HHsearch alignment for GI: 254780507 and conserved domain: PRK08455
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=99.82 E-value=2.3e-19 Score=131.89 Aligned_cols=92 Identities=15% Similarity=0.238 Sum_probs=80.2
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 1115850787640686236999999998275799764---4399999999998458234530301369899999999999
Q gi|254780507|r 45 IIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSY---LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDL 121 (176)
Q Consensus 45 yVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~~---~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~v 121 (176)
T Consensus 84 ~~~l~~f~v-Nl~~~~~~rylq~~i~l~~~~~~~~~~~~~~~p~ird~ii~~ls~~~~~~l~~~~G--k~~Lr~ei~~~i 160 (180)
T PRK08455 84 MYPLDPFTV-NLLSQSGRRYLKTSISLELSNELLKPELDKKDPVIRDTIIRILSSKTVEEVSTNKG--KERLKDEIVGKL 160 (180)
T ss_pred CCCCCCEEE-ECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHH--HHHHHHHHHHHH
T ss_conf 545677799-77789986389999999986888899999866999999999996499989509778--999999999999
Q ss_pred HHHHCCCCEEEEEEEEEC
Q ss_conf 999586714552320111
Q gi|254780507|r 122 NSRLGSQFISEVLIDELN 139 (176)
Q Consensus 122 N~~lG~~~V~DVLi~~f~ 139 (176)
T Consensus 161 n~~l~~~~V~~V~Ft~fV 178 (180)
T PRK08455 161 NEFLIDGFIKNVFFTDFV 178 (180)
T ss_pred HHHHCCCCEEEEEEEEEE
T ss_conf 987367955799842417