RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780508|ref|YP_003064921.1| hypothetical protein
CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 40/139 (28%)

Query: 13  LKRVIAVIDNENKNLKNNSQFDISISNDHKGR----------CLHELSVLILSCEEISWD 62
            ++V   ++  N +L    Q +IS+ N   G            L+ L  L L   +    
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVN---GAKNLVVSGPPQSLYGL-NLTL--RKAKAP 399

Query: 63  -HLEQIRTLH--EKLALNSSLL-------ESYLDAA--RVVADLFKKQLQEIDADG---- 106
             L+Q R      KL  ++  L          L  A   +  DL K  +   +A      
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV-SFNAKDIQIP 458

Query: 107 TYH--DG-----FCESLNP 118
            Y   DG        S++ 
Sbjct: 459 VYDTFDGSDLRVLSGSISE 477



 Score = 31.8 bits (72), Expect = 0.037
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 23/68 (33%)

Query: 60  SWDHLEQ-----IRTL-------HE---KLALNSSLLESYLDAAR-------VVADLFKK 97
           SW+         I  L       +E     +L  S+LE  L+           +++L ++
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347

Query: 98  QLQE-IDA 104
           Q+Q+ ++ 
Sbjct: 348 QVQDYVNK 355



 Score = 25.3 bits (55), Expect = 4.3
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 42/129 (32%)

Query: 10   QTVLKRVIAVIDNENKNLKNNSQFDISISND-----H----KGRCLHE-LSVLI------ 53
            Q V  R     DN  K+    S  DI I+N      H    KG+ + E  S +I      
Sbjct: 1643 QDVWNRA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698

Query: 54   --LSCEEISWDHLEQIRTLH----EKLALNS--------SLLESYLDAARVVADLFKKQL 99
              L  E+I +  + +  T +    EK  L++        +L+E    AA    DL  K L
Sbjct: 1699 GKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK---AA--FEDLKSKGL 1752

Query: 100  QEIDADGTY 108
              I AD T+
Sbjct: 1753 --IPADATF 1759


>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structural genomics,
           PSI-2, protein structure initiative, midwest center for
           structural genomics; HET: MSE; 2.10A {Rhodococcus SP}
          Length = 414

 Score = 28.1 bits (61), Expect = 0.54
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 85  LDAARVVADLFKKQLQEIDADGTYHDGFCESL 116
           LD   VVA+  + Q  + +AD    D     L
Sbjct: 26  LDRIEVVAEEIRGQAVQSEADCRLTDAAAGLL 57


>3o4x_E Protein diaphanous homolog 1; autoinhibition, actin nucleator,
           actin binding, protein BIND; 3.20A {Mus musculus} PDB:
           2bap_D
          Length = 467

 Score = 27.1 bits (59), Expect = 1.2
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 8   RIQTVLKRVIAVIDNENKNLKNNSQFDISI----------SNDHKGRCLHELSVLILSCE 57
              ++L+  + V +  N   +N   F  +I          S D K   LH L+ L  +  
Sbjct: 222 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDH 281

Query: 58  EISWDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFCESLN 117
                  +++  + +   +++  L+  LD  +      ++ +Q   A     D F E + 
Sbjct: 282 PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMT 341

Query: 118 P 118
            
Sbjct: 342 S 342


>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A
           {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
           1zny_A* 1znz_A* 1s4q_A 1z8f_A
          Length = 207

 Score = 25.7 bits (55), Expect = 2.7
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 8   RIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILS 55
           R       +   +D     L     FD  + N        EL  L++ 
Sbjct: 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201


>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
           potassium channel, KV1.2, gating charges, no analysis,
           acetylation; HET: NAP; 2.90A {Rattus norvegicus}
          Length = 367

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 81  LESYLDAARVVADLFKKQLQEIDA 104
           L   + A +V+  L    + EID+
Sbjct: 330 LMENIGAIQVLPKLSSSIVHEIDS 353


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 24.5 bits (52), Expect = 5.9
 Identities = 6/9 (66%), Positives = 9/9 (100%)

Query: 96  KKQLQEIDA 104
           +K+LQE+DA
Sbjct: 95  RKRLQELDA 103


>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix,
           oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis}
           SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
          Length = 209

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 8/43 (18%), Positives = 11/43 (25%)

Query: 62  DHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDA 104
            H          L L        +  AR     +K  L+E   
Sbjct: 151 KHWRAFVEHLNALNLTPEAEAEAIQGAREAFAFYKVVLRETFG 193


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,013,703
Number of extensions: 39306
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 13
Length of query: 123
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 42
Effective length of database: 3,729,466
Effective search space: 156637572
Effective search space used: 156637572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)