HHsearch alignment for GI: 254780509 and conserved domain: TIGR02541
>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ; InterPro: IPR013377 The N-terminal region of this protein acts directly in flagellar rod assembly, while the C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring .; GO: 0016798 hydrolase activity acting on glycosyl bonds, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=99.89 E-value=2.5e-23 Score=147.75 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=72.1
Q ss_pred HHHCCHHHHHHHHCCCCHH--HHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3120789999987022855--4799--999999999999999999510211233--575333689999999999999980
Q gi|254780509|r 27 SSFQSFLQLKDVQEACDKS--KSVP--EMTQKLQGIMFQYFIKSILPEETVKSL--GGGFNGDFWQEILAENISDVIVKQ 100 (112)
Q Consensus 27 ~s~q~~~~Lk~~~~~~~~~--~~l~--~~a~~fEa~fl~~~lksmr~~~~~~~l--ggg~a~d~~~sMl~ee~a~~iAk~ 100 (112)
T Consensus 3 ~D~~~L~~Lk~-kA~~dP~dG~~~~~~~~ArQFEalF~~mMLKsMReAt~k~glni~~S~~~~~y~~m~DqQ~a~~L~~~ 81 (332)
T TIGR02541 3 IDAQSLDELKA-KAVKDPKDGEAAKLTEAARQFEALFLNMMLKSMREATPKDGLNIFDSQQTRFYQQMLDQQLAQQLSAR 81 (332)
T ss_pred CCHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 16467999998-85028810799886688889999998624455440478887653255316788635489999998458
Q ss_pred CCCCCC
Q ss_conf 798756
Q gi|254780509|r 101 QRITLD 106 (112)
Q Consensus 101 ggiGL~ 106 (112)
T Consensus 82 ~GiGLA 87 (332)
T TIGR02541 82 KGIGLA 87 (332)
T ss_pred CCCCHH
T ss_conf 997689