RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780508|ref|YP_003064921.1| hypothetical protein
CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62]
(123 letters)
>gnl|CDD|148175 pfam06413, Neugrin, Neugrin. This family consists of several
mouse and human neugrin proteins. Neugrin and m-neugrin
are mainly expressed in neurons in the nervous system,
and are thought to play an important role in the
process of neuronal differentiation.
Length = 225
Score = 27.2 bits (60), Expect = 1.0
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 59 ISWDHLEQIRTLHE 72
++W+ +EQIR L +
Sbjct: 11 LTWEAIEQIRYLKQ 24
>gnl|CDD|180331 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 26.8 bits (60), Expect = 1.7
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 59 ISWDHLEQ--------IRTLHEKLALNSSLLESYLDAARVVADLFKK 97
++W+ L+ IRT+ +LA S Y DA + + K+
Sbjct: 808 LTWEELKALLDPKQWTIRTVPARLAKLSDPWADYADARQSLTAAMKR 854
>gnl|CDD|148155 pfam06378, DUF1071, Protein of unknown function (DUF1071). This
family consists of several hypothetical bacterial and
phage proteins of unknown function.
Length = 162
Score = 26.6 bits (59), Expect = 1.9
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 19 VIDNENKNLKNNSQFDISISNDHKGRCL------HELSVLILSCEEISWDHLEQIRTLHE 72
V+D NK + + FDI N RCL H L + I + E++ D + L E
Sbjct: 85 VMDYRNKPIAKPTAFDI---NKSIMRCLVKAIALHGLGLYIYAGEDLPNDEDKDSPKLPE 141
>gnl|CDD|183348 PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Reviewed.
Length = 286
Score = 26.0 bits (58), Expect = 2.5
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 88 ARVVADLFKKQLQEIDADGTYHDGFC--ESLNPCKT 121
AR D KQL E+ H GF E L PC T
Sbjct: 171 ARGF-DSDVKQLTELIKAAINHKGFSFVEILQPCPT 205
>gnl|CDD|178562 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 25.9 bits (57), Expect = 2.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 14 KRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHE----------LSVLILSCEEI---S 60
KRV+ + DNE +LK+ I + KGR LS L + E+I +
Sbjct: 255 KRVLVIEDNEVVHLKDGG-VGIYKFENEKGRGGGGLSRPASVERALSTLEMEVEQIMKGN 313
Query: 61 WDHLEQIRTLHEK 73
+DH Q + +HE+
Sbjct: 314 YDHYMQ-KEIHEQ 325
>gnl|CDD|148953 pfam07626, PSD3, Protein of unknown function (DUF1587). A region
of similarity shared by several Rhodopirellula baltica
cytochrome-like proteins that are predicted to be
secreted. These proteins also match pfam07624.
Length = 68
Score = 26.0 bits (58), Expect = 2.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 74 LALNSSLLESYLDAARVVADLF 95
L+++ LLE YL AAR D
Sbjct: 42 LSMSPLLLEQYLQAARKALDEA 63
>gnl|CDD|132329 TIGR03286, methan_mark_15, putative methanogenesis marker protein
15. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Related proteins include the BadF/BadG/BcrA/BcrD ATPase
family (pfam01869), which includes an activator for
(R)-2-hydroxyglutaryl-CoA dehydratase.
Length = 404
Score = 24.4 bits (53), Expect = 7.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 67 IRTLHEKLALNSSLLESYLDAARVVAD-LFKKQLQEID 103
I+ L LA +S + A VA+ ++++QLQEID
Sbjct: 317 IQDLVTALAEGASPEDVAAAACHSVAEQVYEQQLQEID 354
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed.
Length = 663
Score = 24.3 bits (53), Expect = 7.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 37 ISNDHKGRCLHELSVLILSCEEISWDHLEQIRTLHEK 73
+SN H L+ S+L L+ ++ + L+ R LH K
Sbjct: 62 LSNGHASMLLY--SLLHLTGYDLPIEELKNFRQLHSK 96
>gnl|CDD|162902 TIGR02520, pilus_B_mal_scr, type IVB pilus formation outer membrane
protein, R64 PilN family. Several related protein
families encode outer membrane pore proteins for type II
secretion, type III secretion, and type IV pilus
formation. This protein family appears to encode a
secretin for pilus formation, although it is quite
different from PilQ. Members include the PilN
lipoprotein of the plasmid R64 thin pilus, a type IV
pilus. Scoring between the trusted and noise cutoffs are
examples of bundle-forming pilus B (bfpB).
Length = 497
Score = 24.5 bits (53), Expect = 8.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 12 VLKRVIAVIDNENKNLKNNSQFDISISN 39
VL RV + ID++N+ L ++ + +
Sbjct: 242 VLDRVASYIDSQNRRLTRQVLLNVKVLS 269
>gnl|CDD|182846 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 24.2 bits (53), Expect = 8.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 88 ARVVADLFKKQLQEIDAD 105
AR+ ++L KK+ Q++DA
Sbjct: 206 ARLRSELAKKRSQQLDAY 223
>gnl|CDD|183325 PRK11820, PRK11820, hypothetical protein; Provisional.
Length = 288
Score = 24.0 bits (53), Expect = 9.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 73 KLALNSSLLESYLDAARVVADLF 95
+L+LN L + YL+A +
Sbjct: 77 ELSLNEDLAKQYLEALEELKAEL 99
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,874,163
Number of extensions: 103540
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 24
Length of query: 123
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,222,617
Effective search space: 173127297
Effective search space used: 173127297
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)