HHsearch alignment for GI: 254780507 and conserved domain: pfam03748

>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.

Probab=99.84  E-value=1.7e-19  Score=132.62  Aligned_cols=136  Identities=15%  Similarity=0.194  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHH
Q ss_conf             999999999999999999999740235444445--563456775411158507876406862369999999982757997
Q gi|254780507|r    2 LKFLFSGIWISVVTLISFYMLFLRSMDTMVENH--VPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQER   79 (176)
Q Consensus         2 iklii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~--~~~~~~~~~eyVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~   79 (176)
T Consensus         4 ~i~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vN-l~~~~~~r~l~~~i~l~~~~~~~~   82 (145)
T pfam03748         4 LILLILGLLLLAAGGGGGFYFLLKGGPEEAAAAEAAEPAAPAPAAYVPLEPFVVN-LADDGGTRYLKISIALEVRDPKAA   82 (145)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEE-CCCCCCCEEEEEEEEEEECCHHHH
T ss_conf             5258999999999999999885037886555566677788999648864988998-268996369999999997688789


Q ss_pred             HH---HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf             64---43999999999984582345303013698999999999999995867145523201113
Q gi|254780507|r   80 SY---LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNY  140 (176)
Q Consensus        80 ~~---~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y  140 (176)
T Consensus        83 ~~~~~~~p~Ird~ii~~l~~~~~~dl~~~~g--~~~Lk~~l~~~in~~l~~~~V~~V~ft~fVv  144 (145)
T pfam03748        83 EELEKHMPLIRDAILMLLSSKTAEDLSTPEG--KEKLKEELLERINEVLLEGEVEDVLFTSFVI  144 (145)
T ss_pred             HHHHHCCHHHHHHHHHHHHCCCHHHCCCHHH--HHHHHHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf             9888626333799999986588212149337--9999999999999873758546998885086