RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780508|ref|YP_003064921.1| hypothetical protein
CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)



>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme
           degradation, regioselectivity, oxidoreductase; HET: HEM;
           1.60A {Pseudomonas aeruginosa} (A:)
          Length = 198

 Score = 30.0 bits (67), Expect = 0.13
 Identities = 6/43 (13%), Positives = 12/43 (27%)

Query: 62  DHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDA 104
              +    + + + LN          A    + F   L+   A
Sbjct: 156 QGWKSFVAILDGIELNEEEERLAAKGASDAFNRFGDLLERTFA 198


>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus
          kodakarensis KOD1} PDB: 2cw7_A (A:162-226)
          Length = 65

 Score = 26.0 bits (57), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 56 CEEISWDHLEQIRTLHEKLALN 77
           E + WD L+  R L+E L  N
Sbjct: 44 YEVLDWDSLKNYRRLYEALVEN 65


>1wzd_A Heme oxygenase; electron-transfer, metal, artificial
           metalloprotein, oxidoreductase; HET: YOK; 1.35A
           {Corynebacterium diphtheriae} (A:)
          Length = 215

 Score = 25.4 bits (55), Expect = 2.5
 Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 1/49 (2%)

Query: 58  EISWDHLEQI-RTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDAD 105
                  +   R     L L+    E  L  A        +   ++   
Sbjct: 166 IAKLKVYKDEYREKLNNLELSDEQREHLLKEATDAFVFNHQVFADLGKG 214


>3fh2_A Probable ATP-dependent protease (heat shock protein);
           structural genomics, PSI2, MCSG, protein structure
           initiative; 1.60A {Corynebacterium glutamicum atcc
           13032} (A:)
          Length = 146

 Score = 25.1 bits (54), Expect = 3.6
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 3/105 (2%)

Query: 1   MSTSSDYRIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILSCEEIS 60
           +    +      L+ +   +D   + ++         +  H         VL LS  E  
Sbjct: 39  LIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLREGL 98

Query: 61  WDHLEQIRTLHEKLAL---NSSLLESYLDAARVVADLFKKQLQEI 102
               + I T    L L      +    L          ++Q+ ++
Sbjct: 99  QMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQL 143


>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form,
           oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} (A:)
          Length = 267

 Score = 24.6 bits (53), Expect = 4.6
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 68  RTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDA 104
           R     L +   +     + A+    L  +  +E+ A
Sbjct: 183 RARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQA 219


>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site,
           oxidoreductase; HET: HEM; 1.50A {Homo sapiens} (A:)
          Length = 233

 Score = 24.2 bits (52), Expect = 6.2
 Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 57  EEISWDHLEQI-RTLHEKLALNSSLLESYLDAARVVADLFKKQLQEID 103
              S    +Q+ R+    L +  ++ +  ++ A+    L  +  +E+ 
Sbjct: 171 NIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQ 218


>2p0o_A Hypothetical protein DUF871; structural genomics, TIM
          barrel, PF05913, PSI-2, protein structure initiative;
          2.15A {Enterococcus faecalis V583} (A:269-344)
          Length = 76

 Score = 23.9 bits (52), Expect = 7.3
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%)

Query: 5  SDYRIQTVLKRVIAVIDNENK------NLKNNSQFDISISNDHKGRCLHELSV 51
          +   +++ L R       +          +      ++I N+  GR   E+ V
Sbjct: 1  ARDVLRSELSRTSEXFRKDEIATIESEQTEARPVGTVTIDNEKYGRYXGEIQV 53


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 892,577
Number of extensions: 33869
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 16
Length of query: 123
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 50
Effective length of database: 2,488,284
Effective search space: 124414200
Effective search space used: 124414200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)