RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62] (123 letters) >1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidoreductase; HET: HEM; 1.60A {Pseudomonas aeruginosa} (A:) Length = 198 Score = 30.0 bits (67), Expect = 0.13 Identities = 6/43 (13%), Positives = 12/43 (27%) Query: 62 DHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDA 104 + + + + LN A + F L+ A Sbjct: 156 QGWKSFVAILDGIELNEEEERLAAKGASDAFNRFGDLLERTFA 198 >2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis KOD1} PDB: 2cw7_A (A:162-226) Length = 65 Score = 26.0 bits (57), Expect = 2.0 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 56 CEEISWDHLEQIRTLHEKLALN 77 E + WD L+ R L+E L N Sbjct: 44 YEVLDWDSLKNYRRLYEALVEN 65 >1wzd_A Heme oxygenase; electron-transfer, metal, artificial metalloprotein, oxidoreductase; HET: YOK; 1.35A {Corynebacterium diphtheriae} (A:) Length = 215 Score = 25.4 bits (55), Expect = 2.5 Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 1/49 (2%) Query: 58 EISWDHLEQI-RTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDAD 105 + R L L+ E L A + ++ Sbjct: 166 IAKLKVYKDEYREKLNNLELSDEQREHLLKEATDAFVFNHQVFADLGKG 214 >3fh2_A Probable ATP-dependent protease (heat shock protein); structural genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum atcc 13032} (A:) Length = 146 Score = 25.1 bits (54), Expect = 3.6 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 3/105 (2%) Query: 1 MSTSSDYRIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILSCEEIS 60 + + L+ + +D + ++ + H VL LS E Sbjct: 39 LIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLREGL 98 Query: 61 WDHLEQIRTLHEKLAL---NSSLLESYLDAARVVADLFKKQLQEI 102 + I T L L + L ++Q+ ++ Sbjct: 99 QMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQL 143 >1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} (A:) Length = 267 Score = 24.6 bits (53), Expect = 4.6 Identities = 6/37 (16%), Positives = 13/37 (35%) Query: 68 RTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDA 104 R L + + + A+ L + +E+ A Sbjct: 183 RARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQA 219 >1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} (A:) Length = 233 Score = 24.2 bits (52), Expect = 6.2 Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 57 EEISWDHLEQI-RTLHEKLALNSSLLESYLDAARVVADLFKKQLQEID 103 S +Q+ R+ L + ++ + ++ A+ L + +E+ Sbjct: 171 NIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQ 218 >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583} (A:269-344) Length = 76 Score = 23.9 bits (52), Expect = 7.3 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%) Query: 5 SDYRIQTVLKRVIAVIDNENK------NLKNNSQFDISISNDHKGRCLHELSV 51 + +++ L R + + ++I N+ GR E+ V Sbjct: 1 ARDVLRSELSRTSEXFRKDEIATIESEQTEARPVGTVTIDNEKYGRYXGEIQV 53 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.131 0.374 Gapped Lambda K H 0.267 0.0519 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 892,577 Number of extensions: 33869 Number of successful extensions: 106 Number of sequences better than 10.0: 1 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 16 Length of query: 123 Length of database: 4,956,049 Length adjustment: 73 Effective length of query: 50 Effective length of database: 2,488,284 Effective search space: 124414200 Effective search space used: 124414200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.5 bits)