RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780507|ref|YP_003064920.1| hypothetical protein
CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
(176 letters)
>gnl|CDD|146406 pfam03748, FliL, Flagellar basal body-associated protein FliL.
This FliL protein controls the rotational direction of
the flagella during chemotaxis. FliL is a cytoplasmic
membrane protein associated with the basal body.
Length = 145
Score = 33.4 bits (77), Expect = 0.038
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 62 QAYFLVKLSFIVNDSQERSYLKE---IATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIK 118
Y + ++ V D + L++ + D + LLS D + G + L++++
Sbjct: 65 TRYLKISIALEVRDPKAAEELEKHMPLIRDAILMLLSSKTAEDLSTPE--GKEKLKEELL 122
Query: 119 EDLNSRLGSQFISEVLIDEL 138
E +N L + +VL
Sbjct: 123 ERINEVLLEGEVEDVLFTSF 142
>gnl|CDD|31393 COG1200, RecG, RecG-like helicase [DNA replication, recombination,
and repair / Transcription].
Length = 677
Score = 31.0 bits (70), Expect = 0.21
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 38 LAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGP 97
L++ + + IP +NG L A FL L F + ++Q+R +KEI D L S
Sbjct: 228 LSLLLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRV-IKEILAD----LASPV 282
Query: 98 PMGDFVQ 104
PM +Q
Sbjct: 283 PMNRLLQ 289
>gnl|CDD|147559 pfam05434, Tmemb_9, TMEM9. This family contains several
eukaryotic transmembrane proteins which are homologous
to human transmembrane protein 9. The TMEM9 gene
encodes a 183 amino-acid protein that contains an
N-terminal signal peptide, a single transmembrane
region, three potential N-glycosylation sites and three
conserved cys-rich domains in the N-terminus, but no
known functional domains. The protein is highly
conserved between species from Caenorhabditis elegans
to man and belongs to a novel family of transmembrane
proteins. The exact function of TMEM9 is unknown
although it has been found to be widely expressed and
localized to the late endosomes and lysosomes. Members
of this family contain pfam03128 repeats in their
N-terminal region.
Length = 149
Score = 29.1 bits (65), Expect = 0.70
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 9 IWISVVTLISFYMLFLRSMDTMVENHVP 36
I++S++ L+ YMLFL +D ++ V
Sbjct: 60 IYLSIIGLLLLYMLFLMLLDPLLRKRVK 87
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 27.0 bits (60), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 103 VQIKAFGFDNLRKKIKEDLNSRLGSQFISE 132
V ++A GF + RK + ED+ G Q I+E
Sbjct: 274 VAVRAPGFGDRRKAMLEDIAILTGGQVITE 303
>gnl|CDD|31620 COG1431, COG1431, Uncharacterized protein containing piwi/argonaute
domain [Translation, ribosomal structure and
biogenesis].
Length = 685
Score = 26.5 bits (58), Expect = 4.7
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 67 VKLSFIVNDSQERSYLKEIATDYLYTL-LSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRL 125
++S IV DS+ + LK +Y S V+ R K+K+DL +
Sbjct: 343 NEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWK-VEGLTLHVAGKRPKMKDDLTKII 401
Query: 126 GSQFISEVLIDEL 138
+ E+ E+
Sbjct: 402 KEIDVEELKKQEM 414
>gnl|CDD|48161 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis..
Length = 520
Score = 26.2 bits (58), Expect = 5.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 103 VQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDM 146
+KA GF + RK + ED+ G ISE L +L +++ D+
Sbjct: 271 CAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDL 314
>gnl|CDD|31768 COG1580, FliL, Flagellar basal body-associated protein [Cell
motility and secretion].
Length = 159
Score = 26.0 bits (57), Expect = 5.6
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)
Query: 11 ISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLS 70
+++ F+ +S D E+ P+ I + E + ++ +G Y + ++
Sbjct: 29 LALAGAGYFFWFGSKSEDAEAESAQTPVEILAYYYLLEEFTT--NLLDGPKDRYVKIAIT 86
Query: 71 FIVNDSQERSYLKE---IATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGS 127
V + L+E D L L S + + G + L+ +IK+ +N+ L
Sbjct: 87 LEVANKALLEELEEKKPEVRDALLMLFSSKTAAELSTPE--GKEKLKAEIKDRINTILKE 144
Query: 128 -QFISEVLIDELNYL 141
Q + +VL
Sbjct: 145 GQVVKDVLFTNFIIQ 159
>gnl|CDD|39210 KOG4007, KOG4007, KOG4007, Uncharacterized conserved protein
[Function unknown].
Length = 229
Score = 25.8 bits (56), Expect = 6.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 9 IWISVVTLISFYMLFLRSMDTMV 31
I IS++ ++ YM+FL +D ++
Sbjct: 139 IVISIIGILLLYMVFLMCLDPLL 161
>gnl|CDD|114310 pfam05580, Peptidase_S55, SpoIVB peptidase S55. The protein
SpoIVB plays a key role in signalling in the final
sigma-K checkpoint of Bacillus subtilis.
Length = 219
Score = 25.5 bits (56), Expect = 9.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 37 PLAIKNTNIIKSELVSIPSVSNG 59
L+IKN IIKS + SI SNG
Sbjct: 50 ILSIKNGEIIKSSITSIDKGSNG 72
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.382
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,012,568
Number of extensions: 99914
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 26
Length of query: 176
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,383,754
Effective search space: 390154106
Effective search space used: 390154106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)