189 (306)
+.+..-+|-.|++..++. ..+.+++|++++|=|-++ ||.-.|.+|.+.||.|.
T Consensus 10 s~gR~eATG~Gv~~~~~~~~~~~~~~l~g~~vaIQGfGn-VG~~aA~~l~e~GakvV 65 (254)
T cd05313 10 SLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVV 65 (254)
T ss_pred CCCCCCEEHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEE
T ss_conf 868775010889999999999679695899999989779-99999999997799799
No 215
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.86 E-value=0.2 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 67653477642235736522443212201047
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
..|+.+......-.|=|-++ .|+++..+|.+
T Consensus 166 ~lTr~lA~e~a~~gIrVNaI-~PG~i~T~~~~ 196 (259)
T PRK07063 166 GLTRALGIEYAARNVRVNAI-APGYIETQLTE 196 (259)
T ss_pred HHHHHHHHHHHHHCEEEEEE-EECCCCCHHHH
T ss_conf 99999999971419299989-76779877689
No 216
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=91.77 E-value=0.17 Score=31.25 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 467653477642235736522443212201047
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+..|+.+......-.|-|-++ .|+++..+|.+
T Consensus 157 ~~lt~~lA~el~~~gIrVN~V-~PG~v~T~~~~ 188 (253)
T PRK08220 157 TSLTKCVGLELAPYGVRCNVV-SPGSTDTDMQR 188 (253)
T ss_pred HHHHHHHHHHHHHHCEEEEEE-ECCCCCCHHHH
T ss_conf 999999999954309599999-60889874455
No 217
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.75 E-value=0.21 Score=30.64 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=23.2
Q ss_pred CCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 203468-999986204533124676534776422357365224432122010476
Q gi|254780506|r 172 LFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 172 ~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
..|.|- +.+-..|.|... -|+.+....-.-.|-|=++. |+++..+|.++
T Consensus 149 ~~~~~~~~~Y~asKaai~~----ltr~lA~e~a~~~IrvN~Ia-PG~i~T~~~~~ 198 (254)
T PRK08085 149 ELGRDTITPYAASKGAVKM----LTRGMCVELARHNIQVNGIA-PGYFKTEMTKA 198 (254)
T ss_pred CCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCCCEEEEEEE-ECCCCCHHHHH
T ss_conf 4478985678999999999----99999999672796999997-68898710210
No 218
>PRK07479 consensus
Probab=91.71 E-value=0.21 Score=30.64 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=67.1
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCC-CCCCCEEEEECC---CCCCHHHHHHHH
Q ss_conf 9996798678999999999999839700002474111-22669999998523-122125888346---887113788986
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNK-DDSIHGILVQLP---LPSTVSEQSIIQ 111 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~-d~~V~GIlvQlP---LP~~id~~~i~~ 111 (306)
+++.+-+++.. +...+..++.|-++..+.. |+ +++++.+.+++..+ -..+|.++---- .+..+.+
T Consensus 32 V~i~~~~~~~~---~~~~~~l~~~g~~~~~~~~--Dv~~~~~~~~~~~~~~~~~G~iD~lVnnAG~~~~~~~~~~----- 101 (252)
T PRK07479 32 VVVADLNAAAA---ERVASEIADAGGNAIAVAA--DVSRGADVEALVEAALEAFGRVDIVVNNAGTTHRNKPMLD----- 101 (252)
T ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH-----
T ss_conf 99997989999---9999999853997899992--5899999999999999981998599989976689988276-----
Q ss_pred HCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHH-HHHHHHHCCCEE
Q ss_conf 068743513215533888730477887567667999999998678772001289961-644203468-999986204533
Q gi|254780506|r 112 SIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPM-GQLLLSRNATVT 189 (306)
Q Consensus 112 ~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pl-a~lL~~~~atVt 189 (306)
+++ .|.|-.-..|+ ...|. ++ .+++..+++- + .| .++.++ -+...+.|- +.+-..+.|..
T Consensus 102 -~~~-~~~~~~~~vNl--------~~~~~-~~-~~~~p~m~~~-~---~G-~Iv~isS~~~~~~~~~~~~Y~asKaal~- 163 (252)
T PRK07479 102 -VTE-AEFDRVYAVNV--------KSIYL-ST-RHFVPHFRAQ-G---GG-VIINIASTAGVRPRPGLTWYNASKGAVI- 163 (252)
T ss_pred -CCH-HHHHHHHHHHH--------HHHHH-HH-HHHHHHHHHC-C---CC-EEEEEECHHHCCCCCCCCHHHHHHHHHH-
T ss_conf -999-99999999986--------31056-54-4404989867-9---97-2999804876689999717999999999-
Q ss_pred ECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 124676534776422357365224432122010476
Q gi|254780506|r 190 MAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 190 i~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
..|+.+......-.|-|-++ .|+++..+|..+
T Consensus 164 ---~ltr~lA~el~~~gIrVN~I-~Pg~~~T~~~~~ 195 (252)
T PRK07479 164 ---TATKAMAAELAPDNIRVNCL-NPVAGETGLLTE 195 (252)
T ss_pred ---HHHHHHHHHHHHHCEEEEEE-ECCCCCCHHHHH
T ss_conf ---99999999951409699999-669787657887
No 219
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.66 E-value=0.34 Score=29.14 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=22.9
Q ss_pred HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9999862045331246765347764223573652244321220104
Q gi|254780506|r 178 GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 178 a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
+.+-..|.|-. .-|+.+......--|-|-|+ .|+++..+|.
T Consensus 149 ~~Y~asKaav~----~ltr~lA~ela~~gIrVNaV-aPG~i~T~~~ 189 (254)
T PRK06463 149 TFYAITKAGII----MLTKRLAFELGKYGIRVNAV-APGWIETDMT 189 (254)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCCC
T ss_conf 78899999999----99999999970239599999-8688987653
No 220
>PRK07806 short chain dehydrogenase; Provisional
Probab=91.65 E-value=0.25 Score=30.04 Aligned_cols=32 Identities=3% Similarity=0.007 Sum_probs=15.1
Q ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999839700002474111226699999985
Q gi|254780506|r 53 KTRMAKHCGFHSVQYNFPVDISQIDLENAVLSL 85 (306)
Q Consensus 53 K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~L 85 (306)
..+..++.|.+...+...- .+++++.+.+++.
T Consensus 47 ~~~~i~~~g~~a~~~~~Dv-td~~~v~~l~~~~ 78 (248)
T PRK07806 47 VVAEIRAAGGRASAVGADL-TDEASVAALMDAI 78 (248)
T ss_pred HHHHHHHCCCEEEEEECCC-CCHHHHHHHHHHH
T ss_conf 9999996198399997899-9999999999999
No 221
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.65 E-value=0.24 Score=30.17 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 999999998678772001289961644203468-9999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..+..- + .|.=|-|--.+-..|.|- +.+-..|.|-+ .-|+.+......-.|-|-++ .|+++..+|.
T Consensus 129 ~~~~~~m~~~-~---~G~IInisS~~~~~~~~~~~~Y~asKaav~----~ltrslA~ela~~gIrVNaV-aPG~i~T~~~ 199 (255)
T PRK06841 129 QAVGRHMIAA-G---GGKIVNLASQAGVVALERHVAYCASKAGVV----GMTKVLALEWGPHGITVNAI-SPTVVLTELG 199 (255)
T ss_pred HHHHHHHHHC-C---CCEEEEEECHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCHH
T ss_conf 9999999982-9---965999946665668998588999999999----99999999970309599998-5388977034
Q ss_pred CC
Q ss_conf 76
Q gi|254780506|r 224 KT 225 (306)
Q Consensus 224 k~ 225 (306)
+.
T Consensus 200 ~~ 201 (255)
T PRK06841 200 KK 201 (255)
T ss_pred HH
T ss_conf 33
No 222
>PRK06346 consensus
Probab=91.57 E-value=0.22 Score=30.45 Aligned_cols=70 Identities=24% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9999999986787720012899616442034689-999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..+... + .|.=+-|---+...|.|.. .+-..|.|- +.-|+.+.....+..|-|-++ .|+++..+|.
T Consensus 123 ~~~~p~m~~~-~---~G~IInisS~~~~~~~~~~~~Y~asK~al----~~ltr~lA~e~a~~gIrvN~I-~PG~i~T~~~ 193 (251)
T PRK06346 123 RKALPIFEEK-G---SGVIVNIASVGGLNGSRAGAAYTASKHAV----IGLTKNTGFMYANKGIRCNAI-APGAVNTNIG 193 (251)
T ss_pred HHHHHHHHHC-C---CCEEEEEECHHHCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHCCEEEEEE-EECCCCCCHH
T ss_conf 9999999985-9---95499994565478898875899999999----999999999862419599998-7688977233
No 223
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.52 E-value=0.25 Score=30.08 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH---HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 99999999867877200128996164420346---899998620453312467653477642235736522443212201
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKP---MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVD 221 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~P---la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~ 221 (306)
.+++..++.- + .| +++-++ |.....| .+.+-..|.|-. .-|+.+......-.|-|-|+- |++++..
T Consensus 128 ~~~~~~m~~~-~---~G-~Iinis-S~~~~~~~~~~~~Y~asKaal~----~ltr~lA~ela~~gIrVN~I~-PG~i~t~ 196 (254)
T PRK08642 128 QAALPGMRER-G---FG-RIINIG-TNLFQNPVVPYHDYTAAKAALL----SLTRTLAADLGPYGITVNMVS-GGLLRTT 196 (254)
T ss_pred HHHHHHHHHC-C---CC-CEEEEC-CHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEEC-CCCCCCC
T ss_conf 9999977874-8---99-668860-0331588876037789999999----999999999713396998874-5554676
Q ss_pred CC
Q ss_conf 04
Q gi|254780506|r 222 WI 223 (306)
Q Consensus 222 ~v 223 (306)
+.
T Consensus 197 ~~ 198 (254)
T PRK08642 197 DA 198 (254)
T ss_pred CC
T ss_conf 65
No 224
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.38 E-value=0.23 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 467653477642235736522443212201047
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+..|+.|......-.|=|.++- |+++..+|..
T Consensus 160 ~~lt~~la~El~~~gIrVn~v~-PG~v~T~~~~ 191 (235)
T PRK07326 160 LGLSEALMLDLRDYDVRVSTIM-PGSVATHFNG 191 (235)
T ss_pred HHHHHHHHHHHCCCCEEEEEEE-ECCEECCCCC
T ss_conf 9999999998474694999998-0589078889
No 225
>PRK12827 short chain dehydrogenase; Provisional
Probab=91.35 E-value=0.31 Score=29.45 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 4203468-99998620453312467653477642235736522443212201047
Q gi|254780506|r 171 NLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 171 ~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
-..|.|- +.+-..|.|-. .-|+.+......-.|-|-|+ .|+++..+|.+
T Consensus 150 ~~~~~~~~~~Y~asKaav~----~lTr~lA~e~a~~gIrVNaV-~PG~i~T~~~~ 199 (251)
T PRK12827 150 GVRGNRGQVNYAASKAGLI----GLTKTLANELAPRGITVNAV-APGAINTPMAD 199 (251)
T ss_pred HCCCCCCCHHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEE-EECCCCCHHHH
T ss_conf 3557898688999999999----99999999965049699999-64889872011
No 226
>KOG0725 consensus
Probab=91.33 E-value=0.29 Score=29.65 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=30.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHH
Q ss_conf 77200128996164420346899998620453312467653477
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPE 200 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~ 200 (306)
..+.||.+.|-|.|+=.|+.+|..|...||+|++|-+....+.+
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~ 47 (270)
T KOG0725 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEE 47 (270)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 55688789997999815899999999879989998454566677
No 227
>PRK06194 hypothetical protein; Provisional
Probab=91.28 E-value=0.24 Score=30.26 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCH---HHH-HHHHHHHCCCEEECCCCCCCHHHHHHH--CCEEEEECCCCCCC
Q ss_conf 999999998678772001289961644203---468-999986204533124676534776422--35736522443212
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFG---KPM-GQLLLSRNATVTMAHSKTKNLPEICRT--ADILVVAVGRPRMV 218 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG---~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~--ADivIsAvG~p~~i 218 (306)
.+++-.+... +-.-.++.-.||+-|.+-| -|- +.+-..|.|-+ ..|+.|...++. ..|=|+++ .|+|+
T Consensus 123 r~~lP~M~~~-~~~~~~~~G~IVNisSiaG~~~~p~~~~Y~ASK~AV~----glT~sLa~EL~~~~~~IrV~~l-cPG~V 196 (301)
T PRK06194 123 RIFTPLMLAA-AEKDPAYEGHIVNTASMAGLLAPPAMGVYNVSKHAVV----SLTETLYQDLRLVTDQVGASVL-CPYFV 196 (301)
T ss_pred HHHHHHHHHC-CCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHCCCCEEEEEE-ECCCC
T ss_conf 9999999976-8878898649999454232358999707899999999----9999999999756979799999-72888
Q ss_pred CCCCCC
Q ss_conf 201047
Q gi|254780506|r 219 QVDWIK 224 (306)
Q Consensus 219 ~~~~vk 224 (306)
+..+..
T Consensus 197 ~T~i~~ 202 (301)
T PRK06194 197 PTGIWQ 202 (301)
T ss_pred CCCCCC
T ss_conf 788674
No 228
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.25 E-value=0.34 Score=29.20 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECC-----------CCCCHHHHHHHHH
Q ss_conf 9999999986787720012899616-----------4420346899998
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGR-----------SNLFGKPMGQLLL 182 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGr-----------s~~VG~Pla~lL~ 182 (306)
+.-..+=+++ +++-+.-++-|+|- ..+=|+|+..++.
T Consensus 161 R~r~~ia~~l-~v~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~ 208 (322)
T PTZ00082 161 RMKYYIAQKL-GVNPRDVHASVIGAHGDSMVPLTSYVTVGGIPLQEFIE 208 (322)
T ss_pred HHHHHHHHHH-CCCHHHEEEEEEECCCCCEEEEEEEEEECCEEHHHHHC
T ss_conf 9999999984-98877727677614688268742222798898688631
No 229
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=91.25 E-value=0.85 Score=26.42 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC----------------CCHHHHH
Q ss_conf 567667999999998678772001289961644203468999986204533124676----------------5347764
Q gi|254780506|r 139 LVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT----------------KNLPEIC 202 (306)
Q Consensus 139 ~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T----------------~~l~~~~ 202 (306)
++||+...++..+++. + --.|.+|+|.|-+.-||.-..+++...||+|+...+.. .+..+..
T Consensus 143 ~~~~~~~t~~~al~~~-~-~~~g~~VlI~Ga~G~vG~~aiqlak~~Ga~vi~v~~~~~k~~~~~~~~~~~i~~~~~~~~~ 220 (332)
T PRK13771 143 IAACVTGMIYRGLRRA-G-VSEGETVLVTGAGGGVGIHAVQVAKAYGAKVIAVTTSESKAKAVGKYADYVIVGSKFSEEV 220 (332)
T ss_pred HHHHHHHHHHHHHHHH-C-CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCHHHHH
T ss_conf 8767889999999971-9-9999999997787758999999999869989999499999999985699898363057888
Q ss_pred ---HHCCEEEEECCCCCCCC-CCCCCCCCEEEEEEE
Q ss_conf ---22357365224432122-010476626998311
Q gi|254780506|r 203 ---RTADILVVAVGRPRMVQ-VDWIKTGSLVIDVGI 234 (306)
Q Consensus 203 ---~~ADivIsAvG~p~~i~-~~~vk~gavvIDvGi 234 (306)
...|+++-++|.+.+-. -+.+++|..++-+|.
T Consensus 221 ~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~ 256 (332)
T PRK13771 221 KKLGGADIVIETVGGPTLEESLRSLNWGGKIVLIGN 256 (332)
T ss_pred HHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 734686389845766889988886258969999934
No 230
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent; InterPro: IPR010097 This entry represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exist in eukaryotes. In Saccharomyces cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=91.24 E-value=0.25 Score=30.05 Aligned_cols=65 Identities=26% Similarity=0.450 Sum_probs=46.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--CCC-------EEEC--------------------CCC-----------------CC
Q ss_conf 2899616442034689999862--045-------3312--------------------467-----------------65
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSR--NAT-------VTMA--------------------HSK-----------------TK 196 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~--~at-------Vti~--------------------hs~-----------------T~ 196 (306)
+|+|+|.|-=+|.|||.||... ..+ ||.. |-. -+
T Consensus 1 KVAVLGA~GGIGQpLSLLLK~~Lp~~slkesnrsvthi~L~LYDi~~ea~~GVa~DLSHI~T~~~v~gf~~~~~~hkrdP 80 (379)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQLPQVSLKESNRSVTHIELSLYDIKGEAAEGVAADLSHIDTAASVKGFSGEEGDHKRDP 80 (379)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 96898558642146899998517645752036505677765303456656764313442178645704468888865660
Q ss_pred CHHHHHHHCCEEEEECCC---CCCCCCCCCCCCC
Q ss_conf 347764223573652244---3212201047662
Q gi|254780506|r 197 NLPEICRTADILVVAVGR---PRMVQVDWIKTGS 227 (306)
Q Consensus 197 ~l~~~~~~ADivIsAvG~---p~~i~~~~vk~ga 227 (306)
-+++.++.||||+=-+|. ||+=+-|-|+=+|
T Consensus 81 ~l~~~L~~advVvIPAGVPRKPGMtRDDLF~~NA 114 (379)
T TIGR01772 81 ALENALKGADVVVIPAGVPRKPGMTRDDLFNVNA 114 (379)
T ss_pred CHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCH
T ss_conf 1488862795899817878875567556755041
No 231
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.13 E-value=0.32 Score=29.37 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=24.1
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99986204533124676534776422357365224432122010476
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.+-..|.|-+ ..|+.+......-.|-|-++ .|+++..+|.++
T Consensus 155 ~Y~asKaal~----~ltk~lA~Ela~~gIrVNaV-aPG~i~T~~~~~ 196 (247)
T PRK12935 155 NYSAAKAGML----GFTKSLALELAKTNVTVNAI-CPGFIDTEMVAE 196 (247)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCHHHHH
T ss_conf 9999999999----99999999971409699999-627788732230
No 232
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.09 E-value=0.24 Score=30.18 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=26.0
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCC-CCCCEEE
Q ss_conf 9996798678999999999999839700002474111226699999985231-2212588
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKD-DSIHGIL 95 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d-~~V~GIl 95 (306)
+++.+-+... .....+..++.|-++..++..- .+++++.+.+++..+. ..+|+.+
T Consensus 30 V~i~~r~~~~---l~~~~~~i~~~g~~~~~~~~Dv-~~~~~v~~~v~~~~~~~g~iDiLV 85 (254)
T PRK07677 30 VVITGRTKEK---LEEAKLEIEQFPGQVLTVQMDV-RNPDDVQKMIEQIDEKFGRIDALI 85 (254)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999699999---9999999985699099998038-999999999999999839988899
No 233
>PRK06057 short chain dehydrogenase; Provisional
Probab=91.08 E-value=0.36 Score=28.98 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=20.8
Q ss_pred HHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 998620453312467653477642235736522443212201047
Q gi|254780506|r 180 LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 180 lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+-..|.|-. .-|+.+....-.-.|-|-++ .|+++..+|.+
T Consensus 154 Y~asKaav~----~lTr~lA~e~a~~gIrVN~I-aPG~i~T~~~~ 193 (255)
T PRK06057 154 YTASKGGVL----AMSRELGVQFARQGIRVNAL-CPGPVNTPLLQ 193 (255)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCHHHH
T ss_conf 999999999----99999999860319399999-73879965777
No 234
>KOG1504 consensus
Probab=91.03 E-value=0.79 Score=26.61 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=57.4
Q ss_pred HHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8606874351321553388873047788756766799-999999867877200128996164420346899998620453
Q gi|254780506|r 110 IQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATV 188 (306)
Q Consensus 110 ~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atV 188 (306)
+..+.-.-|++.|--+.---+ .+..++.|.||-.+| .+.++|+| |-.+.|.+++-||.++.|=--+-+.-..-|-.+
T Consensus 140 ~ARV~khsDi~tlak~sSvPi-INgL~D~~HPlQ~laD~LTi~E~f-~ks~~glkvawiGD~NNvlhs~mia~ak~gih~ 217 (346)
T KOG1504 140 MARVNKHSDILTLAKYSSVPI-INGLCDHFHPLQILADLLTIIEHF-GKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIHF 217 (346)
T ss_pred HHHHHHHHHHHHHHHCCCCCE-ECCCCCCCCHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEE
T ss_conf 998762335999864268863-324202467489999999999987-343455079997265088999999863314378
Q ss_pred EECCC-------------------------CCCCHHHHHHHCCEEEEEC
Q ss_conf 31246-------------------------7653477642235736522
Q gi|254780506|r 189 TMAHS-------------------------KTKNLPEICRTADILVVAV 212 (306)
Q Consensus 189 ti~hs-------------------------~T~~l~~~~~~ADivIsAv 212 (306)
.+... -|.|..+-...|||+|+-+
T Consensus 218 s~atPkg~e~d~div~~akq~a~eNgsk~eltnDp~eA~~~anvlvtDt 266 (346)
T KOG1504 218 SCATPKGYEPDKDIVSKAKQAAEENGSKFELTNDPLEAVIGANVLVTDT 266 (346)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEH
T ss_conf 8528999885668999999998705877897458288634886799731
No 235
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.03 E-value=0.32 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=17.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC
Q ss_conf 72001289961644203468999986204533124
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~h 192 (306)
.|+||.++|-|-|.=+|+-+|..|.++||.|.++.
T Consensus 42 rL~GKvalVTGgs~GIG~aiA~~la~~GA~V~i~~ 76 (289)
T PRK06701 42 KLKGKVALITGGDSGIGRAVAVAFAKEGADIAIVY 76 (289)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77999899968257999999999998799899982
No 236
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.00 E-value=0.26 Score=30.00 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCEEEEECC-CCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 012899616-44203468-999986204533124676534776422357365224432122010476
Q gi|254780506|r 161 GQHAVVIGR-SNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 161 Gk~vvVvGr-s~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
|-+++.++- +-+++.|- +.+-..|.|-+ ..|+.|......-.|=|+++ .|++++.+|+..
T Consensus 135 ~G~IvntsS~agl~~~~~~~~Y~asK~av~----~lte~La~El~~~gI~V~~l-~Pg~V~T~m~~~ 196 (275)
T PRK05876 135 GGHVVFTASFAGLVPNAGLGAYGVAKYGVV----GLAETLAREVTADGIGVSVL-CPMVVETNLVAN 196 (275)
T ss_pred CCEEEEECCHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHCCEEEEE-ECCCCCCCCCCC
T ss_conf 949999686775389999746999999999----99999999851129389999-718899434668
No 237
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=90.96 E-value=0.27 Score=29.85 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=67.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9996798678999999999999839700002474111-226699999985231-22125888346887113788986068
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIV 114 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~ 114 (306)
++..+-+++ ...+.++++|-++..+.. |+ +++++.+.+++.-+. -.+| |+|-- .++....-+.-++
T Consensus 32 V~i~d~~~~------~~~~~~~~~g~~~~~~~~--Dvt~~~~v~~~v~~~~~~~G~iD-iLVNN---AGi~~~~~~~~~~ 99 (256)
T PRK07067 32 VVLADIKPA------RAALAALEIGPAAVAVSL--DVTRQDSIDRIVAAAVERFGGID-ILVNN---AALFDMAPILEIS 99 (256)
T ss_pred EEEEECCHH------HHHHHHHHHCCCEEEEEE--ECCCHHHHHHHHHHHHHHCCCCC-EEEEC---CCCCCCCCHHHCC
T ss_conf 999979889------999999981997599998--48999999999999999819998-99989---9889998813499
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC---CCHHHH-HHHHHHHCCCEEE
Q ss_conf 743513215533888730477887567667999999998678772001289961644---203468-9999862045331
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSN---LFGKPM-GQLLLSRNATVTM 190 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~---~VG~Pl-a~lL~~~~atVti 190 (306)
+ .|-|-.-..|+ ...|. || .+++..+... + .|- .||+-|. ..|.|- +.+-..|.|-
T Consensus 100 ~-e~~~~~~~vNl--------~g~f~-~~-~~~~~~m~~~-~---~~G--~IVnisS~~g~~~~~~~~~Y~asKaav--- 159 (256)
T PRK07067 100 R-DVYDRLFAVNV--------KGLFF-LM-QAVAQHMVEQ-G---RGG--KIINMASQAGRRGEALVSHYCATKAAV--- 159 (256)
T ss_pred H-HHHHHHHHHHH--------HHHHH-HH-HHHHHHHHHC-C---CCC--EEEEEEEHHHCCCCCCCHHHHHHHHHH---
T ss_conf 9-99999999851--------77899-99-9999999980-8---995--599984164366898866899999999---
Q ss_pred CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 2467653477642235736522443212201047
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+..|+.+....-.-.|-|-|+ .|+++..+|.+
T Consensus 160 -~~lTr~lA~ela~~gIrVNaV-~PG~i~T~m~~ 191 (256)
T PRK07067 160 -ISYTQSAALALARHGINVNAI-APGVVDTPMWD 191 (256)
T ss_pred -HHHHHHHHHHHHHCCEEEEEE-EECCCCCCCHH
T ss_conf -999999999970429289999-54888886144
No 238
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=90.95 E-value=0.2 Score=30.73 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 76534776422357365224432122010
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
-|+.+....-.--|=|-++- |+++..++
T Consensus 172 ltr~lA~ela~~gIrVN~I~-PG~i~T~~ 199 (259)
T PRK07370 172 SVRYLAAELGPENIRVNAIS-AGPIRTLA 199 (259)
T ss_pred HHHHHHHHHCCCCEEEEEEE-ECCCCCCH
T ss_conf 99999998371887999986-36685512
No 239
>PRK08264 short chain dehydrogenase; Validated
Probab=90.88 E-value=0.48 Score=28.12 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 2467653477642235736522443212201047
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.++.|+.|........|-|.++ .|++++.+|.+
T Consensus 150 l~~~~~~La~El~~~gI~V~~i-~PG~v~T~m~~ 182 (235)
T PRK08264 150 AWSLTQALREELAPQGTRVLGV-HPGYIDTDMTA 182 (235)
T ss_pred HHHHHHHHHHHHHHHCCEEEEE-EECCCCCCCCC
T ss_conf 9999999999850329389999-72899967679
No 240
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.88 E-value=0.48 Score=28.13 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 99998620453312467653477642235736522443212201047
Q gi|254780506|r 178 GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 178 a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+.+-..|.|-+ ..|+.+......-.|-|-|+ .|+++..+|..
T Consensus 139 ~~Y~asKaal~----~lTrslA~ela~~gIrVNaV-aPG~i~T~m~~ 180 (237)
T PRK06550 139 VAYTASKHALA----GFTKQLALDYAKDGIQVFGI-APGAIKTPMNA 180 (237)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEE-EECCCCCCCHH
T ss_conf 88999999999----99999999965019599999-76889873201
No 241
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=90.85 E-value=0.76 Score=26.75 Aligned_cols=53 Identities=30% Similarity=0.386 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHH---CCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 875676679999999986---7877-20012899616442034689999862045331
Q gi|254780506|r 137 TGLVPCTPAGAILLIEQF---KGCD-LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTM 190 (306)
Q Consensus 137 ~~~~PcTp~av~~ll~~y---~~i~-l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti 190 (306)
.+...+|..|++..++.. .+.+ ++||+++|-|-++ ||.-+|.+|.+.||.|..
T Consensus 4 ~gR~eATg~Gv~~~~~~~~~~~~~~~l~g~~v~IqGfGn-VG~~~a~~l~~~Gakvva 60 (237)
T pfam00208 4 LGRPEATGYGVVYFVEEALKKLGGDSLEGKTVAVQGFGN-VGSYAAEKLLELGAKVVA 60 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEE
T ss_conf 999834189999999999997499987899999989889-999999999987996999
No 242
>PRK10637 cysG siroheme synthase; Provisional
Probab=90.84 E-value=0.64 Score=27.25 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=18.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 9996798678999999999999839700002474111
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI 73 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~ 73 (306)
+|-..||++-. +...+.|++.||-++...-|+.+
T Consensus 76 ViaATdd~~vn---~~i~~~a~~~~ilVNvvD~p~lc 109 (457)
T PRK10637 76 AIAATDDDAVN---QRVSEAAEARRIFCNVVDAPKAA 109 (457)
T ss_pred EEEECCCHHHH---HHHHHHHHHCCCEEEECCCCCCC
T ss_conf 99906999999---99999999829868845882448
No 243
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.81 E-value=0.3 Score=29.55 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=11.1
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 6765347764223573652244321220
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQV 220 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~ 220 (306)
..|+.+....-+-.|-|-++ .|+++..
T Consensus 161 ~ltk~lA~e~~~~gIrvN~V-~PG~i~T 187 (260)
T PRK06523 161 TYSKSLSKEVAPKGVRVNRV-SPGWIET 187 (260)
T ss_pred HHHHHHHHHHHHHCEEEEEE-EECCCCC
T ss_conf 99999999973439299999-6488987
No 244
>PRK06227 consensus
Probab=90.80 E-value=0.31 Score=29.42 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=65.1
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9996798678999999999999839700002474111-226699999985231-22125888346887113788986068
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIV 114 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~ 114 (306)
+++.+-++.... ...+..++.|.++..+.. |+ +++++.+.+++.-+. -.+|..+==- + +.
T Consensus 32 V~i~~~~~~~~~---~~~~~~~~~g~~~~~~~~--Dvs~~~~v~~~~~~~~~~~G~iDiLVNNA----G---------i~ 93 (256)
T PRK06227 32 VVIADIDEEAGL---EREEMLRSNGLDALFVKT--DVSDEEDVKNMVRKTVERYGGIDILINNA----G---------IF 93 (256)
T ss_pred EEEEECCHHHHH---HHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCEEEECC----C---------CC
T ss_conf 999969888999---999999955991899981--68999999999999999829997999899----8---------99
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCEEECCC
Q ss_conf 74351321553388873047788756766799999999867877200128996164420346-89999862045331246
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKP-MGQLLLSRNATVTMAHS 193 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~P-la~lL~~~~atVti~hs 193 (306)
+.+.++-++....-+++.-+....|. |+ .+++..++.- + .|.=|-|-.-+-..|.| .+.+-..|.|-+ .
T Consensus 94 ~~~~~~~~~~e~w~~~~~vNl~g~f~-~~-~~~~p~m~~~-~---~G~IVnisS~~~~~~~~~~~~Y~asKaav~----~ 163 (256)
T PRK06227 94 SGKSIFERTLEEWERVIRVNLTGPYL-CS-KYAAEEMIKN-G---GGVIINIASTRAFQSEPNTEPYSASKGGII----A 163 (256)
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHC-C---CCEEEEECCHHHCCCCCCCHHHHHHHHHHH----H
T ss_conf 99890349899999999998299999-99-9999999984-9---977999622554568998688999999999----9
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 7653477642235736522443212201047
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
-|+.+....-...|=|-|+ .|+++..++.+
T Consensus 164 lTr~lA~ela~~gIrVNaV-aPG~i~T~~~~ 193 (256)
T PRK06227 164 LTHSLAVSLSKYKIRVVSI-SPGWIETSEWK 193 (256)
T ss_pred HHHHHHHHHCCCCEEEEEE-ECCCCCCCCCC
T ss_conf 9999999962029499999-61869665000
No 245
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.77 E-value=1.1 Score=25.76 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC-------------------CCHH
Q ss_conf 567667999999998678772001289961644203468999986204533124676-------------------5347
Q gi|254780506|r 139 LVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT-------------------KNLP 199 (306)
Q Consensus 139 ~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T-------------------~~l~ 199 (306)
-+|++..-+..+|..+.+... |.+++|.|-|.=||.=+.+|+...|+++.+.-+.+ .++.
T Consensus 122 ~l~~~~~TA~~~l~~~~~l~~-g~~VLv~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~d~~ 200 (326)
T COG0604 122 ALPLAGLTAWLALFDRAGLKP-GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFV 200 (326)
T ss_pred HCCCHHHHHHHHHHHHCCCCC-CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 522306769999997617699-9979997785469999999999849958999817578899987399889705642489
Q ss_pred HHHH------HCCEEEEECCCCCCCC-CCCCCCCCEEEEEEEE
Q ss_conf 7642------2357365224432122-0104766269983111
Q gi|254780506|r 200 EICR------TADILVVAVGRPRMVQ-VDWIKTGSLVIDVGIN 235 (306)
Q Consensus 200 ~~~~------~ADivIsAvG~p~~i~-~~~vk~gavvIDvGi~ 235 (306)
+..+ ..|+++-.+|.+.|-. -..++++-.++.+|..
T Consensus 201 ~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 201 EQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9999983799878899798679999999974259589998068
No 246
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.67 E-value=0.4 Score=28.69 Aligned_cols=17 Identities=0% Similarity=-0.107 Sum_probs=9.6
Q ss_pred CCCCCCCEEEEEEEEEC
Q ss_conf 10476626998311111
Q gi|254780506|r 221 DWIKTGSLVIDVGINRI 237 (306)
Q Consensus 221 ~~vk~gavvIDvGi~~~ 237 (306)
+||.-..+.||-|--.+
T Consensus 238 s~ITGq~l~VdGG~v~~ 254 (303)
T PRK07792 238 AGVNGQLFIVYGPQVTL 254 (303)
T ss_pred CCCCCCEEEECCCEEEE
T ss_conf 69879879986999997
No 247
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=90.65 E-value=0.97 Score=25.99 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=19.7
Q ss_pred CCHHHHHH--HCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53477642--235736522443212201047662
Q gi|254780506|r 196 KNLPEICR--TADILVVAVGRPRMVQVDWIKTGS 227 (306)
Q Consensus 196 ~~l~~~~~--~ADivIsAvG~p~~i~~~~vk~ga 227 (306)
.+|.+.++ ++|++|-.-|.++.|+.++||.-+
T Consensus 96 ~~L~e~v~~~kptvLIG~S~~~g~Fteevv~~Ma 129 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXA 129 (254)
T ss_pred CCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 9999999863998899958998988999999776
No 248
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=90.60 E-value=0.4 Score=28.68 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=12.4
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 676534776422357365224432122010
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.-|+.+......- |=|-|+ .|+++..+|
T Consensus 164 ~ltr~lA~e~~~~-IRVNaV-~PG~i~T~~ 191 (262)
T TIGR03325 164 GLVKELAFELAPY-VRVNGV-APGGMSSDL 191 (262)
T ss_pred HHHHHHHHHHCCC-CEEEEE-EECCCCCCC
T ss_conf 9999999997599-789999-537888798
No 249
>PRK09526 lacI lac repressor; Reviewed
Probab=90.53 E-value=1.7 Score=24.37 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=60.4
Q ss_pred EEECHHH-HHHHHHHHHHHHHHHHHHHCCCCC------------EEEEEEECC--CHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 5005389-999999999999999998369997------------599999679--8678999999999999839700002
Q gi|254780506|r 3 SLIDGKV-VASVLTDKIAESVAFLKKETGVQV------------GLAVVLVGN--DPASCSYVSAKTRMAKHCGFHSVQY 67 (306)
Q Consensus 3 ~iLdGk~-iA~~i~~~lk~~i~~l~~~~g~~P------------~LavIlvGd--dpaS~~Yv~~K~K~a~~lGI~~~~~ 67 (306)
..|+|++ ++++.++++.+.++.+ |..| +...+.+.+ ++....+++.....|++.|....+.
T Consensus 24 rvLn~~~~vs~~tr~rV~~~a~el----gY~pn~~Ar~l~~~~t~~Igli~~~i~~~~~~~~~~~i~~~~~~~gy~~~l~ 99 (342)
T PRK09526 24 RVLNQASHVSAKTREKVEAAMAEL----NYVPNRVAQQLAGKQSLTIGLVTTSLALHAPSQIAAAIKSRADQLGYSVVIS 99 (342)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 997897999999999999999983----9997888887513887279999346665247999999999999869969999
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH
Q ss_conf 4741112266999999852312212588834688711
Q gi|254780506|r 68 NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV 104 (306)
Q Consensus 68 ~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i 104 (306)
... +..++++...++.|.. ..|+|+|+..|+...-
T Consensus 100 ~~~-~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~~ 134 (342)
T PRK09526 100 MVE-RSGVEACQAAVNELLA-QRVSGVIINVPLEDAD 134 (342)
T ss_pred ECC-CCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHH
T ss_conf 688-9808999999999996-6988899956888448
No 250
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=90.50 E-value=0.39 Score=28.75 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=17.3
Q ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999839700002474111226699999985
Q gi|254780506|r 52 AKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSL 85 (306)
Q Consensus 52 ~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~L 85 (306)
...+..++.|.++..++.. =.+++++.+.+++.
T Consensus 47 ~~~~~~~~~g~~~~~~~~D-v~~~~~v~~~v~~~ 79 (261)
T PRK08936 47 DVAEEIKKVGGEAIAVKGD-VTVESDVVNLIQSA 79 (261)
T ss_pred HHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHH
T ss_conf 9999999659938999827-99999999999999
No 251
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.48 E-value=1.7 Score=24.35 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=63.1
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCC---------CHHHHHHHHHHHCCCEEECCC--------------CCCCHHHH
Q ss_conf 9999999986787720012899616442---------034689999862045331246--------------76534776
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNL---------FGKPMGQLLLSRNATVTMAHS--------------KTKNLPEI 201 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~---------VG~Pla~lL~~~~atVti~hs--------------~T~~l~~~ 201 (306)
.-+.+++..+.+ +.||++.|.|-+-= --.++..+|..+||.|..... ...+..+.
T Consensus 296 ~~~~~~i~~~~~--l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~ 373 (414)
T COG1004 296 DKLAEKILNHLG--LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEA 373 (414)
T ss_pred HHHHHHHHHHCC--CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEECCHHHH
T ss_conf 999999998468--778679999874169984200031799999999779989997825437777307871674899999
Q ss_pred HHHCCEEEEECCCCCCCCCCCCC---CCCEEEE
Q ss_conf 42235736522443212201047---6626998
Q gi|254780506|r 202 CRTADILVVAVGRPRMVQVDWIK---TGSLVID 231 (306)
Q Consensus 202 ~~~ADivIsAvG~p~~i~~~~vk---~gavvID 231 (306)
.+.||++|.+..-..|-..+|-+ .+.+|+|
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~~m~~~~v~D 406 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKLLMKTPVVID 406 (414)
T ss_pred HHHCCEEEEECCHHHHHCCCHHHHHCCCCEEEE
T ss_conf 840989999555798755575665025877986
No 252
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=90.45 E-value=0.26 Score=30.00 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999867877200128996164420346-89999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..+.+- + .|.=|-|--.+-..|.| .+.+-..|.|-. .-|+.+....-.-.|=|-|+ .|+++..+++
T Consensus 126 ~~~~p~m~~~-~---~G~IVnisS~~g~~g~~~~~~Y~asKaav~----~ltr~lA~ela~~gIrVNaV-~PG~i~t~~~ 196 (266)
T PRK06171 126 QAVARQMVKQ-H---DGVIVNMSSEAGLEGSEGQSCYAATKAAVN----SFTRSWAKELGKHGIRVVGV-APGILEATGL 196 (266)
T ss_pred HHHHHHHHHC-C---CCEEEEECCHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCCC
T ss_conf 9999999983-9---957998057775678987589999999999----99999999984549599998-3177166545
Q ss_pred C
Q ss_conf 7
Q gi|254780506|r 224 K 224 (306)
Q Consensus 224 k 224 (306)
+
T Consensus 197 ~ 197 (266)
T PRK06171 197 R 197 (266)
T ss_pred C
T ss_conf 6
No 253
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.43 E-value=0.37 Score=28.89 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=63.7
Q ss_pred EEE-CCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 996-798678999999999999839700002474111-226699999985231-22125888346887113788986068
Q gi|254780506|r 38 VLV-GNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILVQLPLPSTVSEQSIIQSIV 114 (306)
Q Consensus 38 Ilv-GddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlvQlPLP~~id~~~i~~~I~ 114 (306)
++. +.++.. .+...+.+++.|.++..+.. |+ +++++.+.+++.-+. ..+|.++=--- ..
T Consensus 32 vi~~~~~~~~---~~~~~~~~~~~g~~~~~~~~--Dv~d~~~v~~~~~~~~~~~G~iDiLVnnAg-------------~~ 93 (250)
T PRK08063 32 AINYARSRKA---AEETANEIEQLGRKALVVKA--NVGDVEKIKEMFSQIDEHFGRLDVFVNNAA-------------SG 93 (250)
T ss_pred EEECCCCHHH---HHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCEEEECCC-------------CC
T ss_conf 9975999899---99999999954995899984--799999999999999998099889998785-------------67
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCC
Q ss_conf 743513215533888730477887567667999999998678772001289961644203468-9999862045331246
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHS 193 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs 193 (306)
+.+++.-++..+.-+.+.-+....| -|+ .+++..++.. + .|.=+-+-.-+..-|.|- +.+-..+.|-. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~vNl~~~~-~~~-~~~~~~m~~~-~---~G~IVnisS~~~~~~~~~~~~Y~asKaal~----~ 163 (250)
T PRK08063 94 VLRPAMELEESHWDWTMNINAKALL-FCA-QEAAKLMEKN-G---GGKIISLSSLGSIRYLENYTTVGVSKAALE----A 163 (250)
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHC-C---CCCCEEEEEHHHCCCCCCCCHHHHHHHHHH----H
T ss_conf 8899266999999999987403799-999-9999999863-8---986158873310567899604587899999----9
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 7653477642235736522443212201047
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
-|+.+......-.|-|-|+ .|+++..+|.+
T Consensus 164 ltk~lA~ela~~gIrVNaI-~PG~i~T~~~~ 193 (250)
T PRK08063 164 LTRYLAVELAPKGIAVNAV-SGGAVDTDALK 193 (250)
T ss_pred HHHHHHHHHHHHCCEEEEE-ECCCCCCHHHH
T ss_conf 9999999972539289998-60879876776
No 254
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=90.33 E-value=0.33 Score=29.23 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC----CHHHCCH
Q ss_conf 999999999983970000247411122669999998523122125888346887113788986068743----5132155
Q gi|254780506|r 49 YVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEK----DVDGLHV 124 (306)
Q Consensus 49 Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~K----DVDGl~~ 124 (306)
|-....++|-+.|..+....+. .++. ..+++-..+..+ -+++.+=+-++++.--...+++-.+ -++++.
T Consensus 79 ~~~~i~~~c~~~g~~yvd~s~~----~~~~-~~l~~~a~~ag~-~~~~~~G~~PGi~~~~a~~~~~~l~~~~~~i~~~~- 151 (384)
T pfam03435 79 LSLTVLKACIETGVHYVDTSYL----REAQ-LALHEKAKEAGV-TAVLGCGFDPGLVSVFAKYALDDLADELAKVLSVK- 151 (384)
T ss_pred HCHHHHHHHHHCCCCEEECCCC----HHHH-HHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-
T ss_conf 1699999999739975753436----6889-999997765696-89967888988468999999999875258289999-
Q ss_pred HHHHHH
Q ss_conf 338887
Q gi|254780506|r 125 VNAGKV 130 (306)
Q Consensus 125 ~N~g~l 130 (306)
.+.|.+
T Consensus 152 ~~~Gg~ 157 (384)
T pfam03435 152 IHCGGR 157 (384)
T ss_pred EECCCC
T ss_conf 842688
No 255
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.26 E-value=0.38 Score=28.86 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 9998620453312467653477642235736522443212201047
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.+-..|.|-+ .-|+.+......-.|-|-|+ .|+++..++.+
T Consensus 162 ~Y~asKaav~----~lTr~lA~e~a~~gIrVNaV-aPG~i~T~~~~ 202 (258)
T PRK06935 162 PYTASKHGVA----GLTKAFANELAAYNIQVNAI-APGYIKTANTA 202 (258)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCCCC
T ss_conf 6999999999----99999999972269899998-54889786501
No 256
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.25 E-value=0.62 Score=27.38 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEC-----------CCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHH-CCEEEEEC
Q ss_conf 999999998678772001289961-----------644203468999986204533124676534776422-35736522
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIG-----------RSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRT-ADILVVAV 212 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvG-----------rs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~-ADivIsAv 212 (306)
+.-..+=+++ +++.+.-++.|+| +..+-|+|+..++...+.+ +..-.++.+.+++ +.-||.+-
T Consensus 149 R~~~~ia~~l-~v~~~~V~~~ViGeHG~s~vp~~S~~~V~G~~l~~~~~~~~~~----~~~~~~i~~~v~~~g~~ii~~k 223 (306)
T cd05291 149 RLRRALAEKL-NVDPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLS----ELDLDEIEEDVRKAGYEIINGK 223 (306)
T ss_pred HHHHHHHHHH-CCCHHHCEEEEEECCCCCEEEEEEEEEECCEEHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999985-9995563346885468945621353048889899961246899----8899999999997688886136
Q ss_pred CCCCC--------CCCCCCCCCCEEEEEEEE
Q ss_conf 44321--------220104766269983111
Q gi|254780506|r 213 GRPRM--------VQVDWIKTGSLVIDVGIN 235 (306)
Q Consensus 213 G~p~~--------i~~~~vk~gavvIDvGi~ 235 (306)
|...| +...++++..-++-+++.
T Consensus 224 G~t~~~~a~a~~~i~~ail~d~~~v~~vs~~ 254 (306)
T cd05291 224 GATYYGIATALARIVKAILNDENAILPVSAY 254 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 7850158999999999996589807999998
No 257
>PRK12746 short chain dehydrogenase; Provisional
Probab=90.20 E-value=0.37 Score=28.91 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=19.5
Q ss_pred ECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHH
Q ss_conf 67986789999999999998397000024741112-2669999998
Q gi|254780506|r 40 VGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLS 84 (306)
Q Consensus 40 vGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~ 84 (306)
.+.+.. ..+...+.+++.|-++..++. |.+ ++++.+.++.
T Consensus 37 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~--Dv~~~~~~~~~~~~ 77 (254)
T PRK12746 37 YGRNKA---AADETIREIESNGGKAFLIEA--DLNSIDGVKKLVEQ 77 (254)
T ss_pred CCCCHH---HHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHH
T ss_conf 599989---999999999855992899975--77999999999999
No 258
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.14 E-value=1.3 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=13.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 001289961644203468999986
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLS 183 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~ 183 (306)
.|.++.+.|. +|.|++.+.+.
T Consensus 134 ~g~~~~~~GN---IG~p~~~~~l~ 154 (459)
T PRK02705 134 AGLNAPMCGN---IGYAACELALL 154 (459)
T ss_pred CCCCCEEECC---CCCCHHHHHHH
T ss_conf 3998536401---37620444421
No 259
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.12 E-value=0.36 Score=28.99 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHH
Q ss_conf 999999999839700002474111-226699999985
Q gi|254780506|r 50 VSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSL 85 (306)
Q Consensus 50 v~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~L 85 (306)
+....+.+++.|.++..+.. |+ +++++.+.+++.
T Consensus 50 ~~~~a~e~~~~g~~~~~~~~--Dv~~~~~v~~~v~~~ 84 (273)
T PRK08278 50 IHTAAAEIEAAGGQALPLVG--DVRDEDQVAAAVAKT 84 (273)
T ss_pred HHHHHHHHHHCCCEEEEEEC--CCCCHHHHHHHHHHH
T ss_conf 99999999974990899971--179999999999999
No 260
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.11 E-value=0.29 Score=29.60 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=71.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHHCC-CCCCC------EEEEECCCCCCHHHHH
Q ss_conf 99967986789999999999998397000024741112-2669999998523-12212------5888346887113788
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLSLNK-DDSIH------GILVQLPLPSTVSEQS 108 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~LN~-d~~V~------GIlvQlPLP~~id~~~ 108 (306)
+++++-+++.. +...+.|++.|.+...+.. |++ ++++.+.+++.-+ --.+| ||...-|+ ..++.+
T Consensus 33 Vvl~~R~~~~L---~~~a~e~~~~G~~~~~v~~--DVsd~~~v~~~~~~~~~~~G~IDiLVNNAGi~~~g~~-~e~~~e- 105 (324)
T PRK06139 33 LVLAARDEEAL---FEVAEECRALGAEVLVVPT--DVTHADQVQALATQAASFLGRIDVWFNNVGVGAVGRF-EETPLE- 105 (324)
T ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC-CCCCHH-
T ss_conf 99998999999---9999999954994899976--6788578999999999974998788645755777753-559999-
Q ss_pred HHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCC
Q ss_conf 986068743513215533888730477887567667999999998678772001289961644203468-9999862045
Q gi|254780506|r 109 IIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNAT 187 (306)
Q Consensus 109 i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~at 187 (306)
|.+-+-..|+-- ..=|| .+++..++.- + +|.=|-|.--+-..|.|. +.+-..|.|-
T Consensus 106 ---------~~~~vi~vNl~G---------~~~~~-~aalp~M~~~-g---~G~IINisS~ag~~~~P~~saY~ASK~Av 162 (324)
T PRK06139 106 ---------AHEQVIQTNLIG---------YLRDA-HAALPIFKAQ-G---HGIFINMISLGGFAAQPYAAAYSASKFGL 162 (324)
T ss_pred ---------HHHHHHHHHHHH---------HHHHH-HHHHHHHHHC-C---CCEEEEECCHHHHCCCCCCCHHHHHHHHH
T ss_conf ---------999999998699---------99999-9999999865-9---91899973632413699984198999999
Q ss_pred EEECCCCCCCHHHHHHH-CCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 33124676534776422-35736522443212201047662
Q gi|254780506|r 188 VTMAHSKTKNLPEICRT-ADILVVAVGRPRMVQVDWIKTGS 227 (306)
Q Consensus 188 Vti~hs~T~~l~~~~~~-ADivIsAvG~p~~i~~~~vk~ga 227 (306)
...|+.|...+.. ..|=|++| .|++++..|+.-..
T Consensus 163 ----~gftesLr~EL~~~~gI~Vt~V-~Pg~v~TP~~~~~~ 198 (324)
T PRK06139 163 ----RGFSEALRAELTDFPDIHVCDV-YPAFVDTPGFRHGA 198 (324)
T ss_pred ----HHHHHHHHHHHCCCCCCEEEEE-ECCCCCCCCCHHHH
T ss_conf ----9999999998379989189998-57995885201435
No 261
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=90.11 E-value=0.32 Score=29.32 Aligned_cols=90 Identities=29% Similarity=0.397 Sum_probs=58.5
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEECCCCC--------------CCHHHHHHHCCEEEEECCCC----CCCCCC-----CC
Q ss_conf 61644203468999986204533124676--------------53477642235736522443----212201-----04
Q gi|254780506|r 167 IGRSNLFGKPMGQLLLSRNATVTMAHSKT--------------KNLPEICRTADILVVAVGRP----RMVQVD-----WI 223 (306)
Q Consensus 167 vGrs~~VG~Pla~lL~~~~atVti~hs~T--------------~~l~~~~~~ADivIsAvG~p----~~i~~~-----~v 223 (306)
||=++ -|-|+|.-|.+.+.+|.+..=.- ....+.+..||+|||=-.-. ..+..| -+
T Consensus 2 IGLGN-MGgPMA~NL~KAGH~v~~FDL~p~av~~~v~aG~~~A~S~~~a~~~Ad~vITMLPAg~HV~sVY~gd~gIL~~~ 80 (290)
T TIGR01692 2 IGLGN-MGGPMAANLLKAGHAVRVFDLSPKAVEELVEAGAQAAASAAEAAEGADVVITMLPAGKHVISVYSGDDGILAKV 80 (290)
T ss_pred CCCCC-CCHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCHHCCCCHHHHHCCCCEEEECCCCCHHHHHHHHCCHHHHCCC
T ss_conf 78888-82279999861187257751788999999960022054579884558868634886034899983313341136
Q ss_pred CCCCEEEEEEEEECCCCCCCCCEEECCCC--HHHHHH------CCEECCCCCCCCH
Q ss_conf 76626998311111267668856841775--678731------4400898698686
Q gi|254780506|r 224 KTGSLVIDVGINRINSPQLGKTVLVGDVA--DECKSV------VGAITPVPGGVGP 271 (306)
Q Consensus 224 k~gavvIDvGi~~~~~~~~~~~~~~GDvd--~~~~~~------a~~iTPVPGGVGp 271 (306)
+.++.+||+-|= |+| -++.+. ...=-||=||||-
T Consensus 81 ~K~~LlIDcSTI--------------DpdsAr~~A~~Aa~~G~~f~DAPVSGG~Gg 122 (290)
T TIGR01692 81 AKGSLLIDCSTI--------------DPDSARKVAELAAAHGLVFVDAPVSGGVGG 122 (290)
T ss_pred CCCCCEEECCCC--------------CHHHHHHHHHHHHHCCCCEECCCCCCCHHH
T ss_conf 788963324567--------------867899999999981872103677753565
No 262
>PRK12937 short chain dehydrogenase; Provisional
Probab=90.08 E-value=0.46 Score=28.27 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 467653477642235736522443212201047
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+..|+.+......-.|-|-++ .|+++..++..
T Consensus 161 ~~ltk~lA~el~~~gIrVN~I-~PG~i~T~~~~ 192 (245)
T PRK12937 161 EGLVHVLANELRGRGITVNAV-APGPTATELFF 192 (245)
T ss_pred HHHHHHHHHHHHHHCEEEEEE-EECCCCCCCCC
T ss_conf 999999999960519299999-76458875543
No 263
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.00 E-value=0.42 Score=28.55 Aligned_cols=69 Identities=19% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 9999999986787720012899616442034689-9998620453312467653477642235736522443212201
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVD 221 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~ 221 (306)
.+++..+..- + ..|.=|.|-.-+-..|.|-. .+-..+.|-+ .-|+.+....-.-.|-|-+|. |+++..+
T Consensus 124 ~~~~~~m~~~-~--~~G~IVnisS~~~~~~~~~~~~Y~asKaal~----~ltkslA~e~a~~gIrVNaI~-PG~i~T~ 193 (268)
T PRK06198 124 QEAIKLMRRR-R--AEGTIVNIGSMSAHGGQPFIAAYCASKGALA----TLTRNVAYALLRNRIRVNGLN-IGWMASE 193 (268)
T ss_pred HHHHHHHHHC-C--CCCEEEEEECHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEEE-ECCCCCC
T ss_conf 9999999975-9--9927999915454568998568999999999----999999999705694999887-5778884
No 264
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=89.95 E-value=0.63 Score=27.30 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHCCCEEECCC--------------------------CCCCHHHHHHHCCEEEEE
Q ss_conf 00128996164--42034689999862045331246--------------------------765347764223573652
Q gi|254780506|r 160 SGQHAVVIGRS--NLFGKPMGQLLLSRNATVTMAHS--------------------------KTKNLPEICRTADILVVA 211 (306)
Q Consensus 160 ~Gk~vvVvGrs--~~VG~Pla~lL~~~~atVti~hs--------------------------~T~~l~~~~~~ADivIsA 211 (306)
.|+++++||.. .-|..-+..++..-|+.|++|+. .|.|+.+.+++||+|.+-
T Consensus 1 ~g~~i~~vGD~~~~rv~~S~~~~~~~~g~~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~al~~aDvvyt~ 80 (155)
T pfam00185 1 DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGLPPDPELVDEAKKNALKSGGISITVTDDLEEALKGADVVYTD 80 (155)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCEEEEE
T ss_conf 99899998378727499999999998499899987852388889999999998862897499984999984539999997
Q ss_pred C
Q ss_conf 2
Q gi|254780506|r 212 V 212 (306)
Q Consensus 212 v 212 (306)
.
T Consensus 81 ~ 81 (155)
T pfam00185 81 R 81 (155)
T ss_pred E
T ss_conf 6
No 265
>TIGR00518 alaDH alanine dehydrogenase; InterPro: IPR008141 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0000286 alanine dehydrogenase activity, 0006118 electron transport.
Probab=89.92 E-value=1.3 Score=25.04 Aligned_cols=124 Identities=21% Similarity=0.315 Sum_probs=79.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC---------------------CCCCHHHHHHHCCEEEEECCC---
Q ss_conf 20012899616442034689999862045331246---------------------765347764223573652244---
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS---------------------KTKNLPEICRTADILVVAVGR--- 214 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs---------------------~T~~l~~~~~~ADivIsAvG~--- 214 (306)
++--.++++|.+. +|.-.+.|....||+||+... ...++++.++++|++|.|+=.
T Consensus 166 ~~~g~~~~~ggg~-~g~~~~~~~~g~g~~~~~~d~n~d~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~dl~~~~~l~~g~ 244 (372)
T TIGR00518 166 VEPGDVTILGGGV-VGTNAAKMAVGLGADVTILDLNVDRLRQLDDLFGGRIDTRYSNAYELEDAVPEADLLIGAVLIPGA 244 (372)
T ss_pred CCCCCEEEEECCC-CCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHEEEEEEECCC
T ss_conf 6645267860761-121023443136751567623546655545653120111014534554433221010121120575
Q ss_pred --CCCCCCCC---CCCCCEEEEEEEEECCCCCCCCCE-EE-CCC-CHHHHHHCCE-ECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --32122010---476626998311111267668856-84-177-5678731440-089869868689999999999999
Q gi|254780506|r 215 --PRMVQVDW---IKTGSLVIDVGINRINSPQLGKTV-LV-GDV-ADECKSVVGA-ITPVPGGVGPMTIAMLMANTVIAA 285 (306)
Q Consensus 215 --p~~i~~~~---vk~gavvIDvGi~~~~~~~~~~~~-~~-GDv-d~~~~~~a~~-iTPVPGGVGp~Tva~L~~N~v~aa 285 (306)
|.++..++ .+||++++|+.+..-. -....+ .. -|- .++..+...+ +.-.|| --|-|...-+.|.-.-+
T Consensus 245 ~~p~l~~~~~~~~~~pg~~~~d~~~d~gg--~~e~~~~~~~~~~p~~~~~~~~~~~~~n~pg-~~p~~~~~~l~n~~~~y 321 (372)
T TIGR00518 245 KAPKLVSEELVEQMKPGAVLVDVAIDQGG--CVETLRHPTTHDQPTYAEHGVVHYGVANMPG-AVPWTSTYALTNATLPY 321 (372)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCCCCCCCCCCCHHHHCEEEEEECCCCC-CCCCCHHHHHHCCHHHH
T ss_conf 45302216788751787257865313675--1003334424666420110223554046765-55430112110011456
Q ss_pred H
Q ss_conf 9
Q gi|254780506|r 286 Y 286 (306)
Q Consensus 286 ~ 286 (306)
-
T Consensus 322 ~ 322 (372)
T TIGR00518 322 V 322 (372)
T ss_pred H
T ss_conf 7
No 266
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.90 E-value=0.41 Score=28.58 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHH-HHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 999999998678772001289961-6442034-68999986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIG-RSNLFGK-PMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~-Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.+++..+... + .|-.++.++ .+...|. +.+.+-..+.|-+ ..|+.+......-.|-|-++ .|+++..+|
T Consensus 136 ~~~~p~m~~~-~---~gG~IinisS~~~~~~~~~~~~Y~asKaav~----~lTk~lA~e~a~~gIrVNaI-~PG~i~t~~ 206 (261)
T PRK07831 136 RAALRYMRAA-P---HGGVIVNNASVLGWRAQHSQAHYAAAKAGVM----ALTRCSAIEAAEYGVRINAV-APSIARHKF 206 (261)
T ss_pred HHHHHHHHHC-C---CCCEEEECCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCCEEEEE-ECCCCCCCH
T ss_conf 9999999976-9---9978984544030567887436899999999----99999999984529089999-558767702
Q ss_pred CC
Q ss_conf 47
Q gi|254780506|r 223 IK 224 (306)
Q Consensus 223 vk 224 (306)
+.
T Consensus 207 ~~ 208 (261)
T PRK07831 207 LK 208 (261)
T ss_pred HH
T ss_conf 22
No 267
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.87 E-value=0.9 Score=26.22 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=65.0
Q ss_pred HHHHHHHHCCCCCCCC--EEEEECCCCCCHHHHHHHHHHHCCCEEECCC-CCCCH-----------------HHHHHHCC
Q ss_conf 9999998678772001--2899616442034689999862045331246-76534-----------------77642235
Q gi|254780506|r 147 AILLIEQFKGCDLSGQ--HAVVIGRSNLFGKPMGQLLLSRNATVTMAHS-KTKNL-----------------PEICRTAD 206 (306)
Q Consensus 147 v~~ll~~y~~i~l~Gk--~vvVvGrs~~VG~Pla~lL~~~~atVti~hs-~T~~l-----------------~~~~~~AD 206 (306)
+.+-++ |.-|.|..+ +|+|||-|. |+.==+..|+..||.||+.-. -++.+ ++.+..++
T Consensus 9 ~~~~~~-~~~i~l~s~klkvLVVGGG~-VA~RKi~~Ll~agA~VtVVSP~~~~el~~L~~~~~I~~i~r~y~~~dL~~~~ 86 (222)
T PRK05562 9 IYEQIE-YSFISLLSNKIKVLVIGGGK-AAFIKGKTFLKKGCYVEILSKEFSKEFLDLKKYGNLKLIKGNYDKEFIKDKH 86 (222)
T ss_pred HHHHHH-EEEEEEECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHCCCCC
T ss_conf 764332-13324312676699999879-9999999998789989998786688999999759869996867977808873
Q ss_pred EEEEECCCCCC---CCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCC-HHHHHH---CCEECCCCCCCCHHHHHHHHH
Q ss_conf 73652244321---22010476626998311111267668856841775-678731---440089869868689999999
Q gi|254780506|r 207 ILVVAVGRPRM---VQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVA-DECKSV---VGAITPVPGGVGPMTIAMLMA 279 (306)
Q Consensus 207 ivIsAvG~p~~---i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd-~~~~~~---a~~iTPVPGGVGp~Tva~L~~ 279 (306)
+||.|+.-+.+ +..+--..|-.|.+| ++++.+ ++- |....+ .-+++ -||--|+..-+|-+
T Consensus 87 LVIaATdd~~lN~~I~~~a~~~~ilvNvv-----ddp~~~------~fi~Paiv~Rg~L~IAIS--T~G~SP~lAr~iR~ 153 (222)
T PRK05562 87 LIIIATDDEELNNKIRKHCDRLYKLYIDC-----SDFKKG------LCVIPYQRSSKNMVFALN--TKGGSPKTSVFIGE 153 (222)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEC-----CCCCCC------CEEECEEEEECCEEEEEE--CCCCCHHHHHHHHH
T ss_conf 99994798899999999999809988985-----788768------179770997289799998--99989799999999
Q ss_pred H
Q ss_conf 9
Q gi|254780506|r 280 N 280 (306)
Q Consensus 280 N 280 (306)
.
T Consensus 154 k 154 (222)
T PRK05562 154 K 154 (222)
T ss_pred H
T ss_conf 9
No 268
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.86 E-value=0.47 Score=28.20 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 4676534776422357365224432122010476
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+..|+.+......-.|-|-|+ .|+++..+|+.+
T Consensus 175 ~~ltr~lA~ela~~gIrVN~V-~PG~i~T~~~~~ 207 (257)
T PRK12748 175 EAFTKSLAPVLAEKGITVNAV-NPGPTDTGWITE 207 (257)
T ss_pred HHHHHHHHHHHHHHCEEEEEE-EECCCCCCCCCH
T ss_conf 999999999972309499999-778789888898
No 269
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.79 E-value=0.73 Score=26.87 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=13.4
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 996798678999999999999839700
Q gi|254780506|r 38 VLVGNDPASCSYVSAKTRMAKHCGFHS 64 (306)
Q Consensus 38 IlvGddpaS~~Yv~~K~K~a~~lGI~~ 64 (306)
|.||-++.|.++.+ |++-|++.
T Consensus 43 V~vglr~gs~S~~k-----A~~dGf~v 64 (336)
T PRK05479 43 VVVGLREGSKSWKK-----AEADGFEV 64 (336)
T ss_pred EEEEECCCCCCHHH-----HHHCCCEE
T ss_conf 79997999803999-----99879943
No 270
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.70 E-value=0.46 Score=28.27 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=48.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC-------CH----H----------------------------
Q ss_conf 20012899616442034689999862045331246765-------34----7----------------------------
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK-------NL----P---------------------------- 199 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~-------~l----~---------------------------- 199 (306)
-+.|+++|||-|- +|--+|..|.+.|..||+.+.... ++ .
T Consensus 146 ~~~k~vvIIGgG~-IGlE~A~~l~~~G~~Vtlie~~~~~~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~v~~~~ 224 (438)
T PRK13512 146 NQVDKVLVVGAGY-VSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEITFKS 224 (438)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCEEEEEE
T ss_conf 7997799989558-999999999972990899993573120049999999999998689999958779999797999932
Q ss_pred HHHHHCCEEEEECCC-CCC--CCCCCC---CCCCEEEE
Q ss_conf 764223573652244-321--220104---76626998
Q gi|254780506|r 200 EICRTADILVVAVGR-PRM--VQVDWI---KTGSLVID 231 (306)
Q Consensus 200 ~~~~~ADivIsAvG~-p~~--i~~~~v---k~gavvID 231 (306)
.....+|.||.|+|+ |+. +...-+ ..|.+++|
T Consensus 225 g~~~~~D~vi~a~G~~Pn~~~~~~~gi~~~~~G~I~Vd 262 (438)
T PRK13512 225 GKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVN 262 (438)
T ss_pred CCEEEECEEEEEEECCCCHHHHHHCCCCCCCCCCEEEC
T ss_conf 88974078999671002736788538765788729878
No 271
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=89.69 E-value=0.74 Score=26.81 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=56.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC--------------CCHHHHHHHCCEEEEECC---CCCCCC--
Q ss_conf 2001289961644203468999986204533124676--------------534776422357365224---432122--
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT--------------KNLPEICRTADILVVAVG---RPRMVQ-- 219 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T--------------~~l~~~~~~ADivIsAvG---~p~~i~-- 219 (306)
+++|+|.|||.+. =|+--|+-|...|..|++.-+.. .+..+-++.||||.-.+. ++.+..
T Consensus 2 lk~k~iaViGYGs-QG~AhAlNLrDSG~~V~vglr~~s~S~~kA~~dGf~v~~~~eA~~~aDiim~L~PD~~q~~iy~~~ 80 (165)
T pfam07991 2 LKGKKIAVIGYGS-QGHAHALNLRDSGVNVIVGLRPGSKSWEKAKKDGFEVYTVAEAVKKADVVMILLPDEVQAEVYEKE 80 (165)
T ss_pred CCCCEEEEEEECC-HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHH
T ss_conf 6799899993461-648887230534997899978998679999978970048999986578999837977789999998
Q ss_pred -CCCCCCCCEEE-EEEEEE
Q ss_conf -01047662699-831111
Q gi|254780506|r 220 -VDWIKTGSLVI-DVGINR 236 (306)
Q Consensus 220 -~~~vk~gavvI-DvGi~~ 236 (306)
..++|+|+.+. -=|+|.
T Consensus 81 I~p~lk~G~~L~FaHGFnI 99 (165)
T pfam07991 81 IAPNLKEGAALAFAHGFNI 99 (165)
T ss_pred HHHHCCCCCEEEECCCCEE
T ss_conf 9865789977997157577
No 272
>KOG0068 consensus
Probab=89.67 E-value=1.3 Score=25.22 Aligned_cols=177 Identities=18% Similarity=0.240 Sum_probs=102.0
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH-HCCC
Q ss_conf 999679867899999999999983970000247411122669999998523122125888346887113788986-0687
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQ-SIVP 115 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~-~I~p 115 (306)
.|++.++ |-+.-.+-.++-|++.+.++ +.+.+|+...+. ++|+++|..- ..++.+ +++ +=.-
T Consensus 8 ~il~~e~-----~~~~~~~~l~~~g~~v~~~~---~~~~eel~~~i~------~~~aviVrs~--tkvtad-vl~aa~~~ 70 (406)
T KOG0068 8 KILVAES-----LDQACIEILKDNGYQVEFKK---NLSLEELIEKIK------DCDALIVRSK--TKVTAD-VLEAAAGG 70 (406)
T ss_pred EEEEECC-----CCHHHHHHHHHCCCEEEEEC---CCCHHHHHHHHC------CCCEEEEEEC--CEECHH-HHHHHCCC
T ss_conf 2998433-----36688999985171578862---589899999860------4988999857--701299-99860387
Q ss_pred CC------------CHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------------------HHHCCCCCCCCE
Q ss_conf 43------------5132155338887304778875676679999999--------------------986787720012
Q gi|254780506|r 116 EK------------DVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLI--------------------EQFKGCDLSGQH 163 (306)
Q Consensus 116 ~K------------DVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll--------------------~~y~~i~l~Gk~ 163 (306)
.| |++.-+.++. +..+-....-..+.-..|-.++ ..|-|.++.||+
T Consensus 71 lkvVgrag~G~dNVDL~AAte~gi--~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKT 148 (406)
T KOG0068 71 LKVVGRAGIGVDNVDLKAATENGI--LVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKT 148 (406)
T ss_pred EEEEEECCCCCCCCCHHHHHHCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCEEECCEEEEEEECCE
T ss_conf 489985135756547255775783--899589887177999999999997512031001543584110120146775667
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC------------CHHHHHHHCCEEEEECCC----CCCCCCC---CCC
Q ss_conf 899616442034689999862045331246765------------347764223573652244----3212201---047
Q gi|254780506|r 164 AVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK------------NLPEICRTADILVVAVGR----PRMVQVD---WIK 224 (306)
Q Consensus 164 vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~------------~l~~~~~~ADivIsAvG~----p~~i~~~---~vk 224 (306)
..|+|-++ +|.-+|..+...|..|...+..++ .+++....||.+-.-+.- -+++..+ ..|
T Consensus 149 LgvlG~Gr-IGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mK 227 (406)
T KOG0068 149 LGVLGLGR-IGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMK 227 (406)
T ss_pred EEEEECCC-CHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCEEEEHHHHHHHCCEEEECCCCCCCHHHCCCHHHHHHHH
T ss_conf 88850462-11899999986585488606878467787516545409887755688998167882143113878999860
Q ss_pred CCCEEEEEE
Q ss_conf 662699831
Q gi|254780506|r 225 TGSLVIDVG 233 (306)
Q Consensus 225 ~gavvIDvG 233 (306)
.|+.+|++.
T Consensus 228 kGVriIN~a 236 (406)
T KOG0068 228 KGVRIINVA 236 (406)
T ss_pred CCCEEEEEC
T ss_conf 785899824
No 273
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.62 E-value=0.37 Score=28.90 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=63.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH-H---HHHHHHHHHCCCCCC----CEEEEECCCCCCHHHHH
Q ss_conf 999679867899999999999983970000247411122-6---699999985231221----25888346887113788
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQ-I---DLENAVLSLNKDDSI----HGILVQLPLPSTVSEQS 108 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se-~---el~~~I~~LN~d~~V----~GIlvQlPLP~~id~~~ 108 (306)
+++++-+++. .+...+.|++.|-+...+. -|++. + ++.+.+.+-...-++ -|+.+.-|+ ..++.+.
T Consensus 35 Vvl~aR~~~~---L~~~a~e~~~~G~~~~~~~--~DVsd~~~v~~~~~~~~~~~G~IDvlVNNAGi~~~g~~-~~~~~e~ 108 (338)
T PRK07109 35 VVLLARGEEG---LEGLAAEIRAAGGEALAVV--ADVADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPF-EDVTPEE 108 (338)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCEEEEEE--EECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH-HHCCHHH
T ss_conf 9999899999---9999999996398189998--01799999999999999984998888654666778763-2299999
Q ss_pred HHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCC
Q ss_conf 9860687435132155338887304778875676679999999986787720012899616442034689-999862045
Q gi|254780506|r 109 IIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNAT 187 (306)
Q Consensus 109 i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~at 187 (306)
..+.+ ..|+-- .+=+| .+++..++.. + .|.=|.|---.-..|.|.. .+-..|.|
T Consensus 109 ~~~vi----------~vNl~G---------~v~~t-~aaLp~m~~~-~---~G~IInvsSvag~~~~P~~saY~ASK~A- 163 (338)
T PRK07109 109 FRRVT----------DVTYLG---------VVHGT-LAALRHMRPR-D---RGAIIQVGSALAYRSIPLQSAYCAAKHA- 163 (338)
T ss_pred HHHHH----------HHHHHH---------HHHHH-HHHHHHHHHC-C---CCEEEEECCHHHCCCCCCCCHHHHHHHH-
T ss_conf 99998----------775189---------99999-9999999867-9---9789998895554578998179999999-
Q ss_pred EEECCCCCCCHHHHHH--HCCEEEEECCCCCCCCCCCC
Q ss_conf 3312467653477642--23573652244321220104
Q gi|254780506|r 188 VTMAHSKTKNLPEICR--TADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 188 Vti~hs~T~~l~~~~~--~ADivIsAvG~p~~i~~~~v 223 (306)
.+..|+.|...+. .++|=|+.| .|++|+.-++
T Consensus 164 ---v~GftesLr~EL~~~~s~I~Vt~V-~Pg~VdTP~f 197 (338)
T PRK07109 164 ---IRGFTDSLRCELLHDGSPVSVTMV-QPPAVNTPQF 197 (338)
T ss_pred ---HHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCHH
T ss_conf ---999999999999867998189997-5798779742
No 274
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=89.58 E-value=0.55 Score=27.69 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=37.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--EEECC---------------C---------CCCCHHHHHHHCCEEEEECCCCC
Q ss_conf 2899616442034689999862045--33124---------------6---------76534776422357365224432
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNAT--VTMAH---------------S---------KTKNLPEICRTADILVVAVGRPR 216 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~at--Vti~h---------------s---------~T~~l~~~~~~ADivIsAvG~p~ 216 (306)
+|+|||.+.-||..+|.+|..++-. +.+.. . .+.+..+.++.|||||.+.|.|.
T Consensus 2 KV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG~~~ 81 (142)
T pfam00056 2 KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAGVPR 81 (142)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECCCCC
T ss_conf 89998987789999999997479663478850577641179999861443478876974883888378999998157778
No 275
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.56 E-value=0.79 Score=26.63 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=12.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 00128996164420346899998620
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRN 185 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~ 185 (306)
.|.++.+.|. +|.|+...+.+.+
T Consensus 127 ~g~~~~~~GN---IG~p~l~~~~~~~ 149 (418)
T PRK00683 127 LGIPAFAMGN---IGLPILDGMQQPG 149 (418)
T ss_pred CCCCCEEEEC---CCHHHHHHHCCCC
T ss_conf 7998188803---4657776432589
No 276
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=89.50 E-value=1.8 Score=24.15 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEE-CCC--------------------CCCCH
Q ss_conf 676679999999986787720012899616442034689999862045331-246--------------------76534
Q gi|254780506|r 140 VPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTM-AHS--------------------KTKNL 198 (306)
Q Consensus 140 ~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti-~hs--------------------~T~~l 198 (306)
+||...-++..|....++ -.|++|+|-|-+.-||.-..++....||+|+. |.| ++.|+
T Consensus 85 l~~~~~TA~~al~~~~~i-~~g~~VlI~gg~G~vG~~aiqlak~~Ga~Vi~t~~s~~k~~~~~~lG~~~~~v~~~~~~~~ 163 (288)
T smart00829 85 VPVVFLTAYYALVDLARL-RPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSF 163 (288)
T ss_pred HHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCH
T ss_conf 488899999999975088-9999999978986777999999997398300340888999999976999607621799509
Q ss_pred HHHHH------HCCEEEEECCCCCCCC-CCCCCCCCEEEEEEEE
Q ss_conf 77642------2357365224432122-0104766269983111
Q gi|254780506|r 199 PEICR------TADILVVAVGRPRMVQ-VDWIKTGSLVIDVGIN 235 (306)
Q Consensus 199 ~~~~~------~ADivIsAvG~p~~i~-~~~vk~gavvIDvGi~ 235 (306)
.+.++ ..|+++-++|-..+-. -+.++++..++.+|..
T Consensus 164 ~~~v~~~t~g~gvDvv~d~vgg~~~~~~~~~l~~~G~~v~ig~~ 207 (288)
T smart00829 164 ADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKR 207 (288)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999870898827999898689999999975369889997566
No 277
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=89.45 E-value=0.76 Score=26.72 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=54.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEE-EECCCCC-CHHHHHHHHHHHCCC---EEECCCCCCCHHHHH-HHCCEEEEEC--CCCC
Q ss_conf 999999998678772001289-9616442-034689999862045---331246765347764-2235736522--4432
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAV-VIGRSNL-FGKPMGQLLLSRNAT---VTMAHSKTKNLPEIC-RTADILVVAV--GRPR 216 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vv-VvGrs~~-VG~Pla~lL~~~~at---Vti~hs~T~~l~~~~-~~ADivIsAv--G~p~ 216 (306)
.-.++||...- .-.++ ++..|.- -|+|++.+.=+--.. ...+-..-.++++.. .++|+|+.|+ |...
T Consensus 14 ~EL~RLL~~HP-----~~e~~~~~ss~~~~aG~~~~~~~P~L~g~~~~~~~~~~~~~~~~~~~L~~~DvVFlAlPhgvs~ 88 (361)
T TIGR01850 14 GELLRLLANHP-----EVEITYLVSSRESLAGKPLSEVHPHLRGLVDYLNLEPLDDAKLEEIELEDADVVFLALPHGVSM 88 (361)
T ss_pred HHHHHHHHCCC-----CEEEEEEEEEEEHHCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHH
T ss_conf 99999984199-----5378888876201138525773661110100233366676678886213767899868725569
Q ss_pred CCCCCCCCCCCEEEEEE
Q ss_conf 12201047662699831
Q gi|254780506|r 217 MVQVDWIKTGSLVIDVG 233 (306)
Q Consensus 217 ~i~~~~vk~gavvIDvG 233 (306)
-+-++.+..|..|||-+
T Consensus 89 ~~~p~~l~~g~~ViDLS 105 (361)
T TIGR01850 89 ELAPELLEAGVKVIDLS 105 (361)
T ss_pred HHHHHHHHCCCEEEECC
T ss_conf 99999984798699888
No 278
>PRK06398 aldose dehydrogenase; Validated
Probab=89.37 E-value=0.41 Score=28.63 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999867877200128996164420346-89999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..+..- + .|.=|-|-.-+...|.| .+.+-..|.|-+. -|+.+......- |-|-|+ .|+++..+|+
T Consensus 113 ~~~~p~m~~~-~---~G~IVnisS~~~~~~~~~~~~Y~asKaal~~----ltrslA~ela~~-IrVNaV-~PG~i~T~~~ 182 (256)
T PRK06398 113 KEVIPHMLRS-G---TGSIVNISSVQADIATKNAAAYVTSKHALIG----LTKSIAVDYAPL-IRCNAV-CPGTIDTPLV 182 (256)
T ss_pred HHHHHHHHHC-C---CCEEEEEECCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCC-CEEEEE-EECCCCCHHH
T ss_conf 9999999983-9---9579998040207779996899999999999----999999997799-889999-7378886166
Q ss_pred CC
Q ss_conf 76
Q gi|254780506|r 224 KT 225 (306)
Q Consensus 224 k~ 225 (306)
+.
T Consensus 183 ~~ 184 (256)
T PRK06398 183 DK 184 (256)
T ss_pred HH
T ss_conf 76
No 279
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.34 E-value=0.5 Score=28.02 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=34.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECC--CCCCHHH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 9999999986787720012899616--4420346-899998620453312467653477642235736522443212201
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGR--SNLFGKP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVD 221 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGr--s~~VG~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~ 221 (306)
.+++..+..- + .|+ ++.+.- +...|.| .+.+-..|.|-+ ..|+.+........|-|-++ .|+++..+
T Consensus 122 ~~~~p~m~~~-~---~G~-IInisS~~g~~~~~~~~~~Y~asKaav~----~lTr~lA~Ela~~gIrVNaV-aPG~i~T~ 191 (263)
T PRK08226 122 KAVLPEMIAR-K---DGR-IVMMSSVTGDMVADPGETAYALTKAAIV----GLTKSLAVEYAQSGIRVNAI-CPGYVRTP 191 (263)
T ss_pred HHHHHHHHHC-C---CCC-EEEEEEHHHCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCH
T ss_conf 9999999983-8---998-9999765330448997388999999999----99999999962429599999-75889876
Q ss_pred CC
Q ss_conf 04
Q gi|254780506|r 222 WI 223 (306)
Q Consensus 222 ~v 223 (306)
|.
T Consensus 192 ~~ 193 (263)
T PRK08226 192 MA 193 (263)
T ss_pred HH
T ss_conf 89
No 280
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.24 E-value=1.1 Score=25.54 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=14.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0012899616442034689999862
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSR 184 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~ 184 (306)
.|.++.+.|. +|.|+..++...
T Consensus 134 ~g~~~~~gGN---iG~p~~~~~~~~ 155 (448)
T PRK03803 134 AGKRVAVGGN---LGTPALDLLSDD 155 (448)
T ss_pred CCCCEEEEEE---CCCHHHHHHCCC
T ss_conf 5983799403---276136652588
No 281
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.22 E-value=0.57 Score=27.62 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHC---CCCCCCCEEEEEC-----CCCCCHHHHHHHHHHH---CCCEEEC---------CCCC-------
Q ss_conf 6799999999867---8772001289961-----6442034689999862---0453312---------4676-------
Q gi|254780506|r 143 TPAGAILLIEQFK---GCDLSGQHAVVIG-----RSNLFGKPMGQLLLSR---NATVTMA---------HSKT------- 195 (306)
Q Consensus 143 Tp~av~~ll~~y~---~i~l~Gk~vvVvG-----rs~~VG~Pla~lL~~~---~atVti~---------hs~T------- 195 (306)
++..+.+++++-. -.++.+..+.+++ .|.++|+||..+=... +..|... +..|
T Consensus 129 ~a~~I~~~i~~p~a~~v~~f~~G~~~l~~~~v~~~splvGk~L~el~~~~~~~~~~VvaI~R~g~~iIP~g~t~l~~gD~ 208 (455)
T PRK09496 129 VAREIARLIEYPGALQVEEFADGRVQLVGVKVYEGSPLVGKALSDLREHFPDIDTRVVAIFRNGRLIIPRGDTVIEAGDE 208 (455)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCEEECCCCCCEEECCCE
T ss_conf 99999998438870788882488459999997899924784989953217888679999998998970699838733889
Q ss_pred -------CCHHHH--------HHHCCEEEEECCCCCCCCCCCCCCC
Q ss_conf -------534776--------4223573652244321220104766
Q gi|254780506|r 196 -------KNLPEI--------CRTADILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 196 -------~~l~~~--------~~~ADivIsAvG~p~~i~~~~vk~g 226 (306)
.++.++ .+...|+|.+.|+-++--..++..|
T Consensus 209 l~vig~~~~i~~~~~~~g~~~~~~~~v~I~Ggg~ig~~la~~L~~~ 254 (455)
T PRK09496 209 VFFVAASEHIRRVMSELGRLEKPVKRIMIAGGGNIGLYLAKLLEKG 254 (455)
T ss_pred EEEEECHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCC
T ss_conf 9999257769999998586546665189987869999999987408
No 282
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.22 E-value=0.82 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=14.1
Q ss_pred CCHHHHH----HHHHHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 6679999----9999867877200128996164420346
Q gi|254780506|r 142 CTPAGAI----LLIEQFKGCDLSGQHAVVIGRSNLFGKP 176 (306)
Q Consensus 142 cTp~av~----~ll~~y~~i~l~Gk~vvVvGrs~~VG~P 176 (306)
||+.+.+ -|++.+ ++ +++.|-..+-+-|.-
T Consensus 130 C~~t~~~laL~PL~k~~-~I----~~i~vstyqavSGAG 163 (348)
T PRK06598 130 CTTSLMLMALGPLHDAA-LI----ERVVVSTYQAVSGAG 163 (348)
T ss_pred CHHHHHHHHHHHHHHHC-CC----EEEEEEEEECCCCCC
T ss_conf 19999999999899855-95----132587885200156
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.19 E-value=1.7 Score=24.29 Aligned_cols=77 Identities=17% Similarity=0.322 Sum_probs=53.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECC-------------------CCCCCHHHHHHH---CCEEEEECCC
Q ss_conf 720012899616442034689999862045-33124-------------------676534776422---3573652244
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAH-------------------SKTKNLPEICRT---ADILVVAVGR 214 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~h-------------------s~T~~l~~~~~~---ADivIsAvG~ 214 (306)
...|.+++|+|.+. +|-=.++++...||. |.... ++..++.+..+. .|++|-|+|.
T Consensus 167 ~~~g~~VlV~G~G~-iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~~~~~~~~~~~g~~Dvvie~~G~ 245 (343)
T PRK09880 167 DLQGKRVFISGVGP-IGCLIVSAVKTLGAAEIVCADLSPRSLSLARQMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCEEEEECCC
T ss_conf 75698899984776-79999999998699879999797899999997299799879874399999636997789992199
Q ss_pred CCCCCC--CCCCCCCEEEEEEEE
Q ss_conf 321220--104766269983111
Q gi|254780506|r 215 PRMVQV--DWIKTGSLVIDVGIN 235 (306)
Q Consensus 215 p~~i~~--~~vk~gavvIDvGi~ 235 (306)
+..+.. +++++|..++=+|+.
T Consensus 246 ~~~~~~al~~~r~gG~iv~vG~~ 268 (343)
T PRK09880 246 PSSVNTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred HHHHHHHHHHCCCCEEEEEEECC
T ss_conf 99999999737798399999727
No 284
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=89.18 E-value=0.45 Score=28.35 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=23.2
Q ss_pred HHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 998620453312467653477642235736522443212201047
Q gi|254780506|r 180 LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 180 lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+-..+.|.. .-|+.+......-.|-|-++ .|+++..+|.+
T Consensus 158 Y~asKaal~----~ltr~lA~e~a~~gIrVN~I-~PG~v~T~~~~ 197 (253)
T PRK08993 158 YTASKSGVM----GVTRLMANEWAKHNINVNAI-APGYMATNNTQ 197 (253)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCCHH
T ss_conf 799999999----99999999962339599999-64878677554
No 285
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.04 E-value=0.77 Score=26.70 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=7.8
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 2467653477642
Q gi|254780506|r 191 AHSKTKNLPEICR 203 (306)
Q Consensus 191 ~hs~T~~l~~~~~ 203 (306)
-|++++.+.+.++
T Consensus 208 ~HrH~pEi~q~l~ 220 (345)
T PRK00436 208 GHRHTPEIEQELS 220 (345)
T ss_pred CCCCCHHHHHHHH
T ss_conf 8787189999987
No 286
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.04 E-value=0.5 Score=28.01 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=21.1
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHHCCC-CCCCEE
Q ss_conf 99967986789999999999998397000024741112-26699999985231-221258
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLSLNKD-DSIHGI 94 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~LN~d-~~V~GI 94 (306)
+++.+-++.+..++ +..+++.|-... ++-|++ ++++.+.+++.-+. -.+|.+
T Consensus 35 V~i~~~~~~~~~~~---~~~~~~~~~~~~---~~~Dvt~~~~v~~~~~~~~~~~G~iDil 88 (254)
T PRK07533 35 LAVTYLNDKARPYV---EPLAEELDAPLL---MPLDVREPGQLEAVFARIAEEWGRLDFV 88 (254)
T ss_pred EEEEECCHHHHHHH---HHHHHHCCCEEE---EEECCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99982887789999---999974598189---9916999999999999999984997789
No 287
>PRK07102 short chain dehydrogenase; Provisional
Probab=88.91 E-value=0.42 Score=28.54 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=34.0
Q ss_pred EEEEEC-CCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 289961-6442034689-9998620453312467653477642235736522443212201047
Q gi|254780506|r 163 HAVVIG-RSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 163 ~vvVvG-rs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+++.++ -+-..|.|-. .+-..+.| .+..|+.|......-.|=|+++ .|++++.+|.+
T Consensus 129 ~Iv~isS~ag~~g~p~~~~Y~aSKaa----l~~~~~sL~~El~~~gI~V~~v-~PG~v~T~m~~ 187 (243)
T PRK07102 129 TIVGISSVAGDRGRASNYVYGSAKAA----LTAFLSGLRNRLFKSGVHVLTV-KPGFVDTPMTA 187 (243)
T ss_pred EEEEEECHHHCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEEEE-EECCCCCCCCC
T ss_conf 49998256647789998269999999----9999999999850209199999-71889675666
No 288
>PRK07775 short chain dehydrogenase; Provisional
Probab=88.91 E-value=0.44 Score=28.39 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 6765347764223573652244321220104
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
..|+.|........|=|.++ .|+++..+|-
T Consensus 168 ~lt~~La~El~~~gIrVn~V-~PG~v~T~m~ 197 (275)
T PRK07775 168 AMVTNLQMELEGTGVRASIV-HPGPTKTSMG 197 (275)
T ss_pred HHHHHHHHHHCCCCEEEEEE-ECCCCCCCCC
T ss_conf 99999999856569089999-7268818898
No 289
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=88.91 E-value=2.2 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=10.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99996798678999999999999839
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCG 61 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lG 61 (306)
++++..++|+=..=.+.-+...++.|
T Consensus 3 gi~q~~~h~~ld~~~~Gf~~~L~~~G 28 (281)
T cd06325 3 GILQLVEHPALDAARKGFKDGLKEAG 28 (281)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 89983376747999999999999649
No 290
>PRK07577 short chain dehydrogenase; Provisional
Probab=88.88 E-value=0.49 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 4676534776422357365224432122010476
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+..|+.+......-.|-|-|+ .|+++..+|.++
T Consensus 147 ~~ltkslA~ela~~gIrVNaV-~PG~i~T~~~~~ 179 (234)
T PRK07577 147 VGCTRTWALELAEYGITVNAV-APGPIETELFRQ 179 (234)
T ss_pred HHHHHHHHHHHHHHCEEEEEE-EECCCCCHHHHH
T ss_conf 999999999986559699999-548897735542
No 291
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.87 E-value=0.8 Score=26.57 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=12.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 97599999679867899999999999
Q gi|254780506|r 32 QVGLAVVLVGNDPASCSYVSAKTRMA 57 (306)
Q Consensus 32 ~P~LavIlvGddpaS~~Yv~~K~K~a 57 (306)
++|+++|-.|.-.++..|.=.....|
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l~ 28 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA 28 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 88699989788899999999966998
No 292
>PRK05855 short chain dehydrogenase; Validated
Probab=88.65 E-value=0.52 Score=27.87 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=38.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHH
Q ss_conf 72001289961644203468999986204533124676534776
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEI 201 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~ 201 (306)
.++||.++|-|-|.=.|+-+|..|.++||.|.++......+++.
T Consensus 312 rFsGKvAvVTGA~sGIGrA~A~~fA~~GA~Vvl~Dr~~~~l~et 355 (582)
T PRK05855 312 RFGGKLVVVTGAGSGIGRATALAFAREGAEVVASDIDEAAAERT 355 (582)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
T ss_conf 74995899958757899999999997799999960799999999
No 293
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=88.55 E-value=2.3 Score=23.38 Aligned_cols=163 Identities=14% Similarity=0.151 Sum_probs=84.1
Q ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCHHHHHHHHHCCCCC------------CH
Q ss_conf 999998397000024741112266999999852312212588834--6887113788986068743------------51
Q gi|254780506|r 54 TRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQL--PLPSTVSEQSIIQSIVPEK------------DV 119 (306)
Q Consensus 54 ~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQl--PLP~~id~~~i~~~I~p~K------------DV 119 (306)
.+..++.|.++... ++.+++|+.+.++ +.|++++.. |+.+ + ++++.+-.| |+
T Consensus 12 ~~~L~~~g~ev~~~---~~~~~eel~~~~~------~~d~li~~~~~~i~~----e-~l~~~~~LK~I~~~~~G~D~ID~ 77 (313)
T pfam00389 12 LELLKEAGHEVEVH---DELLTEELLEAAK------DADALIVRSTTPVTA----E-VLEAAPGLKVIARRGVGVDNIDL 77 (313)
T ss_pred HHHHHHCCCEEEEC---CCCCHHHHHHHHC------CCCEEEECCCCCCCH----H-HHHCCCCCEEEEECCCCCCHHHH
T ss_conf 99999789889989---9999899999838------982999858997689----9-99449998499988844553059
Q ss_pred HHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH----H-----------------HCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 321553388873047788756766799999999----8-----------------6787720012899616442034689
Q gi|254780506|r 120 DGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIE----Q-----------------FKGCDLSGQHAVVIGRSNLFGKPMG 178 (306)
Q Consensus 120 DGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~----~-----------------y~~i~l~Gk~vvVvGrs~~VG~Pla 178 (306)
|..+..++ ..-+.......+++.-++.++- + +.+.++.||++.|+|-+. +|+-++
T Consensus 78 ~~a~~~gI---~V~n~p~~~~~aVAE~~i~l~L~l~R~~~~~~~~~r~g~w~~~~~~~~~l~~~~~giiG~G~-iG~~va 153 (313)
T pfam00389 78 DAATERGI---LVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKKGGPIGLELRGKTLGVIGGGG-IGGIGA 153 (313)
T ss_pred HHHHHCCC---EEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC-HHHHHH
T ss_conf 99997999---99989987728999999999999712307889999808766556555336898899994654-369999
Q ss_pred HHHHHHCCCEEECCCCCCC---------------HHHHHHHC-CEEEEECCCC----CCCCCC---CCCCCCEEEEEEE
Q ss_conf 9998620453312467653---------------47764223-5736522443----212201---0476626998311
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKN---------------LPEICRTA-DILVVAVGRP----RMVQVD---WIKTGSLVIDVGI 234 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~---------------l~~~~~~A-DivIsAvG~p----~~i~~~---~vk~gavvIDvGi 234 (306)
.++..-++.|..+..+... +.+...++ ||++.....+ +++..+ |.+++.+++...-
T Consensus 154 ~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~ 232 (313)
T pfam00389 154 AIAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARG 232 (313)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEEECCC
T ss_conf 9999769869999579986777640553112666687741268899947999865577116889845699628983378
No 294
>PRK08507 prephenate dehydrogenase; Validated
Probab=88.55 E-value=0.8 Score=26.59 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=29.3
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEECCCCCCHH---HHHHHHHHHCCCEEECC
Q ss_conf 88756766799999999867877------20012899616442034---68999986204533124
Q gi|254780506|r 136 TTGLVPCTPAGAILLIEQFKGCD------LSGQHAVVIGRSNLFGK---PMGQLLLSRNATVTMAH 192 (306)
Q Consensus 136 ~~~~~PcTp~av~~ll~~y~~i~------l~Gk~vvVvGrs~~VG~---Pla~lL~~~~atVti~h 192 (306)
...|+|+-|.|=-+ + .|.+ +.|+.+++......-.. -+..++..-||.+..+.
T Consensus 106 ~~~fVg~HPmAGsE---~-sG~~~a~~~LF~~~~~il~p~~~~~~~~~~~~~~l~~~lGa~~~~~~ 167 (275)
T PRK08507 106 RKNFIAAHPMTGTE---F-SGPKAAFKGLYKGAVVVLCDLEKSGEKHQERAKEIFSGIGMKIVFMD 167 (275)
T ss_pred CCCCCCCCCCCCCC---C-CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 68844349978887---5-44544107785398599968888979999999999998199788748
No 295
>PRK08589 short chain dehydrogenase; Validated
Probab=88.29 E-value=0.59 Score=27.52 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 999999998678772001289961644203468-9999862045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++..+.. .+ |.=|-|-.-+-..|.|- +.+-..|.|-+ ..|+.+....-.-.|=|-|+ .|+++..+|+
T Consensus 123 ~~~~p~m~~-~g----G~IVnisS~~g~~~~~~~~~Y~asKaal~----~lTr~lA~E~a~~gIrVNaV-aPG~i~T~~~ 192 (272)
T PRK08589 123 KMLLPLMME-QG----GSIINTSSFSGQAADLYRSGYNAAKGAVI----NFTKSIAIEYGRDGIRANAI-APGTIETPLV 192 (272)
T ss_pred HHHHHHHHH-CC----CEEEEEECHHHCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCHHH
T ss_conf 999999997-59----90799912343677898668999999999----99999999972259399999-6488986457
No 296
>PRK08251 short chain dehydrogenase; Provisional
Probab=88.28 E-value=0.54 Score=27.78 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=35.5
Q ss_pred EEEEEC-CCCCCHHH--HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 289961-64420346--899998620453312467653477642235736522443212201047
Q gi|254780506|r 163 HAVVIG-RSNLFGKP--MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 163 ~vvVvG-rs~~VG~P--la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+++.++ -+-..|.| ++.+-..+.|- +..|+.|........|-|+++ .|+|++.+|..
T Consensus 134 ~Iv~isS~ag~~~~p~~~~~Y~aSKaal----~~~~~~L~~El~~~gI~V~~i-~PG~v~T~m~~ 193 (248)
T PRK08251 134 HLVLISSVSAVRGLPGAKTAYAASKAGL----ASLGEGLRAEYAKTPIKVSTI-EPGYIRSEMNE 193 (248)
T ss_pred CEEEEECHHHCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHCCCCEEEEEE-EECCCCCCCCC
T ss_conf 2999957444267899747899999999----999999999846669299999-86899852244
No 297
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.24 E-value=0.63 Score=27.32 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 6765347764223573652244321220104
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
..|+.+....-.-.|=|-++ .|+++...+.
T Consensus 166 ~ltr~lA~ela~~gIRVN~I-aPG~i~T~~~ 195 (252)
T PRK06079 166 SSVRYLARDLGKKGIRVNAI-SAGAIKTLAV 195 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEE-EECCCCCCCC
T ss_conf 99999999984389899999-6377877010
No 298
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.23 E-value=0.88 Score=26.29 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=17.9
Q ss_pred HHHHHCCCCCCCCEEEEECC-----------CCCCHHHHHHHHHH
Q ss_conf 99986787720012899616-----------44203468999986
Q gi|254780506|r 150 LIEQFKGCDLSGQHAVVIGR-----------SNLFGKPMGQLLLS 183 (306)
Q Consensus 150 ll~~y~~i~l~Gk~vvVvGr-----------s~~VG~Pla~lL~~ 183 (306)
+=+++ +++.+.-+..|+|. ..+=|+|+..+...
T Consensus 153 la~~l-~v~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~~ 196 (308)
T cd05292 153 LGEHL-GVDPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKL 196 (308)
T ss_pred HHHHH-CCCHHHCEEEEEECCCCCCEECCCCCEECCEEHHHHHHC
T ss_conf 99984-998000641599457895064142056987998997631
No 299
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=88.23 E-value=0.65 Score=27.21 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=51.3
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEECCCCCC---------------CHHHHHHHCCEEEEECCCCCC------CCCCCCC
Q ss_conf 9616442034689999862045331246765---------------347764223573652244321------2201047
Q gi|254780506|r 166 VIGRSNLFGKPMGQLLLSRNATVTMAHSKTK---------------NLPEICRTADILVVAVGRPRM------VQVDWIK 224 (306)
Q Consensus 166 VvGrs~~VG~Pla~lL~~~~atVti~hs~T~---------------~l~~~~~~ADivIsAvG~p~~------i~~~~vk 224 (306)
|||-++ ||.-|+..|.+.|..|+-++++|. ++.+.+.+||+|+-++.-..+ +.. .++
T Consensus 2 iIGaGr-vG~~L~~al~~aGh~v~gv~srs~~s~~~a~~~~~~~~~~~~ev~~~adlv~itvPDd~I~~vv~~la~-~~~ 79 (111)
T pfam10727 2 IISAGR-VGVALGEALERAGHVVHAISAISDASRERAERRLDSPVLPIPDVIRRAELVVLAVPDAELPGLVEGLAA-TVR 79 (111)
T ss_pred CCCCCH-HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHH-HCC
T ss_conf 437657-799999999978982899983898899999986699767958989767999998978889999999983-267
Q ss_pred CCCEEEEEE
Q ss_conf 662699831
Q gi|254780506|r 225 TGSLVIDVG 233 (306)
Q Consensus 225 ~gavvIDvG 233 (306)
+|.+|+..-
T Consensus 80 ~GqiV~HtS 88 (111)
T pfam10727 80 RGQIVAHTS 88 (111)
T ss_pred CCCEEEECC
T ss_conf 997999866
No 300
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=88.09 E-value=2.5 Score=23.18 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=79.2
Q ss_pred EEECHHH----HHHHHHHHHHHHHHHHHH---------HCCCCCEEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 5005389----999999999999999998---------36999759999967-986789999999999998397000024
Q gi|254780506|r 3 SLIDGKV----VASVLTDKIAESVAFLKK---------ETGVQVGLAVVLVG-NDPASCSYVSAKTRMAKHCGFHSVQYN 68 (306)
Q Consensus 3 ~iLdGk~----iA~~i~~~lk~~i~~l~~---------~~g~~P~LavIlvG-ddpaS~~Yv~~K~K~a~~lGI~~~~~~ 68 (306)
..|+|++ ++++.++++.+-++.|-- +.++...+++|.-. +||--...++..++.|++-|....+..
T Consensus 19 rvLNg~~~~~~Vs~~Tr~rV~~aa~eLgY~Pn~~Ar~L~~~~t~~Igvvvp~~~n~~~~~l~~~i~~~~~~~gy~~li~~ 98 (330)
T PRK11303 19 YVINGKAKQYRISDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKLLEQQARQRGYQLLIAC 98 (330)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 88389998887699999999999999689948889886308777677754544431567888999999996698799994
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH-HHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 74111226699999985231221258883468871137-88986068743513215533888730477887567667999
Q gi|254780506|r 69 FPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSE-QSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGA 147 (306)
Q Consensus 69 l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~-~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av 147 (306)
-..+ .+.-.+.++.|. ...|||+|+.-.+|..-+. ..+.+.--|-==+| +-.....-+....---.|.
T Consensus 99 s~~~--~~~e~~~~~~l~-~~~vdgiIv~~~~~~~~~~~~~l~~~~iPvV~i~--------~~~~~~~~~~V~~d~~~~~ 167 (330)
T PRK11303 99 SDDQ--PDNEMQCAEHLL-QRQVDALIVATSLPPEHPFYQRLQNDGFPIIALD--------RALDREHFTSVVSDDQDAA 167 (330)
T ss_pred CCCC--HHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEC--------CCCCCCCCCEEEECCHHHH
T ss_conf 7999--899999999999-7489989994688886299999984699789972--------5678888998997219999
Q ss_pred HHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 99999867877200128996164
Q gi|254780506|r 148 ILLIEQFKGCDLSGQHAVVIGRS 170 (306)
Q Consensus 148 ~~ll~~y~~i~l~Gk~vvVvGrs 170 (306)
....+|. ++.-.+++..+|-.
T Consensus 168 ~~a~~~L--~~~GhrrI~~i~~~ 188 (330)
T PRK11303 168 EMLAESL--LKFPAESILLLGAL 188 (330)
T ss_pred HHHHHHH--HHCCCCEEEEEECC
T ss_conf 9999999--98699979999689
No 301
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=88.08 E-value=1.6 Score=24.57 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=55.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECC-------------------CCCCCHHHHHHH------CCEEEE
Q ss_conf 7720012899616442034689999862045-33124-------------------676534776422------357365
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAH-------------------SKTKNLPEICRT------ADILVV 210 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~h-------------------s~T~~l~~~~~~------ADivIs 210 (306)
.++.|.+++|+|.+. +|.=.++++...||. |.++. ....++.+.++. +|+++-
T Consensus 160 ~~~~g~~VlV~GaG~-vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~~~~~~~~~~t~~~G~Dvvid 238 (341)
T PRK05396 160 FDLVGEDVLITGAGP-IGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLE 238 (341)
T ss_pred CCCCCCEEEEECCCC-CCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 577888699989975-4329999999849928999948999999898649949996885068999999748999769998
Q ss_pred ECCCCCCCCC--CCCCCCCEEEEEEEE
Q ss_conf 2244321220--104766269983111
Q gi|254780506|r 211 AVGRPRMVQV--DWIKTGSLVIDVGIN 235 (306)
Q Consensus 211 AvG~p~~i~~--~~vk~gavvIDvGi~ 235 (306)
++|.+..+.. +++++|-.++=+|+.
T Consensus 239 ~~G~~~~~~~~~~~l~~gG~vv~~G~~ 265 (341)
T PRK05396 239 MSGAPSAFRQMLDAMNHGGRIAMLGIP 265 (341)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 789899999999986359899999557
No 302
>PRK07985 oxidoreductase; Provisional
Probab=88.04 E-value=0.73 Score=26.86 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=12.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 20012899616442034689999862045331
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTM 190 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti 190 (306)
|+||.++|-|-|.=+|+-+|..|.+.||.|.+
T Consensus 47 L~gKvalVTGas~GIG~aiA~~lA~~GA~Vvi 78 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAI 78 (294)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 89997999172669999999999987999999
No 303
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=87.96 E-value=0.6 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=21.3
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 9998620453312467653477642235736522443212201047
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.+-..|.|-. ..|+.+.....+--|-|-|+. |+++..+|+.
T Consensus 151 ~Y~asKaav~----~ltk~lA~ela~~gIrVNaV~-PG~i~T~~~~ 191 (250)
T TIGR03206 151 VYAACKGGLV----AFSKTMAREHARHGITVNVVC-PGPTDTALLD 191 (250)
T ss_pred HHHHHHHHHH----HHHHHHHHHHCCCCEEEEEEE-ECCCCCHHHH
T ss_conf 8999999999----999999999653291899997-6888867789
No 304
>PRK08303 short chain dehydrogenase; Provisional
Probab=87.92 E-value=0.29 Score=29.67 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCC-CCCCEEEEE
Q ss_conf 99999999839700002474111226699999985231-221258883
Q gi|254780506|r 51 SAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKD-DSIHGILVQ 97 (306)
Q Consensus 51 ~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d-~~V~GIlvQ 97 (306)
+...+..++.|.....+... -++++++.+.+++.-+. -.+| |+|-
T Consensus 56 ~e~a~~i~~~Gg~~~~v~~D-vsd~~~v~~~v~~~~~~~G~lD-ILVN 101 (305)
T PRK08303 56 EETAELVTAAGGRGIAVQVD-HLVPEQVRALVERIDREQGRLD-ILVN 101 (305)
T ss_pred HHHHHHHHHCCCEEEEEECC-CCCHHHHHHHHHHHHHHCCCCC-EEEE
T ss_conf 99999999759908999756-8999999999999999529620-8985
No 305
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.87 E-value=0.65 Score=27.22 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEE
Q ss_conf 9999999839700002474111-226699999985231-2212588
Q gi|254780506|r 52 AKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGIL 95 (306)
Q Consensus 52 ~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIl 95 (306)
...+.+++.|-... ++-|+ +++++.+.+++.-+. ..+|+.+
T Consensus 47 ~~~~~~~~~g~~~~---~~~Dv~~~~~v~~~v~~~~~~~g~iD~LV 89 (260)
T PRK06997 47 RITEFAAEFGSDLV---FPCDVADDAQIDALFASLGTRWDGLDGLV 89 (260)
T ss_pred HHHHHHHHCCCCEE---EECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999986298479---98379999999999999999849989896
No 306
>PRK06484 short chain dehydrogenase; Validated
Probab=87.81 E-value=0.61 Score=27.41 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 7720012899616442034689999862045331246765
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK 196 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~ 196 (306)
..++||.++|-|-+.=.|+-+|..|.++||+|.++...-.
T Consensus 270 ~~~kGKvalVTGaa~GIG~aiA~~la~~GA~Vvi~d~~~~ 309 (530)
T PRK06484 270 PVRAGRVVCVTGGASGIGAAIADRFAALGDRVAIIDSDGE 309 (530)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 6778989999287678999999999988798999958889
No 307
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.80 E-value=0.75 Score=26.80 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999839700002474111226699999985
Q gi|254780506|r 51 SAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSL 85 (306)
Q Consensus 51 ~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~L 85 (306)
+...+.+++.|.++..+... -++.+++.+.+++.
T Consensus 42 ~~~~~~~~~~g~~~~~~~~D-vs~~~~v~~~~~~~ 75 (249)
T PRK06077 42 NETLRMVKEYGGEGIGVLAD-VSTREGCRTLAKAA 75 (249)
T ss_pred HHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHH
T ss_conf 99999999759958999847-99999999999999
No 308
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=87.65 E-value=0.85 Score=26.39 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=25.3
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99986204533124676534776422357365224432122010476
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.+-..+.|.. .-|+.+.....+-.|-|-++ .|+++..+|.+.
T Consensus 155 ~Y~asKaav~----~ltr~lA~e~a~~gIrVN~I-aPG~i~T~~~~~ 196 (251)
T PRK12481 155 SYTASKSAVM----GLTRALATELSQYNINVNAI-APGYMATDNTAA 196 (251)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCCHHH
T ss_conf 4799999999----99999999970309699999-528887775211
No 309
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.64 E-value=0.4 Score=28.68 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=10.5
Q ss_pred CCCCCCCCEEEEEEEEEC
Q ss_conf 010476626998311111
Q gi|254780506|r 220 VDWIKTGSLVIDVGINRI 237 (306)
Q Consensus 220 ~~~vk~gavvIDvGi~~~ 237 (306)
.+|+.-..++||-|.|..
T Consensus 235 ss~iTG~~i~VDGG~si~ 252 (274)
T PRK08415 235 ASGVTGEIHYVDAGYNIM 252 (274)
T ss_pred HCCCCCCEEEECCCHHHC
T ss_conf 357368715778793321
No 310
>PRK06181 short chain dehydrogenase; Provisional
Probab=87.62 E-value=0.57 Score=27.61 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=70.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCC------EEEEECCCCCCHHHHH
Q ss_conf 9996798678999999999999839700002474111-226699999985231-2212------5888346887113788
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIH------GILVQLPLPSTVSEQS 108 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~------GIlvQlPLP~~id~~~ 108 (306)
+++++-+++.. +...+.+++.|.++..+.. |+ +++++.+.+++.-+. -.+| ||...-|+.+.-+
T Consensus 28 vvl~~r~~~~l---~~~~~~l~~~g~~~~~~~~--Dvs~~~~~~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~--- 99 (263)
T PRK06181 28 LVLAARNEERL---ASLAQELANYGAEALVVAT--DVSDAEACERLIEAAVAHFGGIDILVNNAGMTMWSRFDELTD--- 99 (263)
T ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEE--CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCC---
T ss_conf 99998899999---9999999954996799980--799999999999999998299648998785678887232686---
Q ss_pred HHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHCCC
Q ss_conf 98606874351321553388873047788756766799999999867877200128996164420346899-99862045
Q gi|254780506|r 109 IIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQ-LLLSRNAT 187 (306)
Q Consensus 109 i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~-lL~~~~at 187 (306)
..+.|-+-..|+-- ..=|| .+++..|+.- .|.=+.|---+-..|.|-.. +-..+.|
T Consensus 100 -------~~~~~~~~~vN~~g---------~~~~~-~~~lp~m~~~-----~G~IvnisS~ag~~~~p~~~~Y~aSK~a- 156 (263)
T PRK06181 100 -------LSVLEDVMRVNYLG---------AVYCT-HAALPHLKAS-----QGQIVVVSSLAGLTGVPTRSGYAASKHA- 156 (263)
T ss_pred -------HHHHHHHHHHHHHH---------HHHHH-HHHHHHHHHC-----CCEEEEEECHHHCCCCCCCHHHHHHHHH-
T ss_conf -------99999999998299---------99999-9999998638-----9379999475552778997359999999-
Q ss_pred EEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 33124676534776422357365224432122010476
Q gi|254780506|r 188 VTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 188 Vti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.+..|+.|......-.|-|.++ .|+++..+|.+.
T Consensus 157 ---v~~~t~~la~El~~~gIrVn~v-~PG~v~T~~~~~ 190 (263)
T PRK06181 157 ---LHGFFDSLRIELADTGVAVTVV-CPGFVATDIRKR 190 (263)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCHH
T ss_conf ---9999999999847559399999-728898974700
No 311
>PRK08324 short chain dehydrogenase; Validated
Probab=87.62 E-value=0.74 Score=26.83 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=35.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 772001289961644203468999986204533124676
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT 195 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T 195 (306)
-+|+||.++|.|-+.-+|+-+|.-|.++||.|.++....
T Consensus 417 ~~L~GKVALVTGga~GIG~A~A~~fa~eGA~Vvl~D~~~ 455 (676)
T PRK08324 417 KPLAGKVALVTGAAGGIGLATAKRLAAEGACVVLADIDE 455 (676)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 888998799947988162999999998799899995888
No 312
>PRK09134 short chain dehydrogenase; Provisional
Probab=87.50 E-value=0.84 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=11.2
Q ss_pred EECCCCCCCCHHHHHHHHHHHH
Q ss_conf 0089869868689999999999
Q gi|254780506|r 261 AITPVPGGVGPMTIAMLMANTV 282 (306)
Q Consensus 261 ~iTPVPGGVGp~Tva~L~~N~v 282 (306)
.-+|.-.-.-|--+|-...-++
T Consensus 207 ~~~pl~R~~~pediA~~v~fLa 228 (256)
T PRK09134 207 AATPLGRGPNPEEIGAALRYLL 228 (256)
T ss_pred HCCCCCCCCCHHHHHHHHHHHH
T ss_conf 3799889969999999999997
No 313
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.27 E-value=1.4 Score=24.95 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6699999985231221258883468871137889860687435132155338887304-778875676679999999986
Q gi|254780506|r 76 IDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIG-DFTTGLVPCTPAGAILLIEQF 154 (306)
Q Consensus 76 ~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~-~~~~~~~PcTp~av~~ll~~y 154 (306)
.++.+.|+++-.+. .|+.- =-+.+..+++.+...-...+=|+|++|=-.++.- +- -.-|.|...++..+..|
T Consensus 98 ~~v~~~l~~~~~~~---~IlaS--NTSsl~is~ia~~~~~p~R~ig~HffnP~~~~~lVEv--v~g~~Ts~e~i~~~~~~ 170 (289)
T PRK09260 98 QAVFETADAHAPAE---ALIAT--NTSTLSPTEIASATKRPERVIGMHFFNPVHKMKLVEL--VRGLETSDETVAVCREV 170 (289)
T ss_pred HHHHHHHHHCCCCC---CEEEE--CCCCCCCHHHHHHCCCHHHEEEECCCCCHHHHEEEEE--CCCCCCCHHHHHHHHHH
T ss_conf 89999986068998---08985--5888771145541598466264124774322123564--58999999999999999
Q ss_pred CCCCCCCCEEEEECCC
Q ss_conf 7877200128996164
Q gi|254780506|r 155 KGCDLSGQHAVVIGRS 170 (306)
Q Consensus 155 ~~i~l~Gk~vvVvGrs 170 (306)
. .--||..+++...
T Consensus 171 ~--~~lgk~pv~v~d~ 184 (289)
T PRK09260 171 A--EQLGKETVVVNEF 184 (289)
T ss_pred H--HHCCCCEEEECCC
T ss_conf 9--9749842785688
No 314
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=87.21 E-value=1.2 Score=25.44 Aligned_cols=66 Identities=29% Similarity=0.468 Sum_probs=38.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECCC-----------------CCCCHHHHHHHCCEEEEECCCCCCCC------C
Q ss_conf 899616442034689999862045331246-----------------76534776422357365224432122------0
Q gi|254780506|r 164 AVVIGRSNLFGKPMGQLLLSRNATVTMAHS-----------------KTKNLPEICRTADILVVAVGRPRMVQ------V 220 (306)
Q Consensus 164 vvVvGrs~~VG~Pla~lL~~~~atVti~hs-----------------~T~~l~~~~~~ADivIsAvG~p~~i~------~ 220 (306)
+.+||.++ .|.-++.-|.+.|..++++.+ .+.+..+.++++|+||-|+- |..+. +
T Consensus 2 Ig~IG~G~-mg~ai~~~l~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIilavk-p~~~~~vl~~i~ 79 (93)
T pfam03807 2 IGIIGAGN-MGEALARGLAAAGHEVIIANSRNPEKAAALAEELGVGATAVSNEEAAEEADVVILAVK-PEDAPEVLAELA 79 (93)
T ss_pred EEEECCHH-HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEEC-HHHHHHHHHHHH
T ss_conf 89997009-9999999999779961278648789999999981997645899999744998999979-999999999876
Q ss_pred CCCCCCCEEEEE
Q ss_conf 104766269983
Q gi|254780506|r 221 DWIKTGSLVIDV 232 (306)
Q Consensus 221 ~~vk~gavvIDv 232 (306)
+.+ +|.++|++
T Consensus 80 ~~~-~~k~vISv 90 (93)
T pfam03807 80 DLL-KGKLVISI 90 (93)
T ss_pred HHC-CCCEEEEE
T ss_conf 250-89999980
No 315
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.19 E-value=1.4 Score=24.97 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=52.4
Q ss_pred CCCCCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHC-CCCCCCCCCCHHH
Q ss_conf 741112-26699999985231221258883468871137889860687435132155338887304-7788756766799
Q gi|254780506|r 69 FPVDIS-QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIG-DFTTGLVPCTPAG 146 (306)
Q Consensus 69 l~~~~s-e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~-~~~~~~~PcTp~a 146 (306)
.+|+.. ..++.+.|+++-.. +-|+.-- -+.+..+++.+...--.-+=|+|++|=-.++.- +- -.-+.|...
T Consensus 92 v~E~l~iK~~lf~~le~~~~~---~~IlaSN--TSsl~it~la~~~~~p~R~ig~HffnP~~~m~LVEi--v~g~~Ts~e 164 (288)
T PRK08293 92 VPEDPEIKGDFYEQLAEVAPE---KTIFATN--SSTLLPSQFADATGRPEKFLALHFANHIWKNNTAEI--MGHPGTDPE 164 (288)
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CEEEEEC--CCCCCHHHHHHHCCCCHHEEEECCCCCCCCCCEEEE--CCCCCCCHH
T ss_conf 808799999999999974677---6699866--876765799886199223343033588342752644--389999999
Q ss_pred HHHHHHHHCCCCCCCCEEEEECC---CCCCHHHHHHHH
Q ss_conf 99999986787720012899616---442034689999
Q gi|254780506|r 147 AILLIEQFKGCDLSGQHAVVIGR---SNLFGKPMGQLL 181 (306)
Q Consensus 147 v~~ll~~y~~i~l~Gk~vvVvGr---s~~VG~Pla~lL 181 (306)
+++-+..+ ..--||.-+|+++ +-++.|=++.++
T Consensus 165 ~~~~~~~~--~~~lgk~pvvv~~d~pGFi~NRl~~~~~ 200 (288)
T PRK08293 165 VYETVVAF--AKAIGMVPIVLKKEQPGYILNSLLVPFL 200 (288)
T ss_pred HHHHHHHH--HHHCCCEEEEECCCCCCEEHHHHHHHHH
T ss_conf 99999999--9983998999857769840999999999
No 316
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=87.18 E-value=1.1 Score=25.71 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=8.7
Q ss_pred ECCCCCCCHHHHH
Q ss_conf 1246765347764
Q gi|254780506|r 190 MAHSKTKNLPEIC 202 (306)
Q Consensus 190 i~hs~T~~l~~~~ 202 (306)
.-|++++.++.+.
T Consensus 178 ~~HrH~pEI~q~~ 190 (314)
T PRK11863 178 LAHKHLPEMQAHA 190 (314)
T ss_pred CCCCCHHHHHHHH
T ss_conf 6757899999985
No 317
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.17 E-value=1.4 Score=24.97 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=4.0
Q ss_pred CCCCCCEEEEE
Q ss_conf 77200128996
Q gi|254780506|r 157 CDLSGQHAVVI 167 (306)
Q Consensus 157 i~l~Gk~vvVv 167 (306)
++.+.-++-|+
T Consensus 163 v~~~~V~a~Vi 173 (310)
T cd01337 163 LDPAKVNVPVI 173 (310)
T ss_pred CCHHHCEEEEE
T ss_conf 78777066798
No 318
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.16 E-value=2.4 Score=23.24 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 2001289961644203468999986204533124676
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT 195 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T 195 (306)
-..|+++|||-+. +|--+|.+|.+.|..||+.+.+.
T Consensus 174 ~~Pk~vvIIGgG~-ig~E~A~~~~~lG~~Vtiv~~~~ 209 (465)
T PRK05249 174 HLPRSLIIYGAGV-IGCEYASIFRGLGVKVDLINTRD 209 (465)
T ss_pred CCCCEEEEECCCC-CHHHHHHHHHHHCCEEEEEECCC
T ss_conf 0797599999982-17999999996098778972166
No 319
>PRK13529 malate dehydrogenase; Provisional
Probab=87.13 E-value=2.4 Score=23.21 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH----HCCC-------EEECCCCC----------
Q ss_conf 87567667999999998678772001289961644203468999986----2045-------33124676----------
Q gi|254780506|r 137 TGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLS----RNAT-------VTMAHSKT---------- 195 (306)
Q Consensus 137 ~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~----~~at-------Vti~hs~T---------- 195 (306)
.+-.-+|-+|++.=++- .+.+++..++++.|.+. -|--+|.++.. .|.+ +.+|.|+-
T Consensus 272 QGTaaV~LAgll~Alri-~g~~l~d~riv~~GAGs-Ag~GIA~~l~~~~~~~Gls~eeA~~~i~~~D~~GLl~~~R~dL~ 349 (563)
T PRK13529 272 QGTAAVTLAGLLAALKI-AGEPLSDQRVVFLGAGS-AGCGIAEQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLL 349 (563)
T ss_pred CHHHHHHHHHHHHHHHH-HCCCHHHCEEEEECCCH-HHHHHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCEECCCCCCC
T ss_conf 03779999999999998-29987784799965774-87899999999998769998987143999948981357998760
Q ss_pred ----------------------CCHHHHHHHC--CEEEEECCCCCCCCCCCCCCCC
Q ss_conf ----------------------5347764223--5736522443212201047662
Q gi|254780506|r 196 ----------------------KNLPEICRTA--DILVVAVGRPRMVQVDWIKTGS 227 (306)
Q Consensus 196 ----------------------~~l~~~~~~A--DivIsAvG~p~~i~~~~vk~ga 227 (306)
.+|.+.++.+ +++|-+-|+|+.|+.++|+.=+
T Consensus 350 ~~k~~fa~~~~~~~~~~~~~~~~~L~evV~~vkPtvLIG~S~~~g~Ft~evv~~Ma 405 (563)
T PRK13529 350 DFQKPFAQKREELSGWKTENDGISLLEVVRNVKPTVLIGVSGQPGAFTEEIIKEMA 405 (563)
T ss_pred HHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99998668854541545567789999999745898899837899987999999998
No 320
>PRK09291 short chain dehydrogenase; Provisional
Probab=86.96 E-value=0.69 Score=27.05 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=64.4
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCC----CEEEEECCCCCCHHHHHHHHH
Q ss_conf 9996798678999999999999839700002474111226699999985231221----258883468871137889860
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSI----HGILVQLPLPSTVSEQSIIQS 112 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V----~GIlvQlPLP~~id~~~i~~~ 112 (306)
+|..+.+.+...-. .+.+++.|..+..+++ |.+...- ..+....+.+| -|+...-|+ .-
T Consensus 29 Vi~~~r~~~~l~~l---~~~~~~~g~~~~~~~l--Dv~~~~~--~~~~~~~~iDvLVNNAGi~~~g~i----------~e 91 (257)
T PRK09291 29 VIAGVQIAPQVTEL---RAEAARRGLALRVEKL--DLTDAID--RARAAEWDVDVLLNNAGIGEAGAL----------VD 91 (257)
T ss_pred EEEEECCHHHHHHH---HHHHHHCCCCEEEEEC--CCCCHHH--HHHHCCCCCCEEEECCCCCCCCCH----------HH
T ss_conf 99996878999999---9999852995599989--8899999--999808999999989856899773----------44
Q ss_pred CCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHCCCEEEC
Q ss_conf 6874351321553388873047788756766799999999867877200128996164420346899-998620453312
Q gi|254780506|r 113 IVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQ-LLLSRNATVTMA 191 (306)
Q Consensus 113 I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~-lL~~~~atVti~ 191 (306)
++ ..|.+-+-..|+--. +-+| .+++..+..- + +|+=|.|-.-+..++.|... +-..+.|-
T Consensus 92 ~~-~~~~~~~~~vNv~g~---------~~lt-q~~lp~M~~~-~---~G~IV~isS~ag~~~~p~~~~Y~aSK~Al---- 152 (257)
T PRK09291 92 IP-VELVRELFETNVFGP---------LELT-QGVVRKMVAR-G---KGKIVFVSSIAGLITGPFTGAYCASKHAL---- 152 (257)
T ss_pred CC-HHHHHHHHHHHHHHH---------HHHH-HHHHHHHHHC-C---CCEEEEECCHHHCCCCCCCCHHHHHHHHH----
T ss_conf 99-999999999997999---------9999-9978999876-9---96899987877668999984199999999----
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 4676534776422357365224432122010476
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.+.|+.|.......-|=|.++ .|+++..+|-..
T Consensus 153 ~~~t~sLa~El~~~GIrVn~I-~PG~v~T~~~d~ 185 (257)
T PRK09291 153 EAIAEAMHAELAPFGIQVATV-NPGPYRTGFNDR 185 (257)
T ss_pred HHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCHH
T ss_conf 999999999843009589999-847999860033
No 321
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=86.82 E-value=2.7 Score=22.86 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=28.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 7200128996164420346899998620453312467
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
+--.++++|||.+. +|-=+|..|.+.|..||+++..
T Consensus 167 ~~lP~~l~IiGgG~-ig~E~A~~~~~~G~~Vtiv~~~ 202 (458)
T PRK06912 167 PSIPKSLLIVGGGV-IGCEFASIYSRLGTKVTIVEMA 202 (458)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEEC
T ss_conf 22796599989974-7999999999659879999844
No 322
>PRK12747 short chain dehydrogenase; Provisional
Probab=86.78 E-value=0.96 Score=26.03 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=22.6
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 9998620453312467653477642235736522443212201047
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.+-..|.|-. .-|+.+....-.-.|-|-+|- |+++..+|.+
T Consensus 157 ~Y~asKaav~----~ltr~lA~ela~~gIrVNaV~-PG~i~T~~~~ 197 (252)
T PRK12747 157 AYSMTKGAIN----TMTFTLAKQLGARGITVNAIL-PGFIKTDMNA 197 (252)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHCCEEEEEEE-ECCCCCCCHH
T ss_conf 7899999999----999999999733395998887-7759873221
No 323
>PRK06197 short chain dehydrogenase; Provisional
Probab=86.60 E-value=0.76 Score=26.74 Aligned_cols=58 Identities=12% Similarity=0.004 Sum_probs=24.2
Q ss_pred EEEECCCHHH-HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9996798678-99999999999983970000247411122669999998523122125888
Q gi|254780506|r 37 VVLVGNDPAS-CSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILV 96 (306)
Q Consensus 37 vIlvGddpaS-~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlv 96 (306)
+|+++-|+.. ..-++...+......+.+...+|..-.+-.++.+.+.+ ..+.+|.++-
T Consensus 43 Vil~~R~~~k~~~a~~~i~~~~~~~~i~~~~lDLssl~sV~~~a~~~~~--~~~~lDvLin 101 (306)
T PRK06197 43 VVLAVRNLDKGNAAAARITAAHPGADVTLQELDLASLASVRAAADALRA--AYPRIDLLIN 101 (306)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH--CCCCCCEEEE
T ss_conf 9999798999999999999768998579997664307789999999996--1898768997
No 324
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.58 E-value=1.2 Score=25.30 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 00128996164420346899998620453312467
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
..++++|||.+. +|--+|.+|.+.|..||+.+..
T Consensus 156 ~p~~v~ViGgG~-ig~E~A~~~~~lG~~Vtli~~~ 189 (438)
T PRK07251 156 LPKRLGILGGGN-IGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEEC
T ss_conf 797699988864-5889999998348768999846
No 325
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.49 E-value=1.2 Score=25.40 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCC-----------CCCHHHHHHHHHH
Q ss_conf 99999999867877200128996164-----------4203468999986
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRS-----------NLFGKPMGQLLLS 183 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs-----------~~VG~Pla~lL~~ 183 (306)
+.-..+=+++ +++-+.-+..|+|-- .+=|.|+..++..
T Consensus 150 R~r~~la~~l-~v~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~~ 198 (313)
T PTZ00117 150 RFRCLLARKL-KVKPSDVSAVVLGGHGDLMVPLTRYVSIGGIPLSEFVKK 198 (313)
T ss_pred HHHHHHHHHH-CCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHC
T ss_conf 9999999996-899221377786056894786452026589618998542
No 326
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=86.49 E-value=3 Score=22.57 Aligned_cols=214 Identities=16% Similarity=0.242 Sum_probs=105.4
Q ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHH
Q ss_conf 96500538999999999999999999836999759999967986789999999999998397000024741112266999
Q gi|254780506|r 1 MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLEN 80 (306)
Q Consensus 1 Ma~iLdGk~iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~ 80 (306)
|.++++|+.--.+. |... .. +.--+++-++.... ......+.|++.||...... .+
T Consensus 1 mse~IyG~haV~ea----------L~~~--~~-~i~~l~v~~~~~~~-~~~~i~~~a~~~~I~v~~v~------~~---- 56 (244)
T PRK11181 1 MSEMIYGIHAVQAL----------LERA--PE-RFIEVFVLKGREDK-RLLPLINELESQGVVIQLAN------RQ---- 56 (244)
T ss_pred CCCEEEEHHHHHHH----------HHCC--CC-CEEEEEEECCCCCH-HHHHHHHHHHHCCCCEEEEC------HH----
T ss_conf 99889879999999----------8389--76-46899985798776-89999999997699779968------99----
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-----HHHC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99985231221258883468871137889860687435-----1321-55338887304778875676679999999986
Q gi|254780506|r 81 AVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKD-----VDGL-HVVNAGKVMIGDFTTGLVPCTPAGAILLIEQF 154 (306)
Q Consensus 81 ~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KD-----VDGl-~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y 154 (306)
.+.++.......|++....-.+.+++..+.+.+...+. .||+ .|.|+|.+++ --..+
T Consensus 57 ~l~~l~~~~~HQGVva~v~~~~~~~~~~l~~~l~~~~~~lil~LD~I~DP~NlGaIiR-----------------sA~af 119 (244)
T PRK11181 57 TLDEKAEGAVHQGIIARVKPAKQLNENDLDDLLASTEQPFLLILDGVTDPHNLGACLR-----------------SADAA 119 (244)
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-----------------HHHHC
T ss_conf 9987516887853799983245478878999983578987999818878738999999-----------------99981
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHH--HHHHCCCEEECCCCCCCHHH---HHHHCCEEEEEC-CC--CCCCCCCCCCCC
Q ss_conf 78772001289961644203468999--98620453312467653477---642235736522-44--321220104766
Q gi|254780506|r 155 KGCDLSGQHAVVIGRSNLFGKPMGQL--LLSRNATVTMAHSKTKNLPE---ICRTADILVVAV-GR--PRMVQVDWIKTG 226 (306)
Q Consensus 155 ~~i~l~Gk~vvVvGrs~~VG~Pla~l--L~~~~atVti~hs~T~~l~~---~~~~ADivIsAv-G~--p~~i~~~~vk~g 226 (306)
| -+.+|+..... -|+.-- =...||.-.+--.+..|+.+ ..+++.+-|.+. +. ..+...++-++-
T Consensus 120 -G-----v~~vil~~~~~--~~~~~~v~k~S~Ga~~~~pi~~~~nl~~~l~~lk~~g~~i~g~~~~~~~~~~~~~~~~~~ 191 (244)
T PRK11181 120 -G-----VHAVIVPKDRS--AQLTATAKKVACGAAETVPLIRVTNLARTMRMLQEKNVWIVGTAGEADHTLYQSKLTGPL 191 (244)
T ss_pred -C-----CCEEEECCCCC--CCCCHHHHHHHHCHHHCCCEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCHHCCCCCE
T ss_conf -9-----98999789977--854258888741423218816958999999998865969995246667664101057876
Q ss_pred CEEEEEEEEECCCCCCCCCEEECCCCHHHHHHCCE--ECCCCCCCCHHHHHHH
Q ss_conf 26998311111267668856841775678731440--0898698686899999
Q gi|254780506|r 227 SLVIDVGINRINSPQLGKTVLVGDVADECKSVVGA--ITPVPGGVGPMTIAML 277 (306)
Q Consensus 227 avvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~a~~--iTPVPGGVGp~Tva~L 277 (306)
++|+ | |+ ++| +..++.+.+.. -=|-.|.+..+-++.=
T Consensus 192 alvl--G-sE------~~G-----l~~~~~~~~d~~v~Ip~~g~~~SLNVsvA 230 (244)
T PRK11181 192 ALVM--G-AE------GEG-----MRRLTREHCDELISIPMAGSVSSLNVSVA 230 (244)
T ss_pred EEEE--C-CC------CCC-----CCHHHHHHCCEEEEECCCCCCCCHHHHHH
T ss_conf 9998--7-77------666-----58999975998998079999855879999
No 327
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.44 E-value=0.86 Score=26.38 Aligned_cols=32 Identities=25% Similarity=0.083 Sum_probs=14.7
Q ss_pred CCCCCHHHHH-HHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 6765347764-22357365224432122010476
Q gi|254780506|r 193 SKTKNLPEIC-RTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 193 s~T~~l~~~~-~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+-|+.|.... ++--|=|=++- |+++..++.+.
T Consensus 201 ~lTr~lA~E~g~~ygIRVNaI~-PG~i~T~~~~~ 233 (298)
T PRK06300 201 SDTKTLAWEAGRRWGIRVNTIS-AGPLASRAGKA 233 (298)
T ss_pred HHHHHHHHHHCCCCCEEEEEEE-CCCCCCCHHHC
T ss_conf 6599999985701180899985-48644712321
No 328
>PRK07024 short chain dehydrogenase; Provisional
Probab=86.31 E-value=0.77 Score=26.71 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=32.9
Q ss_pred EEEEEC-CCCCCHHHHHH-HHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 289961-64420346899-998620453312467653477642235736522443212201047
Q gi|254780506|r 163 HAVVIG-RSNLFGKPMGQ-LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 163 ~vvVvG-rs~~VG~Pla~-lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
+++.++ -+-..|.|-.. +-..+.| .+..++.|....+...|-|+++ .|+|++.+|.+
T Consensus 131 ~Iv~isS~ag~~g~p~~~~Y~ASKaa----l~~~~esL~~el~~~gI~V~~i-~PG~v~T~m~~ 189 (256)
T PRK07024 131 TLVGIASVAGVRGLPGAGAYSASKAA----AIKYLESLRVELRPAGVRVVTI-APGYIRTPMTA 189 (256)
T ss_pred EEEEECCHHHCCCCCCCCHHHHHHHH----HHHHHHHHHHHHCCCCEEEEEE-EECCCCCCCCC
T ss_conf 49984354541689997079999999----9999999999865779489999-71899588777
No 329
>PRK08263 short chain dehydrogenase; Provisional
Probab=86.19 E-value=0.79 Score=26.61 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCCCHHHHHH-HHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 4420346899-998620453312467653477642235736522443212201047662
Q gi|254780506|r 170 SNLFGKPMGQ-LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGS 227 (306)
Q Consensus 170 s~~VG~Pla~-lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ga 227 (306)
+-..|.|... +-..|.|- +..|+.|....+.-.|=|.++ .|++++.+|...++
T Consensus 138 ag~~~~p~~~~Y~ASK~Al----~~lt~sLa~El~~~gIrVn~V-~PG~v~T~~~~~~~ 191 (275)
T PRK08263 138 GGISAFPMVGIYHASKWAL----EGFSEALAQEVAHFGIKVTLV-EPGGYSTDWAGTSA 191 (275)
T ss_pred HHCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHCCEEEEE-ECCCCCCCCCCCCC
T ss_conf 1056799970799999999----999999999840339689999-70887578788877
No 330
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=86.18 E-value=1.3 Score=25.14 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=46.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-C-CEEECCC----------------------------CCCCHHHHHHHCCEEEEE
Q ss_conf 128996164420346899998620-4-5331246----------------------------765347764223573652
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRN-A-TVTMAHS----------------------------KTKNLPEICRTADILVVA 211 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~-a-tVti~hs----------------------------~T~~l~~~~~~ADivIsA 211 (306)
|++.|||.+. ||...|.+|.+|. | -+.+..- -|.|-++ |.++||||..
T Consensus 2 kKisvIGAGf-vGaTTAf~lA~KeLard~VLlDiPqvEg~pqGKALDmyEasPv~gFD~kvTGtnnYaD-TAnSDivViT 79 (308)
T TIGR01763 2 KKISVIGAGF-VGATTAFLLAEKELARDVVLLDIPQVEGVPQGKALDMYEASPVEGFDVKVTGTNNYAD-TANSDIVVIT 79 (308)
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCHH-HCCCCEEEEC
T ss_conf 5589970686-1258999998674067168985055586888633221102776631123625787002-1188379981
Q ss_pred CC---CCCCCCCCCCCCCC
Q ss_conf 24---43212201047662
Q gi|254780506|r 212 VG---RPRMVQVDWIKTGS 227 (306)
Q Consensus 212 vG---~p~~i~~~~vk~ga 227 (306)
.| ||++=+.|-++-++
T Consensus 80 aG~pRKPGMsReDL~s~Na 98 (308)
T TIGR01763 80 AGLPRKPGMSREDLVSVNA 98 (308)
T ss_pred CCCCCCCCCCHHHHHHHCC
T ss_conf 6788754788789986133
No 331
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase; InterPro: IPR006398 These sequences represent 2-hydroxy-3-oxopropionate reductase (1.1.1.60 from EC), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism , .; GO: 0008679 2-hydroxy-3-oxopropionate reductase activity, 0046487 glyoxylate metabolic process.
Probab=85.98 E-value=1.8 Score=24.21 Aligned_cols=74 Identities=26% Similarity=0.455 Sum_probs=49.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC--------------CHHHHHHHCCEEEEECCC-CCC----CCCC---
Q ss_conf 899616442034689999862045331246765--------------347764223573652244-321----2201---
Q gi|254780506|r 164 AVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK--------------NLPEICRTADILVVAVGR-PRM----VQVD--- 221 (306)
Q Consensus 164 vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~--------------~l~~~~~~ADivIsAvG~-p~~----i~~~--- 221 (306)
+.-||=+ +-|+|+|.-|.+.|..+++....-+ ..++.++++||||+=+.- |+. +-++
T Consensus 2 vgfIGLG-IMG~PMs~NL~kAGyql~v~t~~~e~~d~l~aaGa~~a~ta~~~~e~~Dvi~~MvP~sPqVeeva~GenGi~ 80 (291)
T TIGR01505 2 VGFIGLG-IMGKPMSKNLLKAGYQLVVATLEQEVLDELLAAGAESAETAKEVVEDADVIVTMVPDSPQVEEVAFGENGIL 80 (291)
T ss_pred EEEEECC-CCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCC
T ss_conf 0456358-778657899975494688830770489999861732289999999748979984387697015655687521
Q ss_pred -CCCCCCEEEEE-EEEECC
Q ss_conf -04766269983-111112
Q gi|254780506|r 222 -WIKTGSLVIDV-GINRIN 238 (306)
Q Consensus 222 -~vk~gavvIDv-Gi~~~~ 238 (306)
-=|+|+++||. .|++..
T Consensus 81 e~ak~G~~lvDMSSI~P~~ 99 (291)
T TIGR01505 81 EAAKKGKVLVDMSSIAPLE 99 (291)
T ss_pred CCCCCCCEEEECCCCCCHH
T ss_conf 2568887788705678266
No 332
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.82 E-value=2.4 Score=23.32 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=13.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 00128996164420346899998620
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRN 185 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~ 185 (306)
.|+++.+.|. +|.|+..+....+
T Consensus 129 ~g~~~~~~GN---IG~p~l~~~~~~d 151 (450)
T PRK01368 129 NGLDYPVAGN---IGVPALQAKASKD 151 (450)
T ss_pred CCCCEEEECC---CCHHHHHCCCCCC
T ss_conf 5996289625---5636652526897
No 333
>KOG4169 consensus
Probab=85.75 E-value=0.99 Score=25.92 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=87.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH----------------HCCCCCCHHHCCHHHHHHHHHCCCCCCCC
Q ss_conf 69999998523122125888346887113788986----------------06874351321553388873047788756
Q gi|254780506|r 77 DLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQ----------------SIVPEKDVDGLHVVNAGKVMIGDFTTGLV 140 (306)
Q Consensus 77 el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~----------------~I~p~KDVDGl~~~N~g~l~~~~~~~~~~ 140 (306)
|..+.+++.| |++.-+++|+-+-..-+.+..++ -|.-+||+|--=..|+.. ++
T Consensus 43 ~a~akL~ai~--p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtg---------vi 111 (261)
T KOG4169 43 EAIAKLQAIN--PSVSVIFIKCDVTNRGDLEAAFDKILATFGTIDILINGAGILDDKDWERTINVNLTG---------VI 111 (261)
T ss_pred HHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCHHH---------HH
T ss_conf 9999886039--984399998012007889999999998709457997166444612077865022212---------00
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-HHHHHH--HHHCCCEEECCCCCCCH--HHHHHHCCEEEEECCCC
Q ss_conf 76679999999986787720012899616442034-689999--86204533124676534--77642235736522443
Q gi|254780506|r 141 PCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGK-PMGQLL--LSRNATVTMAHSKTKNL--PEICRTADILVVAVGRP 215 (306)
Q Consensus 141 PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~-Pla~lL--~~~~atVti~hs~T~~l--~~~~~~ADivIsAvG~p 215 (306)
--| ..++.-+++. --|+-=.||+-|.+.|- |....- ...-|-|. -.|+.+ ..+.++.-|-+-|+ .|
T Consensus 112 n~T-~~alpyMdk~----~gG~GGiIvNmsSv~GL~P~p~~pVY~AsKaGVv---gFTRSla~~ayy~~sGV~~~av-CP 182 (261)
T KOG4169 112 NGT-QLALPYMDKK----QGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVV---GFTRSLADLAYYQRSGVRFNAV-CP 182 (261)
T ss_pred HHH-HHHHHHHHHH----CCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCEE---EEEHHHHHHHHHHHCCEEEEEE-CC
T ss_conf 336-6630445543----4999818997011026676642023232001156---4205422456676558799997-78
Q ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 21220104766269983111112676688568417756787314400898698686899999999999999986889855
Q gi|254780506|r 216 RMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPK 295 (306)
Q Consensus 216 ~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~~ 295 (306)
+|.+.+++..= .+. + ..-+.+++.++.-..++--+ .+.+-.|.+.+-|+ ..+...
T Consensus 183 G~t~t~l~~~~----------~~~---~---~~~e~~~~~~~~l~~~~~q~-------~~~~a~~~v~aiE~--~~NGai 237 (261)
T KOG4169 183 GFTRTDLAENI----------DAS---G---GYLEYSDSIKEALERAPKQS-------PACCAINIVNAIEY--PKNGAI 237 (261)
T ss_pred CCCHHHHHHHH----------HHC---C---CCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHHHH--CCCCCE
T ss_conf 73148999988----------851---8---84401689999999755688-------79999999999764--258858
Q ss_pred CCC
Q ss_conf 564
Q gi|254780506|r 296 FDA 298 (306)
Q Consensus 296 ~~~ 298 (306)
|-.
T Consensus 238 w~v 240 (261)
T KOG4169 238 WKV 240 (261)
T ss_pred EEE
T ss_conf 997
No 334
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.73 E-value=3 Score=22.61 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=8.2
Q ss_pred EEEECCCHHHHHHHHHH
Q ss_conf 99967986789999999
Q gi|254780506|r 37 VVLVGNDPASCSYVSAK 53 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K 53 (306)
+.+++-||.-.-=++..
T Consensus 27 V~lw~r~~~~~~~i~~~ 43 (329)
T COG0240 27 VRLWGRDEEIVAEINET 43 (329)
T ss_pred EEEEECCHHHHHHHHHC
T ss_conf 69996289999999734
No 335
>PRK06128 oxidoreductase; Provisional
Probab=85.71 E-value=0.93 Score=26.11 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC
Q ss_conf 72001289961644203468999986204533124
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~h 192 (306)
.|+||.++|-|-|.=.|+-+|..|.++||.|.++.
T Consensus 52 rL~GKvAlVTGgssGIG~AiA~~lA~eGA~Vvi~~ 86 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIVLNY 86 (300)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 78999589917366999999999998699999942
No 336
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=85.38 E-value=3.4 Score=22.21 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=49.8
Q ss_pred EEEEEEECCCHHHHH-HHHHHHHHHHHCCCCEEECCCC------CCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH--
Q ss_conf 599999679867899-9999999999839700002474------1112266999999852312212588834688711--
Q gi|254780506|r 34 GLAVVLVGNDPASCS-YVSAKTRMAKHCGFHSVQYNFP------VDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV-- 104 (306)
Q Consensus 34 ~LavIlvGddpaS~~-Yv~~K~K~a~~lGI~~~~~~l~------~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i-- 104 (306)
++-+.++|+++.--. =.-.+...-.++|+..+.+.+. +.++++|+.+.++++-+.-.+.. -..-+-++.+
T Consensus 160 ~~ki~~iG~~~~g~~~~~~d~~~~~~~fG~~v~~~~~~el~~~~~~v~~~ev~~~~~~~~~~~~~~~-~~~~~~~e~l~~ 238 (452)
T cd00578 160 GLRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEVGELVRRIDEVSDEEVEELLEEYEENYDVVL-DAKGLTDESLRK 238 (452)
T ss_pred CCCEEEECCCCCCCEEECCCHHHHHHHHCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHH
T ss_conf 8956998998788552156999999975948998569999999985899999999999998603256-767789999999
Q ss_pred --HHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf --3788986068743513215533888730477887567667999
Q gi|254780506|r 105 --SEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGA 147 (306)
Q Consensus 105 --d~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av 147 (306)
...-.+..+--+.+.|++...-...+ . + -+..||.+.+-
T Consensus 239 ~ar~~~al~~~~~~~~~~a~a~~c~~~l-~-~--~~~~pc~a~s~ 279 (452)
T cd00578 239 AARLYLALRRLLEDGGLDAFTIQCFEDL-T-D--LGQLPCLAEQR 279 (452)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCHHH-H-H--CCCCCCHHHHH
T ss_conf 9999999999999669859996540666-4-1--05773198898
No 337
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.37 E-value=1.2 Score=25.30 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=34.4
Q ss_pred CCEEECHHHH----H---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 9650053899----9---99999999999999983699975999996798678999999999999839700002474111
Q gi|254780506|r 1 MGSLIDGKVV----A---SVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI 73 (306)
Q Consensus 1 Ma~iLdGk~i----A---~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~ 73 (306)
|+.+|.||.. | .-|-..+.+.. .+.|.. + ++...+.+. .+..++.+++.|-.+. ++.|+
T Consensus 1 M~g~L~GK~alITGaa~~~GIG~aiA~~L----a~~GA~--V--~i~~~~e~~---~~~~~~~~~~~g~~~~---~~~Dv 66 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQL----AAQGAE--L--AFTYQGDAL---GKRVKPLAESLGSDLV---LPCDV 66 (271)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHH----HHCCCE--E--EEEECCHHH---HHHHHHHHHHCCCCEE---EECCC
T ss_conf 98757999799979999854999999999----986999--9--998186688---9999999996498189---98379
Q ss_pred C-HHHHHHHHHHHCCC-CCCCEEE
Q ss_conf 2-26699999985231-2212588
Q gi|254780506|r 74 S-QIDLENAVLSLNKD-DSIHGIL 95 (306)
Q Consensus 74 s-e~el~~~I~~LN~d-~~V~GIl 95 (306)
+ ++++.+.++++.+. -.+|..+
T Consensus 67 sd~~~v~~~v~~~~~~~G~iDiLV 90 (271)
T PRK06505 67 EDIASVDAVFEALEKKWGKLDFVV 90 (271)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999999999839987898
No 338
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=85.33 E-value=0.98 Score=25.97 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCC-CCCCCCC
Q ss_conf 676534776422357365224432-1220104
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPR-MVQVDWI 223 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~-~i~~~~v 223 (306)
..|+.+......-.|-|-++- |+ +++..|.
T Consensus 163 ~ltk~lA~e~a~~gIrVN~I~-PG~~~~t~~~ 193 (259)
T PRK12384 163 GLTQSLALDLAEYGITVHSLM-LGNLLKSPMF 193 (259)
T ss_pred HHHHHHHHHHHHHCEEEEEEE-CCCCCCCHHH
T ss_conf 999999999623197999983-8871567666
No 339
>PRK07791 short chain dehydrogenase; Provisional
Probab=85.14 E-value=0.53 Score=27.84 Aligned_cols=34 Identities=21% Similarity=0.050 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHH
Q ss_conf 9999999998397000024741112-26699999985
Q gi|254780506|r 50 VSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLSL 85 (306)
Q Consensus 50 v~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~L 85 (306)
.+...+..+..|.++..+. .|++ ++++.+.+++.
T Consensus 52 a~~~~~ei~~~g~~~~~~~--~Dvsd~~~v~~~v~~~ 86 (285)
T PRK07791 52 AQAVVDEITAAGGEAVANG--DDIADWDQAANLVDAA 86 (285)
T ss_pred HHHHHHHHHHCCCEEEEEE--CCCCCHHHHHHHHHHH
T ss_conf 9999999997498399996--8999999999999999
No 340
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.12 E-value=1.2 Score=25.39 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99986204533124676534776422357365224432122010476
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.+-..+.|-. ..|+.+......-.|-|-++ .|+++..+|..+
T Consensus 167 ~Y~asKaal~----~ltrslA~ela~~gIrVN~V-~PG~~~T~~~~~ 208 (257)
T PRK12859 167 AYATTKGAID----ALTSTLSAEVAHLGITVNAI-NPGPTDTGWMTE 208 (257)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCCCCCCCH
T ss_conf 7899999999----99999999985519189999-768789787799
No 341
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=85.10 E-value=1.3 Score=25.05 Aligned_cols=53 Identities=9% Similarity=0.163 Sum_probs=24.5
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHHCCC-CCCCEEE
Q ss_conf 9967986789999999999998397000024741112-26699999985231-2212588
Q gi|254780506|r 38 VLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLSLNKD-DSIHGIL 95 (306)
Q Consensus 38 IlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~LN~d-~~V~GIl 95 (306)
|....+... .+...+.+++.|-++..+.. |++ ++++.+.+++..+. -.+|.++
T Consensus 35 i~~~~~~~~---~~~~~~~~~~~g~~~~~~~~--Dvs~~~~v~~~~~~~~~~~G~iD~lV 89 (252)
T PRK06947 35 INYARDAAA---AEETADAVRAAGGRACVVAG--DVANEADVIAMFDAVQAAFGRLDALV 89 (252)
T ss_pred EEECCCHHH---HHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 980898789---99999999964992899984--79999999999999999849988999
No 342
>PRK07074 short chain dehydrogenase; Provisional
Probab=85.02 E-value=1 Score=25.80 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=9.4
Q ss_pred HHHHHHCCEEC----CCCCCC
Q ss_conf 67873144008----986986
Q gi|254780506|r 253 DECKSVVGAIT----PVPGGV 269 (306)
Q Consensus 253 ~~~~~~a~~iT----PVPGGV 269 (306)
|=+++.++|+| +|=||.
T Consensus 220 FLaS~~as~iTG~~i~VDGG~ 240 (256)
T PRK07074 220 FLASPAARAITGVCLPVDGGL 240 (256)
T ss_pred HHHCCHHCCCCCCEEEECCCH
T ss_conf 995805359358738858870
No 343
>KOG1201 consensus
Probab=84.92 E-value=1.8 Score=24.13 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCCCCCC----CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699999985231221----2588834688711378898606
Q gi|254780506|r 76 IDLENAVLSLNKDDSI----HGILVQLPLPSTVSEQSIIQSI 113 (306)
Q Consensus 76 ~el~~~I~~LN~d~~V----~GIlvQlPLP~~id~~~i~~~I 113 (306)
.++.+++++-..|.++ -||+--.||.+ .+.+++...+
T Consensus 102 ~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~-~~d~ei~k~~ 142 (300)
T KOG1201 102 YRLAKKVKKEVGDVDILVNNAGIVTGKKLLD-CSDEEIQKTF 142 (300)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCHHHHHHHH
T ss_conf 9999999986199549983664244887567-9989999999
No 344
>PRK06182 short chain dehydrogenase; Validated
Probab=84.81 E-value=1.5 Score=24.62 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=32.3
Q ss_pred EEECCCCC---CHHHHHH-HHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 99616442---0346899-998620453312467653477642235736522443212201047
Q gi|254780506|r 165 VVIGRSNL---FGKPMGQ-LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 165 vVvGrs~~---VG~Pla~-lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.||+-|.+ ++.|... +-..+.| .+..|+.|......-.|=|+++ .|++++.+|..
T Consensus 127 ~IvnisS~ag~~~~p~~~~Y~asK~a----v~~~t~~La~El~~~gI~V~~v-~PG~v~T~~~~ 185 (273)
T PRK06182 127 RIINITSMGGKIYTPLGAWYHATKFA----LEGLSDALRLEVAPFGIDVVVI-EPGGIKTEWGD 185 (273)
T ss_pred EEEEECCHHHCCCCCCCCHHHHHHHH----HHHHHHHHHHHHCHHCCEEEEE-ECCCCCCCCCH
T ss_conf 89998684440779997579999999----9999999999844038789999-73898688640
No 345
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=84.74 E-value=3.1 Score=22.52 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=64.3
Q ss_pred HHHCCCCCCHHHCCHH--HHHHHH-HCCCCCCCCCCCHHHHHHHHHHH----CCCCCCCCEEEEECC-------------
Q ss_conf 8606874351321553--388873-04778875676679999999986----787720012899616-------------
Q gi|254780506|r 110 IQSIVPEKDVDGLHVV--NAGKVM-IGDFTTGLVPCTPAGAILLIEQF----KGCDLSGQHAVVIGR------------- 169 (306)
Q Consensus 110 ~~~I~p~KDVDGl~~~--N~g~l~-~~~~~~~~~PcTp~av~~ll~~y----~~i~l~Gk~vvVvGr------------- 169 (306)
++.|.-.|+ +|++-. +.|.|. .|+.-.+-+| -|..|+..++++ ..-+++||+|+|-+-
T Consensus 201 q~Ni~~L~~-~G~~ii~P~~G~lA~cge~G~GRl~-ep~~Iv~~i~~~l~~~~~~~L~GkkVLITAGpT~E~IDPVR~Is 278 (476)
T PRK13982 201 RRNVAQLKR-DGVHMIGPNAGEMAERGEAGVGRMA-EPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIA 278 (476)
T ss_pred HHHHHHHHC-CCCEECCCCCCCHHCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCCC
T ss_conf 999999861-4988458866601204665778899-99999999999872145555679889996688712226745577
Q ss_pred ---CCCCHHHHHHHHHHHCCCEEECCCCCC----------------CHHHHH---HHCCEEEEECCCCCCCC
Q ss_conf ---442034689999862045331246765----------------347764---22357365224432122
Q gi|254780506|r 170 ---SNLFGKPMGQLLLSRNATVTMAHSKTK----------------NLPEIC---RTADILVVAVGRPRMVQ 219 (306)
Q Consensus 170 ---s~~VG~Pla~lL~~~~atVti~hs~T~----------------~l~~~~---~~ADivIsAvG~p~~i~ 219 (306)
|.--|.-||.-+..+||.||+.+..+. ++.+.+ ..+|++|.|+-.+.|-.
T Consensus 279 N~SSGKmG~aiA~aa~~rGA~VtLIsGp~~l~~P~gv~~i~V~tA~eM~~av~~~~~~Di~I~aAAVsDyrp 350 (476)
T PRK13982 279 NRSSGKQGFAIAAAAAAAGAEVTLISGPVDLRDPQGVKVIHVESAREMLAAVEAALPADIAIFAAAVADWRV 350 (476)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHCCCCCCEE
T ss_conf 668519999999999967997999956677778998469988799999999973313263353222145520
No 346
>PRK06123 short chain dehydrogenase; Provisional
Probab=84.63 E-value=1.4 Score=24.91 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCC---CHHHH--HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 9999999986787720012899616442---03468--999986204533124676534776422357365224432122
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNL---FGKPM--GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQ 219 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~---VG~Pl--a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~ 219 (306)
.+++..+.... .|+.-.||+-|.+ +|.|- +.+-..++|-. +-|+.+....-..-|-|-++ .|+++.
T Consensus 122 ~~~~~~m~~~~----~g~~g~IInisS~~~~~~~~~~~~~Y~asKaav~----~ltr~lA~ela~~gIrvN~I-aPG~i~ 192 (249)
T PRK06123 122 REAVKRMSTRH----GGRGGAIVNVSSMAARLGSPGEYIDYAASKGAID----TMTIGLAKEVAAEGIRVNAV-RPGVIY 192 (249)
T ss_pred HHHHHHHHHHH----CCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHCCEEEEEE-EECCCC
T ss_conf 99999999970----8998379997447656589830687899999999----99999999986559699999-867897
Q ss_pred CCCCCC
Q ss_conf 010476
Q gi|254780506|r 220 VDWIKT 225 (306)
Q Consensus 220 ~~~vk~ 225 (306)
.+|...
T Consensus 193 T~~~~~ 198 (249)
T PRK06123 193 TEIHAS 198 (249)
T ss_pred CCCCCC
T ss_conf 743212
No 347
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=84.43 E-value=1.8 Score=24.12 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=7.3
Q ss_pred CCCEEEE------ECCCCCCH
Q ss_conf 2125888------34688711
Q gi|254780506|r 90 SIHGILV------QLPLPSTV 104 (306)
Q Consensus 90 ~V~GIlv------QlPLP~~i 104 (306)
+|+|.++ |.|+.++.
T Consensus 168 ~V~~~ViGeHGds~vp~~S~~ 188 (309)
T cd05294 168 EVHTRIIGEHGDSMVPLISST 188 (309)
T ss_pred HCEEEEEECCCCCEEEEEEEC
T ss_conf 724468845899555420204
No 348
>PRK06483 short chain dehydrogenase; Provisional
Probab=84.37 E-value=1.9 Score=23.99 Aligned_cols=40 Identities=13% Similarity=0.293 Sum_probs=18.9
Q ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999998397000024741112266999999852312212588
Q gi|254780506|r 54 TRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGIL 95 (306)
Q Consensus 54 ~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIl 95 (306)
....++.|..+...++.+..+-+++.+.+.+. -..+|+++
T Consensus 40 ~~~l~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g~id~lV 79 (236)
T PRK06483 40 IDELRQAGATCIQADFSTNAGIMAFIDELKQH--TDGLRAII 79 (236)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH--HCCCCEEE
T ss_conf 99998569989992279999999999999998--39975999
No 349
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=84.25 E-value=1.1 Score=25.57 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=25.1
Q ss_pred HHHHHCCEEEEECCCC--CCCCCCCCCCCCEEEEEE
Q ss_conf 7642235736522443--212201047662699831
Q gi|254780506|r 200 EICRTADILVVAVGRP--RMVQVDWIKTGSLVIDVG 233 (306)
Q Consensus 200 ~~~~~ADivIsAvG~p--~~i~~~~vk~gavvIDvG 233 (306)
+.....|++++|.+.. .-+-+..++.|..|||..
T Consensus 62 ~~~~~~Dvvf~alp~~~s~~~~~~~~~~g~~VIDlS 97 (121)
T pfam01118 62 EDLKDVDIVFFALPAGVSKELAPKLLEAGAVVIDLS 97 (121)
T ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 785389899983876899999999871598998785
No 350
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.10 E-value=1.8 Score=24.13 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=12.5
Q ss_pred CCCCCCCEEEEECCC-----------CCCHHHHHHHH
Q ss_conf 877200128996164-----------42034689999
Q gi|254780506|r 156 GCDLSGQHAVVIGRS-----------NLFGKPMGQLL 181 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs-----------~~VG~Pla~lL 181 (306)
+++.+.-+..|+|.- .+-|.|+..++
T Consensus 160 ~v~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~ 196 (312)
T PRK06223 160 NVSVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLPDLL 196 (312)
T ss_pred CCCHHHEEEEEECCCCCCEEEEEEEEEECCEEHHHHH
T ss_conf 9896574788972679835545021379979989961
No 351
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.09 E-value=1.2 Score=25.47 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999986889855
Q gi|254780506|r 275 AMLMANTVIAAYRSLGMKSPK 295 (306)
Q Consensus 275 a~L~~N~v~aa~~~~~~~~~~ 295 (306)
.-+-+.+-+..++-+|+.-|.
T Consensus 292 ~~~a~rLW~~SE~L~Gl~fp~ 312 (314)
T PRK05854 292 DADAARLWEVSEQLTGVSFPT 312 (314)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999997889888
No 352
>CHL00194 ycf39 Ycf39; Provisional
Probab=83.97 E-value=2.7 Score=22.93 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=14.7
Q ss_pred HHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 873144008986986868999999999999999
Q gi|254780506|r 255 CKSVVGAITPVPGGVGPMTIAMLMANTVIAAYR 287 (306)
Q Consensus 255 ~~~~a~~iTPVPGGVGp~Tva~L~~N~v~aa~~ 287 (306)
+..+-..++||| +...-+++.+..-.++
T Consensus 220 ~~Gk~~~i~~vP-----~~~~~~~~~~~~~f~~ 247 (319)
T CHL00194 220 LSGQKAKVTRIP-----LFLLKLLRRITGFFEW 247 (319)
T ss_pred HHCCCCCEEECC-----HHHHHHHHHHHHHHHC
T ss_conf 859998778689-----8999999999987233
No 353
>PRK06914 short chain dehydrogenase; Provisional
Probab=83.97 E-value=1.1 Score=25.59 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 999999998678772001289961-6442034689-99986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.+++-.++.. + .| +++.++ -+..+|.|.. .+-..+.|- +..|+.|......-.|=|+++ .|++++.+|
T Consensus 121 ~~~lp~m~~~-~---~G-~IvnisS~~g~~~~p~~~~Y~aSK~Al----~~~t~sL~~El~~~gI~V~~V-~PG~i~T~~ 190 (280)
T PRK06914 121 QAVLPYMRKQ-K---SG-KIINISSISGQVGFPALSPYVSSKYAL----EGWSESLRLEVKPFGIDVALI-EPGSYNTNI 190 (280)
T ss_pred HHHHHHHHHC-C---CC-EEEEECCHHHCCCCCCCHHHHHHHHHH----HHHHHHHHHHHCCCCCEEEEE-ECCCCCCCC
T ss_conf 9997877756-9---95-899983413326899873799999999----999999999843109389999-728987651
Q ss_pred CCCC
Q ss_conf 4766
Q gi|254780506|r 223 IKTG 226 (306)
Q Consensus 223 vk~g 226 (306)
...+
T Consensus 191 ~~~~ 194 (280)
T PRK06914 191 WEVG 194 (280)
T ss_pred CCCC
T ss_conf 1342
No 354
>PRK10262 thioredoxin reductase; Provisional
Probab=83.88 E-value=2 Score=23.82 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 8772001289961644203468999986204533124676
Q gi|254780506|r 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT 195 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T 195 (306)
+..++||+++|+|.++ .+--.|.+|.+..+.|+++|++.
T Consensus 141 ~~~~~~k~VaViGgG~-~A~d~A~~L~~~a~~V~lv~rr~ 179 (321)
T PRK10262 141 GFFYRNQKVAVIGGGN-TAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CHHCCCCEEEEEECCH-HHHHHHHHHHHHCCEEEEEEECC
T ss_conf 3001898799991888-89999999997619899997446
No 355
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.70 E-value=1.5 Score=24.64 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=16.9
Q ss_pred HHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEE
Q ss_conf 999999839700002474111-226699999985231-2212588
Q gi|254780506|r 53 KTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGIL 95 (306)
Q Consensus 53 K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIl 95 (306)
..+..++.|-.. .++ -|+ +++++.+.+.+.-+. ..+|+.+
T Consensus 48 ~~~~~~~~g~~~-~~~--~Dv~~~~~v~~~~~~~~~~~G~iD~LV 89 (261)
T PRK08690 48 VRKMAAELDSEL-VFR--CDVASDDEINQVFADLGKHWDGLDGLV 89 (261)
T ss_pred HHHHHHHCCCCE-EEE--CCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999998739808-998--899999999999999999968987897
No 356
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.62 E-value=3.2 Score=22.44 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC-CCEEECC
Q ss_conf 7200128996164420346899998620-4533124
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRN-ATVTMAH 192 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~-atVti~h 192 (306)
.++..+|.|+|.+. +|-|++..|...| ..+++++
T Consensus 18 kL~~s~VlvvG~GG-LG~~v~~~La~aGvg~i~ivD 52 (197)
T cd01492 18 RLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILD 52 (197)
T ss_pred HHHCCCEEEECCCH-HHHHHHHHHHHHCCCEEEEEE
T ss_conf 99609599988788-999999999983798699998
No 357
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase; InterPro: IPR006416 This group encompasses the copper and cadmium-type heavy metal transporting P-type ATPases as well as those which cannot be assigned to one or other of the groups. ; GO: 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0030001 metal ion transport, 0016021 integral to membrane.
Probab=83.53 E-value=3.1 Score=22.46 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999836999759999967986789999999999998397000024741112266999999852312
Q gi|254780506|r 10 VASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDD 89 (306)
Q Consensus 10 iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~ 89 (306)
+++++|.+.++-|+.|+++.|... .++|-|||.... .+.|+++||+...++ .+...+|=.+.|+++.+..
T Consensus 447 l~D~~R~~a~~~i~~Lk~~~g~~~--~~mLTGD~~~~A------~~~A~~lGI~~~~v~--Ael~P~dK~~~v~~l~~~~ 516 (639)
T TIGR01525 447 LRDQLRPEAKEAIAALKRKGGIIE--VVMLTGDNRAAA------EAVAAELGIEIDEVH--AELLPEDKLAIVKELQAER 516 (639)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCE--EEEECCCCHHHH------HHHHHHHCCCCEEEE--ECCCHHHHHHHHHHHHHHC
T ss_conf 605578547999999997438734--776218888999------999998298500004--4478488999999998520
Q ss_pred --CCCE--EEEECCCCCCHHHHHH
Q ss_conf --2125--8883468871137889
Q gi|254780506|r 90 --SIHG--ILVQLPLPSTVSEQSI 109 (306)
Q Consensus 90 --~V~G--IlvQlPLP~~id~~~i 109 (306)
+=.+ +++ .-+++|.-.-
T Consensus 517 ~S~~~~~~v~M---VGDGiNDAPA 537 (639)
T TIGR01525 517 YSEEGGHVVAM---VGDGINDAPA 537 (639)
T ss_pred CCCCCCCEEEE---ECCCCCHHHH
T ss_conf 41225865899---8288332799
No 358
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=83.41 E-value=4.1 Score=21.64 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=11.8
Q ss_pred EECCCCCCHHHHHHHHHCCC
Q ss_conf 83468871137889860687
Q gi|254780506|r 96 VQLPLPSTVSEQSIIQSIVP 115 (306)
Q Consensus 96 vQlPLP~~id~~~i~~~I~p 115 (306)
+++|||..-|...++-++..
T Consensus 272 ~~l~l~G~HNv~NalAAia~ 291 (459)
T PRK00421 272 FTLPLPGRHNVLNALAAIAV 291 (459)
T ss_pred EEECCCHHHHHHHHHHHHHH
T ss_conf 99568638899999999999
No 359
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=83.23 E-value=1.7 Score=24.29 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 24676534776422357365224432122010476
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
.+..|+.+....-.-.|-|-++ .|+++..+|.+.
T Consensus 160 l~~ltk~lA~Ela~~gIrVN~V-aPG~i~T~~~~~ 193 (246)
T PRK12938 160 IHGFTMSLAQEVATKGVTVNTV-SPGYIGTDMVKA 193 (246)
T ss_pred HHHHHHHHHHHHHHHCEEEEEE-EECCCCCCCHHH
T ss_conf 9999999999960439899999-668798703011
No 360
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=83.19 E-value=1.5 Score=24.66 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 89961644203468999986204533124676
Q gi|254780506|r 164 AVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT 195 (306)
Q Consensus 164 vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T 195 (306)
++|+|.|+ +|+.++..|.+++ .|++.....
T Consensus 1 viI~G~g~-~G~~la~~L~~~~-~v~vId~d~ 30 (115)
T pfam02254 1 IIIIGYGR-VGRSLAEELREGG-PVVVIDKDP 30 (115)
T ss_pred CEEECCCH-HHHHHHHHHHHCC-CEEEEECCH
T ss_conf 99987888-9999999998089-999999987
No 361
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.15 E-value=1.3 Score=25.21 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=34.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC
Q ss_conf 7720012899616442034689999862045331246
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS 193 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs 193 (306)
-+|+||.++|-|-|+=.|+-+|..|.++||+|.++..
T Consensus 203 ~pL~GKVALVTGAArGIG~AIA~~LAreGA~VVi~Di 239 (447)
T PRK08261 203 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDV 239 (447)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8899998999172578999999999986999999827
No 362
>PRK06101 short chain dehydrogenase; Provisional
Probab=83.05 E-value=1.3 Score=25.17 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=36.0
Q ss_pred CCCEEEEEC-CCCCCHHHHHHH-HHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 001289961-644203468999-9862045331246765347764223573652244321220104766
Q gi|254780506|r 160 SGQHAVVIG-RSNLFGKPMGQL-LLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 160 ~Gk~vvVvG-rs~~VG~Pla~l-L~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~g 226 (306)
+|.++++++ -+..+|.|-... -..|.| .+..|+.|......-.|=|.++ .|++++.+|...+
T Consensus 119 ~~~~iv~isS~a~~~~~p~~~~Y~ASKaa----l~~~~~sLa~el~~~gI~V~~V-~PG~v~T~m~~~~ 182 (241)
T PRK06101 119 RGHRVVIVGSIASELALPRAEAYGASKAA----VSYFARTLALDLKKKGIKVVTV-FPGFVATPLTDKN 182 (241)
T ss_pred HCCCEEEECCCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCCCC
T ss_conf 38950577540105688984688999999----9999999999852549589999-7189938887789
No 363
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=83.03 E-value=1.1 Score=25.51 Aligned_cols=57 Identities=25% Similarity=0.453 Sum_probs=39.4
Q ss_pred CCCHHHHHHHCCEEEEECC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHHHHHHCC
Q ss_conf 6534776422357365224-43212201047662699831111126766885684177567873144
Q gi|254780506|r 195 TKNLPEICRTADILVVAVG-RPRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADECKSVVG 260 (306)
Q Consensus 195 T~~l~~~~~~ADivIsAvG-~p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~a~ 260 (306)
..+..|...+.||+|+.+. |.-.+++|||+||+=+==+|-. ..||. -.|++...+|.
T Consensus 185 ~~~p~E~v~~cDilVTtTPsRkPvVkA~WV~eGTHInAiGAD-----apGKq----ELDpeiLk~ak 242 (327)
T TIGR02371 185 ATDPAEKVEDCDILVTTTPSRKPVVKADWVEEGTHINAIGAD-----APGKQ----ELDPEILKKAK 242 (327)
T ss_pred CCCCHHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEECCC-----CCCCC----CCCHHHHHCCC
T ss_conf 126747770786799856898960754225988825510578-----88831----00368763270
No 364
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=82.93 E-value=1.5 Score=24.73 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=4.7
Q ss_pred HHHHCCEEEEE
Q ss_conf 64223573652
Q gi|254780506|r 201 ICRTADILVVA 211 (306)
Q Consensus 201 ~~~~ADivIsA 211 (306)
.....++-|++
T Consensus 223 il~~~~~~vs~ 233 (336)
T PRK05671 223 LLGLPELKVSV 233 (336)
T ss_pred HHCCCCCCCEE
T ss_conf 63488877346
No 365
>PRK05884 short chain dehydrogenase; Provisional
Probab=82.82 E-value=1.5 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=20.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf 9996798678999999999999839700002474111226699999
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAV 82 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I 82 (306)
+++++-+++.. ...+++++.....+...+..+.+++.+.+
T Consensus 27 V~i~~r~~~~l------~~~~~el~~~~~~~d~~d~~~~~~~~~~~ 66 (223)
T PRK05884 27 VTLVGARRDDL------EVAAKELDVDAIVCDNTDPASLEEARGLF 66 (223)
T ss_pred EEEEECCHHHH------HHHHHHCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 99995987899------99985348768998527889999999999
No 366
>KOG3349 consensus
Probab=82.82 E-value=1.6 Score=24.46 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=54.2
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCC-CCCC
Q ss_conf 999999867877200128996164-42034689999862045331246765347764223573652244321220-1047
Q gi|254780506|r 147 AILLIEQFKGCDLSGQHAVVIGRS-NLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQV-DWIK 224 (306)
Q Consensus 147 v~~ll~~y~~i~l~Gk~vvVvGrs-~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~-~~vk 224 (306)
...-|+.+ |+ .|-+.=+||| ...|-|....-++.+-+|... .+.+++.+.++.||+|||-+|---.+.. .-=|
T Consensus 27 ~~~~L~k~-G~---~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y-~f~psl~e~I~~AdlVIsHAGaGS~letL~l~K 101 (170)
T KOG3349 27 FLQELQKR-GF---TKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGY-DFSPSLTEDIRSADLVISHAGAGSCLETLRLGK 101 (170)
T ss_pred HHHHHHHC-CC---CEEEEEECCCCCCCCCHHHHHCCCCCEEEEEE-ECCCCHHHHHHHCCEEEECCCCCHHHHHHHCCC
T ss_conf 99999973-96---38998735886478987775012487589877-338417888753458874587420999997499
Q ss_pred CCCEEEE
Q ss_conf 6626998
Q gi|254780506|r 225 TGSLVID 231 (306)
Q Consensus 225 ~gavvID 231 (306)
|.-+|++
T Consensus 102 PlivVvN 108 (170)
T KOG3349 102 PLIVVVN 108 (170)
T ss_pred CEEEEEC
T ss_conf 7799927
No 367
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.79 E-value=0.65 Score=27.20 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=21.8
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCC-CCCCEEEE
Q ss_conf 9996798678999999999999839700002474111-226699999985231-22125888
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKD-DSIHGILV 96 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d-~~V~GIlv 96 (306)
+++.+.+.+. .+...+.+++.|-.. .++ .|+ +++++.+.++++.+. -.+| |+|
T Consensus 39 V~i~~~~~~~---~~~~~~l~~~~g~~~-~~~--~Dvtd~~~v~~~v~~~~~~~G~iD-iLV 93 (272)
T PRK08159 39 LAFTYQGDAL---KKRVEPLAAELGAFV-VGH--CDVTDEASIDAVFETLEKKWGKLD-FVV 93 (272)
T ss_pred EEEECCCHHH---HHHHHHHHHHCCCEE-EEE--CCCCCHHHHHHHHHHHHHHHCCCC-EEE
T ss_conf 9997486689---999999998649818-998--378999999999999999869978-898
No 368
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.69 E-value=2.8 Score=22.80 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=55.0
Q ss_pred CCCCCCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHC-CCCCCCCCCCHH
Q ss_conf 4741112-26699999985231221258883468871137889860687435132155338887304-778875676679
Q gi|254780506|r 68 NFPVDIS-QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIG-DFTTGLVPCTPA 145 (306)
Q Consensus 68 ~l~~~~s-e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~-~~~~~~~PcTp~ 145 (306)
..+|+.. .+++.+.|+++-.+ +-||-- =-+.+..+.+.....--..+=|+|++|=-.++-- +- -.-|-|..
T Consensus 89 av~E~l~iK~~lf~~le~~~~~---~~IlaS--nTSsl~is~la~~~~~p~R~ig~HffNPp~l~pLVEI--V~g~~Ts~ 161 (308)
T PRK06129 89 SAPENLELKRALFAELDALAPP---HAILAS--STSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEV--VPAPWTAP 161 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC---CEEEEE--CCCCCCHHHHHHHCCCCCCEEEECCCCCHHCCCCEEE--ECCCCCCH
T ss_conf 9807799999999999965698---558984--5553889999974598541788777786000631567--17999898
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECC---CCCCHHHHHHHHH
Q ss_conf 999999986787720012899616---4420346899998
Q gi|254780506|r 146 GAILLIEQFKGCDLSGQHAVVIGR---SNLFGKPMGQLLL 182 (306)
Q Consensus 146 av~~ll~~y~~i~l~Gk~vvVvGr---s~~VG~Pla~lL~ 182 (306)
.++.-...++ .--||.-+++.+ +-++.|=++.++.
T Consensus 162 ~~v~~~~~~~--~~lGk~PV~v~ke~pGFi~NRl~~a~~~ 199 (308)
T PRK06129 162 ATVARAHALY--RAAGQSPVRLRREIDGFVLNRLQGALLR 199 (308)
T ss_pred HHHHHHHHHH--HHCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999999999--9839988999025621589999999999
No 369
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=82.54 E-value=2.5 Score=23.19 Aligned_cols=55 Identities=24% Similarity=0.235 Sum_probs=24.2
Q ss_pred EEECCCCCCH---HH-HHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 9961644203---46-899998620453312467653477642235736522443212201047
Q gi|254780506|r 165 VVIGRSNLFG---KP-MGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 165 vVvGrs~~VG---~P-la~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.||+-|.+.| .+ .+.+-..|.|-.. .|+.+........|-+.++ .|+++..+|.+
T Consensus 137 ~Iv~isS~~~~~~~~~~~~Y~~sK~al~~----~~~~la~el~~~gI~v~~v-~PG~~~t~~~~ 195 (251)
T COG1028 137 RIVNISSVAGLGGPPGQAAYAASKAALIG----LTKALALELAPRGIRVNAV-APGYIDTPMTA 195 (251)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCCCEEEEEE-ECCCCCCCCHH
T ss_conf 89998852103788773079999999999----9999999824168799999-64986873022
No 370
>PRK08643 acetoin reductase; Validated
Probab=82.37 E-value=1.6 Score=24.57 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=61.4
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9996798678999999999999839700002474111-2266999999852312-2125888346887113788986068
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLNKDD-SIHGILVQLPLPSTVSEQSIIQSIV 114 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN~d~-~V~GIlvQlPLP~~id~~~i~~~I~ 114 (306)
+++.+-+... .+...+.+++.|-++..+. -|+ +++++.+.+++..+.- .+| |+|-- . .+.
T Consensus 29 V~i~d~~~~~---~~~~~~~~~~~~~~~~~~~--~Dvt~~~~v~~~~~~~~~~~G~iD-iLVNn---A---------G~~ 90 (256)
T PRK08643 29 VAIVDYNEET---AKAAADKLSSDGGKAIAVK--ADVSNRDQVFDAVQQVVDTFGDLN-VVVNN---A---------GLA 90 (256)
T ss_pred EEEEECCHHH---HHHHHHHHHHCCCEEEEEE--CCCCCHHHHHHHHHHHHHHHCCCC-EEEEC---C---------CCC
T ss_conf 9999698899---9999999985399099998--058999999999999999829987-99989---9---------889
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE-EECCCCCCHHHH-HHHHHHHCCCEEECC
Q ss_conf 743513215533888730477887567667999999998678772001289-961644203468-999986204533124
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAV-VIGRSNLFGKPM-GQLLLSRNATVTMAH 192 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vv-VvGrs~~VG~Pl-a~lL~~~~atVti~h 192 (306)
+.+.++-+++...-+++.-+....|. |+ .+++..++.. + .|-.++ +--.+...|.|- +.+-..|.|..
T Consensus 91 ~~~~~~~~~~~~w~~~~~vNl~g~~~-~~-~~~~~~m~~~-~---~~G~IVnisS~~~~~~~~~~~~Y~asKaav~---- 160 (256)
T PRK08643 91 PTTPIDTITEEQFKKVYGINVGGVIW-GI-QAAQEQFKKL-G---HGGKIINATSQAGVEGNPGLSVYGSTKFAVR---- 160 (256)
T ss_pred CCCCHHHCCHHHHHHHHHHHCHHHHH-HH-HHHHHHHHHH-C---CCCEEEEEECCHHCCCCCCCHHHHHHHHHHH----
T ss_conf 99882559999999999997636899-99-9999999982-8---9927999832101358998489999999999----
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 6765347764223573652244321220104
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
+-|+.+....-.--|-|-++ .|+++..+|.
T Consensus 161 ~ltkslA~ela~~gIrVN~V-~PG~i~T~~~ 190 (256)
T PRK08643 161 GLTQTAARDLASEGITVNAY-APGIVKTPMM 190 (256)
T ss_pred HHHHHHHHHHHHHCCEEEEE-EECCCCCCHH
T ss_conf 99999999987759189999-6066887045
No 371
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.37 E-value=0.72 Score=26.91 Aligned_cols=27 Identities=7% Similarity=0.170 Sum_probs=11.8
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 6765347764223573652244321220
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQV 220 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~ 220 (306)
..|+.+....-.--|=|-|+ .|+++..
T Consensus 168 ~ltr~lA~el~~~gIRVNaI-aPG~i~T 194 (262)
T PRK07984 168 ANVRYMANAMGPEGVRVNAI-SAGPIRT 194 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEE-ECCCCCC
T ss_conf 99999999948588799998-6477655
No 372
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=82.07 E-value=4.6 Score=21.29 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH---H--CCCEEE-C----------------------CCCCCCHHHHHHHCCEE
Q ss_conf 772001289961644203468999986---2--045331-2----------------------46765347764223573
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLS---R--NATVTM-A----------------------HSKTKNLPEICRTADIL 208 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~---~--~atVti-~----------------------hs~T~~l~~~~~~ADiv 208 (306)
++-.-..+.+.|-|.-+|+.+..++.. . +..+++ | .-.|.++.++...||++
T Consensus 198 l~~~~~~iLv~gG~~G~~~~~~~~i~~ll~~~~~~qivvvcGrN~~L~~~L~~~~~~~~~v~vlG~t~~m~~lM~asDll 277 (391)
T PRK13608 198 LDPDKQTILMSAGAFGVSKGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLM 277 (391)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCEE
T ss_conf 99777689996886310246999999997159996599990899999999997624599769970705199999865299
Q ss_pred EEEC
Q ss_conf 6522
Q gi|254780506|r 209 VVAV 212 (306)
Q Consensus 209 IsAv 212 (306)
|+=.
T Consensus 278 ITKp 281 (391)
T PRK13608 278 ITKP 281 (391)
T ss_pred EECC
T ss_conf 9678
No 373
>PRK12831 putative oxidoreductase; Provisional
Probab=81.84 E-value=2.7 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 20012899616442034689999862045331246765
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK 196 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~ 196 (306)
..||+|+|||-++ ++.=.|..+.+.||.|++..+++.
T Consensus 279 ~~Gk~VvVIGGGn-tA~D~arta~R~GaeV~ivyrr~~ 315 (464)
T PRK12831 279 KVGKKVAVVGGGN-VAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 2587789988855-689999988742977999704572
No 374
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=81.72 E-value=4.2 Score=21.57 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 7200128996164420346899998620453312467
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
+--.|+++|||-+. +|-=+|.+|.+.|..||+++..
T Consensus 169 ~~lPk~v~IiGgG~-ig~E~A~~~~~lG~~Vtli~~~ 204 (462)
T PRK06416 169 DEVPKSLVVIGGGY-IGIEFASAYASLGAEVTIIEAL 204 (462)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHHCCEEEEEECC
T ss_conf 54797699988978-7889999999739768997405
No 375
>PRK08017 short chain dehydrogenase; Provisional
Probab=81.64 E-value=1.6 Score=24.54 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 2467653477642235736522443212201047
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.+..|+.|........|=|+++ .|++++.+|..
T Consensus 153 l~~~~~sL~~El~~~gI~V~~V-~PG~v~T~~~~ 185 (256)
T PRK08017 153 LEAWSDALRMELRHSGIKVSLI-EPGPIRTRFTD 185 (256)
T ss_pred HHHHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHC
T ss_conf 9999999999846219289999-72899772010
No 376
>KOG3007 consensus
Probab=81.61 E-value=3.2 Score=22.41 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=49.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCC-CCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 012899616442034689999862045331246765347764223573652244-3212201047662699831111
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGR-PRMVQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~-p~~i~~~~vk~gavvIDvGi~~ 236 (306)
=+.|-|-+|-.---+-+|.-|.+.-.++.+--..-+++...++.+|||++|.-- --.+..+|+|||+-+==||-.+
T Consensus 164 lreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlstePilfgewlkpgthIdlVGsf~ 240 (333)
T KOG3007 164 LREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLSTEPILFGEWLKPGTHIDLVGSFK 240 (333)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEECCCC
T ss_conf 33898642780789999997641466417887730013145546754773035678613223406874076404677
No 377
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=81.56 E-value=2.5 Score=23.19 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=11.4
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 999999852312212588834688711378898606
Q gi|254780506|r 78 LENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSI 113 (306)
Q Consensus 78 l~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I 113 (306)
+.+.+..|. .|. =|++. +|.+-..+.+++.+
T Consensus 45 l~e~v~sl~-~PR--~Iilm--V~aG~~vD~vI~~L 75 (459)
T PRK09287 45 LEEFVASLE-KPR--KILLM--VKAGAPVDAVIEQL 75 (459)
T ss_pred HHHHHHHCC-CCC--EEEEE--CCCCCCHHHHHHHH
T ss_conf 999997367-888--79998--16884299999999
No 378
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=81.35 E-value=2.1 Score=23.69 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=19.8
Q ss_pred HHHHHHCCCCCCCCEEEEEC-----------CCCCCHHHHHHHHHH
Q ss_conf 99998678772001289961-----------644203468999986
Q gi|254780506|r 149 LLIEQFKGCDLSGQHAVVIG-----------RSNLFGKPMGQLLLS 183 (306)
Q Consensus 149 ~ll~~y~~i~l~Gk~vvVvG-----------rs~~VG~Pla~lL~~ 183 (306)
.+-+++ +++.+.-+..|+| ++.+=|+|+..++..
T Consensus 154 ~lae~~-~v~~~~v~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~ 198 (313)
T COG0039 154 FLAEKL-GVSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE 198 (313)
T ss_pred HHHHHH-CCCHHHCEEEEECCCCCCEEEEEEEEEECCEEHHHHHHC
T ss_conf 999985-989667215683167883677413315887888997600
No 379
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=81.09 E-value=2.4 Score=23.30 Aligned_cols=14 Identities=36% Similarity=0.176 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999986
Q gi|254780506|r 276 MLMANTVIAAYRSL 289 (306)
Q Consensus 276 ~L~~N~v~aa~~~~ 289 (306)
....|+++.|--|.
T Consensus 323 s~iDNL~KGAAGQA 336 (350)
T PRK08664 323 VLGHNTVRGAAGAS 336 (350)
T ss_pred EEEHHHHHHHHHHH
T ss_conf 99357567699999
No 380
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.91 E-value=4 Score=21.74 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCC-CEEECCCCCCCCHHHHHHHH-HHHCCCC-CCCEEEE-------ECCCC
Q ss_conf 9759999967986789999999999998397-00002474111226699999-9852312-2125888-------34688
Q gi|254780506|r 32 QVGLAVVLVGNDPASCSYVSAKTRMAKHCGF-HSVQYNFPVDISQIDLENAV-LSLNKDD-SIHGILV-------QLPLP 101 (306)
Q Consensus 32 ~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI-~~~~~~l~~~~se~el~~~I-~~LN~d~-~V~GIlv-------QlPLP 101 (306)
.|.-.+|.+++=-+..+|+-+|. .|. .-+.+---...++..+...| ++||-++ +||+.+| |.|+.
T Consensus 117 ~p~~~vivvsNPvD~~~~v~~k~-----sg~~~~~~i~~~t~LDsaR~r~~la~~l~v~~~~V~~~iI~GeHGds~vp~~ 191 (323)
T cd00704 117 KPTVKVLVVGNPANTNALIALKN-----APNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDL 191 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH-----CCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCEEECC
T ss_conf 99838999578646899999997-----6999824799965279999999999997839789278799987868678630
Q ss_pred CCH
Q ss_conf 711
Q gi|254780506|r 102 STV 104 (306)
Q Consensus 102 ~~i 104 (306)
+|.
T Consensus 192 s~a 194 (323)
T cd00704 192 SNA 194 (323)
T ss_pred CCC
T ss_conf 108
No 381
>PRK07832 short chain dehydrogenase; Provisional
Probab=80.87 E-value=1.7 Score=24.28 Aligned_cols=58 Identities=22% Similarity=0.211 Sum_probs=33.1
Q ss_pred EEEEEC-CCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 289961-644203468-999986204533124676534776422357365224432122010476
Q gi|254780506|r 163 HAVVIG-RSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 163 ~vvVvG-rs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+++.++ -+-.+|.|- +.+-..+.|- +..|+.|........|=|+++ .|++++.+|...
T Consensus 132 ~IVnisS~ag~~~~p~~~~Y~ASK~av----~g~~esL~~El~~~gI~V~~v-~PG~v~T~~~~~ 191 (272)
T PRK07832 132 HLVNVSSAAGLVGLPWHAAYSASKYGL----RGLSEVLRFDLARHGIGVSVV-VPGAVKTPLVNT 191 (272)
T ss_pred EEEEECCHHHCCCCCCCCHHHHHHHHH----HHHHHHHHHHHCCCCCEEEEE-ECCCCCCCCCCC
T ss_conf 899975777556899980299999999----999999999852109789999-748898887888
No 382
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=80.80 E-value=2.4 Score=23.23 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999999999999983699975999996798678999999999999839700002474111226699999985231
Q gi|254780506|r 9 VVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKD 88 (306)
Q Consensus 9 ~iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d 88 (306)
.+++++|.+-++-|+.|++. |+. .+++-|||+ +.-++.|+++||++.-.-+|++ =.+.|++|-+.
T Consensus 367 ~~~D~lkp~a~~~i~~Lk~~-Gi~---~~mLtGDN~------~~A~a~A~~lGI~v~Aev~P~~-----K~a~ik~lq~~ 431 (545)
T TIGR01511 367 ALADQLKPEAKEVIQALKRR-GIE---PVMLTGDNR------KTAKAVAKELGINVRAEVLPDD-----KAALIKELQEK 431 (545)
T ss_pred EECCCCCHHHHHHHHHHHHC-CCE---EEEEECCCH------HHHHHHHHHHCCEEEECCCHHH-----HHHHHHHHHCC
T ss_conf 66474688689999999875-987---999866987------9999999972833331788076-----89999998538
No 383
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=80.73 E-value=5.1 Score=20.98 Aligned_cols=11 Identities=9% Similarity=0.471 Sum_probs=5.1
Q ss_pred CCHHHHHHHHH
Q ss_conf 66799999999
Q gi|254780506|r 142 CTPAGAILLIE 152 (306)
Q Consensus 142 cTp~av~~ll~ 152 (306)
||+.+.+.-|.
T Consensus 132 C~tt~l~laL~ 142 (347)
T PRK06728 132 CSALQMVTALQ 142 (347)
T ss_pred HHHHHHHHHHH
T ss_conf 08889999999
No 384
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=80.68 E-value=1.9 Score=23.95 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=21.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHHC-CCCCCCEEE
Q ss_conf 9996798678999999999999839700002474111-2266999999852-312212588
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSLN-KDDSIHGIL 95 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~LN-~d~~V~GIl 95 (306)
+++.+-++....-+.. ..++.| .+..+ ..|+ +++++.+.+++.- .-..+|.++
T Consensus 27 V~i~~r~~~~l~~~~~---~l~~~g-~~~~~--~~Dv~~~~~v~~~v~~~~~~~G~iD~LV 81 (259)
T PRK08340 27 VVISSRNEENLEKALK---ELKELG-EVYAI--KADLSDKDDLKNLVKEAWELLGGIDALV 81 (259)
T ss_pred EEEEECCHHHHHHHHH---HHHHCC-CEEEE--EEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999799899999999---987418-87999--9636998999999999999859988899
No 385
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=80.66 E-value=1.7 Score=24.30 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC
Q ss_conf 2001289961644203468999986204533124
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~h 192 (306)
..||+|.|||-+. =|---|.+|.+.|.+||+.-
T Consensus 149 rTGkkVAVVGSGP-AGLAaA~qLnrAGH~VTVfE 181 (517)
T TIGR01317 149 RTGKKVAVVGSGP-AGLAAADQLNRAGHTVTVFE 181 (517)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEE
T ss_conf 4786689975675-79999999853588389974
No 386
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.60 E-value=3.7 Score=21.93 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 766799999999867877200128996164
Q gi|254780506|r 141 PCTPAGAILLIEQFKGCDLSGQHAVVIGRS 170 (306)
Q Consensus 141 PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs 170 (306)
+.|...++..+..|. ...-||.+++++..
T Consensus 157 ~~Ts~~~~~~~~~~~-~~~l~k~~v~~~d~ 185 (284)
T PRK07819 157 LVTSEATVARAEEFA-TEVLGKQVVRCQDR 185 (284)
T ss_pred CCCCHHHHHHHHHHH-HHHCCCCCEEECCC
T ss_conf 999899999999999-98269663686677
No 387
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=80.59 E-value=5.2 Score=20.95 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 7200128996164420346899998620453312467
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
+--.|+++|||-+. +|-=+|.+|.+-|..||+++..
T Consensus 172 ~~~Pk~v~ViGgG~-ig~E~A~~~~~lG~~Vtii~~~ 207 (464)
T PRK05976 172 ETLPKSLVVVGGGY-IGLEWGSMLRKFGVEVTVVEAA 207 (464)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEEC
T ss_conf 54895599989968-9999999999539869999853
No 388
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=80.55 E-value=4.8 Score=21.15 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCC-------------------CCCHHH---HHH--H-CCEEEEE
Q ss_conf 720012899616442034689999862045-3312467-------------------653477---642--2-3573652
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSK-------------------TKNLPE---ICR--T-ADILVVA 211 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~-------------------T~~l~~---~~~--~-ADivIsA 211 (306)
...|++++|+|-+. +|.=..+++...||. |++.... ..+..+ .+. . .|+++-+
T Consensus 158 ~~~g~~vlV~GaG~-vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~lGAd~~i~~~~~~~~~~~~~~~~~~~d~vvid~ 236 (347)
T PRK10309 158 GCEGKNVIIIGAGT-IGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEEC
T ss_conf 88898699989983-89999999998599769999289999999997299899868877999999986299888699979
Q ss_pred CCCCCCCC--CCCCCCCCEEEEEEEE
Q ss_conf 24432122--0104766269983111
Q gi|254780506|r 212 VGRPRMVQ--VDWIKTGSLVIDVGIN 235 (306)
Q Consensus 212 vG~p~~i~--~~~vk~gavvIDvGi~ 235 (306)
+|.+..+. -++++++..++=+|.-
T Consensus 237 ~G~~~~~~~a~~~~~~~G~iv~~G~~ 262 (347)
T PRK10309 237 AGVPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 99989999999961897499998057
No 389
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=80.33 E-value=3.9 Score=21.80 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=10.5
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9967986789999999999998397000
Q gi|254780506|r 38 VLVGNDPASCSYVSAKTRMAKHCGFHSV 65 (306)
Q Consensus 38 IlvGddpaS~~Yv~~K~K~a~~lGI~~~ 65 (306)
|.||-++.+ ++ +.|++-|++..
T Consensus 42 V~vglr~g~-s~-----~~A~~~Gf~v~ 63 (335)
T PRK13403 42 VVVGVRPGK-SF-----EVAKADGFEVM 63 (335)
T ss_pred EEEEECCCC-CH-----HHHHHCCCEEC
T ss_conf 799979985-69-----99998799316
No 390
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=80.12 E-value=5.1 Score=21.00 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHHHHC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCC
Q ss_conf 999999867--87720012899616442034689999862045-33124676
Q gi|254780506|r 147 AILLIEQFK--GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKT 195 (306)
Q Consensus 147 v~~ll~~y~--~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T 195 (306)
.+.+|+... ...-.||+|+|||-++ ++.=.|.-..+.||. |+++-++|
T Consensus 307 avdfL~~v~~g~~~~~GkkVvVIGGGN-tAmD~ARTA~RlGA~~VtivyRRt 357 (652)
T PRK12814 307 GIDFLRNVALGTALHPGKKVVVIGGGN-TAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEECCCC-HHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 899999852698666788524866881-389999999874897589983376
No 391
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=80.10 E-value=2.1 Score=23.71 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=40.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC-----CHHHHHHHC---CEEEEECCCCCCCCCCC
Q ss_conf 720012899616442034689999862045331246765-----347764223---57365224432122010
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK-----NLPEICRTA---DILVVAVGRPRMVQVDW 222 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~-----~l~~~~~~A---DivIsAvG~p~~i~~~~ 222 (306)
=++||.|+|||.++. =-==|.+|.+-..+||+.|+|-+ =+.+.+++. .|.+-==-.+.=|..|.
T Consensus 148 ffk~K~V~VvGGGds-A~eEA~yL~~~a~kV~lvHRRd~fRA~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~ 219 (321)
T TIGR01292 148 FFKNKEVAVVGGGDS-ALEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPEGKIEFLWNSTVEEIVGDN 219 (321)
T ss_pred HHCCCEEEEECCCCH-HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEECCC
T ss_conf 205988999879824-888889998538767999779863632899989983789878996486899996178
No 392
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=80.00 E-value=2.2 Score=23.50 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=21.2
Q ss_pred HHCCEEEEECCC---CCCCC--CCCCCCCCEEEEEE
Q ss_conf 223573652244---32122--01047662699831
Q gi|254780506|r 203 RTADILVVAVGR---PRMVQ--VDWIKTGSLVIDVG 233 (306)
Q Consensus 203 ~~ADivIsAvG~---p~~i~--~~~vk~gavvIDvG 233 (306)
...|++++|++. ..+.+ ...++.|..|||..
T Consensus 64 ~~~Dvvf~a~p~~~s~~~~~~~~~~~~~g~~VIDlS 99 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLS 99 (122)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 179999993882788999998898875698798684
No 393
>PRK12743 acetoin dehydrogenase; Provisional
Probab=79.89 E-value=2.5 Score=23.12 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 01289961644203468-999986204533124676534776422357365224432122010
Q gi|254780506|r 161 GQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 161 Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
|+=|.+-.-+...|.|- +.+-..|.|- +..|+.+......-.|-|-++- |+++..+|
T Consensus 133 G~IVnisS~~~~~~~~~~~~Y~asKaal----~~ltk~lA~ela~~gIrVN~Va-PG~i~T~~ 190 (253)
T PRK12743 133 GRIINITSVHEHTPLPDASAYTAAKHAL----GGLTKAMALELVEHKILVNAVA-PGAIATPM 190 (253)
T ss_pred CEEEEEEEHHHCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHCEEEEEEE-ECCCCCCC
T ss_conf 6389996366557889858999999999----9999999999702192999996-48898776
No 394
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=79.67 E-value=5.5 Score=20.75 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=27.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECC---CCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9999967986789999999999998397000024---74111226699999985231221258
Q gi|254780506|r 35 LAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYN---FPVDISQIDLENAVLSLNKDDSIHGI 94 (306)
Q Consensus 35 LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~---l~~~~se~el~~~I~~LN~d~~V~GI 94 (306)
.++++.-++|+-..=++.-+...++.|..-.-+. ...+-+.+.+-...++|-++ .+|=|
T Consensus 2 i~i~q~~~h~~ld~~~~g~~~~L~~~G~~~~n~~~~~~na~gd~~~~~~ia~~l~~~-~~Dli 63 (292)
T pfam04392 2 IAIAQFVEHPSLDAIVDGIQEALKDFGYEPKNVLIKVKNAEGDPSKAAQIARQLVTD-KNDLI 63 (292)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHC-CCCEE
T ss_conf 379984167418999999999999759976565999950789999999999999737-99899
No 395
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=79.62 E-value=3.9 Score=21.77 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=40.5
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCEEEC------------CCCCCCCHHHHHH-HHHHHCCCCCCCEEEEECCCCCCH
Q ss_conf 996798678999999999999839700002------------4741112266999-999852312212588834688711
Q gi|254780506|r 38 VLVGNDPASCSYVSAKTRMAKHCGFHSVQY------------NFPVDISQIDLEN-AVLSLNKDDSIHGILVQLPLPSTV 104 (306)
Q Consensus 38 IlvGddpaS~~Yv~~K~K~a~~lGI~~~~~------------~l~~~~se~el~~-~I~~LN~d~~V~GIlvQlPLP~~i 104 (306)
|.+|-++.|.++ +.|++-|+++..+ -+|+. .|.++.. .|+-+=.+-.. |. +..++
T Consensus 44 ViiGlr~g~~s~-----~kA~~dGf~V~~v~ea~k~ADvim~L~PDe-~q~~vy~~~I~p~Lk~G~a---L~---FaHGf 111 (338)
T COG0059 44 VIIGLRKGSSSW-----KKAKEDGFKVYTVEEAAKRADVVMILLPDE-QQKEVYEKEIAPNLKEGAA---LG---FAHGF 111 (338)
T ss_pred EEEEECCCCHHH-----HHHHHCCCEEECHHHHHHCCCEEEEECCHH-HHHHHHHHHHHHHHCCCCE---EE---ECCCC
T ss_conf 799856887248-----999966977513999852279999818654-6789999874345227866---77---62655
Q ss_pred HHHHHHHHCCCCCCHHHC--CHHHHHHHHHCCCC
Q ss_conf 378898606874351321--55338887304778
Q gi|254780506|r 105 SEQSIIQSIVPEKDVDGL--HVVNAGKVMIGDFT 136 (306)
Q Consensus 105 d~~~i~~~I~p~KDVDGl--~~~N~g~l~~~~~~ 136 (306)
|. ....|.|-||||=+ -|.--|.+.+..+.
T Consensus 112 Ni--hf~~i~ppkdvdV~MVAPKgPG~~VR~~y~ 143 (338)
T COG0059 112 NI--HFGLIVPPKDVDVIMVAPKGPGHLVRREYK 143 (338)
T ss_pred CE--ECCCCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 31--133033776671899838999678999987
No 396
>PRK13984 putative oxidoreductase; Provisional
Probab=79.58 E-value=5.1 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=16.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2001289961644203468999986
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLS 183 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~ 183 (306)
-.||+|+|||-++ ++.=.|.-..+
T Consensus 416 ~~gK~VVVIGGGn-TAmDcaRTA~R 439 (604)
T PRK13984 416 KIPRSLVVIGGGN-VAMDIARSMAR 439 (604)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHH
T ss_conf 6697589989818-89999999987
No 397
>PRK11749 putative oxidoreductase; Provisional
Probab=79.36 E-value=4.7 Score=21.26 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=35.2
Q ss_pred HHHHHHHHC--------CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCCC
Q ss_conf 999999867--------87720012899616442034689999862045-331246765
Q gi|254780506|r 147 AILLIEQFK--------GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKTK 196 (306)
Q Consensus 147 v~~ll~~y~--------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T~ 196 (306)
.+++|..+. .....||+|+|||-++ ++.=.|..+.+.||. |++.++++.
T Consensus 254 a~dfL~~~~~~~~~~~~~~~~~Gk~VvVIGgGn-vA~D~Arta~r~GA~~V~vv~rr~~ 311 (460)
T PRK11749 254 AVDFLTRVNQDAVADDDTLIAVGKRVVVIGGGN-TAMDAARTAKRLGAESVTIVYRRGR 311 (460)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 899999974365444577554487489989846-6999899999828984633000752
No 398
>PRK07454 short chain dehydrogenase; Provisional
Probab=79.30 E-value=2.1 Score=23.74 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=67.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHH---CCCCCC----CEEEEECCCCCCHHHH
Q ss_conf 999967986789999999999998397000024741112-26699999985---231221----2588834688711378
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLSL---NKDDSI----HGILVQLPLPSTVSEQ 107 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~L---N~d~~V----~GIlvQlPLP~~id~~ 107 (306)
.+++++-+.+.. +...+.+++.|.++..+.. |++ ++++.+.+++. ....++ -|+...-|+ .
T Consensus 32 ~V~l~~R~~~~l---~~~~~e~~~~g~~~~~~~~--Dvt~~~~v~~~~~~~~~~~G~iDiLVnNAG~~~~~~~----~-- 100 (241)
T PRK07454 32 DLALVARSQDAL---EALAEELRSTGVKVAAYSI--DLSNPEAIAPGIAELLEQFGCPSVLINNAGAAYTGPL----L-- 100 (241)
T ss_pred EEEEEECCHHHH---HHHHHHHHHCCCCEEEEEE--ECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH----H--
T ss_conf 899998999999---9999999965992899995--1899999999999999975998899988988999992----6--
Q ss_pred HHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHH-HHHHHHHC
Q ss_conf 8986068743513215533888730477887567667999999998678772001289961-644203468-99998620
Q gi|254780506|r 108 SIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPM-GQLLLSRN 185 (306)
Q Consensus 108 ~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pl-a~lL~~~~ 185 (306)
-++ ..|.|-.-..|+--. | =|| .+++..++.. + .| +++.++ -+-..+.|- +.+-..|.
T Consensus 101 ----~~~-~e~~~~~~~vNl~g~--------~-~~~-~~~lp~M~~~-~---~G-~IinisS~ag~~~~~~~~~Y~aSK~ 160 (241)
T PRK07454 101 ----EMP-LSDWQWVIQLNLTSV--------F-QCC-SAVLPGMRAR-G---GG-LIINVSSHAARNAFPQWGAYCVSKA 160 (241)
T ss_pred ----HCC-HHHHHHHHHHHHHHH--------H-HHH-HHHHHHHHHC-C---CC-EEEEEECHHHCCCCCCCHHHHHHHH
T ss_conf ----699-999999999986999--------9-999-9999999973-9---98-9999835654477899757999999
Q ss_pred CCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 4533124676534776422357365224432122010476
Q gi|254780506|r 186 ATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 186 atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
| .+..|+.|........|=|.++ .|+++..+|...
T Consensus 161 a----l~~lt~~la~E~~~~gIrVn~V-~PG~v~T~m~~~ 195 (241)
T PRK07454 161 A----LAAFTKCLAEEERSHGIRVCTL-TLGAVNTPLWDS 195 (241)
T ss_pred H----HHHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCCC
T ss_conf 9----9999999999838459389999-738898898886
No 399
>PRK05993 short chain dehydrogenase; Provisional
Probab=79.28 E-value=2 Score=23.74 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=33.3
Q ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 001289961644203468-9999862045331246765347764223573652244321220104
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.|.-|.|-.-+..+|.|. +.+-..+.|- +..|+.|....+...|=|+++ .|++++.++.
T Consensus 127 ~G~IVnisSi~g~~~~p~~~~Y~aSK~Av----~~~~~sLr~El~~~gI~V~~i-~PG~v~T~~~ 186 (277)
T PRK05993 127 HGRIVQCSSILGLVPMKYRGAYNASKFAI----EGLSDTLRMELQGSGIHVSLI-EPGPIATRFR 186 (277)
T ss_pred CCEEEEECCHHHCCCCCCCCHHHHHHHHH----HHHHHHHHHHHCCCCCEEEEE-ECCCCCCCCC
T ss_conf 83899988844488899983899999999----999999999856328689999-6488878753
No 400
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.22 E-value=4.3 Score=21.50 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=10.7
Q ss_pred CHHHHHHHHHCCCCCCHHHCCHHHH
Q ss_conf 1137889860687435132155338
Q gi|254780506|r 103 TVSEQSIIQSIVPEKDVDGLHVVNA 127 (306)
Q Consensus 103 ~id~~~i~~~I~p~KDVDGl~~~N~ 127 (306)
.+..+++.....-..-+=|+|++|=
T Consensus 121 sl~is~la~~~~~p~R~ig~HffnP 145 (292)
T PRK07530 121 SISITRLASSTDRPERFIGIHFMNP 145 (292)
T ss_pred CCCCHHHHHHCCCHHHHCCCCCCCC
T ss_conf 8750566664378476436321687
No 401
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.13 E-value=3.1 Score=22.52 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 765347764223573652244321220104
Q gi|254780506|r 194 KTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 194 ~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.|+.+......--|-|-++ .|+++..+|.
T Consensus 173 ltr~lA~ela~~gIrVN~I-aPG~i~T~~~ 201 (259)
T PRK12745 173 AAQLFALRLAEEGIGVYEV-RPGLIKTDMT 201 (259)
T ss_pred HHHHHHHHHHHCCEEEEEE-EECCCCCCCC
T ss_conf 9999999985549399999-8615888763
No 402
>PRK08267 short chain dehydrogenase; Provisional
Probab=79.07 E-value=2.1 Score=23.66 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEC-CCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 999999998678772001289961-6442034689-99986204533124676534776422357365224432122010
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIG-RSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvG-rs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
.+++..++.- .|-+++-++ -+-..|.|-. .+-..+.|- +..|+.|......-.|=|.++ .|++++.+|
T Consensus 117 ~~~lp~m~~~-----~~g~IvnisS~~g~~~~p~~~~Y~aSK~av----~~lt~sla~El~~~gIrVn~v-~PG~v~T~m 186 (258)
T PRK08267 117 YAALPYLKAT-----PGARVINTSSASAIYGQPQLAVYSATKFAV----RGLTEALDLEWRRHGIRVADV-MPLFVDTPM 186 (258)
T ss_pred HHHHHHHHHC-----CCCEEEEEECHHHCCCCCCCCHHHHHHHHH----HHHHHHHHHHHCCCCCEEEEE-EECCCCCCC
T ss_conf 9999999977-----992799990654467999986699999999----999999999843019189999-718898766
Q ss_pred CCCC
Q ss_conf 4766
Q gi|254780506|r 223 IKTG 226 (306)
Q Consensus 223 vk~g 226 (306)
+...
T Consensus 187 ~~~~ 190 (258)
T PRK08267 187 LGSN 190 (258)
T ss_pred CCCC
T ss_conf 8988
No 403
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=78.88 E-value=5 Score=21.02 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=22.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-EE
Q ss_conf 7720012899616442034689999862045-33
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT-VT 189 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vt 189 (306)
++..||+|+|||-++ ++.=.|....+.||. |+
T Consensus 277 ~~~~Gk~VvVIGGGn-tAmD~arta~R~GA~~V~ 309 (472)
T PRK12810 277 ILAKGKHVVVIGGGD-TGMDCVGTSIRQGAKSVT 309 (472)
T ss_pred CCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEE
T ss_conf 322476589989866-899999999973896899
No 404
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=78.68 E-value=5.7 Score=20.66 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCC
Q ss_conf 72001289961644203468999986204-533124676
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKT 195 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T 195 (306)
++.||+|+|||-++ ++.=.+.-..+.|| .||+..+++
T Consensus 448 ~~~GK~VVVIGGGn-tAmDcaRTA~RlGA~~VtivYRR~ 485 (639)
T PRK12809 448 DVEGKRVVVLGGGD-TTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 55677799989982-189999999983998775215477
No 405
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.48 E-value=4.6 Score=21.28 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 4203468999986
Q gi|254780506|r 171 NLFGKPMGQLLLS 183 (306)
Q Consensus 171 ~~VG~Pla~lL~~ 183 (306)
.+-|+|+..++..
T Consensus 197 ~V~G~pl~~~~~d 209 (322)
T cd01338 197 TIGGKPAAEVIND 209 (322)
T ss_pred EECCEEHHHHHCC
T ss_conf 5988998995232
No 406
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=78.47 E-value=3.2 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=18.0
Q ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 999759999967986789999999999
Q gi|254780506|r 30 GVQVGLAVVLVGNDPASCSYVSAKTRM 56 (306)
Q Consensus 30 g~~P~LavIlvGddpaS~~Yv~~K~K~ 56 (306)
.++-....++...+.+-..|.+...+.
T Consensus 25 ~f~~~~~~~~AS~rSaG~~~~~f~~~~ 51 (334)
T COG0136 25 HFPFEELVLLASARSAGKKYIEFGGKS 51 (334)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 998405788852311577160106750
No 407
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=78.20 E-value=2.7 Score=22.88 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=30.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCC
Q ss_conf 72001289961644203468999986204-533124676
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKT 195 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T 195 (306)
++.||+++|||-+. +|.-+|..+...+| .|++.|+++
T Consensus 168 ~~~gk~vvVvGgG~-~a~e~A~~~~~~Ga~~v~l~~r~~ 205 (350)
T PRK12770 168 PVEGKKVVVVGAGL-TAVDAALEAKLLGAEKVYMAYRRT 205 (350)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 55898899989864-567999999975996899996665
No 408
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=78.15 E-value=5.7 Score=20.66 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=9.4
Q ss_pred HHHHHHHHCCCCEEECC
Q ss_conf 99999998397000024
Q gi|254780506|r 52 AKTRMAKHCGFHSVQYN 68 (306)
Q Consensus 52 ~K~K~a~~lGI~~~~~~ 68 (306)
...++-+++|.......
T Consensus 100 ~i~~~v~~~Gy~~~~~~ 116 (739)
T PRK11033 100 QVESAVQKAGFSLRDEQ 116 (739)
T ss_pred HHHHHHHHCCCCCCCCC
T ss_conf 99999997499867788
No 409
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188 This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=78.00 E-value=6.1 Score=20.44 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=56.3
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHH-HHHHHCCE
Q ss_conf 730477887567667999999998678-7720012899616442034689999862045331246765347-76422357
Q gi|254780506|r 130 VMIGDFTTGLVPCTPAGAILLIEQFKG-CDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLP-EICRTADI 207 (306)
Q Consensus 130 l~~~~~~~~~~PcTp~av~~ll~~y~~-i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~-~~~~~ADi 207 (306)
|.+| .-+| ||+=|+.-|++. | +.-+--.|+|=|-+-=||.=--.||.+.|.+|+-.--|. +-+ ++.++
T Consensus 123 M~~G--TAGf---TAaL~V~aLe~~-Gl~~P~~GpVlVTGAtGGVGS~Av~~L~~lGY~V~A~tGk~-~~~~~yL~~--- 192 (330)
T TIGR02823 123 MALG--TAGF---TAALSVMALERN-GLLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKA-EEEVEYLKE--- 192 (330)
T ss_pred HHHH--HHHH---HHHHHHHHHHHC-CCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHH---
T ss_conf 9860--0778---999999999972-68888888788706778778999999983797699973783-778899986---
Q ss_pred EEEECCCCCCCCCCCCC
Q ss_conf 36522443212201047
Q gi|254780506|r 208 LVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 208 vIsAvG~p~~i~~~~vk 224 (306)
.|-...|.++-+.
T Consensus 193 ----LGA~evi~R~~l~ 205 (330)
T TIGR02823 193 ----LGASEVIDREELS 205 (330)
T ss_pred ----CCCCCCCCHHHCC
T ss_conf ----5811057711227
No 410
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=77.79 E-value=2.5 Score=23.10 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC
Q ss_conf 8772001289961644203468999986204533124
Q gi|254780506|r 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAH 192 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~h 192 (306)
..+++||+|+|||.+. -|--++.-|...++.||+.-
T Consensus 170 ~~~~~GKrV~VIG~Ga-SA~di~~~l~~~ga~vt~~q 205 (443)
T COG2072 170 PEDLRGKRVLVIGAGA-SAVDIAPELAEVGASVTLSQ 205 (443)
T ss_pred HHHCCCCEEEEECCCC-CHHHHHHHHHHCCCEEEEEE
T ss_conf 1342788799989870-39999999973067178985
No 411
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=77.74 E-value=4 Score=21.69 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=9.9
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 8698686899999999
Q gi|254780506|r 265 VPGGVGPMTIAMLMAN 280 (306)
Q Consensus 265 VPGGVGp~Tva~L~~N 280 (306)
--.|.|.=++..|+..
T Consensus 449 dI~GLG~k~i~~L~e~ 464 (667)
T COG0272 449 DIDGLGEKIIEQLFEK 464 (667)
T ss_pred CCCCCCHHHHHHHHHC
T ss_conf 7777679999999973
No 412
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.53 E-value=5 Score=21.03 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=56.9
Q ss_pred CCCCCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHC-CCCCCCCCCCHHH
Q ss_conf 741112-26699999985231221258883468871137889860687435132155338887304-7788756766799
Q gi|254780506|r 69 FPVDIS-QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIG-DFTTGLVPCTPAG 146 (306)
Q Consensus 69 l~~~~s-e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~-~~~~~~~PcTp~a 146 (306)
.+|+.. .+++.+.|+++-.+. -|+-- =-+.+..+.+.+...--..+=|+|++|=-.++.- +-- .-+.|...
T Consensus 86 v~E~l~iK~~lf~~le~~~~~~---~IlAS--NTSsl~is~ia~~~~~p~R~ig~HffnP~~~m~LVEIv--~g~~Ts~~ 158 (310)
T PRK06130 86 VPEKLDLKRDIFARLDTLCDPQ---TIFAT--NTSGLSINAIAQAVTRRERFVGTHFFTPADVIPLVEVV--RNDDTSPQ 158 (310)
T ss_pred CCCCHHHHHHHHHHHHCCCCCC---CEEEE--CCCCCCCHHHHHHCCCHHHEEEEEECCCCCCCCCEEEC--CCCCCCHH
T ss_conf 8177899999999986068988---38996--48877606788863898781554443776776665223--78989899
Q ss_pred HHHHHHHHCCCCCCCCEEEEECC---CCCCHHHHHHHHH
Q ss_conf 99999986787720012899616---4420346899998
Q gi|254780506|r 147 AILLIEQFKGCDLSGQHAVVIGR---SNLFGKPMGQLLL 182 (306)
Q Consensus 147 v~~ll~~y~~i~l~Gk~vvVvGr---s~~VG~Pla~lL~ 182 (306)
++..+.++. .--||.-+++++ +-++.|=++.++.
T Consensus 159 ~~~~~~~~~--~~~gk~pvvv~kd~pGFi~NRl~~~~~~ 195 (310)
T PRK06130 159 TVATVMAML--RSIGKRPVLVKKDIPGFIANRIQHALAR 195 (310)
T ss_pred HHHHHHHHH--HHCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 999999999--9719879998866588018888999999
No 413
>KOG0023 consensus
Probab=77.20 E-value=6.2 Score=20.42 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=92.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEEC-----CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 99996798678999999999999839700002-----4741112266999999852312212588834688711378898
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQY-----NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSII 110 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~-----~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~ 110 (306)
.++.+|.+- .+-|...++|+.+..- ++=++-.|.-.-+.+-.+| ....||-+-|==+.+++-.++.+
T Consensus 76 ~VvkvGs~V-------~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~-g~~~DGt~~~ggf~~~~~v~~~~ 147 (360)
T KOG0023 76 VVVKVGSNV-------TGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYN-GVYHDGTITQGGFQEYAVVDEVF 147 (360)
T ss_pred EEEEECCCC-------CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECC-CCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 999977886-------5441057664557724415760102587335874267434-41227878556632048982046
Q ss_pred HH-CCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 60-68743513215533888730477887567667999999998678772001289961644203468999986204533
Q gi|254780506|r 111 QS-IVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVT 189 (306)
Q Consensus 111 ~~-I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVt 189 (306)
-. |+..-+.+. -+.+=|.-.-+..=|+++ |.. .|+++.|+|-+. +|-=-.++-...|+.||
T Consensus 148 a~kIP~~~pl~~---------------aAPlLCaGITvYspLk~~-g~~-pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~ 209 (360)
T KOG0023 148 AIKIPENLPLAS---------------AAPLLCAGITVYSPLKRS-GLG-PGKWVGIVGLGG-LGHMAVQYAKAMGMRVT 209 (360)
T ss_pred EEECCCCCCHHH---------------CCCHHHCCEEEEEHHHHC-CCC-CCCEEEEECCCC-CCHHHHHHHHHHCCEEE
T ss_conf 898899997100---------------146221532773026773-999-986898855764-01689999987086799
Q ss_pred ECCCCCCCHHHHHHH--CCEEEEECCCCC------------------C------CCCCCCCCCCEEEEEEEEE
Q ss_conf 124676534776422--357365224432------------------1------2201047662699831111
Q gi|254780506|r 190 MAHSKTKNLPEICRT--ADILVVAVGRPR------------------M------VQVDWIKTGSLVIDVGINR 236 (306)
Q Consensus 190 i~hs~T~~l~~~~~~--ADivIsAvG~p~------------------~------i~~~~vk~gavvIDvGi~~ 236 (306)
...+-++.-++.+++ ||.+|.+..-|. | --.+++|.+-.+|=||.-.
T Consensus 210 vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023 210 VISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred EEECCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf 9927853489999854962158842787899999875267502321023244388887610397899983667
No 414
>PRK05693 short chain dehydrogenase; Provisional
Probab=76.90 E-value=3.8 Score=21.92 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH-HHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999867877200128996164420346899998-62045331246765347764223573652244321220104
Q gi|254780506|r 145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLL-SRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~-~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
.+++-+|++ + .|.=|-|---+..++.|....-. .+.| .++.|+.|....+.-.|=|+.+ .|+.+..++.
T Consensus 112 ~~~lP~m~~--~---~G~IVnisS~ag~~~~p~~~~Y~aSK~A----l~~~s~sLr~El~~~gI~V~~v-~PG~i~T~~~ 181 (274)
T PRK05693 112 RALFPLLRR--S---RGLVVNIGSVSGVLVTPFAGAYCASKAA----VHALSDALRLELAPFGVQVMEV-QPGAIASQFA 181 (274)
T ss_pred HHHHHHHHH--C---CCEEEEEECCHHCCCCCCCHHHHHHHHH----HHHHHHHHHHHHCCCCCEEEEE-ECCCCCCCHH
T ss_conf 999999975--8---9679998140532689997379999999----9999999999842028789999-7188878644
Q ss_pred C
Q ss_conf 7
Q gi|254780506|r 224 K 224 (306)
Q Consensus 224 k 224 (306)
+
T Consensus 182 ~ 182 (274)
T PRK05693 182 S 182 (274)
T ss_pred H
T ss_conf 6
No 415
>PRK08177 short chain dehydrogenase; Provisional
Probab=76.74 E-value=2.6 Score=23.08 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=27.1
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 999862045331246765347764223573652244321220104766
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~g 226 (306)
.+-..|.|- +..|+.+.....+-.|-|.++ .|+++..+|-.+.
T Consensus 146 ~Y~aSKaAl----~~lt~sla~El~~~gI~Vn~i-~PG~v~T~M~~~~ 188 (225)
T PRK08177 146 LYKASKAAL----NSMTRSFVAELGEPDLTVLSM-HPGWVKTDMGGDA 188 (225)
T ss_pred HHHHHHHHH----HHHHHHHHHHHCCCCEEEEEE-EECCCCCCCCCCC
T ss_conf 779999999----999999999846578299999-7188816999999
No 416
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=76.47 E-value=6.1 Score=20.43 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=5.4
Q ss_pred HHHHCCCCCCCC
Q ss_conf 999868898555
Q gi|254780506|r 285 AYRSLGMKSPKF 296 (306)
Q Consensus 285 a~~~~~~~~~~~ 296 (306)
.++.+|..++.|
T Consensus 261 ~~~~lg~~p~~~ 272 (284)
T pfam04321 261 LEATFGIPLPDW 272 (284)
T ss_pred HHHHHCCCCCCH
T ss_conf 999768799989
No 417
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=76.39 E-value=2.5 Score=23.13 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=29.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 7200128996164420346899998620453312467
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
+++||+|+|||.|+ -|.-+|.=|....+.|++++++
T Consensus 180 ~f~GKrVlVVG~Gn-Sg~DIA~els~~a~~V~ls~R~ 215 (532)
T pfam00743 180 GFQGKRVLVIGLGN-SGGDIAVELSRTAAQVFLSTRT 215 (532)
T ss_pred HCCCCEEEEECCCC-CCCHHHHHHHHHCCEEEEEEEC
T ss_conf 85997499978889-8410599998527868999706
No 418
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.10 E-value=6.3 Score=20.37 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH-HHHHHHHHHHCCCC
Q ss_conf 99999999999999998369997599999679867899999999999983970000247411122-66999999852312
Q gi|254780506|r 11 ASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQ-IDLENAVLSLNKDD 89 (306)
Q Consensus 11 A~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se-~el~~~I~~LN~d~ 89 (306)
.+..++.+++....+.. .+..| +..++...|......+++ +.++.+-..||+..- .++.+.|+++-..+
T Consensus 43 ~~~~~~~i~~~~~~l~~-~~~~~-------~~~~~~l~~~~~l~~av~--~aD~ViEavpE~l~lK~~lf~~ld~~~~~~ 112 (321)
T PRK07066 43 EAALRANVANAWPALER-QGLAP-------GASPARLRFVATIEACVA--DADFIQESAPEREALKLELHERISRAAKPD 112 (321)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCC-------HHHHHHHHCCCCHHHHHC--CCCEEEECCEECHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999986-68996-------316965014688899863--599899877665999999999999767988
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 21258883468871137889860687435132155338887304-77887567667999999998678772001289961
Q gi|254780506|r 90 SIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIG-DFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIG 168 (306)
Q Consensus 90 ~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~-~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvG 168 (306)
.||-- =-+.+..+++......-.-+=|.||+|=-.++-- +-- .-+-|...++.....++ .--||..+++.
T Consensus 113 ---aIiAS--nTS~l~is~l~~~~~~peR~i~~HfFNP~~lmPLVEVV--~g~~Ts~~tv~~a~~~~--~~iGk~PV~v~ 183 (321)
T PRK07066 113 ---AIIAS--STSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVL--GGERTAPEAVDAAMGIY--RALGMRPLHVR 183 (321)
T ss_pred ---CEEEE--CCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEC--CCCCCCHHHHHHHHHHH--HHCCCEEEEEE
T ss_conf ---67852--57657899998736997026876105875325424442--89999799999999999--98199788992
Q ss_pred C---CCCCHHHHHHHH
Q ss_conf 6---442034689999
Q gi|254780506|r 169 R---SNLFGKPMGQLL 181 (306)
Q Consensus 169 r---s~~VG~Pla~lL 181 (306)
+ +-++.|=++.|+
T Consensus 184 ke~pGFi~NRL~~al~ 199 (321)
T PRK07066 184 KEVPGFIADRLLEALW 199 (321)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 7784259999999999
No 419
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.76 E-value=6.4 Score=20.30 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=5.5
Q ss_pred CCCCCCHHHC
Q ss_conf 6874351321
Q gi|254780506|r 113 IVPEKDVDGL 122 (306)
Q Consensus 113 I~p~KDVDGl 122 (306)
+...|+|+||
T Consensus 175 v~v~kEi~Gf 184 (489)
T PRK07531 175 VHIAKEIDAH 184 (489)
T ss_pred EEEEEEHHHH
T ss_conf 6970000777
No 420
>KOG1208 consensus
Probab=75.64 E-value=4.7 Score=21.25 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=26.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99999679867899999999999983970000247411122669999998523122125888346887113788
Q gi|254780506|r 35 LAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQS 108 (306)
Q Consensus 35 LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~ 108 (306)
..+|..|.+.+--.+. .+.-.+-|..+....-..+ ..++....|.+ ..+...-...|+.|-.--....
T Consensus 36 ~~~vVTGansGIG~et---a~~La~~Ga~Vv~~~R~~~-~~~~~~~~i~~--~~~~~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208 36 KVALVTGATSGIGFET---ARELALRGAHVVLACRNEE-RGEEAKEQIQK--GKANQKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred CEEEEECCCCCHHHHH---HHHHHHCCCEEEEEECCHH-HHHHHHHHHHH--CCCCCCEEEEECCCCCHHHHHH
T ss_conf 7799958988437999---9999957998999847778-89999999971--0877636999879999999999
No 421
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=75.61 E-value=7 Score=20.03 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHHHC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCCC
Q ss_conf 999999867--8772001289961644203468999986204-5331246765
Q gi|254780506|r 147 AILLIEQFK--GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKTK 196 (306)
Q Consensus 147 v~~ll~~y~--~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T~ 196 (306)
.+.+|+.+. .....||+|+|||-++ ++.=.|.-..+.|| .||+.-++|+
T Consensus 251 al~fL~~~~~g~~~~~Gk~VvVIGGGn-tAmD~artA~RlGa~~V~ivyrr~~ 302 (560)
T PRK12771 251 AVSFLRAVEEGEPPKLGKRVVVIGGGN-TAMDAARTARRLGAEEVVIVYRRTR 302 (560)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 599999975689755688689989982-2899999999738976999831442
No 422
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.48 E-value=7.2 Score=19.95 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=30.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCCC
Q ss_conf 772001289961644203468999986204-5331246765
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKTK 196 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T~ 196 (306)
++..||+|+|||-++ ++.=.|.-..+.|| .||+.-+++.
T Consensus 464 i~~~GK~VvVIGGGn-tAmDcaRtA~RlGA~~Vt~vYRR~~ 503 (654)
T PRK12769 464 INTAGLNVVVLGGGD-TAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 555575589988872-4699999999759983660454672
No 423
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.46 E-value=7.2 Score=19.95 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC-------------------CCCH-HHHHHHCCEEEEECCCCCCC
Q ss_conf 200128996164420346899998620453312467-------------------6534-77642235736522443212
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK-------------------TKNL-PEICRTADILVVAVGRPRMV 218 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~-------------------T~~l-~~~~~~ADivIsAvG~p~~i 218 (306)
-.|+.+.|+|-+ =+|-=..++....+|+|+...+. ..+. +..-+.+|++|..++ +.-+
T Consensus 165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~ 242 (339)
T COG1064 165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL 242 (339)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCEEEECCC-HHHH
T ss_conf 999899998774-89999999999869969999578779999998488289976781166776734739999877-4559
Q ss_pred CCC--CCCCCCEEEEEEEEE
Q ss_conf 201--047662699831111
Q gi|254780506|r 219 QVD--WIKTGSLVIDVGINR 236 (306)
Q Consensus 219 ~~~--~vk~gavvIDvGi~~ 236 (306)
... .+|.|-.++=||.-.
T Consensus 243 ~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 243 EPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred HHHHHHHHCCCEEEEECCCC
T ss_conf 99999864297899978888
No 424
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=75.35 E-value=5.7 Score=20.64 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=42.4
Q ss_pred CCEEEEEEECCCHHHHH-H--HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 97599999679867899-9--99999999983970000247411122669999998523122125888346887113788
Q gi|254780506|r 32 QVGLAVVLVGNDPASCS-Y--VSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQS 108 (306)
Q Consensus 32 ~P~LavIlvGddpaS~~-Y--v~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~ 108 (306)
-|..+|-|-++.....+ | -|+++.+- .+||-+-.-=.+++.|.++|.+=.-.= -=||.-.-.|-.-
T Consensus 84 DPAC~V~L~dg~~PI~lWhDp~rW~~ER~---------~qFPGSe~FW~l~~~lf~~nW~F~~Rd--PvLPprn~WDL~Q 152 (499)
T TIGR02733 84 DPACAVYLPDGSEPINLWHDPERWQKERE---------RQFPGSERFWSLCEQLFQSNWRFAQRD--PVLPPRNLWDLLQ 152 (499)
T ss_pred CCCCEEECCCCCCCCCCCCCHHHHHHHHH---------HCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCCCHHHHHH
T ss_conf 88336777879511002358078899986---------408885778999999986053011678--6356777789999
Q ss_pred HHHHCCCCCCHHH
Q ss_conf 9860687435132
Q gi|254780506|r 109 IIQSIVPEKDVDG 121 (306)
Q Consensus 109 i~~~I~p~KDVDG 121 (306)
++.|+-|.-=+=|
T Consensus 153 L~~AlRP~tLlT~ 165 (499)
T TIGR02733 153 LVSALRPDTLLTG 165 (499)
T ss_pred HHHHHCCHHHHHH
T ss_conf 9987463045568
No 425
>PRK10693 response regulator of RpoS; Provisional
Probab=75.29 E-value=5.1 Score=21.02 Aligned_cols=64 Identities=11% Similarity=0.199 Sum_probs=33.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC--CCHHHHHHHH
Q ss_conf 999967986789999999999998397000024741112266999999852312212588834688--7113788986
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLP--STVSEQSIIQ 111 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP--~~id~~~i~~ 111 (306)
-++.|.|++..+...+ +..++.|.++.... +-+|.++.+++. ..|=||.=+=+| .+++.-+-+.
T Consensus 9 kILIVDDd~~~r~~l~---~~L~~~G~~V~~A~-----nG~eAl~~l~~~----~pDLIi~Dl~MP~mdGlell~~lr 74 (337)
T PRK10693 9 QILIVEDEPVFRSLLD---SWFSSLGATTVLAA-----DGVDALELLGGF----TPDLMICDIAMPRMNGLKFVEHLR 74 (337)
T ss_pred EEEEECCCHHHHHHHH---HHHHHCCCEEEEEC-----CHHHHHHHHHCC----CCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 8999949999999999---99997899999989-----999999998658----999999968999999899999999
No 426
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=74.95 E-value=5.5 Score=20.79 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=21.7
Q ss_pred HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 999983970000247411122669999998523122125888346887
Q gi|254780506|r 55 RMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPS 102 (306)
Q Consensus 55 K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~ 102 (306)
+..+..|++...-.+. +.+.+.+.++ .+|+++.-.|...
T Consensus 38 ~~l~~~gve~v~gD~~---d~~sl~~al~------gvd~v~~~~~~~~ 76 (232)
T pfam05368 38 KSLKAAGVELVEGDLD---DHESLVEALK------GVDVVFSVTGFWL 76 (232)
T ss_pred HHHHHCCCEEEEECCC---CHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 6664179889990688---8789999967------9988999158874
No 427
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=74.80 E-value=7.5 Score=19.84 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=40.2
Q ss_pred EEEEEEECCCHHH--HHHHHHHHHHHHHCCCCEEECCCCC--CCCH-HHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 5999996798678--9999999999998397000024741--1122-669999998523122125888346887
Q gi|254780506|r 34 GLAVVLVGNDPAS--CSYVSAKTRMAKHCGFHSVQYNFPV--DISQ-IDLENAVLSLNKDDSIHGILVQLPLPS 102 (306)
Q Consensus 34 ~LavIlvGddpaS--~~Yv~~K~K~a~~lGI~~~~~~l~~--~~se-~el~~~I~~LN~d~~V~GIlvQlPLP~ 102 (306)
++++|..|.+-.+ ..|.+.-+++++++||.+++..+.. +.+. .++...-+-++. .+|+|++ -|-+.
T Consensus 1 ~ia~~~Pg~~~sdfW~~~~~g~e~~a~eLGI~~ei~~~~~~~~~D~~~Q~~~le~~i~~--~~D~Ii~-tp~~~ 71 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQS--KPDYLIF-TLDSL 71 (280)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEE-ECCCH
T ss_conf 95798479874458999999999999984998699881478874799999999999853--7998999-16805
No 428
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.80 E-value=6.9 Score=20.09 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 468999986204533124676534776422357365224432122010
Q gi|254780506|r 175 KPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 175 ~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~ 222 (306)
+|--.....+|.|...+..... ++.-+...-+.+++|+...+..+.
T Consensus 121 MPN~~~~v~~g~t~~~~~~~~~--~~~~~~v~~lf~~~G~~~~v~E~~ 166 (245)
T PRK07634 121 MPNTAAEIGKSISLYTMGQFVN--ETHQETLQLLLRGIGTSQLCTEEE 166 (245)
T ss_pred CCCHHHHHCCCCEEEECCCCCC--HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 5857489758818985388799--999999999986285499976412
No 429
>PRK07707 consensus
Probab=74.77 E-value=4 Score=21.75 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 67653477642235736522443212201047
Q gi|254780506|r 193 SKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 193 s~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.-|+.+.....+-.|-|-++- |+++..+|.+
T Consensus 156 ~ltr~lA~ela~~gIrVN~I~-PG~i~T~~~~ 186 (239)
T PRK07707 156 SFVKALAKELAPSGIRVNAVA-PGAIETEMLN 186 (239)
T ss_pred HHHHHHHHHHHHHCEEEEEEE-ECCCCCHHHH
T ss_conf 999999999766396999997-4889872333
No 430
>PRK08223 hypothetical protein; Validated
Probab=74.55 E-value=2.9 Score=22.69 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=7.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12899616442034689999862
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSR 184 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~ 184 (306)
++|.|+|.+. +|.|.+.+|...
T Consensus 28 s~VlVvG~GG-lGs~~a~~LAra 49 (287)
T PRK08223 28 SRVAIAGLGG-VGGVHLLTLARL 49 (287)
T ss_pred CCEEEECCCH-HHHHHHHHHHHC
T ss_conf 9689993675-579999999982
No 431
>KOG1210 consensus
Probab=74.55 E-value=6.3 Score=20.37 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=17.1
Q ss_pred HCCEEEEECCCCCCCCCCCC-----CCC-CEEEEEEEEE
Q ss_conf 23573652244321220104-----766-2699831111
Q gi|254780506|r 204 TADILVVAVGRPRMVQVDWI-----KTG-SLVIDVGINR 236 (306)
Q Consensus 204 ~ADivIsAvG~p~~i~~~~v-----k~g-avvIDvGi~~ 236 (306)
.-+|=|+..=-|.+.++-+= ||- +.+|..|.+.
T Consensus 205 ~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss~ 243 (331)
T KOG1210 205 KYGVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGSSV 243 (331)
T ss_pred HCCEEEEEECCCCCCCCCCCCCCCCCCHHEEEECCCCCC
T ss_conf 526699997289878976431023674210310078887
No 432
>PRK06847 hypothetical protein; Provisional
Probab=74.26 E-value=4.1 Score=21.67 Aligned_cols=21 Identities=24% Similarity=0.037 Sum_probs=14.7
Q ss_pred HHHCCEEEEECCCCCCCCCCC
Q ss_conf 422357365224432122010
Q gi|254780506|r 202 CRTADILVVAVGRPRMVQVDW 222 (306)
Q Consensus 202 ~~~ADivIsAvG~p~~i~~~~ 222 (306)
+.+||+||.|=|.--.+...+
T Consensus 149 ~~~adllIGADG~~S~vR~~l 169 (375)
T PRK06847 149 TGRYDLVVGADGVYSKVRSLV 169 (375)
T ss_pred EEEEEEEEECCCCCCHHHHHH
T ss_conf 899879998578762788972
No 433
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.24 E-value=4.5 Score=21.40 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=20.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CHHHHHHHHHHH
Q ss_conf 9996798678999999999999839700002474111-226699999985
Q gi|254780506|r 37 VVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-SQIDLENAVLSL 85 (306)
Q Consensus 37 vIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-se~el~~~I~~L 85 (306)
++++..+.. =.+.....+++.|..+.. ++ |+ +++++.+.++++
T Consensus 37 V~i~~~~~~---~~~~~~~l~~~~g~~~~~-~~--Dvt~~~~v~~~~~~~ 80 (260)
T PRK06603 37 LWFTYQSEV---LEKRVKPLAEEIGCNFVS-EL--DVTNPKSISNLFDDI 80 (260)
T ss_pred EEEECCCHH---HHHHHHHHHHHCCCCEEE-EC--CCCCHHHHHHHHHHH
T ss_conf 999668679---999999999843837698-65--799999999999999
No 434
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=73.97 E-value=3.4 Score=22.19 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=38.5
Q ss_pred ECCCHHHHHHHHHHHHHHHHCCCCEEEC-----------CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 6798678999999999999839700002-----------47411122669999998523122125888346887113788
Q gi|254780506|r 40 VGNDPASCSYVSAKTRMAKHCGFHSVQY-----------NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQS 108 (306)
Q Consensus 40 vGddpaS~~Yv~~K~K~a~~lGI~~~~~-----------~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~ 108 (306)
+|=++.|..--+.--+.|.+-|+.+..+ .|-.|-.+.++.+.|..+=..-+.-+ +..++|-
T Consensus 65 ~~LR~~si~~k~~Sw~~A~~~Gf~V~t~eeai~~ADvV~~LtPD~q~~~v~~~i~p~mk~g~~L~------faHGfnI-- 136 (489)
T PRK05225 65 YALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVVNLTPDKQHSDVVRAVQPLMKQGAALG------YSHGFNI-- 136 (489)
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE------ECCCCEE--
T ss_conf 99555303341667999997799646789973235878870885514899999987612677211------1456505--
Q ss_pred HHHHCCCCCCHHHC--CHHHHHHHHHCCCCCC
Q ss_conf 98606874351321--5533888730477887
Q gi|254780506|r 109 IIQSIVPEKDVDGL--HVVNAGKVMIGDFTTG 138 (306)
Q Consensus 109 i~~~I~p~KDVDGl--~~~N~g~l~~~~~~~~ 138 (306)
+...|.|.+|+|=+ -|..-|.+.+.++..+
T Consensus 137 ~~~~i~~r~di~V~MvAPK~PG~~VR~~y~~G 168 (489)
T PRK05225 137 VEEGEQIRKDITVVMVAPKCPGTEVREEYKRG 168 (489)
T ss_pred EECCCCCCCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 53123168886389975899964899998627
No 435
>PRK06924 short chain dehydrogenase; Provisional
Probab=73.66 E-value=4.8 Score=21.17 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=20.5
Q ss_pred HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECC-CCCCCCCCCC
Q ss_conf 99986204533124676534776422357365224-4321220104
Q gi|254780506|r 179 QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVG-RPRMVQVDWI 223 (306)
Q Consensus 179 ~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG-~p~~i~~~~v 223 (306)
.+-..+.|- +..|+.+........+=|-.+. .|+++..+|.
T Consensus 153 ~Y~aSKaal----~~ltk~lA~E~~~~~~~I~v~av~PG~v~T~m~ 194 (251)
T PRK06924 153 AYCSSKAGL----NMFTQTVATEQEEEEYPVKIIAFSPGVMDTNMQ 194 (251)
T ss_pred HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
T ss_conf 999999999----999999999837159998999984078847456
No 436
>KOG1200 consensus
Probab=73.13 E-value=4.6 Score=21.31 Aligned_cols=144 Identities=22% Similarity=0.226 Sum_probs=66.6
Q ss_pred HHHHHHHCCCCEEECCCCCCCCHHH-----HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHH
Q ss_conf 9999998397000024741112266-----99999985231221258883468871137889860687435132155338
Q gi|254780506|r 53 KTRMAKHCGFHSVQYNFPVDISQID-----LENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNA 127 (306)
Q Consensus 53 K~K~a~~lGI~~~~~~l~~~~se~e-----l~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~ 127 (306)
-+..+..+|-.-.+.-|.-|+++.+ +.+.++.+. .++ ++|-- .+|..+..+-....+ |-|-.-..|+
T Consensus 51 A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g-~ps---vlVnc---AGItrD~~Llrmkq~-qwd~vi~vNL 122 (256)
T KOG1200 51 AEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLG-TPS---VLVNC---AGITRDGLLLRMKQE-QWDSVIAVNL 122 (256)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCC-CCC---EEEEC---CCCCCCCCEEECCHH-HHHHHHHHHC
T ss_conf 799986268877652353046757889999999998429-972---89975---764653020132488-8888997512
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH----HHHHHHHCCCEEECCCCCCCHHHHHH
Q ss_conf 88730477887567667999999998678772001289961644203468----99998620453312467653477642
Q gi|254780506|r 128 GKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM----GQLLLSRNATVTMAHSKTKNLPEICR 203 (306)
Q Consensus 128 g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl----a~lL~~~~atVti~hs~T~~l~~~~~ 203 (306)
..-|+ ||-+++-.+... .+-. --||+-|.+||+-= +.+-..++. |+ ..|+.......
T Consensus 123 --------~gvfl-~tqaa~r~~~~~-~~~~-----~sIiNvsSIVGkiGN~GQtnYAAsK~G-vI---gftktaArEla 183 (256)
T KOG1200 123 --------TGVFL-VTQAAVRAMVMN-QQQG-----LSIINVSSIVGKIGNFGQTNYAASKGG-VI---GFTKTAARELA 183 (256)
T ss_pred --------HHHHH-HHHHHHHHHHHH-CCCC-----CEEEEEHHHHCCCCCCCCHHHHHHCCC-EE---EEEHHHHHHHH
T ss_conf --------13678-889999999971-6798-----438864452102456552234453275-55---30098899886
Q ss_pred HCCEEEEECCCCCCCCCCCCC
Q ss_conf 235736522443212201047
Q gi|254780506|r 204 TADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 204 ~ADivIsAvG~p~~i~~~~vk 224 (306)
+-.|=+-+| -|+||...|-.
T Consensus 184 ~knIrvN~V-lPGFI~tpMT~ 203 (256)
T KOG1200 184 RKNIRVNVV-LPGFIATPMTE 203 (256)
T ss_pred HCCCEEEEE-CCCCCCCHHHH
T ss_conf 548247676-14311681254
No 437
>PRK08219 short chain dehydrogenase; Provisional
Probab=72.95 E-value=4.4 Score=21.45 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=29.1
Q ss_pred EEEEEC-CCCCCHHHH-HHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 289961-644203468-999986204533124676534776422357365224432122010476
Q gi|254780506|r 163 HAVVIG-RSNLFGKPM-GQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 163 ~vvVvG-rs~~VG~Pl-a~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+++.++ .+-..|.|- +.+-..|.|- +..|+.|....+ -.|-|.++ .|++++.+|.++
T Consensus 122 ~IV~isS~~g~~~~~~~~~Y~aSKaAl----~~l~~~L~~e~~-~~IrVn~I-~PG~v~T~m~~~ 180 (226)
T PRK08219 122 HVVFINSGAGLNASPGWASYAASKFAL----RALADALREEEA-GNVRVTSV-HPGRTATDMQRE 180 (226)
T ss_pred EEEEEECHHHCCCCCCCHHHHHHHHHH----HHHHHHHHHHCC-CCEEEEEE-EECCCCCCCCHH
T ss_conf 499994767648899974799999999----999999998669-98499999-708997865355
No 438
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales , and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=72.87 E-value=8.1 Score=19.60 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 999999999839700002474111226699999985231221258883
Q gi|254780506|r 50 VSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQ 97 (306)
Q Consensus 50 v~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQ 97 (306)
++.-+..+++.+++.++-.|-.| +|-+|++.|++.- +.++|||++=
T Consensus 30 ~~~~~~~a~~~~ld~e~~~fQSN-~EG~L~d~Ih~a~-g~~~~GiviN 75 (144)
T TIGR01088 30 EEILETFAAQLNLDVEVEFFQSN-SEGELIDKIHEAL-GQDYDGIVIN 75 (144)
T ss_pred HHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHHH-CCCCCEEEEC
T ss_conf 99999999853982789873044-3578999999872-3886537878
No 439
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.84 E-value=7.8 Score=19.72 Aligned_cols=117 Identities=18% Similarity=0.130 Sum_probs=61.0
Q ss_pred CEEECCCCCCCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCC-CCC
Q ss_conf 000024741112-266999999852312212588834688711378898606874351321553388873047788-756
Q gi|254780506|r 63 HSVQYNFPVDIS-QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTT-GLV 140 (306)
Q Consensus 63 ~~~~~~l~~~~s-e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~-~~~ 140 (306)
++.+--.+|+.. ..++++.++++-.+. -|+--- -+.|+-+.+-....--..+=|+|++|=..++.- -+ -.-
T Consensus 84 DlVIEAV~E~l~~K~~vf~~l~~~~~~~---~IlASN--TSsL~it~iA~~~~~PeR~iG~HFfnP~~~m~L--VEVV~g 156 (503)
T PRK08268 84 DLVVEAIVERLDVKQALFAQLEAIVSDD---CILATN--TSSLSITAIAAALKHPERVAGLHFFNPVPLMKL--VEVVSG 156 (503)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCC---CEEEEC--CCCCCHHHHHHHCCCCCEEEEEEECCCCCCCEE--EEEECC
T ss_conf 9999936067899999999998547988---579841--776779999974698440788771587244604--888079
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCC--CCCHH---HH---HHHHHHHC-CCE
Q ss_conf 766799999999867877200128996164--42034---68---99998620-453
Q gi|254780506|r 141 PCTPAGAILLIEQFKGCDLSGQHAVVIGRS--NLFGK---PM---GQLLLSRN-ATV 188 (306)
Q Consensus 141 PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs--~~VG~---Pl---a~lL~~~~-atV 188 (306)
+.|...++.....+. .--||..|+++.+ -++.| |+ |..|..+| |+.
T Consensus 157 ~~Ts~e~v~~~~~~~--~~lGK~pV~v~d~pGFi~NRi~~~~~~EA~~l~eeGvA~~ 211 (503)
T PRK08268 157 LATDPAVADALYALA--RRWGHTPVRAKDTPGFIVNHAGRPYYTEALRVLGEGVADF 211 (503)
T ss_pred CCCCHHHHHHHHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 999999999999999--9829804895578982088775489999999998289999
No 440
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=72.83 E-value=6.3 Score=20.36 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 698686899999999
Q gi|254780506|r 266 PGGVGPMTIAMLMAN 280 (306)
Q Consensus 266 PGGVGp~Tva~L~~N 280 (306)
--|.|+-|+..|+.+
T Consensus 450 I~GlG~~~i~~L~~~ 464 (668)
T PRK07956 450 IDGLGEKIIEQLFEK 464 (668)
T ss_pred CCCCCHHHHHHHHHC
T ss_conf 466599999999876
No 441
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=72.82 E-value=4.8 Score=21.17 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=13.6
Q ss_pred CCEEECCCCCCCHHHHHHH
Q ss_conf 4533124676534776422
Q gi|254780506|r 186 ATVTMAHSKTKNLPEICRT 204 (306)
Q Consensus 186 atVti~hs~T~~l~~~~~~ 204 (306)
..++. |++|+.+...++.
T Consensus 207 Y~~~~-HrH~pEi~q~l~~ 224 (349)
T COG0002 207 YGLTG-HRHTPEIEQHLGR 224 (349)
T ss_pred CCCCC-CCCHHHHHHHHHH
T ss_conf 54456-6765999998601
No 442
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=72.70 E-value=8.4 Score=19.50 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=9.2
Q ss_pred CCCEEEEECCCCCCH
Q ss_conf 001289961644203
Q gi|254780506|r 160 SGQHAVVIGRSNLFG 174 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG 174 (306)
.|..++++.-+.+.|
T Consensus 159 ~gl~~~ilRp~~v~G 173 (328)
T TIGR03466 159 KGLPVVIVNPSTPIG 173 (328)
T ss_pred CCCCEEEECCCCEEC
T ss_conf 299759977785688
No 443
>KOG0025 consensus
Probab=72.60 E-value=8.4 Score=19.48 Aligned_cols=67 Identities=22% Similarity=0.412 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCC-CCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCCCCHHHHHHH-----CCEEEEE
Q ss_conf 567667999999998678772-001289961644203468999986204-533124676534776422-----3573652
Q gi|254780506|r 139 LVPCTPAGAILLIEQFKGCDL-SGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKTKNLPEICRT-----ADILVVA 211 (306)
Q Consensus 139 ~~PcTp~av~~ll~~y~~i~l-~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T~~l~~~~~~-----ADivIsA 211 (306)
.-||| +..+|++| +++ +|-.+.==|.-..||+-.-+|....|- |+.+... -+|+++.-++ ||.||+-
T Consensus 143 VNP~T---AyrmL~df--v~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRd-R~~ieel~~~Lk~lGA~~ViTe 216 (354)
T KOG0025 143 VNPCT---AYRMLKDF--VQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRD-RPNIEELKKQLKSLGATEVITE 216 (354)
T ss_pred CCCHH---HHHHHHHH--HHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHCCCCEEECH
T ss_conf 37528---99999999--833799824446752288899999999839644777515-8469999999997488668248
No 444
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=72.03 E-value=5.5 Score=20.76 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=23.6
Q ss_pred HHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9986204533124676534776422357365224432122010476
Q gi|254780506|r 180 LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKT 225 (306)
Q Consensus 180 lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~ 225 (306)
+-..|.|-. .-|+.+.....+-.|-|-++ .|+++..+|.+.
T Consensus 152 Y~asKaal~----~ltk~lA~E~a~~gIrvN~I-~PG~i~T~~~~~ 192 (245)
T PRK12824 152 YSAAKAGMI----GFTKALASEGARYGITVNCI-APGYIATPMVEQ 192 (245)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHCEEEEEE-EECCCCCCCCHH
T ss_conf 999999999----99999999972549199999-744687821000
No 445
>PRK06953 short chain dehydrogenase; Provisional
Probab=71.64 E-value=4 Score=21.74 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=14.0
Q ss_pred CEEEEECCCCCCCCCCCCCCC
Q ss_conf 573652244321220104766
Q gi|254780506|r 206 DILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 206 DivIsAvG~p~~i~~~~vk~g 226 (306)
.+-|.++ .|++++.+|=.++
T Consensus 166 ~i~v~ai-~PG~v~T~m~~~~ 185 (222)
T PRK06953 166 HAACIAL-HPGWVRTDMGGAQ 185 (222)
T ss_pred CCEEEEE-ECCCCCCCCCCCC
T ss_conf 9889999-4678257999999
No 446
>PRK06180 short chain dehydrogenase; Provisional
Probab=71.59 E-value=4.3 Score=21.48 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 46765347764223573652244321220104766
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~g 226 (306)
+..|+.|......-.|=|.++ .|++++.+|....
T Consensus 158 ~~lt~sLa~El~~~gIrVn~V-~PG~v~T~f~~~~ 191 (277)
T PRK06180 158 EGISEALAKEVAPFGIHVTAV-EPGSFRTDWAGRS 191 (277)
T ss_pred HHHHHHHHHHHHHHCCEEEEE-ECCCCCCCCCCCC
T ss_conf 999999999843238689999-7078726868876
No 447
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=71.26 E-value=3.8 Score=21.86 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=29.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECC
Q ss_conf 72001289961644203468999986204-533124
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAH 192 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~h 192 (306)
.|..++|+|||.+- .|-|.+.+|...|. |+++..
T Consensus 18 rL~~s~VLiiGaGg-LGs~~~~~LA~AGVG~i~i~D 52 (210)
T TIGR02356 18 RLLASHVLIIGAGG-LGSPAALYLAAAGVGTITIVD 52 (210)
T ss_pred HHHHCCEEEEEECH-HHHHHHHHHHHCCCCEEEEEE
T ss_conf 98608659997261-456899999828883789985
No 448
>pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
Probab=70.80 E-value=4 Score=21.75 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=8.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 89961644203468999986204
Q gi|254780506|r 164 AVVIGRSNLFGKPMGQLLLSRNA 186 (306)
Q Consensus 164 vvVvGrs~~VG~Pla~lL~~~~a 186 (306)
++|-|-|.=.|+-+|..|.++||
T Consensus 3 ~lITGas~GIG~aia~~la~~Ga 25 (167)
T pfam00106 3 VLITGGTGGLGLALARWLAAEGA 25 (167)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99989787899999999998799
No 449
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.73 E-value=2.9 Score=22.70 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=12.4
Q ss_pred EEECCCCHHHHHHCCEECCCCCCCCHHHHHH
Q ss_conf 6841775678731440089869868689999
Q gi|254780506|r 246 VLVGDVADECKSVVGAITPVPGGVGPMTIAM 276 (306)
Q Consensus 246 ~~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~ 276 (306)
..++|...+..+...-+.|++|=||-+-..+
T Consensus 170 ~~~~d~~~~~~~~~GVl~PvvgvigslQA~E 200 (209)
T PRK08644 170 YVVGDFVSEAKPGNGLMAPRVAIAAAHQANL 200 (209)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4369977666668886068999999999999
No 450
>KOG1205 consensus
Probab=70.59 E-value=3.3 Score=22.32 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCC
Q ss_conf 75676679999999986787720012899616442034689-99986204533124676534776422357365224432
Q gi|254780506|r 138 GLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPR 216 (306)
Q Consensus 138 ~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~ 216 (306)
+.+-|| .+++-.|++. + .|+=|+|=--....+-|.. .+-..+.|-.- .+.-|+....+.++.|.-.=.||
T Consensus 125 G~V~~T-k~alp~m~~r-~---~GhIVvisSiaG~~~~P~~~~Y~ASK~Al~~----f~etLR~El~~~~~~i~i~V~PG 195 (282)
T KOG1205 125 GTVYLT-KAALPSMKKR-N---DGHIVVISSIAGKMPLPFRSIYSASKHALEG----FFETLRQELIPLGTIIIILVSPG 195 (282)
T ss_pred HHHHHH-HHHHHHHHHC-C---CCEEEEEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHHCCCCEEEEEEECC
T ss_conf 248999-9998876632-8---9749998061015578865541567999999----99999999640584599998458
Q ss_pred CCCCCCCCCCCEEE
Q ss_conf 12201047662699
Q gi|254780506|r 217 MVQVDWIKTGSLVI 230 (306)
Q Consensus 217 ~i~~~~vk~gavvI 230 (306)
+|..+|.-+...-.
T Consensus 196 ~V~Te~~~~~~~~~ 209 (282)
T KOG1205 196 PIETEFTGKELLGE 209 (282)
T ss_pred CEEECCCCHHHCCC
T ss_conf 15524502543365
No 451
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=70.44 E-value=8.1 Score=19.59 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=34.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC-------------CC------HHHHHHHCCEEEEECCCC
Q ss_conf 1289961644203468999986204533124676-------------53------477642235736522443
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT-------------KN------LPEICRTADILVVAVGRP 215 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T-------------~~------l~~~~~~ADivIsAvG~p 215 (306)
+++.|||.|.-+|.-++.=...||-.||-.-+.. +| +.+.+.--|+||+|.|-+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCC
T ss_conf 9078995374567999999986798048998076766522353020002227456676635876699721578
No 452
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.81 E-value=9.6 Score=19.07 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=45.3
Q ss_pred EEEEEEECC--CHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH
Q ss_conf 599999679--86789999999999998397000024741112266999999852312212588834688711
Q gi|254780506|r 34 GLAVVLVGN--DPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV 104 (306)
Q Consensus 34 ~LavIlvGd--dpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i 104 (306)
+++.|..|. ||==....+.-+++|+++|++..... +++.+.++-++.|+.+= ...+|||+++-+-+..+
T Consensus 1 ki~~v~~~~~~npf~~~v~~G~~~aA~~~Gv~v~~~~-~~~~d~~~Q~~~i~~~i-~~~vDaIii~p~~~~~~ 71 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRG-PETFDVADMARLIEAAI-AAKPDGIVVTIPDPDAL 71 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE-CCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCHH
T ss_conf 9899927999983899999999999999699899996-89899999999999999-75999899937883002
No 453
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=69.68 E-value=6.4 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=13.4
Q ss_pred HHHCCEEEEECCCCCCCCC
Q ss_conf 4223573652244321220
Q gi|254780506|r 202 CRTADILVVAVGRPRMVQV 220 (306)
Q Consensus 202 ~~~ADivIsAvG~p~~i~~ 220 (306)
+-+||.+|.|=|.--.+..
T Consensus 155 ~i~a~lvIgADG~~S~vR~ 173 (391)
T PRK08020 155 TIQAKLVIGADGANSQVRQ 173 (391)
T ss_pred EEEECEEEEECCCCCHHHH
T ss_conf 9983799990799705445
No 454
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=69.22 E-value=4.6 Score=21.28 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=8.2
Q ss_pred HHHCCEEEEECCC
Q ss_conf 4223573652244
Q gi|254780506|r 202 CRTADILVVAVGR 214 (306)
Q Consensus 202 ~~~ADivIsAvG~ 214 (306)
+..||-||.|.|.
T Consensus 244 ~~~ad~vViAaGa 256 (410)
T PRK12409 244 TLEFDGVVVCAGV 256 (410)
T ss_pred EEEEEEEEECCCC
T ss_conf 5883049987666
No 455
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=69.07 E-value=9.9 Score=19.00 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=27.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 128996164420346899998620453312467
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
++++|||-+. +|.=+|.+|.+.|..||+++..
T Consensus 169 ~~~~IIGgG~-ig~E~A~~~~~lG~~Vtli~~~ 200 (453)
T PRK07846 169 ESLVIVGGGF-IAAEFAHVFSALGVRVTVVNRS 200 (453)
T ss_pred CEEEEECCCH-HHHHHHHHHHHHCCEEEEEEEC
T ss_conf 6499989975-7999999999529926899746
No 456
>PRK06444 prephenate dehydrogenase; Provisional
Probab=69.05 E-value=9.2 Score=19.19 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=36.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCC---CCCCCCCCCCEEEEEE
Q ss_conf 2899616442034689999862045331246765347764223573652244321---2201047662699831
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRM---VQVDWIKTGSLVIDVG 233 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~---i~~~~vk~gavvIDvG 233 (306)
.+.|||.-.-.|+=++.+|...|-+|.+ .++|+++.||.--.+ |. +.|..+|||.
T Consensus 2 ~~~iig~~gr~g~~~~~~~~~~g~~v~i------------~k~D~ifiaVPI~~~~~iI~----~~~~tiiDv~ 59 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI------------KKADHAFLSVPIDAALNYIE----SYDNNFVEIS 59 (197)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCCEEEE------------CCCCEEEEEEEHHHHHHHHH----HCCCEEEEEE
T ss_conf 1699637871668999997037847897------------27888999824588899998----4797389988
No 457
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=69.02 E-value=6.9 Score=20.07 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=30.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 720012899616442034689999862045331246765
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTK 196 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~ 196 (306)
.+.||+++|+|-++- .-=-|.+|.+-...||++|++..
T Consensus 140 ~~~~k~v~ViGgG~s-Ave~Al~L~~~a~~Vtlv~r~~~ 177 (305)
T COG0492 140 FFKGKDVVVIGGGDS-AVEEALYLSKIAKKVTLVHRRDE 177 (305)
T ss_pred CCCCCEEEEECCCHH-HHHHHHHHHHHCCEEEEEECCCC
T ss_conf 357984999999878-99999998853683999965866
No 458
>PRK09492 treR trehalose repressor; Provisional
Probab=68.99 E-value=10 Score=18.95 Aligned_cols=92 Identities=8% Similarity=0.151 Sum_probs=55.4
Q ss_pred EEECHH-HHHHHHHHHHHHHHHHHHH---------HCCCCCEEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 500538-9999999999999999998---------36999759999967-986789999999999998397000024741
Q gi|254780506|r 3 SLIDGK-VVASVLTDKIAESVAFLKK---------ETGVQVGLAVVLVG-NDPASCSYVSAKTRMAKHCGFHSVQYNFPV 71 (306)
Q Consensus 3 ~iLdGk-~iA~~i~~~lk~~i~~l~~---------~~g~~P~LavIlvG-ddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~ 71 (306)
+.|+|+ .++++.++++.+-++.|-- ..++.-.+++|... +++....+++.....|++-|....+..-.
T Consensus 23 rvLn~~~~vs~eTr~rV~~~a~elgY~Pn~~Ar~L~~~~t~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~- 101 (315)
T PRK09492 23 RVLNNEPKVSPRTRERVEAVINQHGFSPSKSARAMRGQSDKVVGIIVSRLDSPSENLAVQTMLPAFYQQGYDPIIMESQ- 101 (315)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-
T ss_conf 9978989999999999999999969980778897504888646662267788367899999999999749818999468-
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 11226699999985231221258883
Q gi|254780506|r 72 DISQIDLENAVLSLNKDDSIHGILVQ 97 (306)
Q Consensus 72 ~~se~el~~~I~~LN~d~~V~GIlvQ 97 (306)
-+.+...+.++.+.. ..|||||+.
T Consensus 102 -~~~~~~~~~~~~l~~-~~vdGiIl~ 125 (315)
T PRK09492 102 -FSPQLVNEHLGVLRR-RNVDGVILF 125 (315)
T ss_pred -CCHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf -997999999999996-798989996
No 459
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=68.88 E-value=10 Score=18.94 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=50.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC-CCCC-------------------C-C----HHHHHHH--CCEEEEE
Q ss_conf 200128996164420346899998620453312-4676-------------------5-3----4776422--3573652
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMA-HSKT-------------------K-N----LPEICRT--ADILVVA 211 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~-hs~T-------------------~-~----l~~~~~~--ADivIsA 211 (306)
..+.+|+|+|.+. +|-=.++++...||...+. .... . + ..+.+.. +|++|-|
T Consensus 167 ~~~~~V~V~GaGp-IGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 167 RPGGTVVVVGAGP-IGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 8899899988889-999999999876982799979998999999987797187246301478899986089879999999
Q ss_pred CCCCCCCCC--CCCCCCCEEEEEEEEECC
Q ss_conf 244321220--104766269983111112
Q gi|254780506|r 212 VGRPRMVQV--DWIKTGSLVIDVGINRIN 238 (306)
Q Consensus 212 vG~p~~i~~--~~vk~gavvIDvGi~~~~ 238 (306)
+|.+..+.. +.+++|..++-+|+...+
T Consensus 246 ~G~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 246 VGSPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 89979999999960259899999515886
No 460
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=68.86 E-value=6.6 Score=20.22 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=71.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHHCCC-CCCCEE------EEECCCCCCHHHH
Q ss_conf 999967986789999999999998397000024741112-26699999985231-221258------8834688711378
Q gi|254780506|r 36 AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS-QIDLENAVLSLNKD-DSIHGI------LVQLPLPSTVSEQ 107 (306)
Q Consensus 36 avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s-e~el~~~I~~LN~d-~~V~GI------lvQlPLP~~id~~ 107 (306)
-+|+++-+.+-..= .+.+--.+.|++++.+.. |.+ .+++.....++.++ -.||.. -.+-|+- ..+.+
T Consensus 32 ~liLvaR~~~kL~~--la~~l~~~~~v~v~vi~~--DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~-~~~~~ 106 (265)
T COG0300 32 NLILVARREDKLEA--LAKELEDKTGVEVEVIPA--DLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFL-ELSLD 106 (265)
T ss_pred EEEEEECCHHHHHH--HHHHHHHHHCCEEEEEEC--CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH-HCCHH
T ss_conf 79999676999999--999998730862799977--67883679999999982488523899778747766542-18858
Q ss_pred HHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 89860687435132155338887304778875676679999999986787720012899616442034689999862045
Q gi|254780506|r 108 SIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNAT 187 (306)
Q Consensus 108 ~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~at 187 (306)
+..+.|. .|. .++.-+|-+-.-.+.++- .| -||+=+...|.--.-.+.--.||
T Consensus 107 ~~~~mi~----------lN~---------~a~~~LT~~~lp~m~~~~-----~G---~IiNI~S~ag~~p~p~~avY~AT 159 (265)
T COG0300 107 EEEEMIQ----------LNI---------LALTRLTKAVLPGMVERG-----AG---HIINIGSAAGLIPTPYMAVYSAT 159 (265)
T ss_pred HHHHHHH----------HHH---------HHHHHHHHHHHHHHHHCC-----CC---EEEEEECHHHCCCCCCHHHHHHH
T ss_conf 9999999----------999---------999999999999998658-----96---69998434532888632799999
Q ss_pred EEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 3312467653477642235736522443212201047
Q gi|254780506|r 188 VTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 188 Vti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
=.-..+.|+.|....+..-|-|+++ .|+.+..+|.+
T Consensus 160 Ka~v~~fSeaL~~EL~~~gV~V~~v-~PG~~~T~f~~ 195 (265)
T COG0300 160 KAFVLSFSEALREELKGTGVKVTAV-CPGPTRTEFFD 195 (265)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCC
T ss_conf 9999999999999835898499999-65733355333
No 461
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=68.78 E-value=6.8 Score=20.14 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=19.5
Q ss_pred HHCCEEEEECCCCCCCCCCC--------CCCCCEEEEEEE
Q ss_conf 22357365224432122010--------476626998311
Q gi|254780506|r 203 RTADILVVAVGRPRMVQVDW--------IKTGSLVIDVGI 234 (306)
Q Consensus 203 ~~ADivIsAvG~p~~i~~~~--------vk~gavvIDvGi 234 (306)
-+||.+|.|=|.--.+..-. ....+++.|+-+
T Consensus 154 i~a~llIgADG~~S~vR~~~gi~~~~~~y~q~~~v~~v~~ 193 (384)
T PRK08849 154 IEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVET 193 (384)
T ss_pred EEEEEEEEEECCCHHHHHHCCCCEECCCCCEEEEEEEEEC
T ss_conf 9854799920786466773388545047745899999852
No 462
>PRK05868 hypothetical protein; Validated
Probab=68.56 E-value=6.4 Score=20.30 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=8.4
Q ss_pred HCCEEEEECCCCCCCCC
Q ss_conf 23573652244321220
Q gi|254780506|r 204 TADILVVAVGRPRMVQV 220 (306)
Q Consensus 204 ~ADivIsAvG~p~~i~~ 220 (306)
.+|+||-|=|.---+..
T Consensus 148 ~~DlVIGADGi~S~VR~ 164 (372)
T PRK05868 148 EFDLVIGADGLHSNVRR 164 (372)
T ss_pred EEEEEEECCCCCHHHHH
T ss_conf 86589974787417788
No 463
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=68.43 E-value=10 Score=18.88 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=82.4
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCC---C---HHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCC-HHHHHHH
Q ss_conf 9999998523122125888346887---1---1378898606874351321553388873047788756766-7999999
Q gi|254780506|r 78 LENAVLSLNKDDSIHGILVQLPLPS---T---VSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCT-PAGAILL 150 (306)
Q Consensus 78 l~~~I~~LN~d~~V~GIlvQlPLP~---~---id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcT-p~av~~l 150 (306)
+.+.|+..|.-|- +++++|=|. | +|.-.+.. -+++..... -+=++.. +-++ ..|-- ..-+.+.
T Consensus 243 vwevIeaAnt~P~---~~~~~PGpGvGGHCIpvDP~fl~~-ka~~yg~~~----rlI~tAr-eIN~-~mP~~Vv~~~~~a 312 (436)
T COG0677 243 VWEVIEAANTKPR---VNIFYPGPGVGGHCIPVDPYFLTW-KAPEYGLPA----RLIRTAR-EIND-SMPRHVVDRVKEA 312 (436)
T ss_pred HHHHHHHHCCCCC---EEECCCCCCCCCCCCCCCCHHEEE-CCCCCCCCH----HHHHHHH-HHHC-CCCHHHHHHHHHH
T ss_conf 9999998614981---320489999887635657154042-160027762----8999998-8754-5878999999999
Q ss_pred HHHHCCCCCCCCEEEEECCCCC---------CHHHHHHHHHHHCCCEEECCCC-------------C-CCHHHHHHHCCE
Q ss_conf 9986787720012899616442---------0346899998620453312467-------------6-534776422357
Q gi|254780506|r 151 IEQFKGCDLSGQHAVVIGRSNL---------FGKPMGQLLLSRNATVTMAHSK-------------T-KNLPEICRTADI 207 (306)
Q Consensus 151 l~~y~~i~l~Gk~vvVvGrs~~---------VG~Pla~lL~~~~atVti~hs~-------------T-~~l~~~~~~ADi 207 (306)
|.+ .+..++|-++.|+|-.-= =-..+..+|.++++.|-.+..+ | ..+++..+.+|+
T Consensus 313 l~~-~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~ 391 (436)
T COG0677 313 LNK-AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADA 391 (436)
T ss_pred HHH-CCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHCCCCCHHHHHHHHCCCCE
T ss_conf 997-0888768659999755548995101483589999999719769998898872213453033552547988544888
Q ss_pred EEEECCCCCC--CCCCCCCC-CCEEEEE
Q ss_conf 3652244321--22010476-6269983
Q gi|254780506|r 208 LVVAVGRPRM--VQVDWIKT-GSLVIDV 232 (306)
Q Consensus 208 vIsAvG~p~~--i~~~~vk~-gavvIDv 232 (306)
||-++-+..| ++.+.+.. ..+++|.
T Consensus 392 vVi~tDH~~fk~id~~~i~~~~~vivDt 419 (436)
T COG0677 392 VVIATDHSEFKEIDYEAIGKEAKVIVDT 419 (436)
T ss_pred EEEEECCHHHHCCCHHHHCCCCCEEEEC
T ss_conf 9998446775328998954677289977
No 464
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=68.40 E-value=5.5 Score=20.79 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 46765347764223573652244321220104
Q gi|254780506|r 192 HSKTKNLPEICRTADILVVAVGRPRMVQVDWI 223 (306)
Q Consensus 192 hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~v 223 (306)
+..|+.|......-.|-|.++ .|+++..+++
T Consensus 155 ~~~t~~La~El~~~gIrVn~v-~PG~v~t~~~ 185 (248)
T PRK10538 155 RQFSLNLRTDLHGTAVRVTDI-EPGLVGGTEF 185 (248)
T ss_pred HHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCH
T ss_conf 999999999847868599999-8475768411
No 465
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=68.37 E-value=5.2 Score=20.92 Aligned_cols=139 Identities=11% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEECCCC--------------CCCCHHHHHHHHHHHCCCCCCCEEEEECCC----CCC
Q ss_conf 98678999999999999839700002474--------------111226699999985231221258883468----871
Q gi|254780506|r 42 NDPASCSYVSAKTRMAKHCGFHSVQYNFP--------------VDISQIDLENAVLSLNKDDSIHGILVQLPL----PST 103 (306)
Q Consensus 42 ddpaS~~Yv~~K~K~a~~lGI~~~~~~l~--------------~~~se~el~~~I~~LN~d~~V~GIlvQlPL----P~~ 103 (306)
.|..|-.-=....+.+...|-++.++.=| .=.+.+|+.+.+.++-. +.|.++.-.-+ |..
T Consensus 21 sN~SSGk~G~aiA~~~~~~Ga~Vtli~g~~~~~p~~~~~~~~i~v~ta~em~~~~~~~~~--~~D~~I~aAAVsDy~p~~ 98 (228)
T PRK06732 21 TNHSTGQLGKIIAETFLQAGHEVTLVTTKTAVKPEPHPNLSIIEIENVDDLLATLKPLVP--HHDVLIHSMAVSDYTPVY 98 (228)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC--CCCEEEEEEEECCCEEHH
T ss_conf 767814999999999997899899995677568898898589994589999999997478--999999931810152101
Q ss_pred HHH-HHHHHHCCCCCCHHHC--CHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH--
Q ss_conf 137-8898606874351321--55338887304778-87567667999999998678772001289961644203468--
Q gi|254780506|r 104 VSE-QSIIQSIVPEKDVDGL--HVVNAGKVMIGDFT-TGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPM-- 177 (306)
Q Consensus 104 id~-~~i~~~I~p~KDVDGl--~~~N~g~l~~~~~~-~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pl-- 177 (306)
+.. ..+ ....+++.+ .+...+++..++.. .-.+-.||. ++.+++.+. .+..+||---..|..-
T Consensus 99 ~~~~~~~----~~~~~~~~~~~~~~~~~Ki~s~~~~~~l~L~~~pk-il~~v~~~~------~~~~~VGFklet~~~~e~ 167 (228)
T PRK06732 99 MTDLEEV----SASDNLNEFLCKPNSESKISSASDYQVLFLKKTPK-VISYVKQWN------PNIKLVGFKLLVNVSKEE 167 (228)
T ss_pred HHHHHHH----HCCCHHHHHHCCCCHHCCCCCCCCCCEEECCCCCH-HHHHHHHHC------CCCEEEEEEEECCCCHHH
T ss_conf 1034554----30100344311320111535688733641435819-999988548------996589866423765679
Q ss_pred -----HHHHHHHCCCEEECCC
Q ss_conf -----9999862045331246
Q gi|254780506|r 178 -----GQLLLSRNATVTMAHS 193 (306)
Q Consensus 178 -----a~lL~~~~atVti~hs 193 (306)
..-|.++|+...++|.
T Consensus 168 Li~~A~~kL~~k~~D~ivAN~ 188 (228)
T PRK06732 168 LFKVARASLIKNQADYILAND 188 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999976999999926
No 466
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.03 E-value=5.1 Score=20.97 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC--CCCHHHC
Q ss_conf 6699999985231221258883468871137889860687--4351321
Q gi|254780506|r 76 IDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVP--EKDVDGL 122 (306)
Q Consensus 76 ~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p--~KDVDGl 122 (306)
+.+.+.++++|-+-+|+- .+..++.+.+.+.+.. +--||+.
T Consensus 68 ~~~~~rl~~iNP~~~v~~------~~~~~~~~n~~~ll~~~~D~VvDai 110 (231)
T cd00755 68 EVMAERIRDINPECEVDA------VEEFLTPDNSEDLLGGDPDFVVDAI 110 (231)
T ss_pred HHHHHHHHHHCCCCEEEE------EHHHCCHHHHHHHHCCCCCEEEECC
T ss_conf 999999998799988998------6251599899998454777785344
No 467
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=67.95 E-value=3.1 Score=22.49 Aligned_cols=137 Identities=28% Similarity=0.404 Sum_probs=78.6
Q ss_pred CCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 43513215533888730477887567667999999998678772001289961644203468999986204533124676
Q gi|254780506|r 116 EKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT 195 (306)
Q Consensus 116 ~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T 195 (306)
.|=|=||+...+-.+.-++..+. |--|+ +.++. .| +++|= |.++|.|++=+.|= ++.|||+.
T Consensus 413 ~k~vvGfS~Eal~~~Lg~~~~~~--P~~pL--vd~I~--~G-~IkGV-v~~vgCsnL~~~gq------D~~~v~l~---- 474 (647)
T TIGR01702 413 QKVVVGFSEEALVKALGGKLADD--PLKPL--VDLIA--KG-KIKGV-VLLVGCSNLKNGGQ------DSSTVTLT---- 474 (647)
T ss_pred CEEEEEECHHHHHHHHCCCCCCC--CCCCH--HHHHH--CC-CEEEE-EEEEECCCCCCCCC------CEEEEHHH----
T ss_conf 21788307799999724642347--54004--55410--47-41268-89974303679994------04663132----
Q ss_pred CCHHHHHHHCCEEEEECCCC-------CCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHH-HHHH------CCE
Q ss_conf 53477642235736522443-------212201047662699831111126766885684177567-8731------440
Q gi|254780506|r 196 KNLPEICRTADILVVAVGRP-------RMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADE-CKSV------VGA 261 (306)
Q Consensus 196 ~~l~~~~~~ADivIsAvG~p-------~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~-~~~~------a~~ 261 (306)
+|++|| ||+|.|.|.. ||.+++-.. .++||==-+ |+.. -.-
T Consensus 475 ---KELiKR-dilVla~GC~~~al~~aGL~~~~aa~---------------------~lAGe~LK~VckaLg~~A~~~~~ 529 (647)
T TIGR01702 475 ---KELIKR-DILVLATGCSNGALEKAGLMDPEAAE---------------------ELAGEGLKEVCKALGEAANLEIG 529 (647)
T ss_pred ---HHHHHC-CEEEEECHHHHHHHHHCCCCCHHHHH---------------------HHCCCCHHHHHHHCCCCCCCCCC
T ss_conf ---675305-63566100455687642778978998---------------------64275437899731231467889
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 08986986868999999999999999868898555
Q gi|254780506|r 262 ITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKF 296 (306)
Q Consensus 262 iTPVPGGVGp~Tva~L~~N~v~aa~~~~~~~~~~~ 296 (306)
|=||=- -|+-|-......++.+=-..+|+.-|++
T Consensus 530 iPPVL~-fG~C~d~gR~~~l~~alAe~LGVD~P~L 563 (647)
T TIGR01702 530 IPPVLN-FGSCVDIGRAEALATALAEKLGVDVPQL 563 (647)
T ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 987366-6330008999999999997448897757
No 468
>PRK10083 putative dehydrogenase; Provisional
Probab=67.45 E-value=11 Score=18.75 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH-HCCC-EEECC-------------------CCCCCHHHHHH----HCCEEEEEC
Q ss_conf 72001289961644203468999986-2045-33124-------------------67653477642----235736522
Q gi|254780506|r 158 DLSGQHAVVIGRSNLFGKPMGQLLLS-RNAT-VTMAH-------------------SKTKNLPEICR----TADILVVAV 212 (306)
Q Consensus 158 ~l~Gk~vvVvGrs~~VG~Pla~lL~~-~~at-Vti~h-------------------s~T~~l~~~~~----~ADivIsAv 212 (306)
...|.+++|+|.+. +|-=.++++.+ .+|. |+... +.+.++.+.+. .+|++|-++
T Consensus 158 ~~~g~~VlV~G~G~-iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~GAd~vi~~~~~~~~~~~~~~G~~~dvvid~~ 236 (339)
T PRK10083 158 PTEQDVALIYGAGP-VGLTIVQVLKGVYGVKNVIVADRIDERLALAKESGADWVINNAQESLAEALAEKGVKPTLIFDAA 236 (339)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCCEEEECC
T ss_conf 99998899958765-99999999998569978999379899999999719989984887669999985399961999666
Q ss_pred CCCCCCCC--CCCCCCCEEEEEEEEE
Q ss_conf 44321220--1047662699831111
Q gi|254780506|r 213 GRPRMVQV--DWIKTGSLVIDVGINR 236 (306)
Q Consensus 213 G~p~~i~~--~~vk~gavvIDvGi~~ 236 (306)
|.+..+.. +++++|-.++-+|+..
T Consensus 237 g~~~~~~~a~~~~~~gG~iv~~G~~~ 262 (339)
T PRK10083 237 CHPSILEEAVTLASPAARIVLMGFSS 262 (339)
T ss_pred CCHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 68899999999851880999992589
No 469
>pfam03720 UDPG_MGDP_dh_C UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=67.43 E-value=11 Score=18.75 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=27.6
Q ss_pred CCHHHHHHHCCEEEEECCCCCCCCCCC------CCCCCEEEEE
Q ss_conf 534776422357365224432122010------4766269983
Q gi|254780506|r 196 KNLPEICRTADILVVAVGRPRMVQVDW------IKTGSLVIDV 232 (306)
Q Consensus 196 ~~l~~~~~~ADivIsAvG~p~~i~~~~------vk~gavvIDv 232 (306)
.++.+.++++|++|-++..+.|-.-+| .| ..+++|+
T Consensus 52 ~~~~~~~~~~D~iii~t~h~~f~~i~~~~~~~~~k-~~~I~D~ 93 (99)
T pfam03720 52 DDLEEALKGADAIVILTDHDEFRSLDWAKLKKLMK-PPVVFDG 93 (99)
T ss_pred CCHHHHHHCCCEEEEEECCHHHHCCCHHHHHHHCC-CCEEEEE
T ss_conf 35888962689799973728871589999997569-9999980
No 470
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=67.35 E-value=11 Score=18.73 Aligned_cols=141 Identities=15% Similarity=0.188 Sum_probs=67.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-------------CHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 5999996798678999999999999839700002474111-------------226699999985231221258883468
Q gi|254780506|r 34 GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDI-------------SQIDLENAVLSLNKDDSIHGILVQLPL 100 (306)
Q Consensus 34 ~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~-------------se~el~~~I~~LN~d~~V~GIlvQlPL 100 (306)
+.|+ ||.-||..+=... -.+.|..+.+++-.+.. ..+-+...|+.+-+ .||-+..-+
T Consensus 552 KVAV--IGsGPAGLaAA~~----Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPk~vIdreI~~l~~----~GV~f~tnv 621 (1032)
T PRK09853 552 PVAV--IGAGPAGLAAGYF----LARAGHPVTVFEREENAGGVVKNIIPEFRIPAELIQHDIDFVAA----HGVKFEYGC 621 (1032)
T ss_pred EEEE--ECCCHHHHHHHHH----HHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH----CCCEEEECC
T ss_conf 7999--8968899999999----99779936998158978842673588767899999999999997----796999699
Q ss_pred CCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCC-----CHHHHHHHHHHHCCCC---CCCCEEEEECCCCC
Q ss_conf 871137889860687435132155338887304778875676-----6799999999867877---20012899616442
Q gi|254780506|r 101 PSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPC-----TPAGAILLIEQFKGCD---LSGQHAVVIGRSNL 172 (306)
Q Consensus 101 P~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~Pc-----Tp~av~~ll~~y~~i~---l~Gk~vvVvGrs~~ 172 (306)
-..++.+.+.+. +-|.+ - |..|-..+..++. -....+++|.++..-+ -.||+|+|||-++
T Consensus 622 g~ditle~L~~e-----GyDAV---f---La~GA~~~r~L~IpGe~~gV~~AleFL~~~~~~~~~~~~GK~VVVIGGGN- 689 (1032)
T PRK09853 622 SPDLTVEQLKNQ-----GYHYV---L---LAIGADKNGGLKLAGDNQNVWKSLPFLREYNKGTADLKLGKHVVVVGAGN- 689 (1032)
T ss_pred CCCCCHHHHHHC-----CCCEE---E---EECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEECCCH-
T ss_conf 998889999657-----99999---9---94588988879999865780777999998743898766899389989847-
Q ss_pred CHHHHHHHHHHH-CC-CEEECCCCCC
Q ss_conf 034689999862-04-5331246765
Q gi|254780506|r 173 FGKPMGQLLLSR-NA-TVTMAHSKTK 196 (306)
Q Consensus 173 VG~Pla~lL~~~-~a-tVti~hs~T~ 196 (306)
++.=.|.-..+. || .|++.-++|+
T Consensus 690 TAMDcARTAlRl~GAe~VtivYRRt~ 715 (1032)
T PRK09853 690 TAMDCARAALRVPGVEKVTVVYRRTL 715 (1032)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 99999999875068865899605863
No 471
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=67.10 E-value=11 Score=18.80 Aligned_cols=56 Identities=21% Similarity=0.452 Sum_probs=35.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHH----------------------HHHHHCCEEEEECCCCC
Q ss_conf 0012899616442034689999862045331246765347----------------------76422357365224432
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLP----------------------EICRTADILVVAVGRPR 216 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~----------------------~~~~~ADivIsAvG~p~ 216 (306)
...+++|+|-++ ||+-++.+|.++|-.+++....-...+ .-+.+|.++|.|+.-|.
T Consensus 398 ~~~~VII~G~GR-vGq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~Ar~vViaidd~~ 475 (615)
T PRK03562 398 EQPRVIIAGFGR-FGQIVGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ 475 (615)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH
T ss_conf 899989990280-469999999978998799979999999999679908976899999998679140688999949899
No 472
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=66.81 E-value=5.8 Score=20.62 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=14.4
Q ss_pred HHHHHHCCEEEEECCCCCCCCC
Q ss_conf 7764223573652244321220
Q gi|254780506|r 199 PEICRTADILVVAVGRPRMVQV 220 (306)
Q Consensus 199 ~~~~~~ADivIsAvG~p~~i~~ 220 (306)
.+.+-+||.||-|=|.-..+.+
T Consensus 146 ~~~~l~a~yvVGcDG~~S~vR~ 167 (392)
T PRK08243 146 ETHRIDCDFIAGCDGFHGVSRQ 167 (392)
T ss_pred CEEEEEEEEEEECCCCCCCCCC
T ss_conf 3799998467516889875201
No 473
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=66.48 E-value=6.1 Score=20.47 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCH
Q ss_conf 289961644203468999986204533124676534
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNL 198 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l 198 (306)
+++|||-+. +|-=+|..|...|+.||+++...+-+
T Consensus 1 rv~iiGgG~-ig~E~A~~l~~~G~~Vtiie~~~~~l 35 (82)
T pfam00070 1 RVVVVGGGY-IGLEFASALAKLGSKVTVVERRDRLL 35 (82)
T ss_pred CEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 999999889-99999999986392789981257330
No 474
>PRK07411 hypothetical protein; Validated
Probab=66.35 E-value=5.7 Score=20.65 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--HHHCCHHHHHHH
Q ss_conf 6699999985231221258883468871137889860687435--132155338887
Q gi|254780506|r 76 IDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKD--VDGLHVVNAGKV 130 (306)
Q Consensus 76 ~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KD--VDGl~~~N~g~l 130 (306)
+...+.++++|-+-+|.. .+..++++...+.|... | |||-..+....+
T Consensus 95 ~~a~~~l~~lnp~~~i~~------~~~~l~~~na~~li~~~-DvvvD~tDNf~tRyl 144 (390)
T PRK07411 95 ESAKNRILEINPYCQVDL------YETRLSSENALDILAPY-DVVVDGTDNFPTRYL 144 (390)
T ss_pred HHHHHHHHHHCCCCCCEE------HHHHCCHHHHHHHHCCC-CEEEECCCCHHHHHH
T ss_conf 999999998689864210------34325552488742288-689967888899999
No 475
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.16 E-value=7.4 Score=19.88 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=55.8
Q ss_pred EEECCCCCCCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHH-CCCCCCCCC
Q ss_conf 00024741112-2669999998523122125888346887113788986068743513215533888730-477887567
Q gi|254780506|r 64 SVQYNFPVDIS-QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMI-GDFTTGLVP 141 (306)
Q Consensus 64 ~~~~~l~~~~s-e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~-~~~~~~~~P 141 (306)
+.+--.+|+.. .+++.+.|+++-.++ -|+.-- -+.+..+.+.....--..+=|+|++|=-.++. =+- -.-|
T Consensus 85 lViEav~E~l~iK~~vf~~le~~~~~~---~IlaSn--TSsl~is~la~~~~~p~R~ig~HffnP~~~~~lVEi--v~g~ 157 (282)
T PRK05808 85 LVIEAAVENMDIKKKIFAQLDEIAKPE---AILATN--TSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEI--IRGL 157 (282)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCC---CEEEEC--CCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEE--ECCC
T ss_conf 999877563455699999999557998---489975--887766999977299254205566787233711667--2799
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCC--CCHHHHHHH
Q ss_conf 667999999998678772001289961644--203468999
Q gi|254780506|r 142 CTPAGAILLIEQFKGCDLSGQHAVVIGRSN--LFGKPMGQL 180 (306)
Q Consensus 142 cTp~av~~ll~~y~~i~l~Gk~vvVvGrs~--~VG~Pla~l 180 (306)
.|...++..+..+. .--||..+++..+. ++.|=++.+
T Consensus 158 ~Ts~~~~~~~~~~~--~~lgk~pV~vkd~pGFi~NRl~~a~ 196 (282)
T PRK05808 158 ATSDATHEAVEALA--KKIGKTPVEVNNAPGFVVNRILIPM 196 (282)
T ss_pred CCCHHHHHHHHHHH--HHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999999--8749847998177750899999999
No 476
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.10 E-value=11 Score=18.57 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=9.1
Q ss_pred CEEEEEEECCCHHHHHHHHHH
Q ss_conf 759999967986789999999
Q gi|254780506|r 33 VGLAVVLVGNDPASCSYVSAK 53 (306)
Q Consensus 33 P~LavIlvGddpaS~~Yv~~K 53 (306)
|..-++.+|+=-++..|+-+|
T Consensus 120 p~~~viVv~NPvn~~~~i~~~ 140 (325)
T cd01336 120 KNVKVLVVGNPANTNALILLK 140 (325)
T ss_pred CCEEEEEECCCHHHHHHHHHH
T ss_conf 581999927935889999999
No 477
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=66.02 E-value=11 Score=18.56 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=38.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 1289961644203468999986204533124676534776422357365224432122010476626998
Q gi|254780506|r 162 QHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVID 231 (306)
Q Consensus 162 k~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk~gavvID 231 (306)
+-.+|+|.+.---..+-.+..+. -.+. .|..++|+.+.+++||++|+|-|.--+ -.-.+.--+++|=
T Consensus 202 ~i~vvig~~~~~~~~i~~~~~~~-~~~~-~~~~~~~m~~~m~~aDlaI~agG~t~~-El~~~gvP~i~i~ 268 (280)
T TIGR03590 202 SITLVTGSSNPNLDELKKFAKEY-PNII-LFIDVENMAELMNEADLAIGAAGSTSW-ERCCLGLPSLSIV 268 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CCEE-EECCHHHHHHHHHHCCEEEECCCHHHH-HHHHHCCCEEEEE
T ss_conf 67999867987669999999728-9969-965988999999977999985965899-9999499989999
No 478
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=66.02 E-value=11 Score=18.56 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=56.2
Q ss_pred EEECHH-HHHHHHHHHHHHHHHHHHHHCCCCC------------EEEEEEECC--CHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 500538-9999999999999999998369997------------599999679--8678999999999999839700002
Q gi|254780506|r 3 SLIDGK-VVASVLTDKIAESVAFLKKETGVQV------------GLAVVLVGN--DPASCSYVSAKTRMAKHCGFHSVQY 67 (306)
Q Consensus 3 ~iLdGk-~iA~~i~~~lk~~i~~l~~~~g~~P------------~LavIlvGd--dpaS~~Yv~~K~K~a~~lGI~~~~~ 67 (306)
..|+|+ .++++.++++.+-++.| |..| +...+.+.+ ||-....++.....|.+.|....+.
T Consensus 20 rvLN~~~~Vs~~Tr~rV~~aa~eL----gY~Pn~~Ar~L~~~~s~~Igviv~~~~~~f~~~~~~~i~~~~~~~g~~~~i~ 95 (342)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESL----SYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIG 95 (342)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 997797999999999999999993----9985888886501778879999587754214677889999999759868983
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 474111226699999985231221258883468871137889860687
Q gi|254780506|r 68 NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVP 115 (306)
Q Consensus 68 ~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p 115 (306)
.-..+ .+.-...++.|- ...++|+++.-.....-+...+...++|
T Consensus 96 ~~~~~--~~~e~~~l~~l~-~~~vdgiIi~~~~~~~~~~~~l~~~~p~ 140 (342)
T PRK10727 96 NGYHN--EQKERQAIEQLI-RHRCAALVVHAKMIPDADLASLMKQIPG 140 (342)
T ss_pred CCCCC--HHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 47898--799999999998-5688459994687882889999843997
No 479
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=65.95 E-value=7 Score=20.02 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 8772001289961644203468999986204533124676
Q gi|254780506|r 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKT 195 (306)
Q Consensus 156 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T 195 (306)
|--++||+|+|||.++ -+-=-|..|.+-...||+.|.+.
T Consensus 347 G~~fkgK~VaVvGGGn-sA~eeAl~La~~a~~Vtli~r~~ 385 (515)
T TIGR03140 347 GPFFKGKDVAVIGGGN-SGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CHHCCCCEEEEECCCH-HHHHHHHHHHHHCCEEEEEEECC
T ss_conf 1011897699989977-99999999984177169973652
No 480
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=65.85 E-value=10 Score=18.95 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=8.9
Q ss_pred CCCCCCEEEEECCCCCCH
Q ss_conf 772001289961644203
Q gi|254780506|r 157 CDLSGQHAVVIGRSNLFG 174 (306)
Q Consensus 157 i~l~Gk~vvVvGrs~~VG 174 (306)
.+-.|.++|++--|.+.|
T Consensus 148 a~~~gtRvvllRtGvVLs 165 (297)
T COG1090 148 AQQLGTRVVLLRTGVVLS 165 (297)
T ss_pred HHHCCCEEEEEEEEEEEC
T ss_conf 640684699998877861
No 481
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=65.75 E-value=8.1 Score=19.60 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=10.7
Q ss_pred CCCCCCCHHHHHHHCCEEEE
Q ss_conf 24676534776422357365
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVV 210 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIs 210 (306)
+|..+.+|+..+..-+|=|+
T Consensus 160 V~~fs~~LR~e~~g~~IRVt 179 (246)
T COG4221 160 VRAFSLGLRQELAGTGIRVT 179 (246)
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999987337984699
No 482
>PRK05650 short chain dehydrogenase; Provisional
Probab=65.42 E-value=7.5 Score=19.83 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 0012899616442034689-9998620453312467653477642235736522443212201047
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMG-QLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla-~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.|.=+.|---+-+++.|.. .+-..+.| .+..|+.|....+.-.|=|+++ .|++++.++..
T Consensus 128 ~G~IvnisS~ag~~~~p~~~~Y~asK~a----v~~~tesL~~El~~~gI~V~~v-~PG~v~T~~~~ 188 (270)
T PRK05650 128 KGRIVNIASMAGLMQGPAMSSYNVAKAG----VVALSETLLVELADDEIGVHVV-CPSFFQTNLLD 188 (270)
T ss_pred CCEEEEECCHHHCCCCCCCHHHHHHHHH----HHHHHHHHHHHHCCCCCEEEEE-ECCCCCCCCCC
T ss_conf 9589998585552899996679999999----9999999999853219689999-73889866565
No 483
>PRK07023 short chain dehydrogenase; Provisional
Probab=65.29 E-value=12 Score=18.46 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=19.2
Q ss_pred CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 2467653477642235736522443212201047
Q gi|254780506|r 191 AHSKTKNLPEICRTADILVVAVGRPRMVQVDWIK 224 (306)
Q Consensus 191 ~hs~T~~l~~~~~~ADivIsAvG~p~~i~~~~vk 224 (306)
.+..|+.+... ..-.|-|.++- |++++.+|..
T Consensus 157 l~~~t~sla~E-~~~~IrVn~V~-PG~v~T~m~~ 188 (243)
T PRK07023 157 LDHHARAVALE-ANRALRIVSLA-PGVVDTGMQA 188 (243)
T ss_pred HHHHHHHHHHH-CCCCCEEEEEE-CCCCCCHHHH
T ss_conf 99999999986-79998899996-3779774667
No 484
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=65.03 E-value=5.3 Score=20.88 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=42.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECC---------------------------------------------
Q ss_conf 2001289961644203468999986204-533124---------------------------------------------
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAH--------------------------------------------- 192 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~h--------------------------------------------- 192 (306)
+...+|+|||-+. +|-|++.+|...|- ++++++
T Consensus 30 L~~s~VlivG~GG-lG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGLGG-LGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETIN 108 (245)
T ss_pred HHHCCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEH
T ss_conf 9719789987777-789999999985996599996886788867888645987789887999999999758875226333
Q ss_pred CC--CCCHHHHHHHCCEEEEECCCCCCCCCCC-----CCCCCEEEEEEEE
Q ss_conf 67--6534776422357365224432122010-----4766269983111
Q gi|254780506|r 193 SK--TKNLPEICRTADILVVAVGRPRMVQVDW-----IKTGSLVIDVGIN 235 (306)
Q Consensus 193 s~--T~~l~~~~~~ADivIsAvG~p~~i~~~~-----vk~gavvIDvGi~ 235 (306)
.+ ..|+.++++.+|+||.|.-- |-++.| ++.+--.|..|+.
T Consensus 109 ~~i~~~n~~~li~~~DlViD~~Dn--~~~R~~ln~~c~~~~~P~v~g~~~ 156 (245)
T PRK05690 109 ARLDDDELAALIAAHDLVLDCTDN--VATRNQLNAACFAAKKPLVSGAAI 156 (245)
T ss_pred HCCCHHHHHHHHHCCCEEEECCCC--HHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 144888998875078889987899--999999999999719987987788
No 485
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase; InterPro: IPR006415 This group describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms . These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis .; GO: 0015444 magnesium-importing ATPase activity, 0015693 magnesium ion transport, 0016021 integral to membrane.
Probab=64.55 E-value=12 Score=18.37 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 9999999999998369997599999679867899999999999983970000247411
Q gi|254780506|r 15 TDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVD 72 (306)
Q Consensus 15 ~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~ 72 (306)
++.-++-++.|++ +|+. +=||.||+| =-..|-|.|+||+.+.+-+..|
T Consensus 542 Kest~~AiaaL~~-ngi~---VKvLTGDne------~VtariC~EVGida~d~l~G~d 589 (892)
T TIGR01524 542 KESTKKAIAALKK-NGIA---VKVLTGDNE------VVTARICLEVGIDANDVLLGAD 589 (892)
T ss_pred HHHHHHHHHHHHH-CCCE---EEEEECCCH------HHHHHHCCCCCCCCCCEEECCC
T ss_conf 1017999999985-7978---999618865------7873211004557677575323
No 486
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=64.46 E-value=9.6 Score=19.08 Aligned_cols=158 Identities=20% Similarity=0.152 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH----HCC
Q ss_conf 9999999999999998369997599999679867899999999999983970000247411122669999998----523
Q gi|254780506|r 12 SVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLS----LNK 87 (306)
Q Consensus 12 ~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~----LN~ 87 (306)
.-|--.+.++...+ |. .+|..|-+.+ +..+-.++--+|-...+...+.-+-.++.+.+.+ ||-
T Consensus 15 sGIGl~lak~f~el----gN----~VIi~gR~e~-----~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNv 81 (245)
T COG3967 15 SGIGLALAKRFLEL----GN----TVIICGRNEE-----RLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNV 81 (245)
T ss_pred CHHHHHHHHHHHHH----CC----EEEEECCCHH-----HHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHHHHCCCHHE
T ss_conf 43659999999983----89----7999657499-----99999860941315651320356699999999862986113
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 12212588834688711378898606874351321553388873047788756766799999999867877200128996
Q gi|254780506|r 88 DDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVI 167 (306)
Q Consensus 88 d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~av~~ll~~y~~i~l~Gk~vvVv 167 (306)
=-.-.||+=+.-|. +. =+..+|.+-= +. -.|+ ++-.-.-.+|.|+. +-.+..||
T Consensus 82 liNNAGIqr~~dlt-~~--------e~~~~~~~~e-------I~-----~Nl~-API~Lt~~~lphl~----~q~~a~II 135 (245)
T COG3967 82 LINNAGIQRNEDLT-GA--------EDLLDDAEQE-------IA-----TNLL-APIRLTALLLPHLL----RQPEATII 135 (245)
T ss_pred EEECCCCCCHHHCC-CC--------CCHHHHHHHH-------HH-----HHHH-HHHHHHHHHHHHHH----HCCCCEEE
T ss_conf 43030003201115-87--------3125678888-------88-----7510-27999999999997----19773699
Q ss_pred CCCCCCHHHHHHHHHHH----CCCEEECCCCCCCHHHHHHHCCEEEEEC
Q ss_conf 16442034689999862----0453312467653477642235736522
Q gi|254780506|r 168 GRSNLFGKPMGQLLLSR----NATVTMAHSKTKNLPEICRTADILVVAV 212 (306)
Q Consensus 168 Grs~~VG~Pla~lL~~~----~atVti~hs~T~~l~~~~~~ADivIsAv 212 (306)
+-|. -||..-+.. .||=.-.||+|..|++..|.-.|=|--+
T Consensus 136 nVSS----GLafvPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~ 180 (245)
T COG3967 136 NVSS----GLAFVPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIEL 180 (245)
T ss_pred EECC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 8325----53457654555202438899998999999864365689995
No 487
>PRK06179 short chain dehydrogenase; Provisional
Probab=64.21 E-value=6.2 Score=20.40 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHH
Q ss_conf 001289961644203468999986204533124676534776
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEI 201 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~ 201 (306)
..|.++|-|.|.=.|+-+|..|.++|++|..+-++...+.+.
T Consensus 3 ~~KvalITGassGIG~a~A~~la~~G~~V~~~~r~~~~~~~~ 44 (270)
T PRK06179 3 NKKVALVTGASSGIGRATAEALARAGYRVFGTSRNPARATPI 44 (270)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 995899907246999999999998799999996897773054
No 488
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=64.21 E-value=12 Score=18.33 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCC-----------------CCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHH-
Q ss_conf 6799999999867877200128996164-----------------4203468999986204533124676534776422-
Q gi|254780506|r 143 TPAGAILLIEQFKGCDLSGQHAVVIGRS-----------------NLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRT- 204 (306)
Q Consensus 143 Tp~av~~ll~~y~~i~l~Gk~vvVvGrs-----------------~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~- 204 (306)
||. ++.|.+.+.. .|.++.|+-|+ ..||---.++....++.|.+|..+....+.....
T Consensus 72 TP~-vi~L~~~L~~---~G~k~~IlSRGYg~~~~~~~~v~~~~~~~~vGDEpllla~~~~~pV~V~~~R~~~~~~l~~~~ 147 (339)
T PRK01906 72 TPT-VIALVDALRA---AGFTPGVVSRGYGAKVKAPTAVTPASRASDAGDEPLLIARRTDAPVWVCPDRVAAAQALLAAH 147 (339)
T ss_pred HHH-HHHHHHHHHH---CCCCEEEEECCCCCCCCCCEEECCCCCHHHCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 799-9999999997---699559985464555677666237864433176899987435960898256999999999748
Q ss_pred --CCEEEE
Q ss_conf --357365
Q gi|254780506|r 205 --ADILVV 210 (306)
Q Consensus 205 --ADivIs 210 (306)
+|++|.
T Consensus 148 ~~~dvIIl 155 (339)
T PRK01906 148 PEVDVIVS 155 (339)
T ss_pred CCCCEEEE
T ss_conf 89988995
No 489
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.05 E-value=9.4 Score=19.14 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC-CCEEECCCCCCCHHHHHHHCCEEEEECCCCC
Q ss_conf 200128996164420346899998620-4533124676534776422357365224432
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRN-ATVTMAHSKTKNLPEICRTADILVVAVGRPR 216 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~-atVti~hs~T~~l~~~~~~ADivIsAvG~p~ 216 (306)
|...+|+|||.+. +|-|++++|...| .+.++++-.+-++...-||-=.=-..+|+++
T Consensus 26 L~~s~VlvvG~GG-LG~~~~~yLa~aGvG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K 83 (355)
T PRK05597 26 LFDAKVSVIGAGG-LGSPALLYLAGAGVGHITIIDDDVVDLSNLHRQVIHTTAGVGTPK 83 (355)
T ss_pred HHCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCH
T ss_conf 8629689987776-689999999984997599972999261213377565412179797
No 490
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=64.00 E-value=7.8 Score=19.71 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 200128996164420346899998620453312467
Q gi|254780506|r 159 LSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194 (306)
Q Consensus 159 l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~ 194 (306)
++||+++|||.+. .+-=.|.+|.+-+..||+.|++
T Consensus 141 f~gK~V~VIGGG~-~A~EeA~~Ls~~askVtII~r~ 175 (555)
T TIGR03143 141 FTGMDVFVIGGGF-AAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 1798699983888-9999999999748908999978
No 491
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=63.72 E-value=6 Score=20.48 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 998678772001289961644203468999986204533
Q gi|254780506|r 151 IEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVT 189 (306)
Q Consensus 151 l~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVt 189 (306)
++++.--+..||+|.|+|-+. -|--||..|++.|.+|+
T Consensus 391 ~~~plp~~~tg~~VLVvGlGP-AG~tLsH~Lln~Gh~Vv 428 (1048)
T PRK06567 391 IYAPLPKEPTNYNILVTGLGP-AGFSLSYYLLRSGHNVT 428 (1048)
T ss_pred CCCCCCCCCCCCEEEEEECCC-CCHHHHHHHHHCCCCEE
T ss_conf 468788888996489992486-52018899874787289
No 492
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit; InterPro: IPR014067 This entry represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. .
Probab=63.69 E-value=2.5 Score=23.11 Aligned_cols=9 Identities=78% Similarity=1.520 Sum_probs=0.0
Q ss_pred CCCCCCCCH
Q ss_conf 898698686
Q gi|254780506|r 263 TPVPGGVGP 271 (306)
Q Consensus 263 TPVPGGVGp 271 (306)
+|++|||||
T Consensus 39 ~p~~GGVGp 47 (130)
T TIGR02694 39 RPVEGGVGP 47 (130)
T ss_pred CCCCCCCCC
T ss_conf 456586468
No 493
>PRK05599 hypothetical protein; Provisional
Probab=63.55 E-value=7.6 Score=19.79 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHH
Q ss_conf 289961644203468999986204533124676534776422
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRT 204 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ 204 (306)
+|+|.|-|.=.|+-+|..|. +|+.|.++-++...+++...+
T Consensus 2 tvlITGASsGIG~a~A~~lA-~G~~vvl~~R~~e~l~~l~~~ 42 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLA-HGEDVVLAARRPEAAGGLAED 42 (246)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHH
T ss_conf 89998886899999999998-599499999999999999999
No 494
>KOG1198 consensus
Probab=63.04 E-value=13 Score=18.19 Aligned_cols=94 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHCC------CCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCEEECCC------------------C
Q ss_conf 67667999999998678------77200128996164420346899998620-45331246------------------7
Q gi|254780506|r 140 VPCTPAGAILLIEQFKG------CDLSGQHAVVIGRSNLFGKPMGQLLLSRN-ATVTMAHS------------------K 194 (306)
Q Consensus 140 ~PcTp~av~~ll~~y~~------i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~-atVti~hs------------------~ 194 (306)
+|+++.-...-+.+. . -.-+|+.++|.|.|.=||.-.-+++...+ ..|+.|-| +
T Consensus 132 ~p~~~~tA~~al~~~-~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~ 210 (347)
T KOG1198 132 LPLAALTALSALFQL-APGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYK 210 (347)
T ss_pred CCHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCC
T ss_conf 761678999998750-5544323568998699993874899999999987497479998155416899972996512488
Q ss_pred CCCHHHHHHH-----CCEEEEECCC-CCCCCCCCCCCCCEEEEEEE
Q ss_conf 6534776422-----3573652244-32122010476626998311
Q gi|254780506|r 195 TKNLPEICRT-----ADILVVAVGR-PRMVQVDWIKTGSLVIDVGI 234 (306)
Q Consensus 195 T~~l~~~~~~-----ADivIsAvG~-p~~i~~~~vk~gavvIDvGi 234 (306)
+.|..+.++. -|+|+-++|- .-...-+.++.+.-...+|+
T Consensus 211 ~~~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~ 256 (347)
T KOG1198 211 DENVVELIKKYTGKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGL 256 (347)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 5779999876227885099988889732432343323787269994
No 495
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=62.91 E-value=13 Score=18.17 Aligned_cols=72 Identities=18% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999836999759999967986789999999999998397000024741112266999999852312
Q gi|254780506|r 10 VASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDD 89 (306)
Q Consensus 10 iA~~i~~~lk~~i~~l~~~~g~~P~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~ 89 (306)
+.+.+|.+.++.++.+++. |++ .+++-||++.+..++ |+++||+ ++-.+.+.++=++.|++|-+.-
T Consensus 447 L~D~iRp~a~eaI~~Lr~~-GI~---vvMITGDn~~TA~aI------A~elGID----d~~A~~tPedKl~iVk~LQ~~G 512 (684)
T PRK01122 447 LKDIVKPGIKERFAQLRKM-GIK---TVMITGDNPLTAAAI------AAEAGVD----DFLAEATPEDKLALIRQEQAEG 512 (684)
T ss_pred ECCCCCHHHHHHHHHHHHC-CCE---EEEECCCCHHHHHHH------HHHHCCH----HHHHCCCHHHHHHHHHHHHHCC
T ss_conf 2688975499999999987-992---999989896999999------9984956----5565799999999999998485
Q ss_pred CCCEEE
Q ss_conf 212588
Q gi|254780506|r 90 SIHGIL 95 (306)
Q Consensus 90 ~V~GIl 95 (306)
++-++.
T Consensus 513 ~vVAMt 518 (684)
T PRK01122 513 RLVAMT 518 (684)
T ss_pred CEEEEE
T ss_conf 979996
No 496
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=62.62 E-value=13 Score=18.21 Aligned_cols=53 Identities=19% Similarity=0.511 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHH----------------------HHHCCEEEEECCCCC
Q ss_conf 289961644203468999986204533124676534776----------------------422357365224432
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEI----------------------CRTADILVVAVGRPR 216 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~----------------------~~~ADivIsAvG~p~ 216 (306)
+|+|+|-++ +|+-++.+|.++|-.+++....-...+.. +.+|..+|.|+.-|.
T Consensus 402 ~VII~G~GR-~Gq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai~d~~ 476 (602)
T PRK03659 402 QVIIVGFGR-FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (602)
T ss_pred CEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH
T ss_conf 989978875-689999999978999899978679999999789908975899999998679040588999829899
No 497
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.60 E-value=9 Score=19.26 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCEEEEEC
Q ss_conf 28996164420346899998620453312467653477642235736522
Q gi|254780506|r 163 HAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAV 212 (306)
Q Consensus 163 ~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~~~~~ADivIsAv 212 (306)
+|+|||.+. ||.-+|..|.++|-.|+++..++..-++... |.=.+|+
T Consensus 3 DV~IvGaG~-vGl~lAl~La~~g~~v~lie~~~~~~~~~~~--d~R~~al 49 (374)
T PRK06617 3 NTVILGCGL-SGMLTALSFAQKGIKTTIFESKSVKSPEFFK--DIRTTAL 49 (374)
T ss_pred EEEEECCCH-HHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCEEEE
T ss_conf 299999669-9999999998579969999789978866579--9634674
No 498
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=62.55 E-value=13 Score=18.13 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 599999679867899999999999983970000247411122669999998523122125888
Q gi|254780506|r 34 GLAVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILV 96 (306)
Q Consensus 34 ~LavIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~se~el~~~I~~LN~d~~V~GIlv 96 (306)
++++|.-+.||==....+.-+++|+++|++.... .+.+-+.+.-.+.|+.+ -+..+|||++
T Consensus 1 ti~iv~~~~npf~~~v~~G~~~aA~e~Gv~v~~~-~~~~~d~~~Q~~~i~~~-i~~~vDaIii 61 (271)
T cd06314 1 TIAVVTNGASPFWKIAEAGVKAAGKELGVDVEFV-VPQQGTVNAQLRMLEDL-IAEGVDGIAI 61 (271)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEE-ECCCCCHHHHHHHHHHH-HHCCCCEEEE
T ss_conf 9899289999669999999999999859989999-68999999999999999-9759999999
No 499
>KOG1502 consensus
Probab=62.51 E-value=13 Score=18.12 Aligned_cols=65 Identities=28% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHH--HHHHCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 00128996164420346899998620453312467653477--642235736522443212201047662
Q gi|254780506|r 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPE--ICRTADILVVAVGRPRMVQVDWIKTGS 227 (306)
Q Consensus 160 ~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs~T~~l~~--~~~~ADivIsAvG~p~~i~~~~vk~ga 227 (306)
.++.|+|-|.|..+|.=+...|+.+|.+|.-.-+...|.+. ++++-+ .|--+-.++.+|-.-+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~---~a~~~l~l~~aDL~d~~s 71 (327)
T KOG1502 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLE---GAKERLKLFKADLLDEGS 71 (327)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCC---CCCCCCEEEECCCCCCCH
T ss_conf 8727999488208999999999868998999970863056589998651---575442588524355135
No 500
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes . The plsX gene encodes a poorly understood enzyme of phospholipid metabolism .; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process.
Probab=62.51 E-value=5.8 Score=20.58 Aligned_cols=57 Identities=28% Similarity=0.360 Sum_probs=0.0
Q ss_pred HCCEEEEE-------------------CCCCCC--CCCCCC-CCCCEEEEEEEEECCCCC-CCCCEEECCCCHH-HHHHC
Q ss_conf 23573652-------------------244321--220104-766269983111112676-6885684177567-87314
Q gi|254780506|r 204 TADILVVA-------------------VGRPRM--VQVDWI-KTGSLVIDVGINRINSPQ-LGKTVLVGDVADE-CKSVV 259 (306)
Q Consensus 204 ~ADivIsA-------------------vG~p~~--i~~~~v-k~gavvIDvGi~~~~~~~-~~~~~~~GDvd~~-~~~~a 259 (306)
+||.+||| +-||=| +=|.+- +...++.|||=|.+..|+ -..+-|.|+|.-+ +..+.
T Consensus 94 ~ADa~iSAG~sGa~m~la~l~lGri~G~~rPA~~t~~Pt~~P~~~~~~LDvGAN~dc~p~~L~~fAlMG~vy~~~v~~~~ 173 (344)
T TIGR00182 94 RADAVISAGNSGALMGLALLRLGRIKGIERPALVTLLPTVNPKDKFVLLDVGANVDCKPKYLVQFALMGSVYAKKVLGVD 173 (344)
T ss_pred CCCEEEECCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 97489986538999999864045415676651014277011896269985556757884323344101332111100058
Q ss_pred C
Q ss_conf 4
Q gi|254780506|r 260 G 260 (306)
Q Consensus 260 ~ 260 (306)
+
T Consensus 174 s 174 (344)
T TIGR00182 174 S 174 (344)
T ss_pred C
T ss_conf 9
Done!