Query gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 123 No_of_seqs 37 out of 39 Neff 3.7 Searched_HMMs 33803 Date Wed Jun 1 16:50:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780508.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2fup_A Hypothetical protein P 87.9 2.1 6.3E-05 23.0 7.4 98 9-110 15-141 (157) 2 >1mtz_A Proline iminopeptidase 41.3 11 0.00032 18.7 1.1 23 89-111 11-33 (50) 3 >1wdn_A GLNBP, glutamine bindi 36.8 19 0.00057 17.1 1.9 22 90-111 92-113 (123) 4 >2b1e_A Exocyst complex compon 36.8 30 0.00088 16.0 2.8 86 9-94 13-117 (121) 5 >1v9n_A Malate dehydrogenase; 36.7 32 0.00093 15.9 3.4 41 73-113 18-58 (117) 6 >2e8g_A Hypothetical protein P 32.0 33 0.00097 15.7 2.4 20 2-21 3-25 (127) 7 >1lst_A Lysine, arginine, orni 26.3 37 0.0011 15.4 1.8 22 90-111 105-126 (139) 8 >2iee_A ORF2, probable ABC tra 21.2 37 0.0011 15.4 1.0 22 89-110 96-117 (149) 9 >3i6v_A Periplasmic His/Glu/Gl 21.0 46 0.0014 14.8 1.5 22 90-111 107-128 (149) 10 >1na6_A Ecorii, restriction en 18.6 57 0.0017 14.3 1.5 17 29-45 62-86 (103) No 1 >>2fup_A Hypothetical protein PA3352; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 1.48A {Pseudomonas aeruginosa} (A:) Probab=87.94 E-value=2.1 Score=23.02 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=73.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-------------HHH-------------C--- Q ss_conf 99999999999999999985178888799898777899999998249-------------988-------------1--- Q gi|254780508|r 9 IQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILS-------------CEE-------------I--- 59 (123) Q Consensus 9 i~s~i~RLe~vId~Et~aL~~~~~~Dl~e~N~rKSr~LlELtrl~r~-------------~~~-------------~--- 59 (123) ...+++.|..+.+.|..+|..+..-.+...+..|...+-.+..+-.. ... + T Consensus 15 ~~~~~~~L~~lle~e~~al~~~d~~~L~~l~~~k~~l~~~l~~l~~~r~~~l~~l~~~~~~~~~~~l~~~~~~~~~L~~~ 94 (157) T 2fup_A 15 DIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLXQQLERNGRARAEILREAGVSLDREGLARYARERADGAELLAR 94 (157) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTCTTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999999998089999999999999999999999999999999828998820499997728853899999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 967799999999999999999999999999999999999998752887452 Q gi|254780508|r 60 SWDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHD 110 (123) Q Consensus 60 ~~~~~~~L~~Lr~KL~rN~~~L~~HL~AVreVa~ii~~Ai~~aESDGTYSa 110 (123) -..+...+..+++.=..|..+++.++.-++..-.+|+. +..++||.+ T Consensus 95 ~~~l~~~~~~~~~~N~~N~~Li~~~l~~~~~~l~~l~~----~~~~~~Y~~ 141 (157) T 2fup_A 95 GDELGELLERCQQANLRNGRIIRANQASTGSLLNILRG----QDAPSLYDS 141 (157) T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC-------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCC T ss_conf 99999999999999999999999999999999998577----988888699 No 2 >>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} (A:136-185) Probab=41.32 E-value=11 Score=18.73 Aligned_cols=23 Identities=9% Similarity=0.421 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99999999999987528874522 Q gi|254780508|r 89 RVVADLFKKQLQEIDADGTYHDG 111 (123) Q Consensus 89 reVa~ii~~Ai~~aESDGTYSa~ 111 (123) ..+..-++.+|..+|.-|||+.+ T Consensus 11 ~~Lp~~~q~ai~~~E~~G~~~~p 33 (50) T 1mtz_A 11 DELPAKYRDAIKKYGSSGSYENP 33 (50) T ss_dssp HTSCHHHHHHHHHHHHHTCTTCH T ss_pred HHHHHHHHHHHHHHHHHCCCCCH T ss_conf 23267789998876541232356 No 3 >>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} (A:1-83,A:187-226) Probab=36.82 E-value=19 Score=17.15 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999999999987528874522 Q gi|254780508|r 90 VVADLFKKQLQEIDADGTYHDG 111 (123) Q Consensus 90 eVa~ii~~Ai~~aESDGTYSa~ 111 (123) ++.+-|.+++.+-.+||||-.= T Consensus 92 ~l~~~~n~~l~~~~~~g~~~~i 113 (123) T 1wdn_A 92 ELRDKVNGALKTLRENGTYNEI 113 (123) T ss_dssp HHHHHHHHHHHHHHHTSHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHH T ss_conf 9999999999999979699999 No 4 >>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A (A:168-288) Probab=36.82 E-value=30 Score=16.01 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHH---------HHHHHHHHHHHHCC-HH---HCCHHHHHHHHHHHHH Q ss_conf 999999999999999999851788--887998987---------77899999998249-98---8196779999999999 Q gi|254780508|r 9 IQTVLKRVIAVIDNENKNLKNNSQ--FDISISNDH---------KGRCLHELSVLILS-CE---EISWDHLEQIRTLHEK 73 (123) Q Consensus 9 i~s~i~RLe~vId~Et~aL~~~~~--~Dl~e~N~r---------KSr~LlELtrl~r~-~~---~~~~~~~~~L~~Lr~K 73 (123) |-+--.-++..|-+|...+..-=. +|.+..-.+ =++-|.|++..++. .. -++-++.+-...++.. T Consensus 13 i~~YaeAl~gfi~~E~~~i~~if~~~~d~~~~v~~~t~~p~l~~y~k~lreln~~IK~nl~td~~l~FEiie~v~~ls~~ 92 (121) T 2b1e_A 13 MNSYTEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKKS 92 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999975885336778999999999999999999999987447247788999999999999998 Q ss_pred HH----HHHHHHHHHHHHHHHHHHH Q ss_conf 99----9999999999999999999 Q gi|254780508|r 74 LA----LNSSLLESYLDAARVVADL 94 (123) Q Consensus 74 L~----rN~~~L~~HL~AVreVa~i 94 (123) |+ .|...+..-|+-||+++.- T Consensus 93 L~~kt~e~k~~l~~~l~~vretaks 117 (121) T 2b1e_A 93 LRGKELQNYNLLQDCTQEVRQVTQS 117 (121) T ss_dssp TTTCCCTTHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8753277899999999999999999 No 5 >>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii OT3} (A:1-73,A:317-360) Probab=36.67 E-value=32 Score=15.85 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99999999999999999999999999998752887452252 Q gi|254780508|r 73 KLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFC 113 (123) Q Consensus 73 KL~rN~~~L~~HL~AVreVa~ii~~Ai~~aESDGTYSa~~~ 113 (123) +|..=...+-.+...-.+.|.+++..+-++|-+|.||-|+- T Consensus 18 ~l~~~~~~il~~~G~s~~~A~~vA~~Lv~Adl~G~~SHGi~ 58 (117) T 1v9n_A 18 RLFSFIVRVLTKLGVPEEDAKIVADNLVXADLRGVESHGVQ 58 (117) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCGGGSGG T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 99999999999869999999999999999874996256897 No 6 >>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} (A:1-127) Probab=31.97 E-value=33 Score=15.74 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=13.8 Q ss_pred CCCHHHHHHHH---HHHHHHHHH Q ss_conf 87645899999---999999999 Q gi|254780508|r 2 STSSDYRIQTV---LKRVIAVID 21 (123) Q Consensus 2 ~~s~d~ri~s~---i~RLe~vId 21 (123) .|||||||.-| +..++.+|. T Consensus 3 DTsnDyRiLvAEkave~~~r~i~ 25 (127) T 2e8g_A 3 DTSKDYRLLVAEKSVELFIRTIE 25 (127) T ss_dssp CGGGCHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHC T ss_conf 51255999999999999998724 No 7 >>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} (A:1-88,A:189-239) Probab=26.29 E-value=37 Score=15.43 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999999999987528874522 Q gi|254780508|r 90 VVADLFKKQLQEIDADGTYHDG 111 (123) Q Consensus 90 eVa~ii~~Ai~~aESDGTYSa~ 111 (123) ++.+-|..+|+....||||..- T Consensus 105 ~L~~~in~al~~~~~dGt~~~i 126 (139) T 1lst_A 105 ELKAAFDKALTELRQDGTYDKM 126 (139) T ss_dssp HHHHHHHHHHHHHHHTTHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHH T ss_conf 9999999999999979599999 No 8 >>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} (A:1-94,A:217-271) Probab=21.18 E-value=37 Score=15.44 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=17.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999998752887452 Q gi|254780508|r 89 RVVADLFKKQLQEIDADGTYHD 110 (123) Q Consensus 89 reVa~ii~~Ai~~aESDGTYSa 110 (123) .++.+-+..||++--.||||.. T Consensus 96 ~~l~~~~~kal~e~~~DGT~~k 117 (149) T 2iee_A 96 AALQKKXNEALKEXSKDGSLTK 117 (149) T ss_dssp HHHHHHHHHHHHHHHHHTHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHH T ss_conf 9999999999999997867999 No 9 >>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} (A:1-90,A:174-232) Probab=20.95 E-value=46 Score=14.85 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999999999987528874522 Q gi|254780508|r 90 VVADLFKKQLQEIDADGTYHDG 111 (123) Q Consensus 90 eVa~ii~~Ai~~aESDGTYSa~ 111 (123) ++.+-+..||..-..||||.+- T Consensus 107 ~L~~~in~al~~l~~dGt~~~i 128 (149) T 3i6v_A 107 ELRGKFDAAITSMKEDGTLNTM 128 (149) T ss_dssp HHHHHHHHHHHHHHHTSHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHH T ss_conf 9999999999999969199999 No 10 >>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} (A:181-283) Probab=18.64 E-value=57 Score=14.28 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=10.4 Q ss_pred HCCCCCHHH--------HHHHHHHH Q ss_conf 178888799--------89877789 Q gi|254780508|r 29 NNSQFDISI--------SNDHKGRC 45 (123) Q Consensus 29 ~~~~~Dl~e--------~N~rKSr~ 45 (123) ..+-.|.++ +|+||||. T Consensus 62 ~~GF~dVD~Fis~a~SV~NRRKSRa 86 (103) T 1na6_A 62 RKGFGSVDEFIALANSVSNRRKSRA 86 (103) T ss_dssp HHCCSSHHHHHHHHHHHHHHHHHHS T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 8289658999998877877666301 Done!