Query         gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs    37 out of 39
Neff          3.7 
Searched_HMMs 33803
Date          Wed Jun  1 16:50:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780508.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2fup_A Hypothetical protein P  87.9     2.1 6.3E-05   23.0   7.4   98    9-110    15-141 (157)
  2 >1mtz_A Proline iminopeptidase  41.3      11 0.00032   18.7   1.1   23   89-111    11-33  (50)
  3 >1wdn_A GLNBP, glutamine bindi  36.8      19 0.00057   17.1   1.9   22   90-111    92-113 (123)
  4 >2b1e_A Exocyst complex compon  36.8      30 0.00088   16.0   2.8   86    9-94     13-117 (121)
  5 >1v9n_A Malate dehydrogenase;   36.7      32 0.00093   15.9   3.4   41   73-113    18-58  (117)
  6 >2e8g_A Hypothetical protein P  32.0      33 0.00097   15.7   2.4   20    2-21      3-25  (127)
  7 >1lst_A Lysine, arginine, orni  26.3      37  0.0011   15.4   1.8   22   90-111   105-126 (139)
  8 >2iee_A ORF2, probable ABC tra  21.2      37  0.0011   15.4   1.0   22   89-110    96-117 (149)
  9 >3i6v_A Periplasmic His/Glu/Gl  21.0      46  0.0014   14.8   1.5   22   90-111   107-128 (149)
 10 >1na6_A Ecorii, restriction en  18.6      57  0.0017   14.3   1.5   17   29-45     62-86  (103)

No 1  
>>2fup_A Hypothetical protein PA3352; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 1.48A {Pseudomonas aeruginosa} (A:)
Probab=87.94  E-value=2.1  Score=23.02  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-------------HHH-------------C---
Q ss_conf             99999999999999999985178888799898777899999998249-------------988-------------1---
Q gi|254780508|r    9 IQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILS-------------CEE-------------I---   59 (123)
Q Consensus         9 i~s~i~RLe~vId~Et~aL~~~~~~Dl~e~N~rKSr~LlELtrl~r~-------------~~~-------------~---   59 (123)
                      ...+++.|..+.+.|..+|..+..-.+...+..|...+-.+..+-..             ...             +   
T Consensus        15 ~~~~~~~L~~lle~e~~al~~~d~~~L~~l~~~k~~l~~~l~~l~~~r~~~l~~l~~~~~~~~~~~l~~~~~~~~~L~~~   94 (157)
T 2fup_A           15 DIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLXQQLERNGRARAEILREAGVSLDREGLARYARERADGAELLAR   94 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999999999999998089999999999999999999999999999999828998820499997728853899999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             967799999999999999999999999999999999999998752887452
Q gi|254780508|r   60 SWDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHD  110 (123)
Q Consensus        60 ~~~~~~~L~~Lr~KL~rN~~~L~~HL~AVreVa~ii~~Ai~~aESDGTYSa  110 (123)
                      -..+...+..+++.=..|..+++.++.-++..-.+|+.    +..++||.+
T Consensus        95 ~~~l~~~~~~~~~~N~~N~~Li~~~l~~~~~~l~~l~~----~~~~~~Y~~  141 (157)
T 2fup_A           95 GDELGELLERCQQANLRNGRIIRANQASTGSLLNILRG----QDAPSLYDS  141 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCC
T ss_conf             99999999999999999999999999999999998577----988888699


No 2  
>>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} (A:136-185)
Probab=41.32  E-value=11  Score=18.73  Aligned_cols=23  Identities=9%  Similarity=0.421  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999987528874522
Q gi|254780508|r   89 RVVADLFKKQLQEIDADGTYHDG  111 (123)
Q Consensus        89 reVa~ii~~Ai~~aESDGTYSa~  111 (123)
                      ..+..-++.+|..+|.-|||+.+
T Consensus        11 ~~Lp~~~q~ai~~~E~~G~~~~p   33 (50)
T 1mtz_A           11 DELPAKYRDAIKKYGSSGSYENP   33 (50)
T ss_dssp             HTSCHHHHHHHHHHHHHTCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             23267789998876541232356


No 3  
>>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} (A:1-83,A:187-226)
Probab=36.82  E-value=19  Score=17.15  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999999987528874522
Q gi|254780508|r   90 VVADLFKKQLQEIDADGTYHDG  111 (123)
Q Consensus        90 eVa~ii~~Ai~~aESDGTYSa~  111 (123)
                      ++.+-|.+++.+-.+||||-.=
T Consensus        92 ~l~~~~n~~l~~~~~~g~~~~i  113 (123)
T 1wdn_A           92 ELRDKVNGALKTLRENGTYNEI  113 (123)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHH
T ss_conf             9999999999999979699999


No 4  
>>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A (A:168-288)
Probab=36.82  E-value=30  Score=16.01  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHH---------HHHHHHHHHHHHCC-HH---HCCHHHHHHHHHHHHH
Q ss_conf             999999999999999999851788--887998987---------77899999998249-98---8196779999999999
Q gi|254780508|r    9 IQTVLKRVIAVIDNENKNLKNNSQ--FDISISNDH---------KGRCLHELSVLILS-CE---EISWDHLEQIRTLHEK   73 (123)
Q Consensus         9 i~s~i~RLe~vId~Et~aL~~~~~--~Dl~e~N~r---------KSr~LlELtrl~r~-~~---~~~~~~~~~L~~Lr~K   73 (123)
                      |-+--.-++..|-+|...+..-=.  +|.+..-.+         =++-|.|++..++. ..   -++-++.+-...++..
T Consensus        13 i~~YaeAl~gfi~~E~~~i~~if~~~~d~~~~v~~~t~~p~l~~y~k~lreln~~IK~nl~td~~l~FEiie~v~~ls~~   92 (121)
T 2b1e_A           13 MNSYTEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKKS   92 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999975885336778999999999999999999999987447247788999999999999998


Q ss_pred             HH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             99----9999999999999999999
Q gi|254780508|r   74 LA----LNSSLLESYLDAARVVADL   94 (123)
Q Consensus        74 L~----rN~~~L~~HL~AVreVa~i   94 (123)
                      |+    .|...+..-|+-||+++.-
T Consensus        93 L~~kt~e~k~~l~~~l~~vretaks  117 (121)
T 2b1e_A           93 LRGKELQNYNLLQDCTQEVRQVTQS  117 (121)
T ss_dssp             TTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8753277899999999999999999


No 5  
>>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii OT3} (A:1-73,A:317-360)
Probab=36.67  E-value=32  Score=15.85  Aligned_cols=41  Identities=17%  Similarity=0.105  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999999999999999999999999998752887452252
Q gi|254780508|r   73 KLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFC  113 (123)
Q Consensus        73 KL~rN~~~L~~HL~AVreVa~ii~~Ai~~aESDGTYSa~~~  113 (123)
                      +|..=...+-.+...-.+.|.+++..+-++|-+|.||-|+-
T Consensus        18 ~l~~~~~~il~~~G~s~~~A~~vA~~Lv~Adl~G~~SHGi~   58 (117)
T 1v9n_A           18 RLFSFIVRVLTKLGVPEEDAKIVADNLVXADLRGVESHGVQ   58 (117)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCGGGSGG
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99999999999869999999999999999874996256897


No 6  
>>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} (A:1-127)
Probab=31.97  E-value=33  Score=15.74  Aligned_cols=20  Identities=35%  Similarity=0.581  Sum_probs=13.8

Q ss_pred             CCCHHHHHHHH---HHHHHHHHH
Q ss_conf             87645899999---999999999
Q gi|254780508|r    2 STSSDYRIQTV---LKRVIAVID   21 (123)
Q Consensus         2 ~~s~d~ri~s~---i~RLe~vId   21 (123)
                      .|||||||.-|   +..++.+|.
T Consensus         3 DTsnDyRiLvAEkave~~~r~i~   25 (127)
T 2e8g_A            3 DTSKDYRLLVAEKSVELFIRTIE   25 (127)
T ss_dssp             CGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             51255999999999999998724


No 7  
>>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} (A:1-88,A:189-239)
Probab=26.29  E-value=37  Score=15.43  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999999987528874522
Q gi|254780508|r   90 VVADLFKKQLQEIDADGTYHDG  111 (123)
Q Consensus        90 eVa~ii~~Ai~~aESDGTYSa~  111 (123)
                      ++.+-|..+|+....||||..-
T Consensus       105 ~L~~~in~al~~~~~dGt~~~i  126 (139)
T 1lst_A          105 ELKAAFDKALTELRQDGTYDKM  126 (139)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHH
T ss_conf             9999999999999979599999


No 8  
>>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} (A:1-94,A:217-271)
Probab=21.18  E-value=37  Score=15.44  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999998752887452
Q gi|254780508|r   89 RVVADLFKKQLQEIDADGTYHD  110 (123)
Q Consensus        89 reVa~ii~~Ai~~aESDGTYSa  110 (123)
                      .++.+-+..||++--.||||..
T Consensus        96 ~~l~~~~~kal~e~~~DGT~~k  117 (149)
T 2iee_A           96 AALQKKXNEALKEXSKDGSLTK  117 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCHHHH
T ss_conf             9999999999999997867999


No 9  
>>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} (A:1-90,A:174-232)
Probab=20.95  E-value=46  Score=14.85  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999999987528874522
Q gi|254780508|r   90 VVADLFKKQLQEIDADGTYHDG  111 (123)
Q Consensus        90 eVa~ii~~Ai~~aESDGTYSa~  111 (123)
                      ++.+-+..||..-..||||.+-
T Consensus       107 ~L~~~in~al~~l~~dGt~~~i  128 (149)
T 3i6v_A          107 ELRGKFDAAITSMKEDGTLNTM  128 (149)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHH
T ss_conf             9999999999999969199999


No 10 
>>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} (A:181-283)
Probab=18.64  E-value=57  Score=14.28  Aligned_cols=17  Identities=24%  Similarity=0.202  Sum_probs=10.4

Q ss_pred             HCCCCCHHH--------HHHHHHHH
Q ss_conf             178888799--------89877789
Q gi|254780508|r   29 NNSQFDISI--------SNDHKGRC   45 (123)
Q Consensus        29 ~~~~~Dl~e--------~N~rKSr~   45 (123)
                      ..+-.|.++        +|+||||.
T Consensus        62 ~~GF~dVD~Fis~a~SV~NRRKSRa   86 (103)
T 1na6_A           62 RKGFGSVDEFIALANSVSNRRKSRA   86 (103)
T ss_dssp             HHCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             8289658999998877877666301


Done!