BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780509|ref|YP_003064922.1| hypothetical protein
CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62]
(112 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780509|ref|YP_003064922.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040186|gb|ACT56982.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 112
Score = 226 bits (576), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF 60
MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF
Sbjct: 1 MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF 60
Query: 61 QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112
QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK
Sbjct: 61 QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112
>gi|315122294|ref|YP_004062783.1| hypothetical protein CKC_02730 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495696|gb|ADR52295.1| hypothetical protein CKC_02730 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 101
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 80/101 (79%), Gaps = 3/101 (2%)
Query: 15 MGGNLAKISQDD---SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
M NL KI ++ SF SFLQ K+VQ+ D+SK +PE QKLQG+MFQYFIKSILPEE
Sbjct: 1 MDSNLTKIVPNNYSSESFSSFLQTKNVQKTSDQSKYIPEAMQKLQGVMFQYFIKSILPEE 60
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112
T+KSLGGGF GDFW+EILAENIS+VIVKQQRIT +L SK
Sbjct: 61 TIKSLGGGFYGDFWKEILAENISNVIVKQQRITFNLSNTSK 101
>gi|307318939|ref|ZP_07598370.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti AK83]
gi|306895353|gb|EFN26108.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti AK83]
Length = 174
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
++K +PE +K + ++ Q F+KS+LP E+ G G +GD W+ ++AE I DV+ K
Sbjct: 63 EAKKIPETYRKFEAMVLQNFVKSMLPSESENVFGKGTSGDIWKSMMAEQIGDVLAK 118
>gi|15964442|ref|NP_384795.1| hypothetical protein SMc03071 [Sinorhizobium meliloti 1021]
gi|307311584|ref|ZP_07591225.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti BL225C]
gi|15073619|emb|CAC45261.1| Hypothetical protein SMc03071 [Sinorhizobium meliloti 1021]
gi|306899601|gb|EFN30230.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti BL225C]
Length = 184
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
++K +PE +K + ++ Q F+KS+LP E+ G G +GD W+ ++AE I DV+ K
Sbjct: 73 EAKKIPETYRKFEAMVLQNFVKSMLPSESENVFGKGTSGDIWKSMMAEQIGDVLAK 128
>gi|150395513|ref|YP_001325980.1| hypothetical protein Smed_0286 [Sinorhizobium medicae WSM419]
gi|150027028|gb|ABR59145.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 183
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
++K +PE +K + ++ Q F+KS+LP ++ G G +GD W+ ++AE I DV+ K I
Sbjct: 72 EAKKIPETYRKFEAMVLQNFVKSMLPSDSENVYGKGTSGDIWKSMMAEQIGDVLSKGGGI 131
Query: 104 TL 105
+
Sbjct: 132 GI 133
>gi|116250510|ref|YP_766348.1| hypothetical protein RL0738 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255158|emb|CAK06232.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 187
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + +V+ K
Sbjct: 72 KTEEVPESYRKFEAMVLQNFVKSMLPNESEDVYGKGATGDIWKGMMAEQLGNVMAK 127
>gi|209547956|ref|YP_002279873.1| hypothetical protein Rleg2_0348 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533712|gb|ACI53647.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 187
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K
Sbjct: 72 KAEEVPESYRKFEAMVLQNFVKSMLPNESEDVYGKGATGDIWKGMMAEQLGNTMAK 127
>gi|86356340|ref|YP_468232.1| hypothetical protein RHE_CH00689 [Rhizobium etli CFN 42]
gi|86280442|gb|ABC89505.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 187
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K
Sbjct: 72 KTEEVPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWKGMMAEQLGNTMAK 127
>gi|218463241|ref|ZP_03503332.1| hypothetical protein RetlK5_29124 [Rhizobium etli Kim 5]
Length = 168
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K
Sbjct: 53 KAEEVPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWKGMMAEQLGNTMAK 108
>gi|241203134|ref|YP_002974230.1| hypothetical protein Rleg_0380 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857024|gb|ACS54691.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 187
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
K++ PE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + +V+ K
Sbjct: 72 KAEEAPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWKGMMAEQLGNVMAK 127
>gi|190890392|ref|YP_001976934.1| hypothetical protein RHECIAT_CH0000767 [Rhizobium etli CIAT 652]
gi|218516756|ref|ZP_03513596.1| hypothetical protein Retl8_25663 [Rhizobium etli 8C-3]
gi|190695671|gb|ACE89756.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 187
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K
Sbjct: 72 KAEEVPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWKGMMAEQLGNTMAK 127
>gi|218509487|ref|ZP_03507365.1| hypothetical protein RetlB5_19244 [Rhizobium etli Brasil 5]
Length = 168
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K
Sbjct: 53 KAEEVPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWKGMMAEQLGNTMAK 108
>gi|227820885|ref|YP_002824855.1| hypothetical protein NGR_c03040 [Sinorhizobium fredii NGR234]
gi|227339884|gb|ACP24102.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length = 181
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
K VPE +K + ++ Q F+KS+LP E+ G G +G+ W+ ++AE I++V+
Sbjct: 74 KKVPETYRKFEAMVLQNFVKSMLPSESESVFGKGTSGEVWKGMMAEQIANVLA 126
>gi|110632630|ref|YP_672838.1| hypothetical protein Meso_0269 [Mesorhizobium sp. BNC1]
gi|110283614|gb|ABG61673.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 178
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 11 HSQSMGGNLAKISQDDSSFQ-SFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILP 69
+++ L +++ D+ F+ ++ A VPE + + ++ + F++S+LP
Sbjct: 21 QAEAARARLQSLAKPDTPFEDPAVERTAAVRAEPAGTGVPESFMRFEALVLESFMQSMLP 80
Query: 70 EETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E GGG +G+ W+ +LA+ + + + K+ I +
Sbjct: 81 AENDAVFGGGLSGEMWRGLLAQQLGETLAKRGGIGI 116
>gi|254473405|ref|ZP_05086802.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957521|gb|EEA92724.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 160
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
++ +KL+ + Q F+KS+LP+E GGG G W+ ++AE +++ + K I L
Sbjct: 87 DLGEKLESAILQTFVKSMLPKEMETVYGGGTAGTMWKGLMAEQLANQLAKSGSIGL 142
>gi|13472616|ref|NP_104183.1| hypothetical protein mlr2964 [Mesorhizobium loti MAFF303099]
gi|14023362|dbj|BAB49969.1| mlr2964 [Mesorhizobium loti MAFF303099]
Length = 209
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
+K + ++ Q FI+++LP++T G G GD W+ LAE ++DV+ ++ I
Sbjct: 92 KKFEAMVLQTFIQNMLPKDTEGVYGTGLAGDMWKSQLAERVADVMAERGGI 142
>gi|319781645|ref|YP_004141121.1| flagellar protein FlgJ-like protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167533|gb|ADV11071.1| Flagellar protein FlgJ-like protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 180
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + ++ Q FI+++LP++T G G GD W+ LAE ++DV+ ++ I +
Sbjct: 63 KKFEAMVLQTFIQNMLPKDTEGVYGKGLAGDMWKSQLAERVADVMAERGGIGI 115
>gi|260466578|ref|ZP_05812766.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259029584|gb|EEW30872.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 180
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + ++ Q FI+++LP++T G G GD W+ LAE ++DV+ + I +
Sbjct: 63 KKFEAMVLQTFIQNMLPKDTEGVYGTGLAGDMWKSQLAERVADVMADRGGIGI 115
>gi|222147599|ref|YP_002548556.1| hypothetical protein Avi_0776 [Agrobacterium vitis S4]
gi|221734587|gb|ACM35550.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 210
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVI 97
K+ +P+ ++ +GI+ Q FI ++LP+++ G G G+ W+ ++AE I + I
Sbjct: 85 KASDIPKPYRQYEGIVLQNFISNMLPKDSEAVFGKGNAGEIWKSMMAEQIGNTI 138
>gi|225628419|ref|ZP_03786453.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|237817493|ref|ZP_04596484.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|225616265|gb|EEH13313.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|237787328|gb|EEP61545.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
Length = 233
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A ++QD+ F SF + +V D + +K + M Q F++S+ +
Sbjct: 76 MGGSAATGLTQDN--FGSFSENLAAEVSVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 133
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIV 98
T + G G G++W+ ++AE +++ +
Sbjct: 134 TTATFGKGIAGEYWKSMMAEAMANKMA 160
>gi|163845448|ref|YP_001623103.1| hypothetical protein BSUIS_B1356 [Brucella suis ATCC 23445]
gi|163676171|gb|ABY40281.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 196
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A ++QD+ F SF + +V D + +K + M Q F++S+ +
Sbjct: 39 MGGSAATGLTQDN--FGSFSENLAAEVSVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 96
Query: 72 TVKSLGGGFNGDFWQEILAENISD 95
T + G G G++W+ ++AE +++
Sbjct: 97 TTATFGKGIAGEYWKSMMAEAMAN 120
>gi|23500844|ref|NP_700284.1| hypothetical protein BRA1129 [Brucella suis 1330]
gi|62317948|ref|YP_223801.1| hypothetical protein BruAb2_1066 [Brucella abortus bv. 1 str.
9-941]
gi|83269925|ref|YP_419216.1| flagellar protein FlgJ [Brucella melitensis biovar Abortus 2308]
gi|161621172|ref|YP_001595058.1| hypothetical protein BCAN_B1158 [Brucella canis ATCC 23365]
gi|189023199|ref|YP_001932940.1| Flagellar protein FlgJ [Brucella abortus S19]
gi|225686876|ref|YP_002734848.1| hypothetical protein BMEA_B1123 [Brucella melitensis ATCC 23457]
gi|254691622|ref|ZP_05154876.1| hypothetical protein Babob68_16087 [Brucella abortus bv. 6 str.
870]
gi|254695082|ref|ZP_05156910.1| hypothetical protein Babob3T_10598 [Brucella abortus bv. 3 str.
Tulya]
gi|254698179|ref|ZP_05160007.1| hypothetical protein Babob28_10830 [Brucella abortus bv. 2 str.
86/8/59]
gi|254699254|ref|ZP_05161082.1| hypothetical protein Bsuib55_00092 [Brucella suis bv. 5 str. 513]
gi|254702373|ref|ZP_05164201.1| hypothetical protein Bsuib36_00075 [Brucella suis bv. 3 str. 686]
gi|254706506|ref|ZP_05168334.1| hypothetical protein BpinM_05852 [Brucella pinnipedialis
M163/99/10]
gi|254711209|ref|ZP_05173020.1| hypothetical protein BpinB_13300 [Brucella pinnipedialis B2/94]
gi|254711809|ref|ZP_05173620.1| hypothetical protein BcetM6_00065 [Brucella ceti M644/93/1]
gi|254714877|ref|ZP_05176688.1| hypothetical protein BcetM_00065 [Brucella ceti M13/05/1]
gi|254731624|ref|ZP_05190202.1| hypothetical protein Babob42_10640 [Brucella abortus bv. 4 str.
292]
gi|256015888|ref|YP_003105897.1| hypothetical protein BMI_II1135 [Brucella microti CCM 4915]
gi|256030162|ref|ZP_05443776.1| hypothetical protein BpinM2_05860 [Brucella pinnipedialis
M292/94/1]
gi|256042855|ref|ZP_05445801.1| hypothetical protein Bmelb1R_00125 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059814|ref|ZP_05450009.1| hypothetical protein Bneo5_05655 [Brucella neotomae 5K33]
gi|256112186|ref|ZP_05453107.1| hypothetical protein Bmelb3E_05792 [Brucella melitensis bv. 3 str.
Ether]
gi|256158341|ref|ZP_05456245.1| hypothetical protein BcetM4_05792 [Brucella ceti M490/95/1]
gi|256252725|ref|ZP_05458261.1| hypothetical protein BcetB_00090 [Brucella ceti B1/94]
gi|256256809|ref|ZP_05462345.1| hypothetical protein Babob9C_05515 [Brucella abortus bv. 9 str.
C68]
gi|256261989|ref|ZP_05464521.1| flagellar protein FlgJ [Brucella melitensis bv. 2 str. 63/9]
gi|260166786|ref|ZP_05753597.1| hypothetical protein BruF5_00075 [Brucella sp. F5/99]
gi|260544132|ref|ZP_05819953.1| flagellar protein FlgJ [Brucella abortus NCTC 8038]
gi|260564093|ref|ZP_05834578.1| flagellar protein FlgJ [Brucella melitensis bv. 1 str. 16M]
gi|260568724|ref|ZP_05839193.1| flagellar protein FlgJ [Brucella suis bv. 4 str. 40]
gi|260757252|ref|ZP_05869600.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260759383|ref|ZP_05871731.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260762626|ref|ZP_05874958.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883056|ref|ZP_05894670.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261215434|ref|ZP_05929715.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|261216566|ref|ZP_05930847.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261219803|ref|ZP_05934084.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313961|ref|ZP_05953158.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318800|ref|ZP_05957997.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261319437|ref|ZP_05958634.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261323794|ref|ZP_05962991.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261749692|ref|ZP_05993401.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261752936|ref|ZP_05996645.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756163|ref|ZP_05999872.1| flagellar protein FlgJ [Brucella sp. F5/99]
gi|265987193|ref|ZP_06099750.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265989291|ref|ZP_06101848.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993613|ref|ZP_06106170.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996856|ref|ZP_06109413.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294852957|ref|ZP_06793629.1| hypothetical protein BAZG_01894 [Brucella sp. NVSL 07-0026]
gi|297250160|ref|ZP_06933861.1| hypothetical protein BAYG_02948 [Brucella abortus bv. 5 str. B3196]
gi|23464508|gb|AAN34289.1| conserved hypothetical protein [Brucella suis 1330]
gi|62198141|gb|AAX76440.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82940199|emb|CAJ13252.1| Flagellar protein FlgJ [Brucella melitensis biovar Abortus 2308]
gi|161337983|gb|ABX64287.1| Hypothetical protein BCAN_B1158 [Brucella canis ATCC 23365]
gi|189021773|gb|ACD74494.1| Flagellar protein FlgJ [Brucella abortus S19]
gi|225642981|gb|ACO02894.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|255998548|gb|ACU50235.1| hypothetical protein BMI_II1135 [Brucella microti CCM 4915]
gi|260097403|gb|EEW81277.1| flagellar protein FlgJ [Brucella abortus NCTC 8038]
gi|260151736|gb|EEW86829.1| flagellar protein FlgJ [Brucella melitensis bv. 1 str. 16M]
gi|260155389|gb|EEW90470.1| flagellar protein FlgJ [Brucella suis bv. 4 str. 40]
gi|260669701|gb|EEX56641.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673047|gb|EEX59868.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677360|gb|EEX64181.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260872584|gb|EEX79653.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917041|gb|EEX83902.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260918387|gb|EEX85040.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260921655|gb|EEX88223.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292127|gb|EEX95623.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261298023|gb|EEY01520.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299774|gb|EEY03271.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302987|gb|EEY06484.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261736147|gb|EEY24143.1| flagellar protein FlgJ [Brucella sp. F5/99]
gi|261739445|gb|EEY27371.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261742689|gb|EEY30615.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262551153|gb|EEZ07314.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262764483|gb|EEZ10515.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|262999960|gb|EEZ12650.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263091473|gb|EEZ16009.1| flagellar protein FlgJ [Brucella melitensis bv. 2 str. 63/9]
gi|264659390|gb|EEZ29651.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|294818612|gb|EFG35612.1| hypothetical protein BAZG_01894 [Brucella sp. NVSL 07-0026]
gi|297174029|gb|EFH33393.1| hypothetical protein BAYG_02948 [Brucella abortus bv. 5 str. B3196]
gi|326411292|gb|ADZ68356.1| Flagellar protein FlgJ [Brucella melitensis M28]
gi|326554581|gb|ADZ89220.1| Flagellar protein FlgJ [Brucella melitensis M5-90]
Length = 196
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A ++QD+ F SF + +V D + +K + M Q F++S+ +
Sbjct: 39 MGGSAATGLTQDN--FGSFSENLAAEVSVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 96
Query: 72 TVKSLGGGFNGDFWQEILAENISD 95
T + G G G++W+ ++AE +++
Sbjct: 97 TTATFGKGIAGEYWKSMMAEAMAN 120
>gi|148557980|ref|YP_001257994.1| hypothetical protein BOV_A1034 [Brucella ovis ATCC 25840]
gi|148369265|gb|ABQ62137.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 210
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A ++QD+ F SF + +V D + +K + M Q F++S+ +
Sbjct: 53 MGGSAATGLTQDN--FGSFSENLAAEVSVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 110
Query: 72 TVKSLGGGFNGDFWQEILAENISD 95
T + G G G++W+ ++AE +++
Sbjct: 111 TTATFGKGIAGEYWKSMMAEAMAN 134
>gi|218681683|ref|ZP_03529484.1| hypothetical protein RetlC8_23443 [Rhizobium etli CIAT 894]
Length = 116
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQ 86
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+
Sbjct: 72 KAEEVPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWK 114
>gi|325291972|ref|YP_004277836.1| hypothetical protein AGROH133_04007 [Agrobacterium sp. H13-3]
gi|325059825|gb|ADY63516.1| hypothetical protein AGROH133_04007 [Agrobacterium sp. H13-3]
Length = 185
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 48 VPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
VPE +K + + Q F+ ++LP+++ + G G G+ W+ ++AE +D I +
Sbjct: 76 VPETYRKYEASVLQTFVANMLPKDSEEVYGKGNAGEIWKSMMAEQFADTISR 127
>gi|17988514|ref|NP_541147.1| flagellar protein FLGJ [Brucella melitensis bv. 1 str. 16M]
gi|17984307|gb|AAL53411.1| flagellar protein flgj [Brucella melitensis bv. 1 str. 16M]
Length = 158
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A ++QD+ F SF + +V D + +K + M Q F++S+ +
Sbjct: 1 MGGSAATGLTQDN--FGSFSENLAAEVSVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 58
Query: 72 TVKSLGGGFNGDFWQEILAENISD 95
T + G G G++W+ ++AE +++
Sbjct: 59 TTATFGKGIAGEYWKSMMAEAMAN 82
>gi|115523203|ref|YP_780114.1| hypothetical protein RPE_1182 [Rhodopseudomonas palustris BisA53]
gi|115517150|gb|ABJ05134.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length = 162
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + + Q F++S+LP++ + G G +G W+ +LAE IS+ + K I +
Sbjct: 92 RKFEAFILQMFVESMLPKDATEVFGKGTSGTVWRSMLAEQISNEMAKGNGIGI 144
>gi|159184375|ref|NP_353610.2| hypothetical protein Atu0584 [Agrobacterium tumefaciens str. C58]
gi|159139688|gb|AAK86395.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 175
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 48 VPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
+PE +K + + Q F+ ++LP+++ + G G G+ W+ ++AE +D I +
Sbjct: 66 IPETYRKYEASVLQTFVANMLPKDSEEVYGKGNAGEIWKSMMAEQFADTISR 117
>gi|306841285|ref|ZP_07473996.1| flagellar protein FLGJ [Brucella sp. BO2]
gi|306288687|gb|EFM60018.1| flagellar protein FLGJ [Brucella sp. BO2]
Length = 196
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A +++D+ F SF + +V D + +K + M Q F++S+ +
Sbjct: 39 MGGSAATGLTRDN--FGSFSENLAAEVGVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 96
Query: 72 TVKSLGGGFNGDFWQEILAENISD 95
T + G G G++W+ ++AE +++
Sbjct: 97 TTATFGKGIAGEYWKSMMAEAMAN 120
>gi|254720782|ref|ZP_05182593.1| hypothetical protein Bru83_15037 [Brucella sp. 83/13]
gi|265985841|ref|ZP_06098576.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306840127|ref|ZP_07472912.1| flagellar protein FLGJ [Brucella sp. NF 2653]
gi|264664433|gb|EEZ34694.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306404772|gb|EFM61066.1| flagellar protein FLGJ [Brucella sp. NF 2653]
Length = 196
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A +++D+ F SF + +V D + +K + M Q F++S+ +
Sbjct: 39 MGGSAATGLTRDN--FGSFSENLAAEVGVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 96
Query: 72 TVKSLGGGFNGDFWQEILAENISD 95
T + G G G++W+ ++AE +++
Sbjct: 97 TTATFGKGIAGEYWKSMMAEAMAN 120
>gi|306845409|ref|ZP_07477983.1| flagellar protein FLGJ [Brucella sp. BO1]
gi|306274152|gb|EFM55968.1| flagellar protein FLGJ [Brucella sp. BO1]
Length = 196
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 15 MGGNLAK-ISQDDSSFQSFLQ--LKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
MGG+ A +++D+ F SF + V D + +K + M Q F++S+ +
Sbjct: 39 MGGSAATGLARDN--FGSFSENLAAGVSVRPDAQSAASPAYRKFEAFMLQSFVQSMFTSD 96
Query: 72 TVKSLGGGFNGDFWQEILAENISD 95
T + G G G++W+ ++AE +++
Sbjct: 97 TTATFGKGIAGEYWKSMMAEAMAN 120
>gi|27381960|ref|NP_773489.1| hypothetical protein bll6849 [Bradyrhizobium japonicum USDA 110]
gi|27355130|dbj|BAC52114.1| bll6849 [Bradyrhizobium japonicum USDA 110]
Length = 170
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
K+ + E+ +K + + Q F++++LP+E+ + G G G W+ +LAE + + + K + I
Sbjct: 90 KAPASGEVYRKFEAFILQTFVETMLPKESEELFGKGTAGSVWKSMLAEQLGNQLAKGKGI 149
Query: 104 TL 105
+
Sbjct: 150 GI 151
>gi|328545478|ref|YP_004305587.1| hypothetical protein SL003B_3862 [polymorphum gilvum SL003B-26A1]
gi|326415219|gb|ADZ72282.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1]
Length = 149
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
QK + ++ Q F++S+LP++ G G G W+ +LAE I I + I
Sbjct: 85 QKFEALVLQQFVESMLPDDAESVFGSGTAGGIWKSMLAEQIGTQIAARGGI 135
>gi|170744554|ref|YP_001773209.1| hypothetical protein M446_6518 [Methylobacterium sp. 4-46]
gi|168198828|gb|ACA20775.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 153
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 37 DVQEACDKSKSVPEMTQK--------LQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEI 88
D Q A +KS ++ K + + Q+F++++LP + G G G +W+ +
Sbjct: 57 DAQGALTAAKSDTALSAKKAAGPYRQFESFVLQHFVETMLPSKASSVYGKGMAGGYWKSM 116
Query: 89 LAENISDVIVK 99
LAE I I K
Sbjct: 117 LAEQIGGQIAK 127
>gi|163758042|ref|ZP_02165130.1| hypothetical protein HPDFL43_00415 [Hoeflea phototrophica DFL-43]
gi|162284331|gb|EDQ34614.1| hypothetical protein HPDFL43_00415 [Hoeflea phototrophica DFL-43]
Length = 201
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
E Q+ + ++ Q FI S+LP+++ + G G G+ W+ ++AE + V+ K
Sbjct: 84 ETYQRFEAMILQKFIGSMLPQDSEELYGKGTAGEIWKGMMAEQLGMVLAK 133
>gi|239834417|ref|ZP_04682745.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
gi|239822480|gb|EEQ94049.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
Length = 207
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 43 DKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISD 95
D + +K + M Q F++S+ +T + G G G++W+ ++AE +++
Sbjct: 78 DAQNAASPAYRKFEAFMLQSFVQSMFTSDTTATFGKGIAGEYWKSMMAEAMAN 130
>gi|153011498|ref|YP_001372712.1| hypothetical protein Oant_4183 [Ochrobactrum anthropi ATCC 49188]
gi|151563386|gb|ABS16883.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 205
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 43 DKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISD 95
D + +K + M Q F++S+ +T + G G G++W+ ++AE +++
Sbjct: 77 DAQNAASPAYRKFEAFMLQSFVQSMFTSDTTATFGKGIAGEYWKSMMAEAMAN 129
>gi|222084895|ref|YP_002543424.1| hypothetical protein Arad_0923 [Agrobacterium radiobacter K84]
gi|221722343|gb|ACM25499.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 198
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 48 VPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQ 100
VP++ +K + ++ Q F+K++LP ET+ G G G+ W+ ++AE + + + K
Sbjct: 76 VPQVYRKFEAMVLQNFVKNMLPNSETL--YGKGSAGEIWKGMMAEQMGNTLAKN 127
>gi|114705548|ref|ZP_01438451.1| hypothetical protein FP2506_13819 [Fulvimarina pelagi HTCC2506]
gi|114538394|gb|EAU41515.1| hypothetical protein FP2506_13819 [Fulvimarina pelagi HTCC2506]
Length = 118
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
Q+ + + F++S+LP E G G G+ W+ ++AE I + I +
Sbjct: 26 QEFESFALRSFVESMLPSEASNFFGSGTAGNIWRSMMAEQIGEQITR 72
>gi|90422634|ref|YP_531004.1| hypothetical protein RPC_1121 [Rhodopseudomonas palustris BisB18]
gi|90104648|gb|ABD86685.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 160
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + + Q F++S+LP++ + G G G W+ +LAE I + + K I +
Sbjct: 91 RKFEAFILQMFVESMLPKDANEVFGKGTAGTIWRSMLAEQIGNEMSKGNGIGI 143
>gi|182680486|ref|YP_001834632.1| hypothetical protein Bind_3587 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182636369|gb|ACB97143.1| hypothetical protein Bind_3587 [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 169
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 5 PISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQK---------- 54
PIS I + +G S +D F L V + S S+P K
Sbjct: 19 PISPIMARERLGSTDGSSSTNDVHFSHILD--GVGSSEPPSHSLPLFLPKPRLETPSPNT 76
Query: 55 -------LQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQ 100
L+ ++ + F++++LP+ T G G G+ W+ ++A+ +S I K+
Sbjct: 77 RTKVFKDLETVLLRNFVEAMLPKNTEDVFGHGTAGNIWKSMMADQLSKEIGKR 129
>gi|198419942|ref|XP_002120623.1| PREDICTED: similar to TAF5-like RNA polymerase II,
p300/CBP-associated factor (PCAF)-associated factor
[Ciona intestinalis]
Length = 628
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 2 QVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQ 61
+VL + IS S S+ ++ + D F SFL+LK E C + KL+GI+F
Sbjct: 45 RVLRNNKISKSDSVSFSIGSL---DDYFHSFLELKTFVEKCVAQRK----HSKLKGILFP 97
Query: 62 YFIKSIL--------PEET--VKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPE 109
FI S L E T ++ G F D +L + I ++ + Q + LD+ E
Sbjct: 98 VFIHSFLDLLLADRSTESTSYLRRFGSVF--DQSHRLLIKQIENLGIPQDQANLDMIE 153
>gi|125624141|ref|YP_001032624.1| hypothetical protein llmg_1321 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492949|emb|CAL97912.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070916|gb|ADJ60316.1| hypothetical protein LLNZ_06830 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 393
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 62 YF-IKSILPEETVKSLGGGFNGDFWQEILAEN 92
YF +++ILPEETV S GF +W+E EN
Sbjct: 212 YFRLRNILPEETVISFHDGFELHYWKEFFKEN 243
>gi|118589956|ref|ZP_01547360.1| hypothetical protein SIAM614_14865 [Stappia aggregata IAM 12614]
gi|118437453|gb|EAV44090.1| hypothetical protein SIAM614_14865 [Stappia aggregata IAM 12614]
Length = 140
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 52 TQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + ++ F++++LP+++ G G G+ W+ +LAE +++ + + +
Sbjct: 73 AEKFEAMILGQFVETMLPDDSEAVFGSGTAGEIWKSMLAEQVANQLAASGGVGI 126
>gi|254505050|ref|ZP_05117201.1| hypothetical protein SADFL11_5090 [Labrenzia alexandrii DFL-11]
gi|222441121|gb|EEE47800.1| hypothetical protein SADFL11_5090 [Labrenzia alexandrii DFL-11]
Length = 143
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 42 CDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENIS 94
D S +K + ++ F++++LP++ G G G+ W+ +LAE ++
Sbjct: 66 ADAGASQKSPAEKFEAMILTQFVETMLPKDAEMVFGKGTTGEIWKSMLAEQVA 118
Searching..................................................done
Results from round 2
>gi|254780509|ref|YP_003064922.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040186|gb|ACT56982.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 112
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF 60
MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF
Sbjct: 1 MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF 60
Query: 61 QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112
QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK
Sbjct: 61 QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112
>gi|110632630|ref|YP_672838.1| hypothetical protein Meso_0269 [Mesorhizobium sp. BNC1]
gi|110283614|gb|ABG61673.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 178
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 11 HSQSMGGNLAKISQDDSSFQ-SFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILP 69
+++ L +++ D+ F+ ++ A VPE + + ++ + F++S+LP
Sbjct: 21 QAEAARARLQSLAKPDTPFEDPAVERTAAVRAEPAGTGVPESFMRFEALVLESFMQSMLP 80
Query: 70 EETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E GGG +G+ W+ +LA+ + + + K+ I +
Sbjct: 81 AENDAVFGGGLSGEMWRGLLAQQLGETLAKRGGIGI 116
>gi|315122294|ref|YP_004062783.1| hypothetical protein CKC_02730 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495696|gb|ADR52295.1| hypothetical protein CKC_02730 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 101
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 69/101 (68%), Positives = 80/101 (79%), Gaps = 3/101 (2%)
Query: 15 MGGNLAKISQDD---SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
M NL KI ++ SF SFLQ K+VQ+ D+SK +PE QKLQG+MFQYFIKSILPEE
Sbjct: 1 MDSNLTKIVPNNYSSESFSSFLQTKNVQKTSDQSKYIPEAMQKLQGVMFQYFIKSILPEE 60
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112
T+KSLGGGF GDFW+EILAENIS+VIVKQQRIT +L SK
Sbjct: 61 TIKSLGGGFYGDFWKEILAENISNVIVKQQRITFNLSNTSK 101
>gi|150395513|ref|YP_001325980.1| hypothetical protein Smed_0286 [Sinorhizobium medicae WSM419]
gi|150027028|gb|ABR59145.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 183
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 1 MQVLPISNISHSQSMGGNL---------AKISQDDSSFQSFLQLKDVQEACD-------- 43
M V+ ++ + Q L ++++ F + + + + E
Sbjct: 11 MDVVRAADPAEVQEAQARLKANRAAFQATSLAENGDGFAAAVSVLNTSEGSSGLGDISNR 70
Query: 44 -KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQR 102
++K +PE +K + ++ Q F+KS+LP ++ G G +GD W+ ++AE I DV+ K
Sbjct: 71 AEAKKIPETYRKFEAMVLQNFVKSMLPSDSENVYGKGTSGDIWKSMMAEQIGDVLSKGGG 130
Query: 103 ITL 105
I +
Sbjct: 131 IGI 133
>gi|307318939|ref|ZP_07598370.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti AK83]
gi|306895353|gb|EFN26108.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti AK83]
Length = 174
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
++K +PE +K + ++ Q F+KS+LP E+ G G +GD W+ ++AE I DV+ K I
Sbjct: 63 EAKKIPETYRKFEAMVLQNFVKSMLPSESENVFGKGTSGDIWKSMMAEQIGDVLAKGGGI 122
Query: 104 TL 105
+
Sbjct: 123 GI 124
>gi|15964442|ref|NP_384795.1| hypothetical protein SMc03071 [Sinorhizobium meliloti 1021]
gi|307311584|ref|ZP_07591225.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti BL225C]
gi|15073619|emb|CAC45261.1| Hypothetical protein SMc03071 [Sinorhizobium meliloti 1021]
gi|306899601|gb|EFN30230.1| Flagellar protein FlgJ-like protein [Sinorhizobium meliloti BL225C]
Length = 184
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
++K +PE +K + ++ Q F+KS+LP E+ G G +GD W+ ++AE I DV+ K I
Sbjct: 73 EAKKIPETYRKFEAMVLQNFVKSMLPSESENVFGKGTSGDIWKSMMAEQIGDVLAKGGGI 132
Query: 104 TL 105
+
Sbjct: 133 GI 134
>gi|227820885|ref|YP_002824855.1| hypothetical protein NGR_c03040 [Sinorhizobium fredii NGR234]
gi|227339884|gb|ACP24102.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length = 181
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 20 AKISQDDSSFQSFLQLKDVQEACD---------KSKSVPEMTQKLQGIMFQYFIKSILPE 70
++++ + F + + + + E + K VPE +K + ++ Q F+KS+LP
Sbjct: 39 TSLAENGNGFAAAVSVLNSSEGSTGLGDVSNRVEPKKVPETYRKFEAMVLQNFVKSMLPS 98
Query: 71 ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E+ G G +G+ W+ ++AE I++V+ I +
Sbjct: 99 ESESVFGKGTSGEVWKGMMAEQIANVLADGGGIGI 133
>gi|116250510|ref|YP_766348.1| hypothetical protein RL0738 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255158|emb|CAK06232.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 187
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 20 AKISQDDSSFQSFLQLKDVQ---------EACDKSKSVPEMTQKLQGIMFQYFIKSILPE 70
++++ F + + + D + K++ VPE +K + ++ Q F+KS+LP
Sbjct: 39 TSLAENGKGFSNTVDVLDHVGQKSGLANIQNRTKTEEVPESYRKFEAMVLQNFVKSMLPN 98
Query: 71 ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E+ G G GD W+ ++AE + +V+ K I +
Sbjct: 99 ESEDVYGKGATGDIWKGMMAEQLGNVMAKGDGIGI 133
>gi|86356340|ref|YP_468232.1| hypothetical protein RHE_CH00689 [Rhizobium etli CFN 42]
gi|86280442|gb|ABC89505.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 187
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K I
Sbjct: 72 KTEEVPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWKGMMAEQLGNTMAKGDGI 131
Query: 104 TL 105
+
Sbjct: 132 GI 133
>gi|190890392|ref|YP_001976934.1| hypothetical protein RHECIAT_CH0000767 [Rhizobium etli CIAT 652]
gi|218516756|ref|ZP_03513596.1| hypothetical protein Retl8_25663 [Rhizobium etli 8C-3]
gi|190695671|gb|ACE89756.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 187
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 20 AKISQDDSSFQSFLQLKDVQ---------EACDKSKSVPEMTQKLQGIMFQYFIKSILPE 70
++++ F + + + D + K++ VPE +K + ++ Q F+KS+LP
Sbjct: 39 TSLAENGKGFSNTVDVLDHVGQKSGLSNIQNRTKAEEVPESYRKFEAMVLQNFVKSMLPS 98
Query: 71 ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E+ G G GD W+ ++AE + + + K I +
Sbjct: 99 ESEDVYGKGATGDIWKGMMAEQLGNTMAKGDGIGI 133
>gi|218463241|ref|ZP_03503332.1| hypothetical protein RetlK5_29124 [Rhizobium etli Kim 5]
Length = 168
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K I
Sbjct: 53 KAEEVPESYRKFEAMVLQNFVKSMLPSESEDVYGKGATGDIWKGMMAEQLGNTMAKGDGI 112
Query: 104 TL 105
+
Sbjct: 113 GI 114
>gi|209547956|ref|YP_002279873.1| hypothetical protein Rleg2_0348 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533712|gb|ACI53647.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 187
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
K++ VPE +K + ++ Q F+KS+LP E+ G G GD W+ ++AE + + + K I
Sbjct: 72 KAEEVPESYRKFEAMVLQNFVKSMLPNESEDVYGKGATGDIWKGMMAEQLGNTMAKGDGI 131
Query: 104 TL 105
+
Sbjct: 132 GI 133
>gi|241203134|ref|YP_002974230.1| hypothetical protein Rleg_0380 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857024|gb|ACS54691.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 187
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 20 AKISQDDSSFQSFLQLKDVQ---------EACDKSKSVPEMTQKLQGIMFQYFIKSILPE 70
++++ F + + + D + K++ PE +K + ++ Q F+KS+LP
Sbjct: 39 TSLAENGKGFSNTVDVLDQVGHKSGLNNIQNRTKAEEAPESYRKFEAMVLQNFVKSMLPS 98
Query: 71 ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E+ G G GD W+ ++AE + +V+ K I +
Sbjct: 99 ESEDVYGKGATGDIWKGMMAEQLGNVMAKGDGIGI 133
>gi|218509487|ref|ZP_03507365.1| hypothetical protein RetlB5_19244 [Rhizobium etli Brasil 5]
Length = 168
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 20 AKISQDDSSFQSFLQLKDVQ---------EACDKSKSVPEMTQKLQGIMFQYFIKSILPE 70
++++ F + + + D + K++ VPE +K + ++ Q F+KS+LP
Sbjct: 20 TSLAENGKGFSNTVDVLDHVGQKSGLSNIQNRTKAEEVPESYRKFEAMVLQNFVKSMLPS 79
Query: 71 ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E+ G G GD W+ ++AE + + + K I +
Sbjct: 80 ESEDVYGKGATGDIWKGMMAEQLGNTMAKGDGIGI 114
>gi|163758042|ref|ZP_02165130.1| hypothetical protein HPDFL43_00415 [Hoeflea phototrophica DFL-43]
gi|162284331|gb|EDQ34614.1| hypothetical protein HPDFL43_00415 [Hoeflea phototrophica DFL-43]
Length = 201
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 13 QSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVP-----------------EMTQKL 55
++ A+ + +F+ L A S VP E Q+
Sbjct: 30 EAASVRKAENASRTPAFERQLLASTGMSALPASNEVPASIADNAPEARVVDKTAETYQRF 89
Query: 56 QGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ ++ Q FI S+LP+++ + G G G+ W+ ++AE + V+ K I +
Sbjct: 90 EAMILQKFIGSMLPQDSEELYGKGTAGEIWKGMMAEQLGMVLAKGGGIGI 139
>gi|222084895|ref|YP_002543424.1| hypothetical protein Arad_0923 [Agrobacterium radiobacter K84]
gi|221722343|gb|ACM25499.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 198
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
VP++ +K + ++ Q F+K++LP + G G G+ W+ ++AE + + + K + +
Sbjct: 74 TKVPQVYRKFEAMVLQNFVKNMLPN-SETLYGKGSAGEIWKGMMAEQMGNTLAKNGGVGI 132
>gi|222147599|ref|YP_002548556.1| hypothetical protein Avi_0776 [Agrobacterium vitis S4]
gi|221734587|gb|ACM35550.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 210
Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 13 QSMGGNLAKISQDDSS--FQSFLQLKD---------VQEACD--KSKSVPEMTQKLQGIM 59
QS ++ S ++ S F+ + + A + K+ +P+ ++ +GI+
Sbjct: 41 QSARASVQAASLNEKSAGFEVAMNTLNDGASTKAGLANRATNTIKASDIPKPYRQYEGIV 100
Query: 60 FQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
Q FI ++LP+++ G G G+ W+ ++AE I + I ++ + +
Sbjct: 101 LQNFISNMLPKDSEAVFGKGNAGEIWKSMMAEQIGNTISERGGVGI 146
>gi|159184375|ref|NP_353610.2| hypothetical protein Atu0584 [Agrobacterium tumefaciens str. C58]
gi|159139688|gb|AAK86395.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 175
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+PE +K + + Q F+ ++LP+++ + G G G+ W+ ++AE +D I + + +
Sbjct: 64 TEIPETYRKYEASVLQTFVANMLPKDSEEVYGKGNAGEIWKSMMAEQFADTISRNGGVGI 123
>gi|325291972|ref|YP_004277836.1| hypothetical protein AGROH133_04007 [Agrobacterium sp. H13-3]
gi|325059825|gb|ADY63516.1| hypothetical protein AGROH133_04007 [Agrobacterium sp. H13-3]
Length = 185
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
VPE +K + + Q F+ ++LP+++ + G G G+ W+ ++AE +D I + + +
Sbjct: 74 TEVPETYRKYEASVLQTFVANMLPKDSEEVYGKGNAGEIWKSMMAEQFADTISRNGGVGI 133
>gi|319781645|ref|YP_004141121.1| flagellar protein FlgJ-like protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167533|gb|ADV11071.1| Flagellar protein FlgJ-like protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 180
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 52 TQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + ++ Q FI+++LP++T G G GD W+ LAE ++DV+ ++ I +
Sbjct: 62 FKKFEAMVLQTFIQNMLPKDTEGVYGKGLAGDMWKSQLAERVADVMAERGGIGI 115
>gi|27381960|ref|NP_773489.1| hypothetical protein bll6849 [Bradyrhizobium japonicum USDA 110]
gi|27355130|dbj|BAC52114.1| bll6849 [Bradyrhizobium japonicum USDA 110]
Length = 170
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E+ +K + + Q F++++LP+E+ + G G G W+ +LAE + + + K + I +
Sbjct: 96 EVYRKFEAFILQTFVETMLPKESEELFGKGTAGSVWKSMLAEQLGNQLAKGKGIGI 151
>gi|13472616|ref|NP_104183.1| hypothetical protein mlr2964 [Mesorhizobium loti MAFF303099]
gi|14023362|dbj|BAB49969.1| mlr2964 [Mesorhizobium loti MAFF303099]
Length = 209
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 52 TQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + ++ Q FI+++LP++T G G GD W+ LAE ++DV+ ++ I +
Sbjct: 91 FKKFEAMVLQTFIQNMLPKDTEGVYGTGLAGDMWKSQLAERVADVMAERGGIGI 144
>gi|218681683|ref|ZP_03529484.1| hypothetical protein RetlC8_23443 [Rhizobium etli CIAT 894]
Length = 116
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 20 AKISQDDSSFQSFLQL---------KDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPE 70
++++ F + + + + + K++ VPE +K + ++ Q F+KS+LP
Sbjct: 39 TSLAENGKGFSNTVDILDHIGQKSGVNNIQNRTKAEEVPESYRKFEAMVLQNFVKSMLPS 98
Query: 71 ETVKSLGGGFNGDFWQEI 88
E+ G G GD W+ +
Sbjct: 99 ESEDVYGKGATGDIWKGM 116
>gi|115523203|ref|YP_780114.1| hypothetical protein RPE_1182 [Rhodopseudomonas palustris BisA53]
gi|115517150|gb|ABJ05134.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length = 162
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 52 TQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + + Q F++S+LP++ + G G +G W+ +LAE IS+ + K I +
Sbjct: 91 YRKFEAFILQMFVESMLPKDATEVFGKGTSGTVWRSMLAEQISNEMAKGNGIGI 144
>gi|148557980|ref|YP_001257994.1| hypothetical protein BOV_A1034 [Brucella ovis ATCC 25840]
gi|148369265|gb|ABQ62137.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 210
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G ++QD+ SF L + +S + P +K + M Q F++S+ +T
Sbjct: 55 GSAATGLTQDNFGSFSENLAAEVSVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 113
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 114 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 144
>gi|260466578|ref|ZP_05812766.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259029584|gb|EEW30872.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 180
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 52 TQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + ++ Q FI+++LP++T G G GD W+ LAE ++DV+ + I +
Sbjct: 62 FKKFEAMVLQTFIQNMLPKDTEGVYGTGLAGDMWKSQLAERVADVMADRGGIGI 115
>gi|225628419|ref|ZP_03786453.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|237817493|ref|ZP_04596484.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|225616265|gb|EEH13313.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|237787328|gb|EEP61545.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
Length = 233
Score = 78.6 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G ++QD+ SF L + +S + P +K + M Q F++S+ +T
Sbjct: 78 GSAATGLTQDNFGSFSENLAAEVSVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 136
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 137 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 167
>gi|163845448|ref|YP_001623103.1| hypothetical protein BSUIS_B1356 [Brucella suis ATCC 23445]
gi|163676171|gb|ABY40281.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 196
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G ++QD+ SF L + +S + P +K + M Q F++S+ +T
Sbjct: 41 GSAATGLTQDNFGSFSENLAAEVSVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 99
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 100 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 130
>gi|23500844|ref|NP_700284.1| hypothetical protein BRA1129 [Brucella suis 1330]
gi|62317948|ref|YP_223801.1| hypothetical protein BruAb2_1066 [Brucella abortus bv. 1 str.
9-941]
gi|83269925|ref|YP_419216.1| flagellar protein FlgJ [Brucella melitensis biovar Abortus 2308]
gi|161621172|ref|YP_001595058.1| hypothetical protein BCAN_B1158 [Brucella canis ATCC 23365]
gi|189023199|ref|YP_001932940.1| Flagellar protein FlgJ [Brucella abortus S19]
gi|225686876|ref|YP_002734848.1| hypothetical protein BMEA_B1123 [Brucella melitensis ATCC 23457]
gi|254691622|ref|ZP_05154876.1| hypothetical protein Babob68_16087 [Brucella abortus bv. 6 str.
870]
gi|254695082|ref|ZP_05156910.1| hypothetical protein Babob3T_10598 [Brucella abortus bv. 3 str.
Tulya]
gi|254698179|ref|ZP_05160007.1| hypothetical protein Babob28_10830 [Brucella abortus bv. 2 str.
86/8/59]
gi|254699254|ref|ZP_05161082.1| hypothetical protein Bsuib55_00092 [Brucella suis bv. 5 str. 513]
gi|254702373|ref|ZP_05164201.1| hypothetical protein Bsuib36_00075 [Brucella suis bv. 3 str. 686]
gi|254706506|ref|ZP_05168334.1| hypothetical protein BpinM_05852 [Brucella pinnipedialis
M163/99/10]
gi|254711209|ref|ZP_05173020.1| hypothetical protein BpinB_13300 [Brucella pinnipedialis B2/94]
gi|254711809|ref|ZP_05173620.1| hypothetical protein BcetM6_00065 [Brucella ceti M644/93/1]
gi|254714877|ref|ZP_05176688.1| hypothetical protein BcetM_00065 [Brucella ceti M13/05/1]
gi|254731624|ref|ZP_05190202.1| hypothetical protein Babob42_10640 [Brucella abortus bv. 4 str.
292]
gi|256015888|ref|YP_003105897.1| hypothetical protein BMI_II1135 [Brucella microti CCM 4915]
gi|256030162|ref|ZP_05443776.1| hypothetical protein BpinM2_05860 [Brucella pinnipedialis
M292/94/1]
gi|256042855|ref|ZP_05445801.1| hypothetical protein Bmelb1R_00125 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059814|ref|ZP_05450009.1| hypothetical protein Bneo5_05655 [Brucella neotomae 5K33]
gi|256112186|ref|ZP_05453107.1| hypothetical protein Bmelb3E_05792 [Brucella melitensis bv. 3 str.
Ether]
gi|256158341|ref|ZP_05456245.1| hypothetical protein BcetM4_05792 [Brucella ceti M490/95/1]
gi|256252725|ref|ZP_05458261.1| hypothetical protein BcetB_00090 [Brucella ceti B1/94]
gi|256256809|ref|ZP_05462345.1| hypothetical protein Babob9C_05515 [Brucella abortus bv. 9 str.
C68]
gi|256261989|ref|ZP_05464521.1| flagellar protein FlgJ [Brucella melitensis bv. 2 str. 63/9]
gi|260166786|ref|ZP_05753597.1| hypothetical protein BruF5_00075 [Brucella sp. F5/99]
gi|260544132|ref|ZP_05819953.1| flagellar protein FlgJ [Brucella abortus NCTC 8038]
gi|260564093|ref|ZP_05834578.1| flagellar protein FlgJ [Brucella melitensis bv. 1 str. 16M]
gi|260568724|ref|ZP_05839193.1| flagellar protein FlgJ [Brucella suis bv. 4 str. 40]
gi|260757252|ref|ZP_05869600.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260759383|ref|ZP_05871731.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260762626|ref|ZP_05874958.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883056|ref|ZP_05894670.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261215434|ref|ZP_05929715.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|261216566|ref|ZP_05930847.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261219803|ref|ZP_05934084.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313961|ref|ZP_05953158.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318800|ref|ZP_05957997.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261319437|ref|ZP_05958634.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261323794|ref|ZP_05962991.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261749692|ref|ZP_05993401.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261752936|ref|ZP_05996645.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756163|ref|ZP_05999872.1| flagellar protein FlgJ [Brucella sp. F5/99]
gi|265987193|ref|ZP_06099750.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265989291|ref|ZP_06101848.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993613|ref|ZP_06106170.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996856|ref|ZP_06109413.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294852957|ref|ZP_06793629.1| hypothetical protein BAZG_01894 [Brucella sp. NVSL 07-0026]
gi|297250160|ref|ZP_06933861.1| hypothetical protein BAYG_02948 [Brucella abortus bv. 5 str. B3196]
gi|23464508|gb|AAN34289.1| conserved hypothetical protein [Brucella suis 1330]
gi|62198141|gb|AAX76440.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82940199|emb|CAJ13252.1| Flagellar protein FlgJ [Brucella melitensis biovar Abortus 2308]
gi|161337983|gb|ABX64287.1| Hypothetical protein BCAN_B1158 [Brucella canis ATCC 23365]
gi|189021773|gb|ACD74494.1| Flagellar protein FlgJ [Brucella abortus S19]
gi|225642981|gb|ACO02894.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|255998548|gb|ACU50235.1| hypothetical protein BMI_II1135 [Brucella microti CCM 4915]
gi|260097403|gb|EEW81277.1| flagellar protein FlgJ [Brucella abortus NCTC 8038]
gi|260151736|gb|EEW86829.1| flagellar protein FlgJ [Brucella melitensis bv. 1 str. 16M]
gi|260155389|gb|EEW90470.1| flagellar protein FlgJ [Brucella suis bv. 4 str. 40]
gi|260669701|gb|EEX56641.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673047|gb|EEX59868.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677360|gb|EEX64181.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260872584|gb|EEX79653.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917041|gb|EEX83902.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260918387|gb|EEX85040.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260921655|gb|EEX88223.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292127|gb|EEX95623.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261298023|gb|EEY01520.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299774|gb|EEY03271.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302987|gb|EEY06484.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261736147|gb|EEY24143.1| flagellar protein FlgJ [Brucella sp. F5/99]
gi|261739445|gb|EEY27371.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261742689|gb|EEY30615.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262551153|gb|EEZ07314.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262764483|gb|EEZ10515.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|262999960|gb|EEZ12650.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263091473|gb|EEZ16009.1| flagellar protein FlgJ [Brucella melitensis bv. 2 str. 63/9]
gi|264659390|gb|EEZ29651.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|294818612|gb|EFG35612.1| hypothetical protein BAZG_01894 [Brucella sp. NVSL 07-0026]
gi|297174029|gb|EFH33393.1| hypothetical protein BAYG_02948 [Brucella abortus bv. 5 str. B3196]
gi|326411292|gb|ADZ68356.1| Flagellar protein FlgJ [Brucella melitensis M28]
gi|326554581|gb|ADZ89220.1| Flagellar protein FlgJ [Brucella melitensis M5-90]
Length = 196
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G ++QD+ SF L + +S + P +K + M Q F++S+ +T
Sbjct: 41 GSAATGLTQDNFGSFSENLAAEVSVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 99
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 100 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 130
>gi|17988514|ref|NP_541147.1| flagellar protein FLGJ [Brucella melitensis bv. 1 str. 16M]
gi|17984307|gb|AAL53411.1| flagellar protein flgj [Brucella melitensis bv. 1 str. 16M]
Length = 158
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G ++QD+ SF L + +S + P +K + M Q F++S+ +T
Sbjct: 3 GSAATGLTQDNFGSFSENLAAEVSVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 61
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 62 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 92
>gi|306845409|ref|ZP_07477983.1| flagellar protein FLGJ [Brucella sp. BO1]
gi|306274152|gb|EFM55968.1| flagellar protein FLGJ [Brucella sp. BO1]
Length = 196
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G +++D+ SF L +S + P +K + M Q F++S+ +T
Sbjct: 41 GSAATGLARDNFGSFSENLAAGVSVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 99
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 100 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 130
>gi|254720782|ref|ZP_05182593.1| hypothetical protein Bru83_15037 [Brucella sp. 83/13]
gi|265985841|ref|ZP_06098576.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306840127|ref|ZP_07472912.1| flagellar protein FLGJ [Brucella sp. NF 2653]
gi|264664433|gb|EEZ34694.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306404772|gb|EFM61066.1| flagellar protein FLGJ [Brucella sp. NF 2653]
Length = 196
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G +++D+ SF L + +S + P +K + M Q F++S+ +T
Sbjct: 41 GSAATGLTRDNFGSFSENLAAEVGVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 99
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 100 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 130
>gi|90422634|ref|YP_531004.1| hypothetical protein RPC_1121 [Rhodopseudomonas palustris BisB18]
gi|90104648|gb|ABD86685.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 160
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 52 TQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + + Q F++S+LP++ + G G G W+ +LAE I + + K I +
Sbjct: 90 YRKFEAFILQMFVESMLPKDANEVFGKGTAGTIWRSMLAEQIGNEMSKGNGIGI 143
>gi|306841285|ref|ZP_07473996.1| flagellar protein FLGJ [Brucella sp. BO2]
gi|306288687|gb|EFM60018.1| flagellar protein FLGJ [Brucella sp. BO2]
Length = 196
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 16 GGNLAKISQDD-SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
G +++D+ SF L + +S + P +K + M Q F++S+ +T
Sbjct: 41 GSAATGLTRDNFGSFSENLAAEVGVRPDAQSAASP-AYRKFEAFMLQSFVQSMFTSDTTA 99
Query: 75 SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G++W+ ++AE +++ + + +
Sbjct: 100 TFGKGIAGEYWKSMMAEAMANKMADGGGVGI 130
>gi|328545478|ref|YP_004305587.1| hypothetical protein SL003B_3862 [polymorphum gilvum SL003B-26A1]
gi|326415219|gb|ADZ72282.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1]
Length = 149
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 39/96 (40%)
Query: 10 SHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILP 69
S S+++G + + + + QK + ++ Q F++S+LP
Sbjct: 42 SFSETLGQASSDAVPVHLRSSAASARVAMHNETTLAGRAASPVQKFEALVLQQFVESMLP 101
Query: 70 EETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
++ G G G W+ +LAE I I + I +
Sbjct: 102 DDAESVFGSGTAGGIWKSMLAEQIGTQIAARGGIGI 137
>gi|239834417|ref|ZP_04682745.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
gi|239822480|gb|EEQ94049.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
Length = 207
Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 27 SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQ 86
+SF L ++ + P +K + M Q F++S+ +T + G G G++W+
Sbjct: 63 ASFSDSLAAGVSVRPDAQNAASP-AYRKFEAFMLQSFVQSMFTSDTTATFGKGIAGEYWK 121
Query: 87 EILAENISDVIVKQQRITL 105
++AE +++ + + +
Sbjct: 122 SMMAEAMANKMADGGGVGI 140
>gi|153011498|ref|YP_001372712.1| hypothetical protein Oant_4183 [Ochrobactrum anthropi ATCC 49188]
gi|151563386|gb|ABS16883.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 205
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 27 SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQ 86
+SF L ++ + P +K + M Q F++S+ +T + G G G++W+
Sbjct: 62 ASFSDSLAAGVSVRPDAQNAASP-AYRKFEAFMLQSFVQSMFTSDTTATFGKGIAGEYWK 120
Query: 87 EILAENISDVIVKQQRITL 105
++AE +++ + + +
Sbjct: 121 SMMAEAMANKMADGGGVGI 139
>gi|170748115|ref|YP_001754375.1| hypothetical protein Mrad2831_1697 [Methylobacterium radiotolerans
JCM 2831]
gi|170654637|gb|ACB23692.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 158
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 14 SMGGNLAKISQDDSSFQSFLQL--KDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
+ G S + L ++K P ++ + + Q F++S+LP+
Sbjct: 44 AAGSRTGVPIAPQPSADTVLTRFRTAATLPAPRAKGSPA--EQFEAFVLQSFVESMLPQG 101
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
G G G W+ +LAE + + K I +
Sbjct: 102 ASAVFGKGNAGSIWKSMLAEQLGAQLAKAGGIGI 135
>gi|170744554|ref|YP_001773209.1| hypothetical protein M446_6518 [Methylobacterium sp. 4-46]
gi|168198828|gb|ACA20775.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 153
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 44 KSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRI 103
+K ++ + + Q+F++++LP + G G G +W+ +LAE I I K +
Sbjct: 72 SAKKAAGPYRQFESFVLQHFVETMLPSKASSVYGKGMAGGYWKSMLAEQIGGQIAKAGGL 131
Query: 104 TL 105
+
Sbjct: 132 GI 133
>gi|118589956|ref|ZP_01547360.1| hypothetical protein SIAM614_14865 [Stappia aggregata IAM 12614]
gi|118437453|gb|EAV44090.1| hypothetical protein SIAM614_14865 [Stappia aggregata IAM 12614]
Length = 140
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 31/53 (58%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+K + ++ F++++LP+++ G G G+ W+ +LAE +++ + + +
Sbjct: 74 EKFEAMILGQFVETMLPDDSEAVFGSGTAGEIWKSMLAEQVANQLAASGGVGI 126
>gi|319406960|emb|CBI80597.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 191
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 10 SHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILP 69
S + LA QDD +Q ++ +SK E+ + + + Q F++S+
Sbjct: 47 SFADLAQTTLASEVQDDLVSDGLVQQVHIRPQSVQSKEA-EVFRNFEAFVLQTFVESMFA 105
Query: 70 EETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G W+ ++AE ++ I +
Sbjct: 106 TDIQSIFGKGQAGQIWKSMMAEQLAKEFAVSGGIGI 141
>gi|23009328|ref|ZP_00050419.1| hypothetical protein Magn03004243 [Magnetospirillum magnetotacticum
MS-1]
Length = 144
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
K + +K +G + Q F++++LP + G G G W+ +LAE + I K I +
Sbjct: 61 KGSADPYRKFEGQVIQQFVEAMLP-KAETVFGKGNAGGIWKSMLAEQLGQQIAKTGGIGI 119
>gi|218528737|ref|YP_002419553.1| hypothetical protein Mchl_0704 [Methylobacterium chloromethanicum
CM4]
gi|218521040|gb|ACK81625.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
Length = 160
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 38 VQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVI 97
V + + +K +G + Q F++++LP + G G G W+ +LAE + I
Sbjct: 65 VLKNETARTGSADPYRKFEGQVIQQFVEAMLP-KAETVFGKGNAGGIWKSMLAEQLGQQI 123
Query: 98 VKQQRITL 105
+ I +
Sbjct: 124 AQTGGIGI 131
>gi|254505050|ref|ZP_05117201.1| hypothetical protein SADFL11_5090 [Labrenzia alexandrii DFL-11]
gi|222441121|gb|EEE47800.1| hypothetical protein SADFL11_5090 [Labrenzia alexandrii DFL-11]
Length = 143
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 23 SQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNG 82
+ +SF F A KS + +K + ++ F++++LP++ G G G
Sbjct: 52 APSGTSFDMFRSGSADAGASQKSPA-----EKFEAMILTQFVETMLPKDAEMVFGKGTTG 106
Query: 83 DFWQEILAENISDVIVKQQRITL 105
+ W+ +LAE ++ + I +
Sbjct: 107 EIWKSMLAEQVAGQLAASGGIGV 129
>gi|254473405|ref|ZP_05086802.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957521|gb|EEA92724.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 160
Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 4 LPISNISHSQSMGGNLAKISQDDSSF--QSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQ 61
LP+S S + S ++ + + QL + K ++ +KL+ + Q
Sbjct: 39 LPVSEPSWASSSFSRFMAEAESAKAKGQEGVEQLNSMANRYSKKLDNADLGEKLESAILQ 98
Query: 62 YFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
F+KS+LP+E GGG G W+ ++AE +++ + K I L
Sbjct: 99 TFVKSMLPKEMETVYGGGTAGTMWKGLMAEQLANQLAKSGSIGL 142
>gi|182680486|ref|YP_001834632.1| hypothetical protein Bind_3587 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182636369|gb|ACB97143.1| hypothetical protein Bind_3587 [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 169
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 5 PISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVP--------------- 49
PIS I + +G S +D F L V + S S+P
Sbjct: 19 PISPIMARERLGSTDGSSSTNDVHFSHILD--GVGSSEPPSHSLPLFLPKPRLETPSPNT 76
Query: 50 --EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
++ + L+ ++ + F++++LP+ T G G G+ W+ ++A+ +S I K+ + +
Sbjct: 77 RTKVFKDLETVLLRNFVEAMLPKNTEDVFGHGTAGNIWKSMMADQLSKEIGKRLDLGI 134
>gi|163850133|ref|YP_001638176.1| hypothetical protein Mext_0693 [Methylobacterium extorquens PA1]
gi|240137267|ref|YP_002961736.1| hypothetical protein MexAM1_META1p0518 [Methylobacterium extorquens
AM1]
gi|254559278|ref|YP_003066373.1| hypothetical protein METDI0674 [Methylobacterium extorquens DM4]
gi|163661738|gb|ABY29105.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
gi|240007233|gb|ACS38459.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
gi|254266556|emb|CAX22320.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 156
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 40 EACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
+ + +K +G + Q F++++LP + G G G W+ +LAE + I +
Sbjct: 67 KNETARTGSADPYRKFEGQVIQQFVEAMLP-KAETVFGKGNAGGIWKSMLAEQLGQQIAQ 125
Query: 100 QQRITL 105
I +
Sbjct: 126 TGGIGI 131
>gi|188579935|ref|YP_001923380.1| hypothetical protein Mpop_0667 [Methylobacterium populi BJ001]
gi|179343433|gb|ACB78845.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 156
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ +K +G + Q F++++LP + G G G W+ +L+E I I K I +
Sbjct: 77 DPYRKFEGQVIQQFVEAMLP-KAETVFGKGNAGGIWKSMLSEQIGQQIAKTGGIGI 131
>gi|114705548|ref|ZP_01438451.1| hypothetical protein FP2506_13819 [Fulvimarina pelagi HTCC2506]
gi|114538394|gb|EAU41515.1| hypothetical protein FP2506_13819 [Fulvimarina pelagi HTCC2506]
Length = 118
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
Q+ + + F++S+LP E G G G+ W+ ++AE I + I + I +
Sbjct: 26 QEFESFALRSFVESMLPSEASNFFGSGTAGNIWRSMMAEQIGEQITRAGGIGI 78
>gi|319405384|emb|CBI79003.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 172
Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 10 SHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILP 69
S + N A QDD +Q ++ KSK + + + + Q F++S+
Sbjct: 47 SFADLAHVNSALAVQDDLVSDGIVQQTHIRPQSIKSKEAA-VFRDFEAFVLQTFVESMFA 105
Query: 70 EETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G G G W+ ++AE ++ I +
Sbjct: 106 SDIQSIFGKGQAGRIWKSMMAEQLAKEFAVSGGIGI 141
>gi|319898619|ref|YP_004158712.1| hypothetical protein BARCL_0447 [Bartonella clarridgeiae 73]
gi|319402583|emb|CBI76128.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 172
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 17 GNLAKISQDDSSF-QSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKS 75
I ++ +SF +Q V+ +SK + + + + Q F++++ +
Sbjct: 36 ARTQAIEREGNSFADRIVQQTHVKPQSVESKETA-VFRDFEAFVLQTFVENMFATDIQSI 94
Query: 76 LGGGFNGDFWQEILAENISDVIVKQQRITL 105
G G G W+ ++AE ++ I +
Sbjct: 95 FGKGQAGQIWKSMMAEQLAKEFAISGGIGI 124
>gi|319403943|emb|CBI77531.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 196
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 17 GNLAKISQDDSSFQSFLQLKDVQEAC---------------DKSKSVPEM--TQKLQGIM 59
+ +++SSF Q E +S E + + +
Sbjct: 36 ARVQTTEREESSFADLAQTTSASEVRDNLVSDGLIQQVHIRPQSVQSKEAAVFRNFEAFV 95
Query: 60 FQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
Q F++S+ + G G G W+ ++AE ++ I +
Sbjct: 96 LQTFVESMFATDIQSIFGKGQAGQIWKSMMAEQLAKEFAVSGGIGI 141
>gi|158422281|ref|YP_001523573.1| hypothetical protein AZC_0657 [Azorhizobium caulinodans ORS 571]
gi|158329170|dbj|BAF86655.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 201
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 6 ISNISHSQSMGGNLAKIS--QDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYF 63
+S S S + NL +S ++ +L +K + ++ F
Sbjct: 56 LSFASTSTTSLHNLTNLSKRPGAEPGEAASELMAKAGNDP--------LRKFEAMVLSTF 107
Query: 64 IKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
++S+LP ++ G G G+ W+ +LA+ + D + + I +
Sbjct: 108 VESMLP-KSTAVYGAGNAGNVWRSMLAQKMGDQVAEAGGIGI 148
>gi|319409203|emb|CBI82847.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 165
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 6 ISNISHSQSM---GGNLAKISQDDSSFQSFLQLKDVQEACDKSKSV----PEMTQKLQGI 58
+ N + +Q++ N A++ D + + ++Q+ K SV E + +
Sbjct: 32 LRNTARTQTVAHQENNFAQLVHADYTNSHTVTQHELQQVHIKPHSVENKNTEAFKNFEAF 91
Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ Q F++++ E G G G W+ ++AE ++ I +
Sbjct: 92 ILQTFVENMFTTEMQSIFGKGQAGQIWKFMMAEQLAKEFATSGGIGI 138
>gi|296445186|ref|ZP_06887146.1| Flagellar protein FlgJ-like protein [Methylosinus trichosporium
OB3b]
gi|296257360|gb|EFH04427.1| Flagellar protein FlgJ-like protein [Methylosinus trichosporium
OB3b]
Length = 162
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 25 DDSSFQSFLQLK-DVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD 83
+ L+ A K S + + +G + Q +++ILP+ G G G
Sbjct: 56 PTQTAAPVLRTGGSASGAMQKIASAADAAESFEGFVIQSCLETILPKGEDGLFGHGAAGS 115
Query: 84 FWQEILAENISDVIVKQQRITL 105
W+ ++AE I I K +
Sbjct: 116 AWRSMMAEQIGRQIAKAGGFGM 137
>gi|121602730|ref|YP_989416.1| hypothetical protein BARBAKC583_1157 [Bartonella bacilliformis
KC583]
gi|120614907|gb|ABM45508.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
Length = 193
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E+ + + M Q I+++ + G G G W+ ++ E ++ I +
Sbjct: 83 EVFKDFEAFMLQTLIENMFTTDLPSVFGKGQAGKIWKFMMVEQLAKEFAMSGGIGI 138
>gi|258592556|emb|CBE68865.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
Length = 116
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 37 DVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDV 96
Q + + + E+ Q + I+ +K P E GGG + D ++++ + I+
Sbjct: 13 AQQRTQPEEQKLKEVAQGFEAILIASLLKEARPSEQAGLFGGGLSQDLYRQLFTDEIAKA 72
Query: 97 IVKQQRITL 105
I + I +
Sbjct: 73 IARSGGIGV 81
>gi|300024564|ref|YP_003757175.1| flagellar protein FlgJ-like protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526385|gb|ADJ24854.1| Flagellar protein FlgJ-like protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 118
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 40 EACDKS-KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
+A + K E+ Q+ + + + I + +P+++ G G +G W+ ++ + ++ +
Sbjct: 37 QADPAAMKKAKEVAQQFEAVYLRQMIDASMPKDSEALFGEGTSGTMWRSMMTDTLATSLS 96
Query: 99 KQQRITL 105
K + +
Sbjct: 97 KTGTLGI 103
>gi|323136991|ref|ZP_08072071.1| Flagellar protein FlgJ-like [Methylocystis sp. ATCC 49242]
gi|322397752|gb|EFY00274.1| Flagellar protein FlgJ-like [Methylocystis sp. ATCC 49242]
Length = 163
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 38 VQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVI 97
QK + + Q +++ +LP+ + G G G+ W+ ++AE + +
Sbjct: 71 ATRPQPAKTPAAVAAQKFEAYILQSWLELLLPKVEGGTFGSGGAGNIWRSMMAEQLGTQL 130
Query: 98 VKQQRITL 105
K I +
Sbjct: 131 AKSGVIGI 138
>gi|217976250|ref|YP_002360397.1| hypothetical protein Msil_0052 [Methylocella silvestris BL2]
gi|217501626|gb|ACK49035.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 163
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 31/135 (22%)
Query: 1 MQVLPISNIS----------HSQSMGGNLAKISQDDSS---FQSFLQLKDVQEA------ 41
M + P+S+I + G L+ + +S F F+ +
Sbjct: 1 MSIKPVSDIVLDVARAANPVQVAAAAGRLSSLRPSLASSGEFSQFIASGAPEATGGGGFA 60
Query: 42 -----------CDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILA 90
+S + + L+ Q ++++LP + G G GD W+ +LA
Sbjct: 61 VWSDPPSFSAPAPQSDPGAKAYKALEEFFLQGVVETLLP-KGEGLFGAGTAGDVWRSMLA 119
Query: 91 ENISDVIVKQQRITL 105
E ++ I K + L
Sbjct: 120 EQLAKQIGKSIDLGL 134
>gi|83858814|ref|ZP_00952336.1| chemotactic signal-response protein CheL [Oceanicaulis alexandrii
HTCC2633]
gi|83853637|gb|EAP91489.1| chemotactic signal-response protein CheL [Oceanicaulis alexandrii
HTCC2633]
Length = 108
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 35 LKDVQEACDKSKSVPEMTQK----LQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILA 90
+ PE +K + + ++ +L E T + GGG ++ +L
Sbjct: 17 RGTASTSRPNGAQSPEQMRKTAEDFEAVFLAQMMEHMLGETTESTFGGGPGESAFKSMLN 76
Query: 91 ENISDVIVKQQRITL 105
E + V+ K I L
Sbjct: 77 EEYAKVMAKAGGIGL 91
>gi|86750904|ref|YP_487400.1| chemotactic signal-response protein CheL [Rhodopseudomonas
palustris HaA2]
gi|86573932|gb|ABD08489.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 113
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 15 MGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVK 74
L + D + L K +A K++ E ++ + + F+ S+ + T
Sbjct: 9 ARTALTHDGRPDIDLNAAL-TKVSPKAQTKAR---ESAEQFEAM----FLNSMFSQMTSG 60
Query: 75 SLGGGFNGD-----FWQEILAENISDVIVKQQRITL 105
G G GD W+ +L E S I K + +
Sbjct: 61 LKGDGPFGDTVGTGVWRSMLTEQYSQTIAKAGGVGI 96
>gi|312115270|ref|YP_004012866.1| hypothetical protein Rvan_2552 [Rhodomicrobium vannielii ATCC
17100]
gi|311220399|gb|ADP71767.1| hypothetical protein Rvan_2552 [Rhodomicrobium vannielii ATCC
17100]
Length = 155
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 11 HSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPE 70
Q+ + + ++F + + + + +LP
Sbjct: 50 QLQAARRMAGQGAASLAAFHPATSGAAATGKSP--------YELFEISVLNTLFEIMLP- 100
Query: 71 ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL--DLPEISK 112
++ + G GF+G+ W+ ++++++++ + + + L E SK
Sbjct: 101 KSATAFGAGFSGNVWKSMMSQSLAEACGRAGALGIAHRLEERSK 144
>gi|294339838|emb|CAZ88201.1| putative Muramidase FlgJ [Thiomonas sp. 3As]
Length = 367
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 23 SQDDSSFQSFLQLKDVQEACDKS-KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFN 81
+ + SFQ QLK A +S +++ + Q+ + ++ Q + ++ L G
Sbjct: 19 ASNSLSFQGLNQLKAAANADPRSPQAIKAVAQQFEALLMQQMLSAMNATSLGPDLLGDTA 78
Query: 82 GDFWQEILAENISDVIVKQQRITL 105
G ++ + + ++ + + Q + L
Sbjct: 79 GPMFKSMFTQQLATTLSQGQGMGL 102
>gi|296135668|ref|YP_003642910.1| flagellar rod assembly protein/muramidase FlgJ [Thiomonas
intermedia K12]
gi|295795790|gb|ADG30580.1| flagellar rod assembly protein/muramidase FlgJ [Thiomonas
intermedia K12]
Length = 362
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 23 SQDDSSFQSFLQLKDVQEACDKS-KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFN 81
+ + SFQ QLK A +S +++ + Q+ + ++ Q + ++ L G
Sbjct: 19 ASNSLSFQGLNQLKAAANADPRSPQAIKAVAQQFEALLMQQMLSAMNATSLGPDLLGDTA 78
Query: 82 GDFWQEILAENISDVIVKQQRITL 105
G ++ + + ++ + + Q + L
Sbjct: 79 GPMFKSMFTQQLATTLSQGQGMGL 102
>gi|83594182|ref|YP_427934.1| hypothetical protein Rru_A2850 [Rhodospirillum rubrum ATCC 11170]
gi|83577096|gb|ABC23647.1| hypothetical protein Rru_A2850 [Rhodospirillum rubrum ATCC 11170]
Length = 109
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 50 EMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E Q+ + ++ + ET GGG + W+ ++ + +I + + +
Sbjct: 39 ESAQEFESFFLGQMLQPMFSSIETAAPFGGGHAEEMWRSMMVDEYGKMIARNGGVGI 95
>gi|304392484|ref|ZP_07374424.1| putative chemotactic signal-response protein CheL [Ahrensia sp.
R2A130]
gi|303295114|gb|EFL89474.1| putative chemotactic signal-response protein CheL [Ahrensia sp.
R2A130]
Length = 107
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + + + F++++LP ++ GGG GD W+ L+ I+ + + + L
Sbjct: 37 KTAVEFEAVFLGTFVEAMLP-KSDSMYGGGMAGDMWRSQLSSGIAMQLAQSNLLGL 91
>gi|163794159|ref|ZP_02188132.1| hypothetical protein BAL199_02059 [alpha proteobacterium BAL199]
gi|159180773|gb|EDP65292.1| hypothetical protein BAL199_02059 [alpha proteobacterium BAL199]
Length = 114
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 21 KISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGG 79
+++ + Q + A V + +K + + + +T GGG
Sbjct: 13 SFARNQGATQRQRDTLNAAAATGDRSEVRKAAEKFESQFIAQMLGHMFKGVKTDGMFGGG 72
Query: 80 FNGDFWQEILAENISDVIVKQQRITL 105
W++ E +SDVI K+ I +
Sbjct: 73 QAESTWRDFYVEEVSDVIAKRGGIGV 98
>gi|91976154|ref|YP_568813.1| chemotactic signal-response protein CheL [Rhodopseudomonas
palustris BisB5]
gi|91682610|gb|ABE38912.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 114
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 19/110 (17%)
Query: 1 MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF 60
M ++P++ + S G D + L Q + + Q + +
Sbjct: 2 MSIVPVTYSHVAPSYNGR------PDIALTEAL----AQVSPKAQAKAHKSAQDFEAM-- 49
Query: 61 QYFIKSILPEETVKSLGGGFNGD-----FWQEILAENISDVIVKQQRITL 105
F+ S+ + T G G GD W+ +L + + + K + +
Sbjct: 50 --FLNSMFSQMTSGLKGDGPFGDTVGTGVWRSMLTDQYAQTVAKAGGVGI 97
>gi|292492368|ref|YP_003527807.1| flagellar rod assembly protein/muramidase FlgJ [Nitrosococcus
halophilus Nc4]
gi|291580963|gb|ADE15420.1| flagellar rod assembly protein/muramidase FlgJ [Nitrosococcus
halophilus Nc4]
Length = 305
Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 22 ISQDDSS----FQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLG 77
++ + F SF +L+ + PE +++ +FI+ +L S G
Sbjct: 1 MAPSTTPLYTHFDSFTELRQTARQAPQD---PETLRQVGAQFESFFIQIMLKNMREASQG 57
Query: 78 GGFNG----DFWQEILAENISDVIVKQQRITL 105
G F+Q + + IS + ++ + L
Sbjct: 58 EGLLDSQQVQFYQGLFDQQISLELARKGGLGL 89
>gi|163744342|ref|ZP_02151702.1| hypothetical protein OIHEL45_02125 [Oceanibulbus indolifex HEL-45]
gi|161381160|gb|EDQ05569.1| hypothetical protein OIHEL45_02125 [Oceanibulbus indolifex HEL-45]
Length = 100
Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
E ++ + + + +L + S GGG + W+ L+ I + I +Q +
Sbjct: 28 ESAKEFEAMFLGQMVDEMLSTVDIGSFGGGHAEETWRSFLSNAIGESIAEQNTTGI 83
>gi|83944170|ref|ZP_00956626.1| hypothetical protein EE36_02523 [Sulfitobacter sp. EE-36]
gi|83845037|gb|EAP82918.1| hypothetical protein EE36_02523 [Sulfitobacter sp. EE-36]
Length = 100
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 25/57 (43%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLD 106
+ ++ + + F+ ++ + GG D W+ ++E ++ +V+Q +
Sbjct: 22 QTGKEFEKVFLTQFVDEMMKTAGASAFGGEQQADMWRSFMSEAVAGQLVEQGGLGFS 78
>gi|83955130|ref|ZP_00963786.1| hypothetical protein NAS141_03456 [Sulfitobacter sp. NAS-14.1]
gi|83840459|gb|EAP79632.1| hypothetical protein NAS141_03456 [Sulfitobacter sp. NAS-14.1]
Length = 100
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 25/57 (43%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLD 106
+ ++ + + F+ ++ + GG D W+ ++E ++ +V+Q +
Sbjct: 22 QTGKEFEKVFLTQFVDEMMKTAGASAFGGEQQADMWRSFMSEAVAGQLVEQGGLGFS 78
>gi|118588721|ref|ZP_01546129.1| hypothetical protein SIAM614_18484 [Stappia aggregata IAM 12614]
gi|118438707|gb|EAV45340.1| hypothetical protein SIAM614_18484 [Stappia aggregata IAM 12614]
Length = 89
Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRIT 104
V E ++ + + ++++ E + G G D WQ +L + + I I
Sbjct: 13 TRVREAAEEFEAVFLNTMLQNMFTGLENGGTWGKGHGADAWQSLLVDEYARNIAASGGIG 72
Query: 105 L 105
L
Sbjct: 73 L 73
>gi|114765252|ref|ZP_01444384.1| hypothetical protein 1100011001307_R2601_00445 [Pelagibaca
bermudensis HTCC2601]
gi|114542387|gb|EAU45415.1| hypothetical protein R2601_00445 [Roseovarius sp. HTCC2601]
Length = 103
Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 31 SFLQLKDVQEACD--KSKSVPEMTQK-LQGIMFQYFIKSILPEETVKSLGGGFNGDFWQE 87
+ LQ+ Q A + P K + + + +L + + GGG + W+
Sbjct: 8 AALQVTGAQVAQPGAAAPDAPNSAIKEFEAMFLTQMVDEMLKQVEIGDFGGGQAEENWRF 67
Query: 88 ILAENISDVIVKQQRITLDLP 108
LAE S IV Q L
Sbjct: 68 FLAEAFSREIVDQGGAGLSAS 88
>gi|52841456|ref|YP_095255.1| flagellar rod assembly protein/muramidase FlgJ [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52628567|gb|AAU27308.1| muramidase, peptidoglycan hydrolase FlgJ [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 294
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 15 MGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE--- 71
M + I+ D FQ +LK +Q + +++PE+ ++ +GI Q +KS+ +
Sbjct: 2 MDMTIQSIATSD--FQGLNELK-IQAKNNAKEALPEVAKQFEGIFLQSMLKSMRMGQHFL 58
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
S G N +QE+L + I + + I L
Sbjct: 59 DESSPFSGKNEATFQEMLDAQYASTIAESKGIGL 92
>gi|163852459|ref|YP_001640502.1| hypothetical protein Mext_3042 [Methylobacterium extorquens PA1]
gi|218531215|ref|YP_002422031.1| hypothetical protein Mchl_3266 [Methylobacterium chloromethanicum
CM4]
gi|240139796|ref|YP_002964273.1| hypothetical protein MexAM1_META1p3253 [Methylobacterium extorquens
AM1]
gi|254562211|ref|YP_003069306.1| hypothetical protein METDI3818 [Methylobacterium extorquens DM4]
gi|163664064|gb|ABY31431.1| hypothetical protein Mext_3042 [Methylobacterium extorquens PA1]
gi|218523518|gb|ACK84103.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
gi|240009770|gb|ACS40996.1| conserved hypothetical protein; putative exported protein
[Methylobacterium extorquens AM1]
gi|254269489|emb|CAX25455.1| conserved hypothetical protein; putative exported protein
[Methylobacterium extorquens DM4]
Length = 119
Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 3 VLPISNISHSQSMGGN---LAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIM 59
+LP++ + S ++G L +++ D++ + +A + + +
Sbjct: 1 MLPLATFAASAAVGVGKNLLNTLAKTDANTMDTAKSTASVKAR-------KTADDFEKMF 53
Query: 60 FQYFIKSILPEE-TVKSLG-GGFNGDFWQEILAENISDVIVKQQRITLD 106
+ ++ + E T +G G G W+ ++ + ++ IVK + +
Sbjct: 54 LEDSLEKLTQSEGTEGPMGENGTGGGVWRSMMTKEYANAIVKTGGVGIS 102
>gi|221040368|dbj|BAH11452.1| peptidoglycan hydrolase FlgJ [Sphingomonas sp. A1]
Length = 313
Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 12 SQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE 71
S L +I+ D + + L+ + K Q+ + + Q +KS+
Sbjct: 10 SDERRTMLDQINTLDPNSLTALKRMSKDNSPAAIKG---AAQQFEALFLQNMLKSMRDAT 66
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
G F+Q + + ++ ++ ++ I L
Sbjct: 67 VTSDAMGSETTRFYQGLYDQQLAAMMAQRGGIGL 100
>gi|75675303|ref|YP_317724.1| chemotactic signal-response protein CheL [Nitrobacter winogradskyi
Nb-255]
gi|74420173|gb|ABA04372.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 129
Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 18/99 (18%)
Query: 18 NLAKISQ-----DDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEET 72
N+ +++ D L+ Q ++ + + F+ S+ + T
Sbjct: 16 NIQRMAPTLNRRPDPQLAQALERVPPQSVEKARA----TSEDFEAM----FLNSMFSQMT 67
Query: 73 VKSLGGGFNGD-----FWQEILAENISDVIVKQQRITLD 106
G G GD W+ +L E S K + +
Sbjct: 68 TGLKGEGPFGDTPGTGVWRSMLTEQYSRSFAKAGGVGIS 106
>gi|197105399|ref|YP_002130776.1| chemotactic signal response protein CheL [Phenylobacterium zucineum
HLK1]
gi|196478819|gb|ACG78347.1| chemotactic signal response protein CheL [Phenylobacterium zucineum
HLK1]
Length = 102
Score = 41.7 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 34 QLKDVQEACDKSKS--VPEMTQKLQGIMFQYFIKSILP-EETVKSLGGGFNGDFWQEILA 90
Q D +K + + +K + ++ + + GGG D ++ ++
Sbjct: 13 QTPIAGRTEDLAKRARIRDAAEKFEAQFLAIMLQPMFEGTQVEAPFGGGPGEDMFRSLMT 72
Query: 91 ENISDVIVKQQRITL 105
E + + I L
Sbjct: 73 EAMGKQMASAGGIGL 87
>gi|192292799|ref|YP_001993404.1| chemotactic signal-response protein CheL [Rhodopseudomonas
palustris TIE-1]
gi|192286548|gb|ACF02929.1| chemotactic signal-response protein CheL [Rhodopseudomonas
palustris TIE-1]
Length = 111
Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 24 QDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD 83
+ D + L Q DK++ + + + F+ ++ + T G G GD
Sbjct: 17 RPDFALAEALSKVPAQ-MQDKTRK---TAKDFEAM----FLNTMFSQMTSGLKGEGPFGD 68
Query: 84 -----FWQEILAENISDVIVKQQRITL 105
W+ +L E S ++ K + +
Sbjct: 69 TVGTGVWRSMLTEQHSQMVAKAGGVGI 95
>gi|54294168|ref|YP_126583.1| peptidoglycan hydrolase [Legionella pneumophila str. Lens]
gi|53754000|emb|CAH15471.1| flagellar biosynthesis protein FlgJ [Legionella pneumophila str.
Lens]
Length = 291
Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 19 LAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSI---LPEETVKS 75
+ I+ D FQ +LK VQ + +++PE+ ++ +GI Q +KS+ L S
Sbjct: 3 IQSIATSD--FQGLNELK-VQAKNNAKEALPEVAKQFEGIFLQSMLKSMRMGLHFLDESS 59
Query: 76 LGGGFNGDFWQEILAENISDVIVKQQRITL 105
G N +QE+L + I + + I L
Sbjct: 60 PFSGKNEATFQEMLDTQYASTIAESKGIGL 89
>gi|39936971|ref|NP_949247.1| chemotactic signal-response protein CheL [Rhodopseudomonas
palustris CGA009]
gi|39650828|emb|CAE29351.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 112
Score = 41.3 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 24 QDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD 83
+ D + L Q DK++ + + + F+ ++ + T G G GD
Sbjct: 18 RPDFALAEALSKVPAQ-MQDKTRK---TAKDFEAM----FLNTMFSQMTSGLKGEGPFGD 69
Query: 84 -----FWQEILAENISDVIVKQQRITL 105
W+ +L E S ++ K + +
Sbjct: 70 TVGTGVWRSMLTEQHSQMVAKAGGVGI 96
>gi|54297187|ref|YP_123556.1| flagellar rod assembly protein/muramidase FlgJ [Legionella
pneumophila str. Paris]
gi|53750972|emb|CAH12383.1| flagellar biosynthesis protein FlgJ [Legionella pneumophila str.
Paris]
Length = 291
Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 19 LAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGG 78
+ I+ D FQ +LK +Q + +++PE+ ++ +GI Q +KS+ +
Sbjct: 3 IQSIATSD--FQGLNELK-IQAKNNAKEALPEVAKQFEGIFLQSMLKSMRMGQHFLDESS 59
Query: 79 GFNGD---FWQEILAENISDVIVKQQRITL 105
F+G+ +QE+L + I + + I L
Sbjct: 60 PFSGENEATFQEMLDAQYASTIAESKGIGL 89
>gi|307609982|emb|CBW99511.1| flagellar biosynthesis protein FlgJ [Legionella pneumophila 130b]
Length = 291
Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 19 LAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE---TVKS 75
+ I+ D FQ +LK VQ + +++PE+ ++ +GI Q +KS+ + S
Sbjct: 3 IQSIATSD--FQGLNELK-VQAKNNAKEALPEVAKQFEGIFLQSMLKSMRMGQHFLDESS 59
Query: 76 LGGGFNGDFWQEILAENISDVIVKQQRITL 105
G N +QE+L + I + + I L
Sbjct: 60 PFSGKNEATFQEMLDTQYASTIAESKGIGL 89
>gi|316932813|ref|YP_004107795.1| flagellar protein FlgJ-like protein [Rhodopseudomonas palustris
DX-1]
gi|315600527|gb|ADU43062.1| Flagellar protein FlgJ-like protein [Rhodopseudomonas palustris
DX-1]
Length = 111
Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 24 QDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD 83
+ D + L Q K + + + F+ ++ + T G G GD
Sbjct: 17 RPDFTLAEALSKLPAQ----VKKKAEATAKDFEAM----FLNTMFSQMTTGLKGDGPFGD 68
Query: 84 -----FWQEILAENISDVIVKQQRITL 105
W+ +L E S I K + +
Sbjct: 69 TVGTGVWRSMLTEQHSQAIAKAGGVGI 95
>gi|167647652|ref|YP_001685315.1| chemotactic signal-response protein CheL [Caulobacter sp. K31]
gi|167350082|gb|ABZ72817.1| chemotactic signal-response protein CheL [Caulobacter sp. K31]
Length = 105
Score = 40.5 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 47 SVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNG-DFWQEILAENISDVIVKQQRITL 105
+ E +K + ++S+ +GGG G D ++ +L E ++ + K I +
Sbjct: 30 KIKETAEKFEASFLSIMMQSMTAGMKTPEIGGGGAGEDMFKSLLTEEMAKHVAKAGGIGV 89
>gi|83312924|ref|YP_423188.1| chemotactic signal-response protein cheL [Magnetospirillum
magneticum AMB-1]
gi|82947765|dbj|BAE52629.1| Chemotactic signal-response protein cheL [Magnetospirillum
magneticum AMB-1]
Length = 107
Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 53 QKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVI-VKQQRITL 105
++ + + IKS+ +T GGG + ++ +L + ++ K I +
Sbjct: 38 RQFEAMFMGQMIKSMFEGIKTDGIFGGGSGEEMFRSLLTDEYGKMMAAKGNGIGI 92
>gi|148358811|ref|YP_001250018.1| peptidoglycan hydrolase FlgJ [Legionella pneumophila str. Corby]
gi|296106856|ref|YP_003618556.1| muramidase, peptidoglycan hydrolase FlgJ [Legionella pneumophila
2300/99 Alcoy]
gi|148280584|gb|ABQ54672.1| muramidase, peptidoglycan hydrolase FlgJ [Legionella pneumophila
str. Corby]
gi|295648757|gb|ADG24604.1| muramidase, peptidoglycan hydrolase FlgJ [Legionella pneumophila
2300/99 Alcoy]
Length = 291
Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 19 LAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE---TVKS 75
+ I+ D FQ +LK VQ + +++PE+ ++ +GI Q +KS+ + S
Sbjct: 3 IQSIATSD--FQGLNELK-VQAKNNAKEALPEVAEQFEGIFLQSMLKSMRMGQHFLDESS 59
Query: 76 LGGGFNGDFWQEILAENISDVIVKQQRITL 105
G N +QE+L + I + + I L
Sbjct: 60 PFSGKNEATFQEMLDTQYASTIAESKGIGL 89
>gi|209964696|ref|YP_002297611.1| chemotactic signal-response protein CheL, putative [Rhodospirillum
centenum SW]
gi|209958162|gb|ACI98798.1| chemotactic signal-response protein CheL, putative [Rhodospirillum
centenum SW]
Length = 117
Score = 40.1 bits (92), Expect = 0.089, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 47 SVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ Q+ +G+ + + E GGG + ++ ++ E I K + +
Sbjct: 33 QIDRSAQEFEGVFISQMLSHMWSSVEVDPVFGGGPAEETFRGLMIEEQGKAIAKAGGLGI 92
>gi|90423007|ref|YP_531377.1| chemotactic signal-response protein CheL [Rhodopseudomonas
palustris BisB18]
gi|90105021|gb|ABD87058.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 115
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 6 ISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSK-SVPEMTQKLQGIMFQYFI 64
I + +H S + D L+ + +++ + + + F+
Sbjct: 2 IGSATHGYSAAAIPTINGRPDIELAEALK-----KVSPQTQAKMKTQATDFEAM----FL 52
Query: 65 KSILPEETVKSLGGGFNGD-----FWQEILAENISDVIVKQQRITLD 106
S+ + T G G GD W+ +L + S K I +
Sbjct: 53 NSMFSQMTSSIKGEGPFGDTVGTGVWRSMLTDQYSKSFAKAGGIGVS 99
>gi|23011724|ref|ZP_00052000.1| hypothetical protein Magn03006320 [Magnetospirillum magnetotacticum
MS-1]
Length = 119
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 55 LQGIMFQYFIKSILPEE-TVKSLG-GGFNGDFWQEILAENISDVIVKQQRITLD 106
+ + + ++ + E T LG G G W+ +L + ++ IVK + +
Sbjct: 49 FEKMFLEDSLEKLTQSEGTEGPLGENGTGGGVWRSMLTKEYANAIVKTGGVGIS 102
>gi|46578932|ref|YP_009740.1| M24/M37 family peptidase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46448344|gb|AAS94999.1| peptidase, M23/M37 family [Desulfovibrio vulgaris str.
Hildenborough]
gi|311232790|gb|ADP85644.1| Peptidase M23 [Desulfovibrio vulgaris RCH1]
Length = 610
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 5 PISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFI 64
P+++ S +++ + S + Q Q DK+K + E + + + Q
Sbjct: 4 PLTDPSLARAA-SQQDDLVARKRSLDALRQRVGAQ--PDKAKKLREACEGFESVFLQKVW 60
Query: 65 KSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + + FWQ + + ++ + I L
Sbjct: 61 EQMRTTVPKEGYLHSREEQFWQSMFDQELAKKMSSAGGIGL 101
>gi|89068723|ref|ZP_01156109.1| hypothetical protein OG2516_06781 [Oceanicola granulosus HTCC2516]
gi|89045686|gb|EAR51748.1| hypothetical protein OG2516_06781 [Oceanicola granulosus HTCC2516]
Length = 106
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 28 SFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQE 87
S + + EA + +V + + + ++ ++ GGG + W+
Sbjct: 13 PASSAARPRGAGEAEARKIAV-----EFEAVFLTQAVEQMMSTVEGGIFGGGHAEETWRG 67
Query: 88 ILAENISDVIVKQQRITL 105
L+ ++ + K +
Sbjct: 68 FLSRAFAEEVAKGGTTGI 85
>gi|254488428|ref|ZP_05101633.1| chemotactic signal-response protein, putative [Roseobacter sp.
GAI101]
gi|214045297|gb|EEB85935.1| chemotactic signal-response protein, putative [Roseobacter sp.
GAI101]
Length = 92
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 43 DKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQR 102
K K + E QKL+ +KS E ++ GGG D + L + + +VK
Sbjct: 15 PKDKLIFEAAQKLEATFLAEMLKSAGFGEARETFGGGAGEDQFGSFLVQEQAMQMVKAGG 74
Query: 103 ITLD 106
I L
Sbjct: 75 IGLS 78
>gi|188587422|ref|YP_001918967.1| Rod binding protein-like protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179352109|gb|ACB86379.1| Rod binding protein-like protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 135
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 34 QLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSI---LPEETVKSLGGGFNGDFWQEILA 90
Q +D +S+ + + QK +G+ Q +KS+ +PE + GGF D ++ L
Sbjct: 50 QSQDANAQEKESQELYQAAQKFEGMFIQEMMKSMRETIPES--DLIDGGFAEDVFESKLD 107
Query: 91 ENISDVIVKQQRITL 105
++ S+ + + L
Sbjct: 108 QHYSEKMAESGGFGL 122
>gi|120603467|ref|YP_967867.1| peptidase M23B [Desulfovibrio vulgaris DP4]
gi|120563696|gb|ABM29440.1| peptidase M23B [Desulfovibrio vulgaris DP4]
Length = 610
Score = 38.6 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 5 PISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFI 64
P+++ S +++ + S + Q Q DK+K + E + + + Q
Sbjct: 4 PLTDPSLARAA-SQQDDLVARKRSIDALRQRVGAQ--PDKAKKLREACEGFESVFLQKVW 60
Query: 65 KSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + + FWQ + + ++ + I L
Sbjct: 61 EQMRTTVPKEGYLHSREEQFWQSMFDQELAKKMSSAGGIGL 101
>gi|254496892|ref|ZP_05109740.1| peptidoglycan hydrolase [Legionella drancourtii LLAP12]
gi|254353911|gb|EET12598.1| peptidoglycan hydrolase [Legionella drancourtii LLAP12]
Length = 301
Score = 38.6 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 27 SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE---TVKSLGGGFNGD 83
S F +LK Q D + PE+ ++ + + Q +KS+ E S G + +
Sbjct: 9 SDFAGLTELK-AQAVKDAKGTAPEVAKQFEALFLQSMLKSMRMGEHFLDESSPFRGKDRE 67
Query: 84 FWQEILAENISDVIVKQQRITL 105
+QE+L + I + I L
Sbjct: 68 TFQEMLDAQYASNIAGSRGIGL 89
>gi|296534165|ref|ZP_06896658.1| chemotactic signal-response protein CheL [Roseomonas cervicalis
ATCC 49957]
gi|296265511|gb|EFH11643.1| chemotactic signal-response protein CheL [Roseomonas cervicalis
ATCC 49957]
Length = 108
Score = 38.6 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 41 ACDKSKSVPEMTQ---KLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDV 96
A + +S+PEM + + + + ++ + + GG W+ +L E
Sbjct: 20 AAPRGQSLPEMRKAAEQFEAQVLGALLQPVFATLPSNGLFSGGAAEAQWRPMLVEEYGRS 79
Query: 97 IVKQQRITL 105
+ + + +
Sbjct: 80 LTRAGGVGI 88
>gi|148256803|ref|YP_001241388.1| chemotactic signal-response protein CheL [Bradyrhizobium sp. BTAi1]
gi|146408976|gb|ABQ37482.1| hypothetical protein BBta_5521 [Bradyrhizobium sp. BTAi1]
Length = 130
Score = 38.6 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 55 LQGIMFQYFIKSILPEETVKSLGGGFNGD-----FWQEILAENISDVIVKQQRITLD 106
+ + F+ S+ + T G G GD W+ +L E S K + L
Sbjct: 54 FEAM----FLNSMFAQMTSGVKGDGPFGDTPSTGVWRSMLMEQYSKNFAKAGGVGLS 106
>gi|296283245|ref|ZP_06861243.1| hypothetical protein CbatJ_06471 [Citromicrobium bathyomarinum
JL354]
Length = 104
Score = 38.6 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 47 SVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + ++ + + K +L E GG ++ +LAE + I ++ + L
Sbjct: 29 EIAKTAEEFEAVFLGEMSKLMLESVEMGDEFSGGHAEQIFRGVLAEKLGAEIARRGGVGL 88
>gi|27380950|ref|NP_772479.1| chemotactic signal-response protein CheL [Bradyrhizobium japonicum
USDA 110]
gi|27354116|dbj|BAC51104.1| blr5839 [Bradyrhizobium japonicum USDA 110]
Length = 123
Score = 38.6 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 24 QDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD 83
+ D + LQ Q+ K + + F+ S+ + T G G GD
Sbjct: 26 RPDFELAAALQKVSPQQQAKAQK----TATDFEAM----FLNSMFSQMTSGLKGEGPFGD 77
Query: 84 -----FWQEILAENISDVIVKQQRITL 105
W+ +L E S K + +
Sbjct: 78 TTGTGVWRSMLTEQYSKNFAKAGGVGV 104
>gi|88813659|ref|ZP_01128888.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Nitrococcus
mobilis Nb-231]
gi|88789077|gb|EAR20215.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Nitrococcus
mobilis Nb-231]
Length = 315
Score = 38.6 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 23 SQDDSSFQSFLQLKDVQEACDKSKS-VPEMTQ----KLQGIMFQYFIKSILPEETVKSLG 77
Q +S+ + L + +++ + ++ PE + + + + Q +KS+ SL
Sbjct: 3 VQKITSYDNALDGRRLEKLRYELRNPTPESLRTVAKQFESLFVQSLLKSMRAATPGGSLF 62
Query: 78 GGFNGDFWQEILAENISDVIVKQQRITL 105
G ++ +L + ++ I + + I L
Sbjct: 63 SGHGVKQYRSLLDQQLASSIAQGRGIGL 90
>gi|92116898|ref|YP_576627.1| chemotactic signal-response protein CheL [Nitrobacter hamburgensis
X14]
gi|91799792|gb|ABE62167.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 131
Score = 38.6 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 24 QDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD 83
+ D Q L+ Q +Q + + F+ S+ + T G G GD
Sbjct: 29 RPDPQLQQALEKVSPQAVQKART----TSQDFEAM----FLNSMFSQMTTGLKGEGPFGD 80
Query: 84 -----FWQEILAENISDVIVKQQRITLD 106
W+ +L E S + + +
Sbjct: 81 TPGTGVWRSMLTEQYSKSFAQAGGVGVS 108
>gi|84502371|ref|ZP_01000507.1| hypothetical protein OB2597_20186 [Oceanicola batsensis HTCC2597]
gi|84389183|gb|EAQ01980.1| hypothetical protein OB2597_20186 [Oceanicola batsensis HTCC2597]
Length = 107
Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + + ++ +L V S+ GGF + W+ LA +D + + +
Sbjct: 33 RDFESVFLTQVMEEMLKTVEVGSMAGGFAEETWRSFLARAYADELAARGTTGI 85
>gi|85715044|ref|ZP_01046029.1| hypothetical protein NB311A_11747 [Nitrobacter sp. Nb-311A]
gi|85698241|gb|EAQ36113.1| hypothetical protein NB311A_11747 [Nitrobacter sp. Nb-311A]
Length = 129
Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD-----FWQEILAENISDVIVKQ 100
+ ++ + + F+ S+ + T G G GD W+ +L E S K
Sbjct: 45 EKAKATSEDFEAM----FLNSMFSQMTTGLKGEGPFGDTPGTGVWRSMLTEQYSRSFAKA 100
Query: 101 QRITLD 106
+ +
Sbjct: 101 GGVGVS 106
>gi|94987187|ref|YP_595120.1| membrane proteins related to metalloendopeptidases [Lawsonia
intracellularis PHE/MN1-00]
gi|94731436|emb|CAJ54799.1| membrane proteins related to metalloendopeptidases [Lawsonia
intracellularis PHE/MN1-00]
Length = 227
Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 8 NISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSI 67
+++ + + NL +I + +Q D A K K + E + + I Q +S+
Sbjct: 8 SLAQNSAEEQNLKEIKRKA---DKEIQNLDPNAAAAKEKKLREAAEGFEAIFIQQMWQSM 64
Query: 68 LPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + FWQ + + + + I L
Sbjct: 65 RASLPKEGIMHSREEQFWQGMYDQELGKSMASAGGIGL 102
>gi|71906396|ref|YP_283983.1| mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
[Dechloromonas aromatica RCB]
gi|71846017|gb|AAZ45513.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
[Dechloromonas aromatica RCB]
Length = 324
Score = 37.8 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 26 DSSFQSFLQLKDVQEACDKSKSVPE-----MTQKLQGIMFQYFIKSILPEETVKSLGGGF 80
D+ ++ + Q+ + + P+ Q+ + + Q IKS+ L
Sbjct: 7 DTPNRAAFDVTSAQDLRSRFQKDPQQGLKAAAQQFETLFLQQVIKSMRDATPQDGLMSSD 66
Query: 81 NGDFWQEILAENISDVIVKQQ-RITL 105
+ F+ +L + ++ + I
Sbjct: 67 SSRFYTGLLDQQMAQNLATNGKGIGF 92
>gi|254292899|ref|YP_003058922.1| hypothetical protein Hbal_0523 [Hirschia baltica ATCC 49814]
gi|254041430|gb|ACT58225.1| hypothetical protein Hbal_0523 [Hirschia baltica ATCC 49814]
Length = 108
Score = 37.8 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRIT 104
+ EM Q+ + + ++ I + ET GGG D ++ +L E + + +
Sbjct: 32 EKAEEMAQEFETMFLSEMLQPIFNQIETDGPFGGGQAEDAFRPMLTEEYAKSLSSAGGVG 91
Query: 105 L 105
+
Sbjct: 92 I 92
>gi|295688538|ref|YP_003592231.1| Flagellar protein FlgJ-like protein [Caulobacter segnis ATCC 21756]
gi|295430441|gb|ADG09613.1| Flagellar protein FlgJ-like protein [Caulobacter segnis ATCC 21756]
Length = 110
Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 47 SVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ E Q + ++ + +T + GGG + ++ ++AE ++ + + I L
Sbjct: 35 KIKETAQNFEASFLSVMMQQMFEGVKTSEPFGGGQGEEMFKSVMAEAMAKQVTRAGGIGL 94
>gi|307546963|ref|YP_003899442.1| peptidoglycan hydrolase [Halomonas elongata DSM 2581]
gi|307218987|emb|CBV44257.1| peptidoglycan hydrolase [Halomonas elongata DSM 2581]
Length = 326
Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 34 QLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENI 93
+LK + + + + +K + + Q +KS+ L N DF+ +L + +
Sbjct: 22 RLKHTARSAPQ-EGLESAAKKFEAMFVQMMMKSMRDAVPSSGLLDDRNTDFYTSMLDKQL 80
Query: 94 SDVIVKQQ 101
S I ++
Sbjct: 81 SQHIAERG 88
>gi|159045903|ref|YP_001534697.1| putative flagellar protein FlgJ [Dinoroseobacter shibae DFL 12]
gi|157913663|gb|ABV95096.1| putative flagellar protein FlgJ [Dinoroseobacter shibae DFL 12]
Length = 100
Score = 37.4 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%)
Query: 29 FQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEI 88
F L Q+A S ++ + + L+ +K T +++GGG D +
Sbjct: 7 FSPALSTARAQDAQSGSSALEQAAKDLEAAFLSVMLKEARFGVTPETMGGGVGEDQFASF 66
Query: 89 LAENISDVIVKQQRITL 105
L + + +V+ I L
Sbjct: 67 LRDEHAKALVENGGIGL 83
>gi|146341916|ref|YP_001206964.1| chemotactic signal-response protein CheL [Bradyrhizobium sp.
ORS278]
gi|146194722|emb|CAL78747.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 138
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 55 LQGIMFQYFIKSILPEETVKSLGGGFNGD-----FWQEILAENISDVIVKQQRITLD 106
+ + F+ S+ + G G GD W+ +L E S K + +
Sbjct: 54 FEAM----FLNSMFSQMMSGVKGDGPFGDTPGTGVWRSMLTEQYSKNFAKAGGVGIS 106
>gi|149375028|ref|ZP_01892801.1| Muramidase (flagellum-specific) [Marinobacter algicola DG893]
gi|149360917|gb|EDM49368.1| Muramidase (flagellum-specific) [Marinobacter algicola DG893]
Length = 329
Score = 37.0 bits (84), Expect = 0.76, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 16 GGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKS 75
+L K +Q + F LK DK ++ E+ ++ +G+ +K++ +
Sbjct: 3 DSSLQK-AQVYTDFGGLNALKAQART-DKEAALEEVAKQFEGLFLSEMVKAM--RKAGDV 58
Query: 76 LGGGFN-----GDFWQEILAENISDVIVKQQRITLD 106
G +F++E+ +S + ++Q +
Sbjct: 59 FAEGNYLNSQQSEFYREMFDSQLSLTLSQKQGTGIS 94
>gi|307945672|ref|ZP_07661008.1| chemotactic signal-response protein CheL [Roseibium sp. TrichSKD4]
gi|307771545|gb|EFO30770.1| chemotactic signal-response protein CheL [Roseibium sp. TrichSKD4]
Length = 103
Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 54 KLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + + ++ + E + G G + W+ +L ++ I I L
Sbjct: 35 EFEAVFLNNMLQMMFTGLEEGGTWGAGNGAEAWRGLLVNEYAESIADAGGIGL 87
>gi|255021359|ref|ZP_05293407.1| Flagellar protein flgJ (peptidoglycan hydrolase) [Acidithiobacillus
caldus ATCC 51756]
gi|254969222|gb|EET26736.1| Flagellar protein flgJ (peptidoglycan hydrolase) [Acidithiobacillus
caldus ATCC 51756]
Length = 319
Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 9 ISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSIL 68
+S S + ++ + SF +L++ A D + ++ + ++ + ++ Q + S+
Sbjct: 1 MSGSAVLPQTTTTVAGNALSFSGLDRLREEARAHDPA-AILAVAKQFESVLLQELLSSM- 58
Query: 69 PEETVKSLGGGFNGD----FWQEILAENISDVIVKQQRITL 105
+ S G G+ ++ + + I+ I + + I L
Sbjct: 59 ---SKTSFGPDLLGENAGPMYRSLFNQQIAQNISEGKGIGL 96
>gi|77918756|ref|YP_356571.1| putative FlgJ-like flagellar protein [Pelobacter carbinolicus DSM
2380]
gi|77544839|gb|ABA88401.1| putative FlgJ-like flagellar protein [Pelobacter carbinolicus DSM
2380]
Length = 108
Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 43 DKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQ 101
++++S+ + Q + IM + +K + LG G + + +++++ + ++ + + Q
Sbjct: 27 NEAESLRKSCQDFEAIMLKSMLKEMRSTIPKDGLLGEGNDQEMFRDLMDQEVAMQMSRTQ 86
Query: 102 RITL 105
I +
Sbjct: 87 GIGI 90
>gi|296234367|ref|XP_002762423.1| PREDICTED: interferon regulatory factor 3 [Callithrix jacchus]
Length = 427
Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 12 SQSMGGNLAKISQDDSS-----FQSFLQLKDVQEACDKSKSVPEMTQKLQGIM---FQYF 63
+++ G + + D F+S L KD D P K+ + F
Sbjct: 58 AEATGAYVPGRDKPDPPTWKRNFRSALNRKDGLRLADDRSKDPHDPHKIYEFVNSAVGNF 117
Query: 64 IKSILPEETVKSLGGGFNGDFWQEILAENISDVI 97
+ P+ + + GGG D ++IL E + +++
Sbjct: 118 AQ---PDTSPDTSGGGSTFDTQEDILDELLGNMV 148
>gi|209884519|ref|YP_002288376.1| hypothetical protein OCAR_5379 [Oligotropha carboxidovorans OM5]
gi|209872715|gb|ACI92511.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
Length = 108
Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 23 SQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFN 81
S+ D F L+ +++K+ + Q + + + ++ G +
Sbjct: 12 SRPDPVFAQALEK---VSPENQAKTKAKA-QDFEAVFLNAMFAQMTAGLKSEGPFGDTPS 67
Query: 82 GDFWQEILAENISDVIVKQQRITL 105
W+ ++ + + + I +
Sbjct: 68 TGVWRSMMTDQYARSFAQAGGIGI 91
>gi|322421658|ref|YP_004200881.1| Flagellar protein FlgJ-like protein [Geobacter sp. M18]
gi|320128045|gb|ADW15605.1| Flagellar protein FlgJ-like protein [Geobacter sp. M18]
Length = 114
Score = 36.6 bits (83), Expect = 1.00, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 21 KISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGF 80
K D++ + L+ + + + V ++ ++ + + +KS+ ++L GG
Sbjct: 4 KPIPDNALPVADLRAQQKSRQGENPEKVRKVAREFEAMFVAMMLKSMRDTVGKETLTGGG 63
Query: 81 NGD-FWQEILAENISDVIVKQQRITL 105
G+ ++ +L + ++ V+ I L
Sbjct: 64 KGEETFRSLLDQEYANAAVQGGGIGL 89
>gi|288962669|ref|YP_003452963.1| hypothetical protein AZL_e00740 [Azospirillum sp. B510]
gi|288914935|dbj|BAI76419.1| hypothetical protein AZL_e00740 [Azospirillum sp. B510]
Length = 119
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 41 ACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSL--GGGFNGDFWQEILAENISDVIV 98
A + + ++ + ++ ++S+ L GGG W+ ++ + I
Sbjct: 29 AIPSPAAADKAAKEFEAMLVGQLMESMFAGMRESPLFGGGGPAEKPWRSMMLQEYGKAIA 88
Query: 99 KQQRITL 105
+ + +
Sbjct: 89 QSGTLGI 95
>gi|224142663|ref|XP_002324674.1| predicted protein [Populus trichocarpa]
gi|222866108|gb|EEF03239.1| predicted protein [Populus trichocarpa]
Length = 356
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 27 SSFQSFL-QLKDVQ--EACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD 83
++F +++ Q KD + + +P + KL+ + ++ LG G G
Sbjct: 25 TNFTTWISQAKDAIQGKNAPEDIEIPALPSKLKVFTLEQLKEATFDFRNDMVLGKGGFGS 84
Query: 84 FWQEILAENISDVIVKQQRITL 105
++ L E +S ++ RI +
Sbjct: 85 VYKGSLKEKVSFKKSRKLRIAI 106
>gi|254516994|ref|ZP_05129052.1| flagellar rod assembly protein/muramidase FlgJ [gamma
proteobacterium NOR5-3]
gi|219674499|gb|EED30867.1| flagellar rod assembly protein/muramidase FlgJ [gamma
proteobacterium NOR5-3]
Length = 323
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 27 SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQ 86
S F S L+ D S+ E+ ++ + + Q +KS+ L + +Q
Sbjct: 8 SDFNSLANLRTAAR-QDADASLEEVAKQFESLFVQMMLKSMREATMEGGLFDSHQMESYQ 66
Query: 87 EILAENISDVIVKQQRITL 105
++ + +S + + I L
Sbjct: 67 QMHDQQLSLDLASRGGIGL 85
>gi|299131794|ref|ZP_07024989.1| Flagellar protein FlgJ-like protein [Afipia sp. 1NLS2]
gi|298591931|gb|EFI52131.1| Flagellar protein FlgJ-like protein [Afipia sp. 1NLS2]
Length = 108
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 19/103 (18%)
Query: 4 LPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQY- 62
+P+ N LAK+S ++ Q K +A D + +
Sbjct: 7 IPLVNGRPDPVFAQALAKVSPEN-------QAKAKTKAED-----------FEAVFLNSM 48
Query: 63 FIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
F + + + G + W+ ++ + + K I +
Sbjct: 49 FSQMMSGVKGEGPFGDTQSTGVWRSMMVDQYARSFAKAGGIGI 91
>gi|254475620|ref|ZP_05089006.1| flagellar protein FlgJ, putative [Ruegeria sp. R11]
gi|214029863|gb|EEB70698.1| flagellar protein FlgJ, putative [Ruegeria sp. R11]
Length = 96
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 31 SFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILA 90
+Q + ++ + + + Q L+ +KS ET +++GGG D + L
Sbjct: 8 PSVQRAGIIKSQPQ-DPLRKAAQDLEATFLTEMLKSAGLGETSETMGGGAGEDQFSSFLV 66
Query: 91 ENISDVIVKQQRITL 105
++ I K I L
Sbjct: 67 RAQAEQITKAGGIGL 81
>gi|312136038|ref|YP_004003376.1| flagellar protein FlgJ-like protein [Caldicellulosiruptor
owensensis OL]
gi|311776089|gb|ADQ05576.1| Flagellar protein FlgJ-like protein [Caldicellulosiruptor
owensensis OL]
Length = 116
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 30 QSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEI 88
S ++ + + + + E ++ + IM K + G D + E+
Sbjct: 19 NSIIEKLEKAYSEKDKQKLKEACEEFEAIMLSTIFKQMQKSIPKGGLFKEGIAEDIFNEM 78
Query: 89 LAENISDVIVKQQRITLD 106
+ +S KQ I L
Sbjct: 79 FVDEVSRSASKQGGIGLS 96
>gi|332799999|ref|YP_004461498.1| Flagellar protein FlgJ [Tepidanaerobacter sp. Re1]
gi|332697734|gb|AEE92191.1| Flagellar protein FlgJ [Tepidanaerobacter sp. Re1]
Length = 101
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETV-KSLGGGFNGDFWQEILAENISDVIVKQQRIT 104
+ E+ Q+ + I Y +KS+ G D Q + E +++ I + I
Sbjct: 29 TELKEVCQQFESIFLNYMLKSMRDTIPDGGMFEKGVTFDIMQSMHDEALAEEISQNGGIG 88
Query: 105 L 105
L
Sbjct: 89 L 89
>gi|237653578|ref|YP_002889892.1| flagellar rod assembly protein/muramidase FlgJ [Thauera sp. MZ1T]
gi|237624825|gb|ACR01515.1| flagellar rod assembly protein/muramidase FlgJ [Thauera sp. MZ1T]
Length = 352
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 21/54 (38%)
Query: 53 QKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLD 106
++ +G+ Q +KS+ + WQ +L + ++ + + L
Sbjct: 37 RQFEGLFLQMVMKSMRATTGQNGMMDSEQTRSWQGMLDQQMALEMSQSGGTGLS 90
>gi|254470495|ref|ZP_05083899.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211960806|gb|EEA96002.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 109
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 11/92 (11%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 19 LAKISQDDSSFQSFLQLKDVQEA---CDKSKS-VPEMTQKLQGIMFQYFIKSILPEETVK 74
L + + S +L + +A K + E ++ + + ++++
Sbjct: 2 LQQAQLPSPALASSAELINGAKANGNAPAGKDPLWEKAKEFESVFLNEMLQNMFTGLDEG 61
Query: 75 -SLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ G D W+ +L ++ + + I +
Sbjct: 62 GTYGTEEGSDAWKSMLINEYANTMSQSGGIGI 93
>gi|188582480|ref|YP_001925925.1| hypothetical protein Mpop_3239 [Methylobacterium populi BJ001]
gi|179345978|gb|ACB81390.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 119
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 55 LQGIMFQYFIKSILPEE-TVKSLG-GGFNGDFWQEILAENISDVIVKQQRITLD 106
+ + + ++ + T LG G G W+ +L + ++ IVK + +
Sbjct: 49 FEKMFLEDSLERLTQSAGTDGPLGENGTGGGVWRSMLTKEYANAIVKTGGVGIS 102
>gi|312794498|ref|YP_004027421.1| flagellar protein FlgJ-like protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181638|gb|ADQ41808.1| Flagellar protein FlgJ-like protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 116
Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 41 ACDKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVK 99
+ + + E ++ + IM K + G D + ++ + +S K
Sbjct: 30 SEKDKQKLKEACEEFEAIMLSTIFKQMQKSIPKGGLFKEGIADDIFNDMFVDEVSKSASK 89
Query: 100 QQRITLD 106
Q I L
Sbjct: 90 QGGIGLS 96
>gi|302872711|ref|YP_003841347.1| Flagellar protein FlgJ-like [Caldicellulosiruptor obsidiansis OB47]
gi|302575570|gb|ADL43361.1| Flagellar protein FlgJ-like [Caldicellulosiruptor obsidiansis OB47]
Length = 116
Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 41 ACDKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVK 99
+ + + E ++ + IM K + G D + ++ + +S K
Sbjct: 30 SEKDKQKLKEACEEFEAIMLSTIFKQMQKSIPKGGLFKEGIADDIFNDMFVDEVSKSASK 89
Query: 100 QQRITLD 106
Q I L
Sbjct: 90 QGGIGLS 96
>gi|254500877|ref|ZP_05113028.1| hypothetical protein SADFL11_913 [Labrenzia alexandrii DFL-11]
gi|222436948|gb|EEE43627.1| hypothetical protein SADFL11_913 [Labrenzia alexandrii DFL-11]
Length = 95
Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 53 QKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
++ + + ++S+ E + GGG D WQ +L + + I + +
Sbjct: 26 EEFEAVFLNNMLQSMFSGLENGGAWGGGTGSDTWQSMLVDEYARTISAAGGVGI 79
>gi|312876701|ref|ZP_07736681.1| Flagellar protein FlgJ-like [Caldicellulosiruptor lactoaceticus 6A]
gi|311796541|gb|EFR12890.1| Flagellar protein FlgJ-like [Caldicellulosiruptor lactoaceticus 6A]
Length = 116
Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 41 ACDKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVK 99
+ + + E ++ + IM K + G D + ++ + +S K
Sbjct: 30 SEKDKQKLKEACEEFEAIMLSTIFKQMQKSIPKGGLFKEGIADDIFNDMFVDEVSKSASK 89
Query: 100 QQRITLD 106
Q I L
Sbjct: 90 QGGIGLS 96
>gi|329889950|ref|ZP_08268293.1| rod binding family protein [Brevundimonas diminuta ATCC 11568]
gi|328845251|gb|EGF94815.1| rod binding family protein [Brevundimonas diminuta ATCC 11568]
Length = 102
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 50 EMTQK----LQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVKQQRIT 104
E ++ + +K + T GGG W+ L + ++ VK +
Sbjct: 26 EAMRRTAEAFEASFLSQMMKPMFEGLSTEAPFGGGAGEAAWRGFLVDAMAQQTVKAGGVG 85
Query: 105 L 105
L
Sbjct: 86 L 86
>gi|209545544|ref|YP_002277773.1| putative chemotactic signal-response protein CheL
[Gluconacetobacter diazotrophicus PAl 5]
gi|209533221|gb|ACI53158.1| putative chemotactic signal-response protein CheL
[Gluconacetobacter diazotrophicus PAl 5]
Length = 108
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 14 SMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILP--EE 71
S+G A +S KD + A K+ E +G+ I+ + +
Sbjct: 2 SIGSIAASLSSVQQQLSPAPSAKDTRTAEQAHKAAVE----FEGLTIGELIQPMFDTVDT 57
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
T GGG ++ + + I I L
Sbjct: 58 TNDMFGGGAAESQFRSLQVSEMGKKIANSGGIGL 91
>gi|238782797|ref|ZP_04626826.1| Peptidoglycan hydrolase [Yersinia bercovieri ATCC 43970]
gi|238716220|gb|EEQ08203.1| Peptidoglycan hydrolase [Yersinia bercovieri ATCC 43970]
Length = 300
Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 26/60 (43%)
Query: 46 KSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ + E ++++G+ Q +KS+ L D + + + IS I +Q ++
Sbjct: 7 QGIKEAAKQMEGMFIQMMLKSMRDASFKDGLLNSQQSDMFTSMYDQQISQDIAQQSKMGF 66
>gi|162147434|ref|YP_001601895.1| chemotactic signal-response protein cheL [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786011|emb|CAP55593.1| putative chemotactic signal-response protein cheL
[Gluconacetobacter diazotrophicus PAl 5]
Length = 108
Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 14 SMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILP--EE 71
S+G A +S KD + A K+ E +G+ I+ + +
Sbjct: 2 SIGSIAASLSSVQQQLSPAPSAKDTRTAEQAHKAAVE----FEGLTIGELIQPMFDTVDT 57
Query: 72 TVKSLGGGFNGDFWQEILAENISDVIVKQQRITL 105
+ GGG ++ + + I I L
Sbjct: 58 SNDMFGGGAAESQFRSLQVSEMGKQIANSGGIGL 91
>gi|58039090|ref|YP_191054.1| chemotactic signal-response protein CheL [Gluconobacter oxydans
621H]
gi|58001504|gb|AAW60398.1| Chemotactic signal-response protein CheL [Gluconobacter oxydans
621H]
Length = 100
Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 39 QEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE--TVKSLGGGFNGDFWQEILAENISDV 96
Q+A + Q + + ++ + + + GG ++ +L E I+
Sbjct: 19 QKADPA--KTLKSAQSFESMAINQMLQPMFATDDNSENMFSGGAGEKQFRPMLVEQIAKQ 76
Query: 97 IVKQQRITL 105
+ I L
Sbjct: 77 MENNGGIGL 85
>gi|303325594|ref|ZP_07356037.1| peptidase, M23/M37 family [Desulfovibrio sp. 3_1_syn3]
gi|302863510|gb|EFL86441.1| peptidase, M23/M37 family [Desulfovibrio sp. 3_1_syn3]
Length = 497
Score = 34.0 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 42 CDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQ 101
K+K + E + + + Q + + L G + +WQ++ + +S +
Sbjct: 44 EAKAKKLREACEGFESVFIQKMWQEMRNTLPKNGLLHGRDEQYWQDMYDQELSKSMTSAG 103
Query: 102 RITL 105
I L
Sbjct: 104 GIGL 107
>gi|119503649|ref|ZP_01625732.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [marine gamma
proteobacterium HTCC2080]
gi|119460711|gb|EAW41803.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [marine gamma
proteobacterium HTCC2080]
Length = 148
Score = 33.6 bits (75), Expect = 9.1, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 27 SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQ 86
+ F LK +A + ++ E+ Q+ + + Q +KS+ L D +Q
Sbjct: 12 TDFSQLESLKAEAQANPNA-ALEEVAQQFESLFMQMMLKSMRDATVKSDLFSSDQMDTYQ 70
Query: 87 EILAENISDVIVKQQRITL 105
+ + + + +Q I L
Sbjct: 71 TMADQQTALSLSQQGGIGL 89
>gi|312621333|ref|YP_004022946.1| flagellar protein FlgJ-like protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312201800|gb|ADQ45127.1| Flagellar protein FlgJ-like protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 116
Score = 33.6 bits (75), Expect = 10.0, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 41 ACDKSKSVPEMTQKLQGIMFQYFIKSILPE-ETVKSLGGGFNGDFWQEILAENISDVIVK 99
+ + + E ++ + IM K + G D + ++ + +S K
Sbjct: 30 SEKDKQKLKEACEEFESIMLSTIFKQMQKSIPKGGLFKEGIADDIFNDMFVDEVSKNASK 89
Query: 100 QQRITLD 106
Q I L
Sbjct: 90 QGGIGLS 96
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.299 0.128 0.314
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,640,283,706
Number of Sequences: 14124377
Number of extensions: 50166917
Number of successful extensions: 144359
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 144213
Number of HSP's gapped (non-prelim): 198
length of query: 112
length of database: 4,842,793,630
effective HSP length: 80
effective length of query: 32
effective length of database: 3,712,843,470
effective search space: 118810991040
effective search space used: 118810991040
T: 11
A: 40
X1: 16 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.7 bits)
S2: 75 (33.5 bits)