RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780507|ref|YP_003064920.1| hypothetical protein
CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
           denitrificans [TaxId: 266]}
          Length = 176

 Score = 28.9 bits (65), Expect = 0.26
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 105 IKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDEL 138
           +KA GF + RK + +D+    G Q ISE L  +L
Sbjct: 86  VKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKL 119


>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 511

 Score = 26.2 bits (57), Expect = 1.6
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 106 KAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLG 154
             +G+D          N   G+Q +  +++D ++ L ++   S   +  
Sbjct: 23  HGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSE 71


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 24.0 bits (52), Expect = 7.2
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 90  LYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISE 132
            + +  G P    V     G   + + +   +    G  FI E
Sbjct: 566 TWAVTIGLPTHIGVLPPITGSLPVTQILTSSVKDITGGYFIVE 608


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.382 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 609,970
Number of extensions: 26950
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 7
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)