254780507
hypothetical protein CLIBASIA_01970
GeneID in NCBI database: | 8209502 | Locus tag: | CLIBASIA_01970 |
Protein GI in NCBI database: | 254780507 | Protein Accession: | YP_003064920.1 |
Gene range: | +(768513, 769043) | Protein Length: | 176aa |
Gene description: | hypothetical protein | ||
COG prediction: | [O] Chaperonin GroEL (HSP60 family) | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | hypothetical protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 176 | hypothetical protein CLIBASIA_01970 [Candidatus Liberib | |||
315122296 | 191 | hypothetical protein CKC_02740 [Candidatus Liberibacter | 1 | 4e-61 | |
163758044 | 185 | hypothetical protein HPDFL43_00425 [Hoeflea phototrophi | 1 | 1e-19 | |
190890394 | 179 | hypothetical protein RHECIAT_CH0000769 [Rhizobium etli | 1 | 3e-18 | |
218509489 | 179 | hypothetical protein RetlB5_19254 [Rhizobium etli Brasi | 1 | 5e-18 | |
209547958 | 179 | hypothetical protein Rleg2_0350 [Rhizobium leguminosaru | 1 | 9e-18 | |
110632628 | 161 | hypothetical protein Meso_0267 [Mesorhizobium sp. BNC1] | 1 | 2e-17 | |
116250512 | 179 | transmembrane protein [Rhizobium leguminosarum bv. vici | 1 | 2e-17 | |
241203136 | 179 | hypothetical protein Rleg_0382 [Rhizobium leguminosarum | 1 | 3e-17 | |
86356342 | 179 | hypothetical protein RHE_CH00691 [Rhizobium etli CFN 42 | 1 | 4e-17 | |
222084897 | 178 | hypothetical protein Arad_0927 [Agrobacterium radiobact | 1 | 4e-17 |
>gi|315122296|ref|YP_004062785.1| hypothetical protein CKC_02740 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 191 | Back alignment and organism information |
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Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 113/172 (65%), Positives = 140/172 (81%) Query: 2 LKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVL 61 ++F FSGIWIS++T+ SFY+LFLRS+D +E+ P ++ ++I ELV+IPS+SNG+L Sbjct: 17 VEFFFSGIWISIITIASFYILFLRSVDPQIESSKPLTTEQSIHMITGELVAIPSISNGIL 76 Query: 62 QAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDL 121 QAYF VKLSFIVND Q + YLKEI+TDYLYTLLSGPPMGD VQIK+FG DN RKKIKEDL Sbjct: 77 QAYFFVKLSFIVNDRQSKYYLKEISTDYLYTLLSGPPMGDIVQIKSFGMDNFRKKIKEDL 136 Query: 122 NSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKE 173 N +LGSQFIS+VLI+ELNYLSI D+R NC L S+LM QK SL++K K+ Sbjct: 137 NLKLGSQFISDVLINELNYLSIADIRLNCFHLSDKESNLMAQKKSLLDKAKD 188 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|163758044|ref|ZP_02165132.1| hypothetical protein HPDFL43_00425 [Hoeflea phototrophica DFL-43] Length = 185 | Back alignment and organism information |
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>gi|190890394|ref|YP_001976936.1| hypothetical protein RHECIAT_CH0000769 [Rhizobium etli CIAT 652] Length = 179 | Back alignment and organism information |
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>gi|218509489|ref|ZP_03507367.1| hypothetical protein RetlB5_19254 [Rhizobium etli Brasil 5] Length = 179 | Back alignment and organism information |
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>gi|209547958|ref|YP_002279875.1| hypothetical protein Rleg2_0350 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 179 | Back alignment and organism information |
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>gi|110632628|ref|YP_672836.1| hypothetical protein Meso_0267 [Mesorhizobium sp. BNC1] Length = 161 | Back alignment and organism information |
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>gi|116250512|ref|YP_766350.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 179 | Back alignment and organism information |
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>gi|241203136|ref|YP_002974232.1| hypothetical protein Rleg_0382 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 179 | Back alignment and organism information |
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>gi|86356342|ref|YP_468234.1| hypothetical protein RHE_CH00691 [Rhizobium etli CFN 42] Length = 179 | Back alignment and organism information |
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>gi|222084897|ref|YP_002543426.1| hypothetical protein Arad_0927 [Agrobacterium radiobacter K84] Length = 178 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 176 | hypothetical protein CLIBASIA_01970 [Candidatus Liberib | ||
PRK12785 | 167 | fliL flagellar basal body-associated protein FliL; Revi | 99.88 | |
PRK07021 | 159 | fliL flagellar basal body-associated protein FliL; Revi | 99.86 | |
pfam03748 | 145 | FliL Flagellar basal body-associated protein FliL. This | 99.84 | |
PRK07718 | 142 | fliL flagellar basal body-associated protein FliL; Revi | 99.83 | |
PRK05696 | 168 | fliL flagellar basal body-associated protein FliL; Revi | 99.81 | |
COG1580 | 159 | FliL Flagellar basal body-associated protein [Cell moti | 99.74 | |
PRK08455 | 180 | fliL flagellar basal body-associated protein FliL; Revi | 99.82 | |
PRK05697 | 135 | flagellar basal body-associated protein FliL-like prote | 99.56 | |
PRK06654 | 177 | fliL flagellar basal body-associated protein FliL; Revi | 98.68 |
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed | Back alignment and domain information |
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>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed | Back alignment and domain information |
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>pfam03748 FliL Flagellar basal body-associated protein FliL | Back alignment and domain information |
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>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed | Back alignment and domain information |
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>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed | Back alignment and domain information |
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>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed | Back alignment and domain information |
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>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated | Back alignment and domain information |
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>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00