Query gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 109 out of 111
Neff 6.2
Searched_HMMs 39220
Date Mon May 30 00:22:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780507.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12785 fliL flagellar basal 99.9 4.5E-22 1.2E-26 147.4 11.9 134 4-139 28-165 (167)
2 PRK07021 fliL flagellar basal 99.9 1.4E-20 3.5E-25 138.9 14.5 134 4-139 17-157 (159)
3 pfam03748 FliL Flagellar basal 99.8 1.7E-19 4.3E-24 132.6 14.7 136 2-140 4-144 (145)
4 PRK07718 fliL flagellar basal 99.8 1.9E-19 4.9E-24 132.3 13.9 133 1-139 5-140 (142)
5 PRK08455 fliL flagellar basal 99.8 2.3E-19 5.8E-24 131.9 12.3 92 45-139 84-178 (180)
6 PRK05696 fliL flagellar basal 99.8 1.7E-18 4.4E-23 126.8 14.6 133 4-139 21-166 (168)
7 COG1580 FliL Flagellar basal b 99.7 1.2E-16 3E-21 116.2 14.2 134 4-140 21-158 (159)
8 PRK05697 flagellar basal body- 99.6 8E-14 2E-18 99.9 12.1 99 40-140 28-134 (135)
9 PRK06654 fliL flagellar basal 98.7 7.8E-08 2E-12 65.4 7.3 90 45-141 81-175 (177)
10 cd03400 Band_7_1 A subgroup of 81.6 4.3 0.00011 20.8 10.9 93 53-150 14-120 (124)
11 PRK04424 fatty acid biosynthes 75.1 1.8 4.5E-05 23.0 1.8 43 83-125 19-62 (185)
12 PRK09379 membrane-bound transc 74.5 7.2 0.00018 19.5 5.0 58 4-61 7-71 (303)
13 PRK12757 cell division protein 55.6 3.7 9.5E-05 21.1 0.3 76 4-79 1-88 (249)
14 PRK09859 multidrug efflux syst 53.4 19 0.00047 17.1 5.6 63 3-74 5-69 (385)
15 PRK03195 hypothetical protein; 51.6 20 0.00051 16.9 3.8 30 110-139 137-166 (187)
16 pfam11159 DUF2939 Protein of u 51.0 14 0.00035 17.9 2.6 44 83-128 12-56 (95)
17 pfam02530 Porin_2 Porin subfam 48.7 22 0.00056 16.7 4.4 31 40-71 31-69 (378)
18 pfam12072 DUF3552 Domain of un 46.3 22 0.00056 16.7 3.0 24 4-27 2-25 (201)
19 pfam05258 DUF721 Protein of un 43.7 27 0.00068 16.2 3.3 26 110-135 63-88 (88)
20 PRK00111 hypothetical protein; 42.3 28 0.00071 16.1 3.9 29 110-138 128-156 (178)
21 pfam10144 SMP_2 Bacterial viru 39.1 31 0.0008 15.8 5.3 23 48-70 125-147 (210)
22 PRK10927 essential cell divisi 37.3 16 0.00041 17.5 1.2 77 4-80 36-123 (319)
23 PRK01294 lipase chaperone; Pro 36.7 34 0.00088 15.6 3.8 23 1-23 4-26 (339)
24 PRK11246 hypothetical protein; 36.7 34 0.00088 15.6 2.9 24 49-72 126-149 (214)
25 TIGR01769 GGGP geranylgeranylg 36.4 14 0.00035 17.9 0.7 50 13-62 144-193 (212)
26 pfam07423 DUF1510 Protein of u 31.9 41 0.0011 15.1 2.6 28 1-28 14-41 (214)
27 KOG2146 consensus 31.0 22 0.00056 16.7 1.0 40 104-146 36-75 (354)
28 PRK01844 hypothetical protein; 30.5 44 0.0011 15.0 2.6 24 4-27 6-29 (72)
29 TIGR00943 2a6301s02 monovalent 30.4 38 0.00096 15.3 2.1 23 2-24 44-66 (107)
30 PHA02047 phage lambda Rz1-like 29.7 31 0.00078 15.9 1.6 34 1-34 1-34 (109)
31 COG0650 HyfC Formate hydrogenl 28.8 9.4 0.00024 18.8 -1.2 38 110-148 24-61 (309)
32 pfam01145 Band_7 SPFH domain / 27.9 49 0.0012 14.7 10.5 91 54-150 52-155 (177)
33 PRK03598 hypothetical protein; 26.2 52 0.0013 14.5 4.0 27 1-28 1-27 (331)
34 pfam06365 CD34_antigen CD34/Po 24.3 57 0.0014 14.3 2.8 41 3-47 104-145 (202)
35 COG3765 WzzB Chain length dete 24.2 51 0.0013 14.6 1.9 40 3-42 34-73 (347)
36 TIGR00174 miaA tRNA delta(2)-i 23.7 33 0.00083 15.7 0.8 78 55-133 125-220 (307)
37 PRK06770 hypothetical protein; 22.9 61 0.0015 14.2 3.4 33 2-34 5-37 (185)
38 cd06159 S2P-M50_PDZ_Arch Uncha 22.7 61 0.0016 14.1 3.3 20 6-25 60-79 (263)
39 TIGR01942 pcnB poly(A) polymer 22.6 32 0.00082 15.7 0.6 46 65-110 186-242 (448)
40 PRK11556 multidrug efflux syst 22.5 62 0.0016 14.1 7.8 17 127-143 203-219 (415)
41 pfam05961 Chordopox_A13L Chord 21.8 64 0.0016 14.0 4.7 23 1-24 1-24 (68)
42 pfam05482 Serendipity_A Serend 21.3 48 0.0012 14.7 1.3 35 83-121 245-279 (549)
43 pfam11084 DUF2621 Protein of u 21.2 66 0.0017 14.0 3.0 33 1-33 7-39 (141)
No 1
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=99.88 E-value=4.5e-22 Score=147.45 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCEEEEEEEEEEEEECHHHHHHH-
Q ss_conf 9999999999999999999740235444445563456775411158507876406-86236999999998275799764-
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSN-GVLQAYFLVKLSFIVNDSQERSY- 81 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl~~i~VPvI~d-g~v~~yv~~~l~~eV~~~~~~~~- 81 (176)
+|++++++++.++|++||++........+..+.+....++.|+.+++|+|++-.+ |...+|+++++++|+.+.+..+.
T Consensus 28 Iii~~~vlll~gggg~~f~~~~~~~~~~~~~~~~~~~~~~~f~~l~~fvVNL~~~~g~r~ryLk~~i~Lev~~~~~~~~~ 107 (167)
T PRK12785 28 IIAAAAVLLLGGGGGGWFFFFRGHGADEHHAEAAPKVKPPVFVDVPDMLVNLAGDPGERVQYLKVKVVLEVKDEKQVEQI 107 (167)
T ss_pred EEHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHH
T ss_conf 61999999997311401466426887655556677789863761488599878999985359999999998888789999
Q ss_pred --HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf --4399999999998458234530301369899999999999999586714552320111
Q gi|254780507|r 82 --LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELN 139 (176)
Q Consensus 82 --~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~ 139 (176)
..|+|+|.++.+|+++++.|+..++. ..+||++|++++|..+|.+.|+|||||+|-
T Consensus 108 ~~~~P~IrD~i~~~L~~~~~~dL~~~~G--k~~Lr~ell~rin~~l~~~~V~~VlFtefV 165 (167)
T PRK12785 108 KPLMPRVTDLFQTYLRELRSSDLNGSAG--LFRLKEELTRRVNVALAPAQVNAVLFKEVV 165 (167)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHCHHH--HHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 8753679999999997189989709377--999999999999854178823599898638
No 2
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=99.86 E-value=1.4e-20 Score=138.91 Aligned_cols=134 Identities=14% Similarity=0.155 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHHHH--
Q ss_conf 999999999999999999974023544444556345677541115850787640686236999999998275799764--
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSY-- 81 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~~-- 81 (176)
++++.+.+.+.++||+||++....+...+.++++.+...+.|+++++|+|++.++++.++|+++.+++++.++...+.
T Consensus 17 ii~~~~lll~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~pvf~~l~~f~VNL~~~~~~~ryLqv~i~L~~~d~~~~~~l~ 96 (159)
T PRK07021 17 ILLILITLAAAAGAGYSYWLSKQGAAHAAAKAEPAPPPAPVFFPLETFTVNLQPDDDADRVLYIGLTLRLKDEATRERLK 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCEEEEEEEEEEECCHHHHHHHH
T ss_conf 89999999999999999995477666666666677889875773475179713899864599999999976877898998
Q ss_pred -HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC----CEEEEEEEEEC
Q ss_conf -43999999999984582345303013698999999999999995867----14552320111
Q gi|254780507|r 82 -LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQ----FISEVLIDELN 139 (176)
Q Consensus 82 -~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~----~V~DVLi~~f~ 139 (176)
..|.|||.++.+|+++++.|+++.+. -..||++|++++|+.|..+ .|.|||||+|.
T Consensus 97 ~~~P~Ird~ll~lls~~~~~dL~t~eG--k~~L~~ei~~~vn~~l~~~~~~~~V~~VlFT~FV 157 (159)
T PRK07021 97 EYLPEVRSRLLLLLSRKHAAELATEEG--KQKLAAEIKETLEQPLVPGQPKQVVTDVLFTAFI 157 (159)
T ss_pred HCCHHHHHHHHHHHHCCCHHHHCCHHH--HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 607478999999985499889649889--9999999999999987456888834589214406
No 3
>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.
Probab=99.84 E-value=1.7e-19 Score=132.62 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHH
Q ss_conf 999999999999999999999740235444445--563456775411158507876406862369999999982757997
Q gi|254780507|r 2 LKFLFSGIWISVVTLISFYMLFLRSMDTMVENH--VPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQER 79 (176)
Q Consensus 2 iklii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~--~~~~~~~~~eyVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~ 79 (176)
+.+++++++++++++|++||++.+...+..... +++....++.|+++++|+|+ +.|++..+|++++++++++++...
T Consensus 4 ~i~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vN-l~~~~~~r~l~~~i~l~~~~~~~~ 82 (145)
T pfam03748 4 LILLILGLLLLAAGGGGGFYFLLKGGPEEAAAAEAAEPAAPAPAAYVPLEPFVVN-LADDGGTRYLKISIALEVRDPKAA 82 (145)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEE-CCCCCCCEEEEEEEEEEECCHHHH
T ss_conf 5258999999999999999885037886555566677788999648864988998-268996369999999997688789
Q ss_pred HH---HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 64---43999999999984582345303013698999999999999995867145523201113
Q gi|254780507|r 80 SY---LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNY 140 (176)
Q Consensus 80 ~~---~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y 140 (176)
+. ..|+|+|.++.+|++++..|+..++. ...||++|++++|+.++.+.|+||||++|..
T Consensus 83 ~~~~~~~p~Ird~ii~~l~~~~~~dl~~~~g--~~~Lk~~l~~~in~~l~~~~V~~V~ft~fVv 144 (145)
T pfam03748 83 EELEKHMPLIRDAILMLLSSKTAEDLSTPEG--KEKLKEELLERINEVLLEGEVEDVLFTSFVI 144 (145)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCHHHCCCHHH--HHHHHHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 9888626333799999986588212149337--9999999999999873758546998885086
No 4
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=99.83 E-value=1.9e-19 Score=132.32 Aligned_cols=133 Identities=11% Similarity=0.211 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHHH
Q ss_conf 99999999999999999999997402354444455634567754111585078764068623699999999827579976
Q gi|254780507|r 1 MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERS 80 (176)
Q Consensus 1 Miklii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~ 80 (176)
|++++++.+.+.++.++++||++.....+..+..++....-....+.++.|+| |+.|+ +|+++++.+++++++..+
T Consensus 5 li~Imiiil~~l~l~G~~a~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~e~~t-NL~~~---rylkv~i~le~~~~~~~~ 80 (142)
T PRK07718 5 LIKIMLIILIVIALLGTAALVVVIGSSGEEKQSGEPTIDEIVESSVEVPEITT-NLKSG---NFIRISFKIETDSKKAKE 80 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEE-ECCCC---CEEEEEEEEEECCHHHHH
T ss_conf 06699999999999999987246435775647888980330355401585168-75999---679999999988988997
Q ss_pred HHH---HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 443---99999999998458234530301369899999999999999586714552320111
Q gi|254780507|r 81 YLK---EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELN 139 (176)
Q Consensus 81 ~~~---p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~ 139 (176)
+++ |.|+|.+++.|+++++.|+...+. ..+||++|++++|+.|+++.|.+|||++|.
T Consensus 81 El~~r~pqIrD~Ii~~Ls~kt~~dl~~~~G--k~~Lk~ei~~~iN~~l~~G~V~~VyfT~fV 140 (142)
T PRK07718 81 ELEKRDFQVKDIIISELAEMNAEDLEGKKG--LEKLKEQLKEKINNLMQEGKVKKVYITSFI 140 (142)
T ss_pred HHHHCCHHHHHHHHHHHHCCCHHHHCCHHH--HHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 766514256999999997499979459778--999999999999864678946999988766
No 5
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=99.82 E-value=2.3e-19 Score=131.89 Aligned_cols=92 Identities=15% Similarity=0.238 Sum_probs=80.2
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 1115850787640686236999999998275799764---4399999999998458234530301369899999999999
Q gi|254780507|r 45 IIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSY---LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDL 121 (176)
Q Consensus 45 yVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~~---~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~v 121 (176)
+.++++|+| |+.+...++|+++++++++.++..... ..|.|||.++.+|+++++.|++..+. -..||++|++++
T Consensus 84 ~~~l~~f~v-Nl~~~~~~rylq~~i~l~~~~~~~~~~~~~~~p~ird~ii~~ls~~~~~~l~~~~G--k~~Lr~ei~~~i 160 (180)
T PRK08455 84 MYPLDPFTV-NLLSQSGRRYLKTSISLELSNELLKPELDKKDPVIRDTIIRILSSKTVEEVSTNKG--KERLKDEIVGKL 160 (180)
T ss_pred CCCCCCEEE-ECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHH--HHHHHHHHHHHH
T ss_conf 545677799-77789986389999999986888899999866999999999996499989509778--999999999999
Q ss_pred HHHHCCCCEEEEEEEEEC
Q ss_conf 999586714552320111
Q gi|254780507|r 122 NSRLGSQFISEVLIDELN 139 (176)
Q Consensus 122 N~~lG~~~V~DVLi~~f~ 139 (176)
|..|+.+.|.+||||+|.
T Consensus 161 n~~l~~~~V~~V~Ft~fV 178 (180)
T PRK08455 161 NEFLIDGFIKNVFFTDFV 178 (180)
T ss_pred HHHHCCCCEEEEEEEEEE
T ss_conf 987367955799842417
No 6
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=99.81 E-value=1.7e-18 Score=126.79 Aligned_cols=133 Identities=12% Similarity=0.176 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCCCCCCCCCCCC-CCEEEEEECCCCEEEEEEEEEEEEECHHH
Q ss_conf 999999999999999999974023544444-----556345677541115-85078764068623699999999827579
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVEN-----HVPPLAIKNTNIIKS-ELVSIPSVSNGVLQAYFLVKLSFIVNDSQ 77 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~-----~~~~~~~~~~eyVkl-~~i~VPvI~dg~v~~yv~~~l~~eV~~~~ 77 (176)
++++++++.+.++|++||++.......... ++.+.+..+..|+.+ ++|+| |+.+++.++|+++++++++.++.
T Consensus 21 ii~~~vlll~ggggg~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~F~V-NL~~~~~~ryLqv~i~L~~~d~~ 99 (168)
T PRK05696 21 IIVVGVLLALGGGGAAWFFMGSSDPAEAAAAEAAAAAAAAPVPPALYVPMPRPFVF-NVPGNGRDRLVQIKVQLMVRGSA 99 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCCCCCCEEEEEEEEEEECCHH
T ss_conf 79999999999999999995588754444444455667788777521357866388-61689974699999999988876
Q ss_pred HHHH---HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH----CCCCEEEEEEEEEC
Q ss_conf 9764---43999999999984582345303013698999999999999995----86714552320111
Q gi|254780507|r 78 ERSY---LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRL----GSQFISEVLIDELN 139 (176)
Q Consensus 78 ~~~~---~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~l----G~~~V~DVLi~~f~ 139 (176)
.... ..|.|||.++.+|+++++.|+++.+.. .+||+++++++|++| |.+.|.+||||+|.
T Consensus 100 ~~~~i~~~~P~IR~~ll~lls~~~~~~l~t~eGk--~~Lr~e~~~~in~~l~~~~g~~~V~~VlFT~FV 166 (168)
T PRK05696 100 DEELAKKHIPLIENALLMTFSGADVDQLSTPAGK--EELRQKALASVQETLQKVTGKPVVEKVLFTGFV 166 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHH--HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCE
T ss_conf 8999987558899999999962899896098789--999999999999997631388751278530236
No 7
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=99.74 E-value=1.2e-16 Score=116.21 Aligned_cols=134 Identities=15% Similarity=0.188 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHHHHH-
Q ss_conf 9999999999999999999740235444445563456775411158507876406862369999999982757997644-
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYL- 82 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~~~- 82 (176)
+|++.+++.++++++.+|++.+......+..+.+.+.....|..+++|++ |+.++...+|+.+.+.|++++++..+++
T Consensus 21 ~liv~ivl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-Nl~~~~~~~~v~i~i~l~~~n~~~~~el~ 99 (159)
T COG1580 21 LLIVLIVLLALAGAGYFFWFGSKSEDAEAESAQTPVEILAYYYLLEEFTT-NLLDGPKDRYVKIAITLEVANKALLEELE 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCEEE-ECCCCCCCEEEEEEEEEEECCHHHHHHHH
T ss_conf 79999999999988888753035654555666788875544652255045-62668874799999988608888999999
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEEEECC
Q ss_conf --3999999999984582345303013698999999999999995867-145523201113
Q gi|254780507|r 83 --KEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQ-FISEVLIDELNY 140 (176)
Q Consensus 83 --~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~-~V~DVLi~~f~y 140 (176)
.|.|+|.++.+|.+++..+++..+. .+.||.+|++++|..|..+ .|+|||+|+|.+
T Consensus 100 ~~~p~vrd~li~lfsskt~~eL~t~~G--ke~Lk~ei~~~in~~L~~g~~V~dV~fT~fii 158 (159)
T COG1580 100 EKKPEVRDALLMLFSSKTAAELSTPEG--KEKLKAEIKDRINTILKEGQVVKDVLFTNFII 158 (159)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCHH--HHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHC
T ss_conf 756899999999997178988368221--89999999999989984587267785551311
No 8
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=99.56 E-value=8e-14 Score=99.91 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=85.2
Q ss_pred CCCCCCCCCCC-EEEEEECCCCEEEEEEEEEEEEECHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHH
Q ss_conf 67754111585-078764068623699999999827579976---44399999999998458234530301369899999
Q gi|254780507|r 40 IKNTNIIKSEL-VSIPSVSNGVLQAYFLVKLSFIVNDSQERS---YLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRK 115 (176)
Q Consensus 40 ~~~~eyVkl~~-i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~---~~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~ 115 (176)
.+...|..++| |+++..++|+..||+++.+++++.+..... .+.|.|||.++.+|++++..++++++.. +.||+
T Consensus 28 ~~~~~Y~~l~P~fV~N~~~~g~rlrylqv~v~Lmv~d~~~~~~le~H~PlIR~~li~lls~qt~~~l~t~eGr--e~Lr~ 105 (135)
T PRK05697 28 APKYAYYGLEPDIVTNYISDGKKLGYVKIDVELMVKDPDDLAAVEHHDPLIRNALVELLGQQTEDKVKSLTGR--EEIRQ 105 (135)
T ss_pred CCCEEEEECCCCEEEECCCCCCCEEEEEEEEEEEECCHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHCCHHHH--HHHHH
T ss_conf 8855899658997996578986046999999999878756899997076899999999854998796598789--99999
Q ss_pred HHHHHHHHHH----CCCCEEEEEEEEECC
Q ss_conf 9999999995----867145523201113
Q gi|254780507|r 116 KIKEDLNSRL----GSQFISEVLIDELNY 140 (176)
Q Consensus 116 ~I~~~vN~~l----G~~~V~DVLi~~f~y 140 (176)
++.+++|+.+ |.+.|.||||++|-+
T Consensus 106 e~l~~vn~~l~~etG~~~Ve~VlFT~fV~ 134 (135)
T PRK05697 106 ECLKQVNELLEQETGKPLVVDLLFTKYLY 134 (135)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCEE
T ss_conf 99999999998631866434675000344
No 9
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=98.68 E-value=7.8e-08 Score=65.41 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=70.2
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEEEEEEC--HHHHHHHHH---HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 111585078764068623699999999827--579976443---999999999984582345303013698999999999
Q gi|254780507|r 45 IIKSELVSIPSVSNGVLQAYFLVKLSFIVN--DSQERSYLK---EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKE 119 (176)
Q Consensus 45 yVkl~~i~VPvI~dg~v~~yv~~~l~~eV~--~~~~~~~~~---p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~ 119 (176)
|--.+.|-+ +-+|-....|+ +++.+--+ +..+..++. -+++|-+..++.+++..++++ =+++|.+||.
T Consensus 81 Y~~~~e~r~-nTaD~~~at~V-v~~aLGY~~n~k~l~~EL~~R~v~lkD~i~~yfs~kT~~ELrn-----e~qiK~EIk~ 153 (177)
T PRK06654 81 YESIDEIRG-NTADAPPKTFV-VKLALGYAENNVNILQELGRQKVRLKDIIREYFSQRTGQEIKN-----ESQIKAEIKA 153 (177)
T ss_pred HHHCCHHCC-CCCCCCCCEEE-EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_conf 431133104-55667872189-9987424678877999997648589999999984510998751-----8999999999
Q ss_pred HHHHHHCCCCEEEEEEEEECCC
Q ss_conf 9999958671455232011136
Q gi|254780507|r 120 DLNSRLGSQFISEVLIDELNYL 141 (176)
Q Consensus 120 ~vN~~lG~~~V~DVLi~~f~y~ 141 (176)
++|..|..+.|+||++|||+-+
T Consensus 154 ~IN~IL~~gkIkdI~FTq~di~ 175 (177)
T PRK06654 154 RINSILRNGEIKEIALTQIDIF 175 (177)
T ss_pred HHHHHHHCCCEEEEEEEEEEEE
T ss_conf 9998874286006987665430
No 10
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=81.64 E-value=4.3 Score=20.76 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=63.8
Q ss_pred EEEECCCCEEEEEEEEEEEEECHHHHHHH------------HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 87640686236999999998275799764------------439999999999845823453030136989999999999
Q gi|254780507|r 53 IPSVSNGVLQAYFLVKLSFIVNDSQERSY------------LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKED 120 (176)
Q Consensus 53 VPvI~dg~v~~yv~~~l~~eV~~~~~~~~------------~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~ 120 (176)
+-+++.++..=-+-+.+.|.++++++... ..|.+++.+=......+..|+=..++ +.+..+|++.
T Consensus 14 ~~vlskdgl~v~~dvtV~Y~v~~~~~~~l~~~~G~~y~~~iI~p~vrs~~R~v~~~y~a~elys~kR---~~i~~~I~~~ 90 (124)
T cd03400 14 IDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKR---KEIESAIKKE 90 (124)
T ss_pred EEEECCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHHHHH
T ss_conf 8878789978999999999998888999999849777773521789999999973378999988579---9999999999
Q ss_pred HHHHHCCC--CEEEEEEEEECCCCHHHHHHHH
Q ss_conf 99995867--1455232011136999997424
Q gi|254780507|r 121 LNSRLGSQ--FISEVLIDELNYLSIVDMRSNC 150 (176)
Q Consensus 121 vN~~lG~~--~V~DVLi~~f~y~~k~~ir~~~ 150 (176)
+.+.|... .|.+|+|.++++= ++++.+.
T Consensus 91 l~~~l~~~gi~ve~VlIr~I~lP--~~~~~AI 120 (124)
T cd03400 91 LIEEFVGDGLILEEVLLRNIKLP--DQIADAI 120 (124)
T ss_pred HHHHHHHCCEEEEEEEEEEEECC--HHHHHHH
T ss_conf 99988638959999999975289--8999999
No 11
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=75.09 E-value=1.8 Score=22.99 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHH-CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 399999999998458234530-3013698999999999999995
Q gi|254780507|r 83 KEIATDYLYTLLSGPPMGDFV-QIKAFGFDNLRKKIKEDLNSRL 125 (176)
Q Consensus 83 ~p~i~D~~~~~L~~~~~~D~~-~~~~~~l~~lk~~I~~~vN~~l 125 (176)
.||++|+-+...++.+...++ +.--.++|.||++||.-..+..
T Consensus 19 nPF~TDeeLa~~f~VSiqTIRLDR~~L~IPElReRik~vAe~~~ 62 (185)
T PRK04424 19 NPFITDEELAEKFGVSIQTIRLDRMELSIPELRERIKHVAEKNY 62 (185)
T ss_pred CCCCCHHHHHHHCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89987799998609577788822143298789999999999747
No 12
>PRK09379 membrane-bound transcriptional regulator LytR; Provisional
Probab=74.45 E-value=7.2 Score=19.50 Aligned_cols=58 Identities=21% Similarity=0.089 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-----CCCC--CCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 9999999999999999999740235-----4444--45563456775411158507876406862
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMD-----TMVE--NHVPPLAIKNTNIIKSELVSIPSVSNGVL 61 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~-----~~~~--~~~~~~~~~~~eyVkl~~i~VPvI~dg~v 61 (176)
++++++.++++.++++|+.+.+... .... ...+....++.+.-+.+||+|-+++-+..
T Consensus 7 ~~i~~v~~vlll~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~niLllG~D~r 71 (303)
T PRK09379 7 FWILGIIGVLIIGGGIYAYNVYSSVSSTLDEVHEPLKRDKKRKREEVKISKSEPISILLMGVDER 71 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 36999999999999999999999987767653255556654434445446799769999984599
No 13
>PRK12757 cell division protein FtsN; Provisional
Probab=55.59 E-value=3.7 Score=21.14 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------CCCCCCCCCC-CCC--EEEEEECCCCEEEEEEEEEEE
Q ss_conf 9999999999999999999740235444445563---------4567754111-585--078764068623699999999
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVENHVPP---------LAIKNTNIIK-SEL--VSIPSVSNGVLQAYFLVKLSF 71 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~---------~~~~~~eyVk-l~~--i~VPvI~dg~v~~yv~~~l~~ 71 (176)
||++++.+.++-+||.||......+.....+... .+.|--.|+| ||. +-||...+..-.+-+.-..+|
T Consensus 1 ~lalA~avvv~F~gGLyFit~~kp~~~~~~~~~~~~p~n~LPpKPEErWsYIKELEnRqvgV~~pteps~g~~~~~~~qL 80 (249)
T PRK12757 1 MVALAVALLVVFVGGLYFITHNKKEELPTLPNHDPRTGNGLPPKPEERWRYIKELENRQIGVPTPTEPSAGGEVNSKTQL 80 (249)
T ss_pred CCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 91028999999876441455678888865788788988889988056669998741156787688887777777752326
Q ss_pred EECHHHHH
Q ss_conf 82757997
Q gi|254780507|r 72 IVNDSQER 79 (176)
Q Consensus 72 eV~~~~~~ 79 (176)
+-+-..+.
T Consensus 81 T~EQrqlL 88 (249)
T PRK12757 81 TNEQRQLL 88 (249)
T ss_pred CHHHHHHH
T ss_conf 99999999
No 14
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=53.38 E-value=19 Score=17.11 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCEEEEEEEEEEEEEC
Q ss_conf 9999999999999999999974023544444556345677541115--85078764068623699999999827
Q gi|254780507|r 3 KFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKS--ELVSIPSVSNGVLQAYFLVKLSFIVN 74 (176)
Q Consensus 3 klii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl--~~i~VPvI~dg~v~~yv~~~l~~eV~ 74 (176)
|.+++.+.+|++.+.|| ...+. .+++++. .+...+.. ..+....-..|.+.-.-.+.|+++|.
T Consensus 5 ~~~li~ll~~~~lL~gC------~~~~~-~~~~~~~--p~V~v~~v~~~~~~~~~~~~G~v~~~~~~~l~~~Vs 69 (385)
T PRK09859 5 RKLLIPLLFCGAMLTAC------DDKSA-ENAAAMT--PEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVG 69 (385)
T ss_pred HHHHHHHHHHHHHHHCC------CCCCC-CCCCCCC--CCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECC
T ss_conf 67899999999999537------99976-8789999--814899986751015899879999628999981456
No 15
>PRK03195 hypothetical protein; Provisional
Probab=51.55 E-value=20 Score=16.94 Aligned_cols=30 Identities=7% Similarity=0.258 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 899999999999999586714552320111
Q gi|254780507|r 110 FDNLRKKIKEDLNSRLGSQFISEVLIDELN 139 (176)
Q Consensus 110 l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~ 139 (176)
|.-|..+|..++|+.+|.++|+.|-|.-=+
T Consensus 137 LRll~~qLl~ri~~~lG~gvV~~i~V~GP~ 166 (187)
T PRK03195 137 LRMMQSQLLAKIAAAVGNGVVTSLKITGPA 166 (187)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 999899999999987588846899997989
No 16
>pfam11159 DUF2939 Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.
Probab=50.97 E-value=14 Score=17.90 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 39999999999845823453030-13698999999999999995867
Q gi|254780507|r 83 KEIATDYLYTLLSGPPMGDFVQI-KAFGFDNLRKKIKEDLNSRLGSQ 128 (176)
Q Consensus 83 ~p~i~D~~~~~L~~~~~~D~~~~-~~~~l~~lk~~I~~~vN~~lG~~ 128 (176)
.|++ ++.++-.+-...|-... +..|+++||+.||+++|..+-..
T Consensus 12 sPy~--al~~l~~Ai~~~D~~~l~~~VDfpalR~sLK~Ql~~~~~~~ 56 (95)
T pfam11159 12 SPYL--ALYQLKQAARANDAAALSEYVDFPALRQSLKAQLTAALLAR 56 (95)
T ss_pred HHHH--HHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7999--99999999996489999987782999999999999999985
No 17
>pfam02530 Porin_2 Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.
Probab=48.73 E-value=22 Score=16.68 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=20.1
Q ss_pred CCCCCCCCCCC------EEEEEECCC--CEEEEEEEEEEE
Q ss_conf 67754111585------078764068--623699999999
Q gi|254780507|r 40 IKNTNIIKSEL------VSIPSVSNG--VLQAYFLVKLSF 71 (176)
Q Consensus 40 ~~~~eyVkl~~------i~VPvI~dg--~v~~yv~~~l~~ 71 (176)
+||.|||+.-. |-+| -.|. ++.||+++.+.+
T Consensus 31 PEpvEYVrVCdaYGaGffYIP-GTeTCLkigGyvR~d~~~ 69 (378)
T pfam02530 31 PEPVEYVRVCDAYGAGYFYIP-GTETCLKIGGYVRADVGF 69 (378)
T ss_pred CCCCCEEEECCCCCCCCCCCC-CCHHEEEECCEEEEEEEC
T ss_conf 776325898666789700768-762204644689999863
No 18
>pfam12072 DUF3552 Domain of unknown function (DUF3552). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important.
Probab=46.29 E-value=22 Score=16.69 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999974023
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSM 27 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~ 27 (176)
+|++++..++++++.+||...+..
T Consensus 2 ~Ii~~i~~~~iG~~~G~~~~~~~~ 25 (201)
T pfam12072 2 IIILAIIALVVGFAIGYFVRKSIA 25 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 239999999999999999999999
No 19
>pfam05258 DUF721 Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.
Probab=43.69 E-value=27 Score=16.22 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 89999999999999958671455232
Q gi|254780507|r 110 FDNLRKKIKEDLNSRLGSQFISEVLI 135 (176)
Q Consensus 110 l~~lk~~I~~~vN~~lG~~~V~DVLi 135 (176)
|.-.+.+|.+++|+.+|...|+++=|
T Consensus 63 L~~~~~~Il~~ln~~~g~~~v~~I~~ 88 (88)
T pfam05258 63 LRYQKPELLERLNERLGEEAVRRIRF 88 (88)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99989999999998859674204179
No 20
>PRK00111 hypothetical protein; Provisional
Probab=42.32 E-value=28 Score=16.09 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 89999999999999958671455232011
Q gi|254780507|r 110 FDNLRKKIKEDLNSRLGSQFISEVLIDEL 138 (176)
Q Consensus 110 l~~lk~~I~~~vN~~lG~~~V~DVLi~~f 138 (176)
|.-|..+|..++|+++|.++|.++=|.-=
T Consensus 128 LRlL~~~LL~~I~~~lG~~vV~~I~V~GP 156 (178)
T PRK00111 128 LRMMQRQILQVIAEKVGPNIITELRIFGP 156 (178)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 99999999999998838984689999898
No 21
>pfam10144 SMP_2 Bacterial virulence factor haemolysin. Members of this family of bacterial proteins are membrane proteins that effect the expression of haemolysin under anaerobic conditions.
Probab=39.11 E-value=31 Score=15.80 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.5
Q ss_pred CCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 58507876406862369999999
Q gi|254780507|r 48 SELVSIPSVSNGVLQAYFLVKLS 70 (176)
Q Consensus 48 l~~i~VPvI~dg~v~~yv~~~l~ 70 (176)
-.+++.|+.++++.-||+++++.
T Consensus 125 ~qQiVEPI~~~~~~~GFlRvTld 147 (210)
T pfam10144 125 NQQIVEPISGKNGPLGFLRVTLD 147 (210)
T ss_pred CCCEEEEECCCCCCEEEEEEEEC
T ss_conf 76558877179983578999971
No 22
>PRK10927 essential cell division protein; Provisional
Probab=37.33 E-value=16 Score=17.47 Aligned_cols=77 Identities=8% Similarity=-0.022 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--------CCCCCCCCC-CCC--EEEEEECCCCEEEEEEEEEEEE
Q ss_conf 99999999999999999997402354444455634--------567754111-585--0787640686236999999998
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPL--------AIKNTNIIK-SEL--VSIPSVSNGVLQAYFLVKLSFI 72 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~--------~~~~~eyVk-l~~--i~VPvI~dg~v~~yv~~~l~~e 72 (176)
++++++.+.++-+||+||......+.....++... +.|-=-|+| ||. +-|+.-.+..-.+-+.-.-+|+
T Consensus 36 ~~ala~avlv~FiGGLyFith~K~e~~~~l~~~~~~~ngLPPKPEErWrYIKELEnRq~gV~~Ptepsagg~v~~~~qLT 115 (319)
T PRK10927 36 MVAIAAAVLVTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEPSAGGEVKTPEQLT 115 (319)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999750047887058766775756677777899982788899999861588987898887778777702179
Q ss_pred ECHHHHHH
Q ss_conf 27579976
Q gi|254780507|r 73 VNDSQERS 80 (176)
Q Consensus 73 V~~~~~~~ 80 (176)
-+-..+.+
T Consensus 116 ~EQRQLLe 123 (319)
T PRK10927 116 PEQRQLLE 123 (319)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 23
>PRK01294 lipase chaperone; Provisional
Probab=36.68 E-value=34 Score=15.57 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999997
Q gi|254780507|r 1 MLKFLFSGIWISVVTLISFYMLF 23 (176)
Q Consensus 1 Miklii~gvwi~~Vtlga~Yf~~ 23 (176)
|-|..+.++..|++.++..|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (339)
T PRK01294 4 MRKVALYLIIGAAAVLAVWYWLG 26 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999999999806
No 24
>PRK11246 hypothetical protein; Provisional
Probab=36.66 E-value=34 Score=15.57 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCEEEEEEEEEEEE
Q ss_conf 850787640686236999999998
Q gi|254780507|r 49 ELVSIPSVSNGVLQAYFLVKLSFI 72 (176)
Q Consensus 49 ~~i~VPvI~dg~v~~yv~~~l~~e 72 (176)
.+++.|+.++++.-||+++++--.
T Consensus 126 qQiVEPI~~~~~~~GFlRiTlDt~ 149 (214)
T PRK11246 126 QQIVEPIAGKNGPLGYLRLTLDTH 149 (214)
T ss_pred CCEEEEECCCCCCEEEEEEEEEHH
T ss_conf 544776327999457899997436
No 25
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=36.39 E-value=14 Score=17.90 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 99999999997402354444455634567754111585078764068623
Q gi|254780507|r 13 VVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQ 62 (176)
Q Consensus 13 ~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl~~i~VPvI~dg~v~ 62 (176)
.=+|+|-|+++.|---.+..-.+.|-..+-..|+|-..-.+|+|-.|+++
T Consensus 144 ~Y~LAA~Y~G~~~vYLEAGSGAs~Pv~~e~i~~~k~~~~~I~LIVGGGIr 193 (212)
T TIGR01769 144 AYALAAKYLGFKLVYLEAGSGASEPVSPETISLVKKKISSIPLIVGGGIR 193 (212)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 99999987413512131057866678667999999854897277527758
No 26
>pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=31.90 E-value=41 Score=15.11 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999740235
Q gi|254780507|r 1 MLKFLFSGIWISVVTLISFYMLFLRSMD 28 (176)
Q Consensus 1 Miklii~gvwi~~Vtlga~Yf~~~~~~~ 28 (176)
||.=|+|||++.++.+.+.+.++.+...
T Consensus 14 ~vLNiaI~iV~llIiiva~~lf~~~~~~ 41 (214)
T pfam07423 14 RVLNIAIGIVVVLIIIVAYQLFFPSSPS 41 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHEEECCCCC
T ss_conf 4557999999999999766402358875
No 27
>KOG2146 consensus
Probab=30.97 E-value=22 Score=16.70 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHH
Q ss_conf 3013698999999999999995867145523201113699999
Q gi|254780507|r 104 QIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDM 146 (176)
Q Consensus 104 ~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y~~k~~i 146 (176)
++.+.+|+.||-=|..++|+.|| +.|=.|-+|.|---++-
T Consensus 36 DmsKvnleVlkPWItkrvneilg---fEDdVViefvynqLee~ 75 (354)
T KOG2146 36 DMSKVNLEVLKPWITKRVNEILG---FEDDVVIEFVYNQLEEA 75 (354)
T ss_pred CHHHCCHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH
T ss_conf 24330344533899887887636---64203599988777651
No 28
>PRK01844 hypothetical protein; Provisional
Probab=30.54 E-value=44 Score=14.98 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999974023
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSM 27 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~ 27 (176)
+|++++...++++.++||......
T Consensus 6 ~Ili~i~~li~G~~~GffiaRk~m 29 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 29
>TIGR00943 2a6301s02 monovalent cation:proton antiporter; InterPro: IPR005281 This family of proteins consists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterised systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.This family is specific for the phaB and mnhB proteins. .
Probab=30.40 E-value=38 Score=15.35 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999974
Q gi|254780507|r 2 LKFLFSGIWISVVTLISFYMLFL 24 (176)
Q Consensus 2 iklii~gvwi~~Vtlga~Yf~~~ 24 (176)
++++=+|+.+|.+|.-+.|+...
T Consensus 44 ~~l~~~Gl~la~~TGv~S~~lG~ 66 (107)
T TIGR00943 44 LRLIGIGLLLAVATGVGSWFLGK 66 (107)
T ss_pred HHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 89997999999994113335178
No 30
>PHA02047 phage lambda Rz1-like protein
Probab=29.65 E-value=31 Score=15.85 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999999999999999999740235444445
Q gi|254780507|r 1 MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENH 34 (176)
Q Consensus 1 Miklii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~ 34 (176)
|-+-|+.-+.+.++.+|+.|...+++..-.-++.
T Consensus 1 M~~Ti~~IL~L~V~~~~~~Y~~~~s~~~~~~A~N 34 (109)
T PHA02047 1 MPRTIVAILVLAVVALGASYGFVQSYRALGIAQN 34 (109)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9720578999999996120438999998736688
No 31
>COG0650 HyfC Formate hydrogenlyase subunit 4 [Energy production and conversion]
Probab=28.82 E-value=9.4 Score=18.83 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHH
Q ss_conf 899999999999999586714552320111369999974
Q gi|254780507|r 110 FDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRS 148 (176)
Q Consensus 110 l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y~~k~~ir~ 148 (176)
+..+.++++.|+++|-|.++.+. +.+=+-+++|+.+.-
T Consensus 24 ~~GI~RKv~ARiq~R~GPpi~Qp-~~d~lKll~Ke~v~P 61 (309)
T COG0650 24 LSGITRKVRARIQRRIGPPILQP-YYDTLKLLGKETVIP 61 (309)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHCCCCCC
T ss_conf 87699999999965899970078-999999961141167
No 32
>pfam01145 Band_7 SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain.
Probab=27.88 E-value=49 Score=14.71 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=61.8
Q ss_pred EEECCCCEEEEEEEEEEEEECHH-HHH----------HHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 76406862369999999982757-997----------6443999999999984582345303013698999999999999
Q gi|254780507|r 54 PSVSNGVLQAYFLVKLSFIVNDS-QER----------SYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLN 122 (176)
Q Consensus 54 PvI~dg~v~~yv~~~l~~eV~~~-~~~----------~~~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN 122 (176)
++...++..-.+.+.+.|-+++. ... ..+.+.+.+.+-..+...+..|+-.. -..+.+++++.+|
T Consensus 52 ~~~t~D~~~i~v~~~v~y~V~d~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~~~~~~~~~----r~~i~~~v~~~l~ 127 (177)
T pfam01145 52 EVLTKDGVPVTVDVTVQYRVEDPAKLVANYGGEDDLQELLRPLVRSALREVIARYTLDELLSN----REEIAQEVKEALQ 127 (177)
T ss_pred EEECCCCCEEEEEEEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHHHHH
T ss_conf 678699989999999999989999999871271139999999999999998604669999861----8999999999999
Q ss_pred HHHCCC--CEEEEEEEEECCCCHHHHHHHH
Q ss_conf 995867--1455232011136999997424
Q gi|254780507|r 123 SRLGSQ--FISEVLIDELNYLSIVDMRSNC 150 (176)
Q Consensus 123 ~~lG~~--~V~DVLi~~f~y~~k~~ir~~~ 150 (176)
+.+..- .+.+|.|++++| ++ ++....
T Consensus 128 ~~l~~~Gi~i~~v~i~~i~~-p~-~~~~ai 155 (177)
T pfam01145 128 EELDKYGIEIEDVQITDIDP-PP-EIAEAI 155 (177)
T ss_pred HHHHHCCCEEEEEEEEECCC-CH-HHHHHH
T ss_conf 99986698899999974489-99-999999
No 33
>PRK03598 hypothetical protein; Provisional
Probab=26.18 E-value=52 Score=14.53 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999740235
Q gi|254780507|r 1 MLKFLFSGIWISVVTLISFYMLFLRSMD 28 (176)
Q Consensus 1 Miklii~gvwi~~Vtlga~Yf~~~~~~~ 28 (176)
|=|.+++++.+.++.+.+.+++ +|+..
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~-~~~~~ 27 (331)
T PRK03598 1 MKKPVVIGLAVVALVAVGAGGW-WWYQS 27 (331)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHEEE
T ss_conf 9833899999999999999976-52140
No 34
>pfam06365 CD34_antigen CD34/Podocalyxin family. This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.
Probab=24.28 E-value=57 Score=14.32 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=18.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999-999999999999997402354444455634567754111
Q gi|254780507|r 3 KFLFSG-IWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIK 47 (176)
Q Consensus 3 klii~g-vwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVk 47 (176)
-++.+| +.+.++.++++||..+.-.- . +..+.--+++.||.
T Consensus 104 aLV~~gs~llLi~~~~~~Y~c~qRrs~---~-~~~qrlgEEl~~vE 145 (202)
T pfam06365 104 ALVTSGGFLLLIAAIYTGYCCHQRRSW---R-KDQQRLGEELQTVE 145 (202)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHCCC---C-CCCCCCCCCCEEEC
T ss_conf 528764799999999877875300067---7-66550366755520
No 35
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=24.18 E-value=51 Score=14.57 Aligned_cols=40 Identities=5% Similarity=-0.079 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999999999974023544444556345677
Q gi|254780507|r 3 KFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKN 42 (176)
Q Consensus 3 klii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~ 42 (176)
.+|++.+...++++|..|...+-|.+++.-.++...-.++
T Consensus 34 ~Ii~~~l~~~~~al~ys~l~~qkwts~aii~~P~~~~l~~ 73 (347)
T COG3765 34 TIIGIVLLFAAAALGYSFLAPQKWTSTAIITPPDVNQLGG 73 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCHHHHHH
T ss_conf 9999999999999999885420232223037875888888
No 36
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=23.67 E-value=33 Score=15.71 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=44.6
Q ss_pred EECCCCEEEEEEEEEEEEECHHHHHHHH--HHHHHHHHHHHHH--CCCHHHHHC------------C--CCCCHHHHHHH
Q ss_conf 6406862369999999982757997644--3999999999984--582345303------------0--13698999999
Q gi|254780507|r 55 SVSNGVLQAYFLVKLSFIVNDSQERSYL--KEIATDYLYTLLS--GPPMGDFVQ------------I--KAFGFDNLRKK 116 (176)
Q Consensus 55 vI~dg~v~~yv~~~l~~eV~~~~~~~~~--~p~i~D~~~~~L~--~~~~~D~~~------------~--~~~~l~~lk~~ 116 (176)
+...-...-++-..|. .||+....+.. ..+=+..++-.+| |++.+++.. . ...+.+.|.++
T Consensus 125 ~~~~~~g~~~ly~~L~-~~DP~~a~~ihPND~~R~~RaLEvfY~TG~~~Se~~~~~~~~L~~~~v~~~l~~~~~e~L~~R 203 (307)
T TIGR00174 125 ILAERQGKSFLYKELK-KVDPVAAAKIHPNDTRRVKRALEVFYATGKPISELFKEQKKELFYNIVQIGLAPLEREALHER 203 (307)
T ss_pred HHHHHCCHHHHHHHHH-HCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 9998549157888777-507698972177614789899998875078656664036665414667776300586456778
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999999586714552
Q gi|254780507|r 117 IKEDLNSRLGSQFISEV 133 (176)
Q Consensus 117 I~~~vN~~lG~~~V~DV 133 (176)
|.+|++.+|-.|.+.+|
T Consensus 204 I~~R~~~Ml~sGl~~Ev 220 (307)
T TIGR00174 204 IEQRVHEMLESGLLAEV 220 (307)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999986389999
No 37
>PRK06770 hypothetical protein; Provisional
Probab=22.88 E-value=61 Score=14.15 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999999999999999740235444445
Q gi|254780507|r 2 LKFLFSGIWISVVTLISFYMLFLRSMDTMVENH 34 (176)
Q Consensus 2 iklii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~ 34 (176)
+|++.+.+-+.+++.|.+|.+..+...+....+
T Consensus 5 ~kwi~ii~~~~Vl~ig~tygml~y~~~~~~~~~ 37 (185)
T PRK06770 5 FKWIGIIAGMAVLGIGVTYGMLYYAENPVKKAQ 37 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999999888777887507631543
No 38
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=22.68 E-value=61 Score=14.13 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999740
Q gi|254780507|r 6 FSGIWISVVTLISFYMLFLR 25 (176)
Q Consensus 6 i~gvwi~~Vtlga~Yf~~~~ 25 (176)
-+|+|+|.+.....++....
T Consensus 60 ~igI~~~~i~Mi~~~~~ll~ 79 (263)
T cd06159 60 NIGIPIAFVGMIFMLLLILL 79 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 53599999999999999999
No 39
>TIGR01942 pcnB poly(A) polymerase; InterPro: IPR010206 This entry describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell , . This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well . Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase.; GO: 0003723 RNA binding, 0004652 polynucleotide adenylyltransferase activity, 0006378 mRNA polyadenylation.
Probab=22.61 E-value=32 Score=15.74 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=34.3
Q ss_pred EEEEEEEEECHHHHHH----------HHHHHHHHHHHHHHH-CCCHHHHHCCCCCCH
Q ss_conf 9999999827579976----------443999999999984-582345303013698
Q gi|254780507|r 65 FLVKLSFIVNDSQERS----------YLKEIATDYLYTLLS-GPPMGDFVQIKAFGF 110 (176)
Q Consensus 65 v~~~l~~eV~~~~~~~----------~~~p~i~D~~~~~L~-~~~~~D~~~~~~~~l 110 (176)
+.+++.++++.+..+- .+.+|+.||++.+|+ |++.+-|..+.-+.|
T Consensus 186 ~~~kl~f~i~~~t~~pI~~s~~~L~~~p~aRlfeE~~KllfSG~~~~~f~~l~~~~l 242 (448)
T TIGR01942 186 FSSKLEFTIDEKTAEPIRESAPLLKKIPPARLFEEILKLLFSGKSAILFKMLSEYKL 242 (448)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 987722678989999999987862278977147889998604248999998605652
No 40
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=22.55 E-value=62 Score=14.12 Aligned_cols=17 Identities=24% Similarity=0.046 Sum_probs=12.9
Q ss_pred CCCEEEEEEEEECCCCH
Q ss_conf 67145523201113699
Q gi|254780507|r 127 SQFISEVLIDELNYLSI 143 (176)
Q Consensus 127 ~~~V~DVLi~~f~y~~k 143 (176)
+++|....++.-+|++.
T Consensus 203 ~GvV~~r~v~~G~~V~~ 219 (415)
T PRK11556 203 SGRVGLKQVDVGNQISS 219 (415)
T ss_pred CCEEEEEECCCCCEECC
T ss_conf 51577688589973777
No 41
>pfam05961 Chordopox_A13L Chordopoxvirus A13L protein. This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus.
Probab=21.80 E-value=64 Score=14.03 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 9999999999999999999-99974
Q gi|254780507|r 1 MLKFLFSGIWISVVTLISF-YMLFL 24 (176)
Q Consensus 1 Miklii~gvwi~~Vtlga~-Yf~~~ 24 (176)
||-.++. +-+|++-.|.- |..+.
T Consensus 1 MI~~llL-i~ICVavi~lIvYgiYn 24 (68)
T pfam05961 1 MIGDLIL-VIICVAIIGLIVYGIYN 24 (68)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 9178999-99999999999998851
No 42
>pfam05482 Serendipity_A Serendipity locus alpha protein (SRY-A). The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination.
Probab=21.30 E-value=48 Score=14.74 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 399999999998458234530301369899999999999
Q gi|254780507|r 83 KEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDL 121 (176)
Q Consensus 83 ~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~v 121 (176)
+.++-|++++++|. .+.|+. ++.++++|..++..-
T Consensus 245 E~~lNEaLLrLVF~-cf~D~e---~~sv~klR~~l~~~~ 279 (549)
T pfam05482 245 ETYLNEALLHLIFA-SLVDLE---NASIKRLRHALQSCE 279 (549)
T ss_pred HHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHCCC
T ss_conf 99999999999999-999876---615999999986336
No 43
>pfam11084 DUF2621 Protein of unknown function (DUF2621). This family is conserved in the Bacillaceae family. Several members are named as YneK. The function is not known.
Probab=21.24 E-value=66 Score=13.96 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999999999999999999974023544444
Q gi|254780507|r 1 MLKFLFSGIWISVVTLISFYMLFLRSMDTMVEN 33 (176)
Q Consensus 1 Miklii~gvwi~~Vtlga~Yf~~~~~~~~~~~~ 33 (176)
|..+++=++.+...+.-|+||++.-...+.+.+
T Consensus 7 ~~fI~~W~~~li~lm~IGGfFMFRKFLKrlPKe 39 (141)
T pfam11084 7 LWFILLWVVILISLMAIGGFFMFRKFLKRLPKE 39 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999986799999999868720
Done!