BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780507|ref|YP_003064920.1| hypothetical protein
CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 176

 Score =  355 bits (910), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGV 60
           MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGV
Sbjct: 1   MLKFLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGV 60

Query: 61  LQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKED 120
           LQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKED
Sbjct: 61  LQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKED 120

Query: 121 LNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK 176
           LNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK
Sbjct: 121 LNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPLK 176


>gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62]
          Length = 551

 Score = 26.6 bits (57), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 83  KEIATDYLYTLL-----SGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDE 137
           +++  D L TL+      G P+   + +KA  F + RK++  D+ + +G+  ISE +  +
Sbjct: 252 EDVEGDALATLVVNRVRCGLPV---LAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGLK 308

Query: 138 LNYLSIVDMRS 148
           L   +I D+ S
Sbjct: 309 LEKATIADLGS 319


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 23.9 bits (50), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 50 LVSIPSVSNGVLQAYFLVKLSFIVNDSQE 78
          L  IP V+ G  Q Y    L+ I++ S+E
Sbjct: 68 LSKIPKVTGGGAQVYLSQPLAVILSKSEE 96


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 22.3 bits (46), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 102 FVQIKAFGFDNLRKKIKED 120
           FV++ A G D LR+ +K D
Sbjct: 510 FVEVSADGVDLLRRTVKLD 528


>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 374

 Score = 21.9 bits (45), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 25  RSMDTMVENHVPP--LAIKNTNIIKSELVSIPSVSNGV 60
           RSM++  ++ +    +AIK+ N +  E+  IP V+N V
Sbjct: 182 RSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVV 219


>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 21.9 bits (45), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 51  VSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGF 110
           +S   VS G+     +VK  F  + ++ R +LK  A     +++S   +    QIK   F
Sbjct: 341 ISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKL----QIKLQDF 396

Query: 111 DN 112
           D+
Sbjct: 397 DS 398


>gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 150

 Score = 21.6 bits (44), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 68 KLSFIVNDSQERSYLKEIATDYLYTLLSGP 97
          +L+ +V+D + +  +K +A  Y Y  LS P
Sbjct: 69 QLAPLVSDRRMKCNVKPVANLYQYRYLSDP 98


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,415
Number of Sequences: 1233
Number of extensions: 4144
Number of successful extensions: 12
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 9
length of query: 176
length of database: 328,796
effective HSP length: 68
effective length of query: 108
effective length of database: 244,952
effective search space: 26454816
effective search space used: 26454816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)