HHsearch alignment for GI: 254780509 and conserved domain: TIGR02541

>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ; InterPro: IPR013377 The N-terminal region of this protein acts directly in flagellar rod assembly, while the C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring .; GO: 0016798 hydrolase activity acting on glycosyl bonds, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=99.89  E-value=2.5e-23  Score=147.75  Aligned_cols=79  Identities=18%  Similarity=0.307  Sum_probs=72.1

Q ss_pred             HHHCCHHHHHHHHCCCCHH--HHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3120789999987022855--4799--999999999999999999510211233--575333689999999999999980
Q gi|254780509|r   27 SSFQSFLQLKDVQEACDKS--KSVP--EMTQKLQGIMFQYFIKSILPEETVKSL--GGGFNGDFWQEILAENISDVIVKQ  100 (112)
Q Consensus        27 ~s~q~~~~Lk~~~~~~~~~--~~l~--~~a~~fEa~fl~~~lksmr~~~~~~~l--ggg~a~d~~~sMl~ee~a~~iAk~  100 (112)
T Consensus         3 ~D~~~L~~Lk~-kA~~dP~dG~~~~~~~~ArQFEalF~~mMLKsMReAt~k~glni~~S~~~~~y~~m~DqQ~a~~L~~~   81 (332)
T TIGR02541         3 IDAQSLDELKA-KAVKDPKDGEAAKLTEAARQFEALFLNMMLKSMREATPKDGLNIFDSQQTRFYQQMLDQQLAQQLSAR   81 (332)
T ss_pred             CCHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             16467999998-85028810799886688889999998624455440478887653255316788635489999998458


Q ss_pred             CCCCCC
Q ss_conf             798756
Q gi|254780509|r  101 QRITLD  106 (112)
Q Consensus       101 ggiGL~  106 (112)
T Consensus        82 ~GiGLA   87 (332)
T TIGR02541        82 KGIGLA   87 (332)
T ss_pred             CCCCHH
T ss_conf             997689