RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780507|ref|YP_003064920.1| hypothetical protein
CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>gnl|CDD|183792 PRK12850, groEL, chaperonin GroEL; Reviewed.
          Length = 544

 Score = 30.1 bits (68), Expect = 0.31
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 103 VQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRL 153
           V +KA GF + RK + ED+    G Q ISE L  +L  +++ DM     R+
Sbjct: 274 VAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTL-DMLGRAKRV 323


>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
          Length = 541

 Score = 28.6 bits (64), Expect = 0.94
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 103 VQIKAFGFDNLRKKIKEDLNSRLGSQFISE 132
             +KA GF + RK + ED+    G   ISE
Sbjct: 274 AAVKAPGFGDRRKAMLEDIAILTGGTVISE 303


>gnl|CDD|77219 PRK09519, recA, DNA recombination protein RecA; Reviewed.
          Length = 790

 Score = 28.1 bits (62), Expect = 1.3
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 95  SGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDM----RSNC 150
           SG P G   Q+   G   LR+   + L   L  +F+ ++L +EL Y  I ++    R+  
Sbjct: 614 SGDPRGGMKQV--LGASRLRRDRVQALADALDDKFLHDMLAEELRYSVIREVLPTRRART 671

Query: 151 LRLGSNASDLMTQKGSLIEKNKEPLK 176
             L       +  +G ++     P K
Sbjct: 672 FDLEVEELHTLVAEGVVVHNCSPPFK 697


>gnl|CDD|171771 PRK12852, groEL, chaperonin GroEL; Reviewed.
          Length = 545

 Score = 27.5 bits (61), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 105 IKAFGFDNLRKKIKEDLNSRLGSQFISEVL 134
           +KA GF + RK + ED+    G Q ISE L
Sbjct: 276 VKAPGFGDRRKAMLEDIAILTGGQLISEDL 305


>gnl|CDD|115257 pfam06587, DUF1137, Protein of unknown function (DUF1137).  This
          family consists of several hypothetical proteins
          specific to Chlamydia species. The function of this
          family is unknown.
          Length = 159

 Score = 27.5 bits (61), Expect = 1.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 1  MLKFLFSGIWISVVTLISFY--MLFLRSMD-----TMVENHV---PP-LAIKNTNIIK 47
          M KFLF G++ S+V L+      + +  +D     + +  H    PP L IK   + K
Sbjct: 1  MTKFLFHGLFCSLVLLLCACVTAVAIIKVDDICDVSCMNKHFTPAPPFLKIKKLGVRK 58


>gnl|CDD|184933 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
           Provisional.
          Length = 527

 Score = 26.6 bits (59), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 73  VNDSQERSYLKEIATDYLYTLL 94
           VN+S+ R+ L  I  DYL+ LL
Sbjct: 232 VNESEVRAMLGAIDQDYLFALL 253


>gnl|CDD|182715 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA;
           Provisional.
          Length = 413

 Score = 26.6 bits (59), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 66  LVKLSFIVNDSQERSYLKEIATD 88
           L+K S I+ D Q R+ L++IA D
Sbjct: 273 LLKPSPIMTDEQARAKLEQIAAD 295


>gnl|CDD|182376 PRK10319, PRK10319, N-acetylmuramoyl-l-alanine amidase I;
           Provisional.
          Length = 287

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 9/28 (32%)

Query: 52  SIPSVSNGVLQAYFLVKLSFIVNDSQER 79
           SIPSV         LV+ SFI N  +ER
Sbjct: 235 SIPSV---------LVETSFITNPEEER 253


>gnl|CDD|180157 PRK05595, PRK05595, replicative DNA helicase; Provisional.
          Length = 444

 Score = 25.6 bits (56), Expect = 7.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 112 NLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRL 153
           NL  K  E++    G    +++ ID+   +S+++MRS C RL
Sbjct: 265 NLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRL 306


>gnl|CDD|162814 TIGR02348, GroEL, chaperonin GroL.  This family consists of GroEL,
           the larger subunit of the GroEL/GroES cytosolic
           chaperonin. It is found in bacteria, organelles derived
           from bacteria, and occasionally in the Archaea. The
           bacterial GroEL/GroES group I chaperonin is replaced a
           group II chaperonin, usually called the thermosome in
           the Archaeota and CCT (chaperone-containing TCP) in the
           Eukaryota. GroEL, thermosome subunits, and CCT subunits
           all fall under the scope of Pfam model pfam00118.
          Length = 524

 Score = 25.3 bits (56), Expect = 7.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 103 VQIKAFGFDNLRKKIKEDLNSRLGSQFISE 132
             +KA GF + RK + ED+    G Q ISE
Sbjct: 272 CAVKAPGFGDRRKAMLEDIAILTGGQVISE 301


>gnl|CDD|163415 TIGR03703, plsB, glycerol-3-phosphate O-acyltransferase.  Members
           of this protein family are PlsB, glycerol-3-phosphate
           O-acyltransferase, present in E. coli and numerous
           related species. In many bacteria, PlsB is not found,
           and appears to be replaced by a two enzyme system for
           1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y
           system.
          Length = 799

 Score = 25.3 bits (56), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 79  RSYLKEIATDYLYTLL 94
             YL EIA DY Y+L+
Sbjct: 243 LKYLDEIAADYSYSLI 258


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.138    0.382 

Gapped
Lambda     K      H
   0.267   0.0761    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,750,437
Number of extensions: 165733
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 22
Length of query: 176
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,114,577
Effective search space: 366197353
Effective search space used: 366197353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)