254780507

254780507

hypothetical protein CLIBASIA_01970

GeneID in NCBI database:8209502Locus tag:CLIBASIA_01970
Protein GI in NCBI database:254780507Protein Accession:YP_003064920.1
Gene range:+(768513, 769043)Protein Length:176aa
Gene description:hypothetical protein
COG prediction:[O] Chaperonin GroEL (HSP60 family)
KEGG prediction:hypothetical protein
SEED prediction:hypothetical protein
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM1 TM-Helix
TOPPRED2 TM-Helix
HMMTOP3 TM-Helix
MEMSAT1 TM-Helix
MEMSAT_SVM1 TM-Helix
PHOBIUS1 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK
cHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccEEEEEEEEcccEEEcccEEEEEEEEEEEEEccHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHccHHHHccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccEEEEcEEEEEEEEccccEEEEEEEEEEEEEcHHHccccHHHHHHHHHHHHHHcccccccccccEccHHHHHHHHHHHHHHHHccccHHHHHHHcccEEcHHHHHHHHHcccccHHHHHHccccHHHccccccc
MLKFLFSGIWISVVTLISFYMLFLRSMDTMvenhvpplaikntnIIKSELVsipsvsngVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTllsgppmgdfvqikafgfDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSnclrlgsnasdlmtqkgslieknkeplk
mlkflfsgIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDlnsrlgsqfISEVLIDELNYLSIVDMRSNCLRLGSNasdlmtqkgslieknkeplk
MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK
MLKFLFSGIWISVVTLISFYMLF**********************IKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIV********************************
MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK
MLKFLFSGIWISVVTLISFYMLFLRSMDTMV*NHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASD***QKGSLIEK******
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxhhhhhhhhhhhhhhhhhhhhxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK
MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK
MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target176 hypothetical protein CLIBASIA_01970 [Candidatus Liberib
315122296191 hypothetical protein CKC_02740 [Candidatus Liberibacter 1 4e-61
163758044185 hypothetical protein HPDFL43_00425 [Hoeflea phototrophi 1 1e-19
190890394179 hypothetical protein RHECIAT_CH0000769 [Rhizobium etli 1 3e-18
218509489179 hypothetical protein RetlB5_19254 [Rhizobium etli Brasi 1 5e-18
209547958179 hypothetical protein Rleg2_0350 [Rhizobium leguminosaru 1 9e-18
110632628161 hypothetical protein Meso_0267 [Mesorhizobium sp. BNC1] 1 2e-17
116250512179 transmembrane protein [Rhizobium leguminosarum bv. vici 1 2e-17
241203136179 hypothetical protein Rleg_0382 [Rhizobium leguminosarum 1 3e-17
86356342179 hypothetical protein RHE_CH00691 [Rhizobium etli CFN 42 1 4e-17
222084897178 hypothetical protein Arad_0927 [Agrobacterium radiobact 1 4e-17
>gi|315122296|ref|YP_004062785.1| hypothetical protein CKC_02740 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 191 Back     alignment and organism information
 Score =  237 bits (605), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 140/172 (81%)

Query: 2   LKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVL 61
           ++F FSGIWIS++T+ SFY+LFLRS+D  +E+  P    ++ ++I  ELV+IPS+SNG+L
Sbjct: 17  VEFFFSGIWISIITIASFYILFLRSVDPQIESSKPLTTEQSIHMITGELVAIPSISNGIL 76

Query: 62  QAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDL 121
           QAYF VKLSFIVND Q + YLKEI+TDYLYTLLSGPPMGD VQIK+FG DN RKKIKEDL
Sbjct: 77  QAYFFVKLSFIVNDRQSKYYLKEISTDYLYTLLSGPPMGDIVQIKSFGMDNFRKKIKEDL 136

Query: 122 NSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKE 173
           N +LGSQFIS+VLI+ELNYLSI D+R NC  L    S+LM QK SL++K K+
Sbjct: 137 NLKLGSQFISDVLINELNYLSIADIRLNCFHLSDKESNLMAQKKSLLDKAKD 188



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|163758044|ref|ZP_02165132.1| hypothetical protein HPDFL43_00425 [Hoeflea phototrophica DFL-43] Length = 185 Back     alignment and organism information
>gi|190890394|ref|YP_001976936.1| hypothetical protein RHECIAT_CH0000769 [Rhizobium etli CIAT 652] Length = 179 Back     alignment and organism information
>gi|218509489|ref|ZP_03507367.1| hypothetical protein RetlB5_19254 [Rhizobium etli Brasil 5] Length = 179 Back     alignment and organism information
>gi|209547958|ref|YP_002279875.1| hypothetical protein Rleg2_0350 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 179 Back     alignment and organism information
>gi|110632628|ref|YP_672836.1| hypothetical protein Meso_0267 [Mesorhizobium sp. BNC1] Length = 161 Back     alignment and organism information
>gi|116250512|ref|YP_766350.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 179 Back     alignment and organism information
>gi|241203136|ref|YP_002974232.1| hypothetical protein Rleg_0382 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 179 Back     alignment and organism information
>gi|86356342|ref|YP_468234.1| hypothetical protein RHE_CH00691 [Rhizobium etli CFN 42] Length = 179 Back     alignment and organism information
>gi|222084897|ref|YP_002543426.1| hypothetical protein Arad_0927 [Agrobacterium radiobacter K84] Length = 178 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLAST against CDD database part II

No hit with e-value below 0.005

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 176 hypothetical protein CLIBASIA_01970 [Candidatus Liberib
PRK12785167 fliL flagellar basal body-associated protein FliL; Revi 99.88
PRK07021159 fliL flagellar basal body-associated protein FliL; Revi 99.86
pfam03748145 FliL Flagellar basal body-associated protein FliL. This 99.84
PRK07718142 fliL flagellar basal body-associated protein FliL; Revi 99.83
PRK05696168 fliL flagellar basal body-associated protein FliL; Revi 99.81
COG1580159 FliL Flagellar basal body-associated protein [Cell moti 99.74
PRK08455180 fliL flagellar basal body-associated protein FliL; Revi 99.82
PRK05697135 flagellar basal body-associated protein FliL-like prote 99.56
PRK06654177 fliL flagellar basal body-associated protein FliL; Revi 98.68
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>pfam03748 FliL Flagellar basal body-associated protein FliL Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 90.00

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

No hit with probability higher than 90.00