HHsearch alignment for GI: 254780507 and conserved domain: PRK05697
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated.
Probab=99.56 E-value=8e-14 Score=99.91 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=85.2
Q ss_pred CCCCCCCCCCC-EEEEEECCCCEEEEEEEEEEEEECHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHH
Q ss_conf 67754111585-078764068623699999999827579976---44399999999998458234530301369899999
Q gi|254780507|r 40 IKNTNIIKSEL-VSIPSVSNGVLQAYFLVKLSFIVNDSQERS---YLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRK 115 (176)
Q Consensus 40 ~~~~eyVkl~~-i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~---~~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~ 115 (176)
T Consensus 28 ~~~~~Y~~l~P~fV~N~~~~g~rlrylqv~v~Lmv~d~~~~~~le~H~PlIR~~li~lls~qt~~~l~t~eGr--e~Lr~ 105 (135)
T PRK05697 28 APKYAYYGLEPDIVTNYISDGKKLGYVKIDVELMVKDPDDLAAVEHHDPLIRNALVELLGQQTEDKVKSLTGR--EEIRQ 105 (135)
T ss_pred CCCEEEEECCCCEEEECCCCCCCEEEEEEEEEEEECCHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHCCHHHH--HHHHH
T ss_conf 8855899658997996578986046999999999878756899997076899999999854998796598789--99999
Q ss_pred HHHHHHHHHH----CCCCEEEEEEEEECC
Q ss_conf 9999999995----867145523201113
Q gi|254780507|r 116 KIKEDLNSRL----GSQFISEVLIDELNY 140 (176)
Q Consensus 116 ~I~~~vN~~l----G~~~V~DVLi~~f~y 140 (176)
T Consensus 106 e~l~~vn~~l~~etG~~~Ve~VlFT~fV~ 134 (135)
T PRK05697 106 ECLKQVNELLEQETGKPLVVDLLFTKYLY 134 (135)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCEE
T ss_conf 99999999998631866434675000344