RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62] (123 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 45.7 bits (108), Expect = 3e-06 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 40/139 (28%) Query: 13 LKRVIAVIDNENKNLKNNSQFDISISNDHKGR----------CLHELSVLILSCEEISWD 62 ++V ++ N +L Q +IS+ N G L+ L L L + Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVN---GAKNLVVSGPPQSLYGL-NLTL--RKAKAP 399 Query: 63 -HLEQIRTLH--EKLALNSSLL-------ESYLDAA--RVVADLFKKQLQEIDADG---- 106 L+Q R KL ++ L L A + DL K + +A Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV-SFNAKDIQIP 458 Query: 107 TYH--DG-----FCESLNP 118 Y DG S++ Sbjct: 459 VYDTFDGSDLRVLSGSISE 477 Score = 31.8 bits (72), Expect = 0.037 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 23/68 (33%) Query: 60 SWDHLEQ-----IRTL-------HE---KLALNSSLLESYLDAAR-------VVADLFKK 97 SW+ I L +E +L S+LE L+ +++L ++ Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347 Query: 98 QLQE-IDA 104 Q+Q+ ++ Sbjct: 348 QVQDYVNK 355 Score = 25.3 bits (55), Expect = 4.3 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 42/129 (32%) Query: 10 QTVLKRVIAVIDNENKNLKNNSQFDISISND-----H----KGRCLHE-LSVLI------ 53 Q V R DN K+ S DI I+N H KG+ + E S +I Sbjct: 1643 QDVWNRA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698 Query: 54 --LSCEEISWDHLEQIRTLH----EKLALNS--------SLLESYLDAARVVADLFKKQL 99 L E+I + + + T + EK L++ +L+E AA DL K L Sbjct: 1699 GKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK---AA--FEDLKSKGL 1752 Query: 100 QEIDADGTY 108 I AD T+ Sbjct: 1753 --IPADATF 1759 >2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Score = 28.1 bits (61), Expect = 0.54 Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 85 LDAARVVADLFKKQLQEIDADGTYHDGFCESL 116 LD VVA+ + Q + +AD D L Sbjct: 26 LDRIEVVAEEIRGQAVQSEADCRLTDAAAGLL 57 >3o4x_E Protein diaphanous homolog 1; autoinhibition, actin nucleator, actin binding, protein BIND; 3.20A {Mus musculus} PDB: 2bap_D Length = 467 Score = 27.1 bits (59), Expect = 1.2 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 10/121 (8%) Query: 8 RIQTVLKRVIAVIDNENKNLKNNSQFDISI----------SNDHKGRCLHELSVLILSCE 57 ++L+ + V + N +N F +I S D K LH L+ L + Sbjct: 222 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDH 281 Query: 58 EISWDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFCESLN 117 +++ + + +++ L+ LD + ++ +Q A D F E + Sbjct: 282 PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMT 341 Query: 118 P 118 Sbjct: 342 S 342 >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207 Score = 25.7 bits (55), Expect = 2.7 Identities = 9/48 (18%), Positives = 14/48 (29%) Query: 8 RIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILS 55 R + +D L FD + N EL L++ Sbjct: 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 >3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, acetylation; HET: NAP; 2.90A {Rattus norvegicus} Length = 367 Score = 25.0 bits (54), Expect = 4.7 Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 81 LESYLDAARVVADLFKKQLQEIDA 104 L + A +V+ L + EID+ Sbjct: 330 LMENIGAIQVLPKLSSSIVHEIDS 353 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 24.5 bits (52), Expect = 5.9 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 96 KKQLQEIDA 104 +K+LQE+DA Sbjct: 95 RKRLQELDA 103 >1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A* Length = 209 Score = 24.6 bits (53), Expect = 5.9 Identities = 8/43 (18%), Positives = 11/43 (25%) Query: 62 DHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDA 104 H L L + AR +K L+E Sbjct: 151 KHWRAFVEHLNALNLTPEAEAEAIQGAREAFAFYKVVLRETFG 193 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.131 0.374 Gapped Lambda K H 0.267 0.0492 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,013,703 Number of extensions: 39306 Number of successful extensions: 131 Number of sequences better than 10.0: 1 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 13 Length of query: 123 Length of database: 5,693,230 Length adjustment: 81 Effective length of query: 42 Effective length of database: 3,729,466 Effective search space: 156637572 Effective search space used: 156637572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.0 bits)